TY - JOUR A1 - Michalik-Onichimowska, Aleksandra A1 - Kern, Simon A1 - Riedel, Jens A1 - Panne, Ulrich A1 - King, Rudibert A1 - Maiwald, Michael T1 - "Click" analytics for "click" chemistry - A simple method for calibration-free evaluation of online NMR spectra JF - Journal of magnetic resonance N2 - Driven mostly by the search for chemical syntheses under biocompatible conditions, so called "click" chemistry rapidly became a growing field of research. The resulting simple one-pot reactions are so far only scarcely accompanied by an adequate optimization via comparably straightforward and robust analysis techniques possessing short set-up times. Here, we report on a fast and reliable calibration-free online NMR monitoring approach for technical mixtures. It combines a versatile fluidic system, continuous-flow measurement of H-1 spectra with a time interval of 20 s per spectrum, and a robust, fully automated algorithm to interpret the obtained data. As a proof-of-concept, the thiol-ene coupling between N-boc cysteine methyl ester and ally] alcohol was conducted in a variety of non-deuterated solvents while its time-resolved behaviour was characterized with step tracer experiments. Overlapping signals in online spectra during thiol-ene coupling could be deconvoluted with a spectral model using indirect hard modeling and were subsequently converted to either molar ratios (using a calibration free approach) or absolute concentrations (using 1-point calibration). For various solvents the kinetic constant k for pseudo-first order reaction was estimated to be 3.9 h(-1) at 25 degrees C. The obtained results were compared with direct integration of non-overlapping signals and showed good agreement with the implemented mass balance. (C) 2017 Elsevier Inc. All rights reserved. KW - NMR spectroscopy KW - Reaction monitoring KW - Automated data evaluation KW - Thiol-ene click chemistry Y1 - 2017 U6 - https://doi.org/10.1016/j.jmr.2017.02.018 SN - 1090-7807 SN - 1096-0856 VL - 277 SP - 154 EP - 161 PB - Elsevier CY - San Diego ER - TY - JOUR A1 - Vishnevetskaya, Natalya S. A1 - Hildebrand, Viet A1 - Niebuur, Bart-Jan A1 - Grillo, Isabelle A1 - Filippov, Sergey K. A1 - Laschewsky, Andre A1 - Müller-Buschbaum, Peter A1 - Papadakis, Christine M. T1 - "Schizophrenic" Micelles from Doubly Thermoresponsive Polysulfobetaine-b-poly(N-isopropylmethacrylamide) Diblock Copolymers JF - Macromolecules : a publication of the American Chemical Society Y1 - 2017 U6 - https://doi.org/10.1021/acs.macromol.7b00356 SN - 0024-9297 SN - 1520-5835 VL - 50 SP - 3985 EP - 3999 PB - American Chemical Society CY - Washington ER - TY - GEN A1 - König, Jana A1 - Kelling, Alexandra A1 - Schilde, Uwe A1 - Strauch, Peter T1 - [µ2-O,O′,Oʺ,Oʺ′-Bis(1,2-dithiooxalato-S,S′)nickel(II)]bis[-O,O′-bis(1,2-dithiooxalato-S,S′)-nickel(II)pentaquaholmium(III)]hydrate, [Ho2Ni3(dto)6(H2O)10] N2 - Planar bis(1,2-dithiooxalato)nickelate(II), [Ni(dto)]2− reacts in aqueous solutions with lanthanide ions (Ln3+) to form pentanuclear, hetero-bimetallic complexes of the general composition [{Ln(H2O)n}2{Ni(dto)2}3]·xH2O. (n = 4 or 5; x = 9–12). The complex [{Ho(H2O)5}2{Ni(dto)2}3]·10H2O, Ho2Ni3, was synthesized and characterized by single crystal X-ray structure analysis and powder diffraction. The Ho2Ni3 complex crystallizes as monoclinic crystals in the space group P21/c. The channels and cavities, appearing in the crystal packing of the complex molecules, are occupied by a varying amount of non-coordinated water molecules. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 360 KW - lanthanides KW - holmium(III) KW - 1,2-dithiooxalate KW - crystal structure KW - nickel(II) Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-400598 ER - TY - JOUR A1 - Meyners, Christian A1 - Mertens, Monique A1 - Wessig, Pablo A1 - Meyer-Almes, Franz-Josef T1 - A Fluorescence-Lifetime-Based Binding Assay for Class IIa Histone Deacetylases JF - Chemistry - a European journal N2 - Class IIa histone deacetylases (HDACs) show extremely low enzymatic activity and no commonly accepted endogenous substrate is known today. Increasing evidence suggests that these enzymes exert their effect rather through molecular recognition of acetylated proteins and recruiting other proteins like HDAC3 to the desired target location. Accordingly, class IIa HDACs like bromodomains have been suggested to act as “Readers” of acetyl marks, whereas enzymatically active HDACs of class I or IIb are called “Erasers” to highlight their capability to remove acetyl groups from acetylated histones or other proteins. Small-molecule ligands of class IIa histone deacetylases (HDACs) have gained tremendous attention during the last decade and have been suggested as pharmaceutical targets in several indication areas such as cancer, Huntington's disease and muscular atrophy. Up to now, only enzyme activity assays with artificial chemically activated trifluoroacetylated substrates are in use for the identification and characterization of new active compounds against class IIa HDACs. Here, we describe the first binding assay for this class of HDAC enzymes that involves a simple mix-and-measure procedure and an extraordinarily robust fluorescence lifetime readout based on [1,3]dioxolo[4,5-f]benzodioxole-based ligand probes. The principle of the assay is generic and can also be transferred to class I HDAC8. KW - drug discovery KW - enzymes KW - fluorescent probes KW - high-throughput