TY - JOUR A1 - Rohrmann, Alexander A1 - Kapp, Paul A1 - Carrapa, Barbara A1 - Reiners, Peter W. A1 - Guynn, Jerome A1 - Ding, Lin A1 - Heizler, Matthew T1 - Thermochronologic evidence for plateau formation in central Tibet by 45 Ma JF - Geology N2 - The timing of Tibetan plateau development remains elusive, despite its importance for evaluating models of continental lithosphere deformation and associated changes in surface elevation and climate. We present new thermochronologic data [biotite and K-feldspar Ar-40/Ar-39, apatite fission track, and apatite (U-Th)/He] from the central Tibetan plateau (Lhasa and Qiangtang terranes). The data indicate that over large regions, rocks underwent rapid to moderate cooling and exhumation during Cretaceous to Eocene time. This was coeval with >50% upper crustal shortening, suggesting substantial crustal thickening and surface elevation gain. Thermal modeling of combined thermochronometers requires exhumation of most samples to depths of <3 km between 85 and 45 Ma, followed by a decrease in erosional exhumation rate to low values of <0.05 mm/yr. The thermochronological results, when interpreted in the context of the deformation and paleoaltimetric history, are best explained by a scenario of plateau growth that began locally in central Tibet during the Late Cretaceous and expanded to encompass most of central Tibet by 45 Ma. Y1 - 2012 U6 - https://doi.org/10.1130/G32530.1 SN - 0091-7613 VL - 40 IS - 2 SP - 187 EP - 190 PB - American Institute of Physics CY - Boulder ER - TY - JOUR A1 - Riera, Arnau A1 - Gogolin, Christian A1 - Eisert, Jens T1 - Thermalization in nature and on a quantum computer JF - Physical review letters N2 - In this work, we show how Gibbs or thermal states appear dynamically in closed quantum many-body systems, building on the program of dynamical typicality. We introduce a novel perturbation theorem for physically relevant weak system-bath couplings that is applicable even in the thermodynamic limit. We identify conditions under which thermalization happens and discuss the underlying physics. Based on these results, we also present a fully general quantum algorithm for preparing Gibbs states on a quantum computer with a certified runtime and error bound. This complements quantum Metropolis algorithms, which are expected to be efficient but have no known runtime estimates and only work for local Hamiltonians. Y1 - 2012 U6 - https://doi.org/10.1103/PhysRevLett.108.080402 SN - 0031-9007 VL - 108 IS - 8 PB - American Physical Society CY - College Park ER - TY - THES A1 - Deneke, Carlus T1 - Theory of mRNA degradation T1 - Theoretische Beschreibung des Abbaus von mRNA N2 - One of the central themes of biology is to understand how individual cells achieve a high fidelity in gene expression. Each cell needs to ensure accurate protein levels for its proper functioning and its capability to proliferate. Therefore, complex regulatory mechanisms have evolved in order to render the expression of each gene dependent on the expression level of (all) other genes. Regulation can occur at different stages within the framework of the central dogma of molecular biology. One very effective and relatively direct mechanism concerns the regulation of the stability of mRNAs. All organisms have evolved diverse and powerful mechanisms to achieve this. In order to better comprehend the regulation in living cells, biochemists have studied specific degradation mechanisms in detail. In addition to that, modern high-throughput techniques allow to obtain quantitative data on a global scale by parallel analysis of the decay patterns of many different mRNAs from different genes. In previous studies, the interpretation of these mRNA decay experiments relied on a simple theoretical description based on an exponential decay. However, this does not account for the complexity of the responsible mechanisms and, as a consequence, the exponential decay is often not in agreement with the experimental decay patterns. We have developed an improved and more general theory of mRNA degradation which provides a general framework of mRNA expression and allows describing specific degradation mechanisms. We have made an attempt to provide detailed models for the regulation in different organisms. In the yeast S. cerevisiae, different degradation pathways are known to compete and furthermore most of them rely on the biochemical modification of mRNA molecules. In bacteria such as E. coli, degradation proceeds primarily endonucleolytically, i.e. it is governed by the initial cleavage within the coding region. In addition, it is often coupled to the level of maturity and the size of the polysome of an mRNA. Both for S. cerevisiae and E. coli, our descriptions lead to a considerable improvement of the interpretation of experimental data. The general outcome is that the degradation of mRNA must be described by an age-dependent degradation rate, which can be interpreted as a consequence of molecular aging of mRNAs. Within our theory, we find adequate ways to address this much debated topic from a theoretical perspective. The improvements of the understanding of mRNA degradation can be readily applied to further comprehend the mRNA expression under different internal or environmental conditions such as after the induction of transcription or stress application. Also, the role of mRNA decay can be assessed in the context of translation and protein synthesis. The ultimate goal in understanding gene regulation mediated by mRNA stability will be to identify the relevance and biological function of different mechanisms. Once more quantitative data will become available, our description allows to elaborate the role of each mechanism by devising a suitable model. N2 - Ein zentrales Ziel der modernen Biologie ist es, ein umfassendes Verständnis der Genexpression zu erlangen. Die fundamentalen Prozesse sind im zentralen Dogma der Genexpression zusammengefasst: Die genetische Information wird von DNA in Boten-RNAs (mRNA) transkribiert und im Prozess der Translation von mRNA in Proteine übersetzt. Zum Erhalt ihrer Funktionalität und der Möglichkeit von Wachstum und Fortpflanzung muss in jeder Zelle und für jedes Gen die optimale Proteinkonzentration akkurat eingestellt werden. Hierzu hat jeder Organismus detaillierte Regulationsmechanismen entwickelt. Regulation kann auf allen Stufen der Genexpression erfolgen, insbesondere liefert der Abbau der mRNA-Moleküle einen effizienten und direkten Kontrollmechanismus. Daher sind in allen Lebewesen spezifische Mechanismen - die Degradationsmechanismen - entstanden, welche aktiv den Abbau befördern. Um ein besseres Verständnis von den zugrunde liegenden Prozessen zu erlangen, untersuchen Biochemiker die Degradationsmechanismen im Detail. Gleichzeitig erlauben moderne molekularbiologische Verfahren die simultane Bestimmung der Zerfallskurven von mRNA für alle untersuchten Gene einer Zelle. Aus theoretischer Perspektive wird der Zerfall der mRNA-Menge als exponentieller Zerfall mit konstanter Rate betrachtet. Diese Betrachtung dient der Interpretation der zugrunde liegenden Experimente, berücksichtigt aber nicht die fundierten Kenntnisse über die molekularen Mechanismen der Degradation. Zudem zeigen viele experimentelle Studien ein deutliches Abweichen von einem exponentiellen Zerfall. In der vorliegenden Doktorarbeit wird daher eine erweiterte theoretische Beschreibung für die Expression von mRNA-Molekülen eingeführt. Insbesondere lag der Schwerpunkt auf einer verbesserten Beschreibung des Prozesses der Degradation. Die Genexpression kann als ein stochastischer Prozess aufgefasst werden, in dem alle Einzelprozesse auf zufällig ablaufenden chemischen Reaktionen basieren. Die Beschreibung erfolgt daher im Rahmen von Methoden der stochastischen Modellierung. Die fundamentale Annahme besteht darin, dass jedes mRNA-Molekül eine zufällige Lebenszeit hat und diese Lebenszeit für jedes Gen durch eine statistische Lebenszeitverteilung gegeben ist. Ziel ist es nun, spezifische Lebenszeitverteilungen basierend auf den molekularen Degradationsmechanismen zu finden. In dieser Arbeit wurden theoretische Modelle für die Degradation in zwei verschiedenen Organismen entwickelt. Zum einen ist bekannt, dass in eukaryotischen Zellen wie dem Hefepilz S. cerevisiae mehrere Mechanismen zum Abbau der mRNA-Moleküle in Konkurrenz zueinander stehen. Zudem ist der Abbau durch mehrere geschwindigkeitsbestimmende biochemische Schritte charakterisiert. In der vorliegenden Arbeit wurden diese Feststellungen durch ein theoretisches Modell beschrieben. Eine Markow-Kette stellte sich als sehr erfolgreich heraus, um diese Komplexität in eine mathematisch-fassbare Form abzubilden. Zum anderen wird in Kolibakterien die Degradation überwiegend durch einen initialen Schnitt in der kodierenden Sequenz der mRNA eingeleitet. Des Weiteren gibt es komplexe Wechselwirkungen mit dem Prozess der Translation. Die dafür verantwortlichen Enzyme - die Ribosomen - schützen Teile der mRNA und vermindern dadurch deren Zerfall. In der vorliegenden Arbeit wurden diese Zusammenhänge im Rahmen eines weiteren spezifischen, theoretischen Modells untersucht. Beide Mechanismen konnten an experimentellen Daten verifiziert werden. Unter anderem konnten dadurch die Interpretation der Zerfallsexperimente deutlich verbessert und fundamentale Eigenschaften der mRNA-Moleküle bestimmt werden. Ein Vorteil der statistischen Herangehensweise in dieser Arbeit liegt darin, dass theoretische Konzepte für das molekulare Altern der mRNAs entwickelt werden konnten. Mit Hilfe dieser neuentwickelten Methode konnte gezeigt werden, dass sich die Komplexität der Abbaumechanismen in einem Alterungsprozess manifestiert. Dieser kann mit der Lebenserwartung von einzelnen mRNA-Molekülen beschrieben werden. In dieser Doktorarbeit wurde eine verallgemeinerte theoretische Beschreibung des Abbaus von mRNAMolek ülen entwickelt. Die zentrale Idee basiert auf der Verknüpfung von experimentellen Zerfallsmessungen mit den biochemischen Mechanismen der Degradation. In zukünftigen experimentellen Untersuchungen können die entwickelten Verfahren angewandt werden, um eine genauere Interpretation der Befunde zu ermöglichen. Insbesondere zeigt die Arbeit auf, wie verschiedene Hypothesen über den Degradationsmechanismus anhand eines geeigneten mathematischen Modells durch quantitative Experimente verifiziert oder falsifiziert werden können. KW - Abbau von Boten-RNS KW - Stochastische Genexpression KW - Posttranskriptionale Genregulation KW - Nichtexponentieller Zerfall von mRNA KW - Molekulares Altern KW - Degradation of messenger RNA KW - Stochastic gene expression KW - Post-transcriptional gene regulation KW - Non-exponential mRNA decay KW - Molecular Aging Y1 - 2012 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-61998 ER - TY - JOUR A1 - Schad, Daniel A1 - Engbert, Ralf T1 - The zoom lens of attention simulating shuffled versus normal text reading using the SWIFT model JF - Visual cognition N2 - Assumptions on the allocation of attention during reading are crucial for theoretical models of eye guidance. The zoom lens model of attention postulates that attentional deployment can vary from a sharp focus to a broad window. The model is closely related to the foveal load hypothesis, i.e., the assumption that the perceptual span is modulated by the difficulty of the fixated word. However, these important theoretical concepts for cognitive research have not been tested quantitatively in eye movement models. Here we show that the zoom lens model, implemented in the SWIFT model of saccade generation, captures many important patterns of eye movements. We compared the model's performance to experimental data from normal and shuffled text reading. Our results demonstrate that the zoom lens of attention might be an important concept for eye movement control in reading. KW - Computational modelling KW - Eye movements KW - Foveal load hypothesis KW - Perceptual span KW - Reading KW - Zoom lens model of attention Y1 - 2012 U6 - https://doi.org/10.1080/13506285.2012.670143 SN - 1350-6285 SN - 1464-0716 VL - 20 IS - 4-5 SP - 391 EP - 421 PB - Wiley CY - Hove ER - TY - JOUR A1 - Jackson, Gregory A1 - Sorge, Arndt T1 - The trajectory of institutional change in Germany, 1979-2009 JF - Journal of European public policy N2 - Over the last three decades, the German political economy can be characterized by both institutional continuity and change. Understanding the dynamics of institutional change therefore requires an examination of the interplay of changes in formal institutional rules and how organizations respond to these changes by strategic attempts to promote or hinder further change in institutions. The macro-level political story of institutional change shows a number of paradoxes resulting in unexpected and often incomplete forms of market liberalization shaped by continued support for some core features of Germany's social market economy. The resulting erosion of Germany's co-ordinated model of economic organization through networks and business associations has gone hand-in-hand with the attempts to preserve these institutions for core workers and sectors of the economy in the face of changing environments. The result is a more varied institutional landscape characterized by international diffusion of liberal policies and the politics of their variable re-embedding within a long-term path of institutional continuity. KW - Germany KW - institutional change KW - varieties of capitalism Y1 - 2012 U6 - https://doi.org/10.1080/13501763.2012.709009 SN - 1350-1763 SN - 1466-4429 VL - 19 IS - 8 SP - 1146 EP - 1167 PB - Routledge, Taylor & Francis Group CY - Abingdon ER - TY - GEN A1 - Felser, Claudia A1 - Cunnings, Ian A1 - Batterham, Claire A1 - Clahsen, Harald T1 - The timing of island effects in nonnative sentence processing T2 - Postprints der Universität Potsdam Humanwissenschaftliche Reihe N2 - Using the eye-movement monitoring technique in two reading comprehension experiments, this study investigated the timing of constraints on wh-dependencies (so-called island constraints) in first- and second-language (L1 and L2) sentence processing. The results show that both L1 and L2 speakers of English are sensitive to extraction islands during processing, suggesting that memory storage limitations affect L1 and L2 comprehenders in essentially the same way. Furthermore, these results show that the timing of island effects in L1 compared to L2 sentence comprehension is affected differently by the type of cue (semantic fit versus filled gaps) signaling whether dependency formation is possible at a potential gap site. Even though L1 English speakers showed immediate sensitivity to filled gaps but not to lack of semantic fit, proficient German-speaking learners of English as a L2 showed the opposite sensitivity pattern. This indicates that initial wh-dependency formation in L2 processing is based on semantic feature matching rather than being structurally mediated as in L1 comprehension. T3 - Zweitveröffentlichungen der Universität Potsdam : Humanwissenschaftliche Reihe - 526 KW - trace positions KW - empty categories KW - garden-paths KW - 2nd-language KW - grammar KW - dependencies KW - plausibility KW - constraints KW - english KW - comprehension Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-415179 SN - 1866-8364 EP - 526 ER - TY - JOUR A1 - Felser, Claudia A1 - Cunnings, Ian A1 - Batterham, Claire A1 - Clahsen, Harald T1 - The timing of Island effects in nonnative sentence processing JF - Studies in second language acquisition N2 - Using the eye-movement monitoring technique in two reading comprehension experiments, this study investigated the timing of constraints on wh-dependencies (so-called island constraints) in first- and second-language (L1 and L2) sentence processing. The results show that both L1 and L2 speakers of English are sensitive to extraction islands during processing, suggesting that memory storage limitations affect L1 and L2 comprehenders in essentially the same way. Furthermore, these results show that the timing of island effects in L1 compared to L2 sentence comprehension is affected differently by the type of cue (semantic fit versus filled gaps) signaling whether dependency formation is possible at a potential gap site. Even though L1 English speakers showed immediate sensitivity to filled gaps but not to lack of semantic fit, proficient German-speaking learners of English as a L2 showed the opposite sensitivity pattern. This indicates that initial wh-dependency formation in L2 processing is based on semantic feature matching rather than being structurally mediated as in L1 comprehension. KW - trace positions KW - empty categories KW - garden-paths KW - 2nd-language KW - grammar KW - dependencies KW - plausibility KW - constraints KW - english KW - comprehension Y1 - 2012 U6 - https://doi.org/10.1017/S0272263111000507 SN - 0272-2631 VL - 34 IS - 1 SP - 67 EP - 98 PB - Cambridge University Press CY - Cambridge ER - TY - BOOK A1 - Krivochen, Diego Gabriel T1 - The Syntax and Semantics of the Nominal Construction BT - A Radically Minimalist Perspective T3 - Potsdam Linguistic Investigations Y1 - 2012 SN - 978-3-631-62448-7 VL - 8 PB - Peter Lang CY - Frankfurt am Main ER - TY - BOOK A1 - Zimmermann, Andreas A1 - Oellers-Frahm, Karin A1 - Tomuschat, Christian A1 - Tams, Christian J. T1 - The statute of the international court of justice : a commentary Y1 - 2012 SN - 978-0-19-969299-6 PB - Oxford Univ. Press CY - Oxford ET - 2. ed. ER - TY - JOUR A1 - Griffiths, Toni T1 - The state of jewish memory in York and Winchester JF - PaRDeS : Zeitschrift der Vereinigung für Jüdische Studien e.V. N2 - Am Beispiel der englischen Städte York und Winchester wird in diesem Artikel das Konzept der Erinnerung von Pierre Nora untersucht, um die Individualität lokaler Ansätze der Erinnerung an mittelalterliche englische Judenheiten zu veranschaulichen. Allgemein wird in diesem Beitrag aufgezeigt, wie Erinnerung einerseits aus einem Zeitalter anhaltenden Schweigens befreien und andererseits wieder in ein größeres historisches Narrativ integriert werden kann. Vice versa wird ebenfalls untersucht, wie das die jüdische Erinnerung umschließende Schweigen dennoch seine Fortsetzung im scharfen Gegensatz zu diesem neuen Verständnis von Erinnerung findet. Abschließend wird im Artikel die Frage gestellt, warum dieses Schweigen anhält und ob Noras Theorie, dass sich Erinnerung kontinuierlich entwickelt, auf die Erfahrungen jüdischer Erinnerung in York und Winchester angewendet werden kann. N2 - This article examines Pierre Nora’s concept of memory using the examples of York and Winchester to demonstrate the individuality of local approaches to the memory of medieval Anglo-Jewries. Overall, this paper will highlight how memory can be rescued from a period of prolonged silence and reintegrated back into a wider historical narrative. Conversely it will also examine how in stark contrast to this new attitude of remembering the silence surrounding Jewish memory continues to exist elsewhere. Finally this paper will ask why this silence remains, and question whether Nora’s theory that memory is constantly evolving is applicable to the experiences of Jewish memory in York and Winchester. Y1 - 2012 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-61523 SN - 1614-6492 SN - 1862-7684 IS - 18 SP - 67 EP - 78 PB - Universitätsverlag Potsdam CY - Potsdam ER -