screening KW - hydrolases Y1 - 2017 U6 - https://doi.org/10.1002/chem.201605140 SN - 0947-6539 SN - 1521-3765 VL - 23 IS - 13 SP - 3107 EP - 3116 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Rackwitz, Jenny A1 - Ranković, Miloš Lj. A1 - Milosavljević, Aleksandar R. A1 - Bald, Ilko T1 - A novel setup for the determination of absolute cross sections for low-energy electron induced strand breaks in oligonucleotides BT - the effect of the radiosensitizer 5-fluorouracil* JF - The European physical journal : D, Atomic, molecular, optical and plasma physics N2 - Low-energy electrons (LEEs) play an important role in DNA radiation damage. Here we present a method to quantify LEE induced strand breakage in well-defined oligonucleotide single strands in terms of absolute cross sections. An LEE irradiation setup covering electron energies <500 eV is constructed and optimized to irradiate DNA origami triangles carrying well-defined oligonucleotide target strands. Measurements are presented for 10.0 and 5.5 eV for different oligonucleotide targets. The determination of absolute strand break cross sections is performed by atomic force microscopy analysis. An accurate fluence determination ensures small margins of error of the determined absolute single strand break cross sections sigma SSB. In this way, the influence of sequence modification with the radiosensitive 5-Fluorouracil (U-5F) is studied using an absolute and relative data analysis. We demonstrate an increase in the strand break yields of U-5F containing oligonucleotides by a factor of 1.5 to 1.6 compared with non-modified oligonucleotide sequences when irradiated with 10 eV electrons. Y1 - 2017 U6 - https://doi.org/10.1140/epjd/e2016-70608-4 SN - 1434-6060 SN - 1434-6079 VL - 71 PB - Springer CY - New York ER - TY - JOUR A1 - Lorenz, U. A1 - Saalfrank, Peter T1 - A novel system-bath Hamiltonian for vibration-phonon coupling BT - Formulation, and application to the relaxation of Si-H and Si-D bending modes of H/D:Si(100)-(2 x 1) JF - Chemical physics : a journal devoted to experimental and theoretical research involving problems of both a chemical and physical nature N2 - We present a rigorous method to set up a system-bath Hamiltonian for the coupling of adsorbate vibrations (the system) to surface phonons (the bath). The Hamiltonian is straightforward to derive and exact up to second order in the environment coordinates, thus capable of treating one- and two-phonon contributions to vibration-phonon coupling. The construction of the Hamiltonian uses orthogonal coordinates for system and bath modes, is based on an embedded cluster approach, and generalizes previous Hamiltonians of a similar type, but avoids several (additional) approximations. While the parametrization of the full Hamiltonian is in principle feasible by a first principles quantum mechanical treatment, here we adopt in the spirit of a QM/MM model a combination of density functional theory (“QM”, for the system) and a semiempirical forcefield (“MM”, for the bath). We apply the Hamiltonian to a fully H-covered Si(100)-(2 × 1) surface, using Fermi’s Golden Rule to obtain vibrational relaxation rates of various H–Si bending modes of this system. As in earlier work it is found that the relaxation is dominated by two-phonon contributions because of an energy gap between the Si–H bending modes and the Si phonon bands. We obtain vibrational lifetimes (of the first excited state) on the order of 2 ps at K. The lifetimes depend only little on the type of bending mode (symmetric vs. antisymmetric, parallel vs. perpendicular to the Si2H2 dimers). They decrease by a factor of about two when heating the surface to 300 K. We also study isotope effects by replacing adsorbed H atoms by deuterium, D. The Si–D bending modes are shifted into the Si phonon band of the solid, opening up one-phonon decay channels and reducing the lifetimes to few hundred fs. Y1 - 2016 U6 - https://doi.org/10.1016/j.chemphys.2016.06.004 SN - 0301-0104 SN - 1873-4421 VL - 482 SP - 69 EP - 80 PB - Elsevier Science CY - Amsterdam ER - TY - JOUR A1 - Thierbach, Adrian A1 - Neiss, Christian A1 - Gallandi, Lukas A1 - Marom, Noa A1 - Koerzdoerfer, Thomas A1 - Goerling, Andreas T1 - Accurate Valence Ionization Energies from Kohn-Sham Eigenvalues with the Help of Potential Adjustors JF - Journal of chemical theory and computation N2 - An accurate yet computationally very efficient and formally well justified approach to calculate molecular ionization potentials is presented and tested. The first as well as higher ionization potentials are obtained as the negatives of the Kohn-Sham eigenvalues of the neutral molecule after adjusting the eigenvalues by a recently [Gorling Phys. Rev. B 2015, 91, 245120] introduced potential adjustor for exchange-correlation potentials. Technically the method is very simple. Besides a Kohn-Sham calculation of the neutral molecule, only a second Kohn-Sham calculation of the cation is required. The eigenvalue spectrum of the neutral molecule is shifted such that the negative of the eigenvalue of the highest occupied molecular orbital equals the energy difference of the total electronic energies of the cation minus the neutral molecule. For the first ionization potential this simply amounts to a Delta SCF calculation. Then, the higher ionization potentials are obtained as the negatives of the correspondingly shifted Kohn-Sham eigenvalues. Importantly, this shift of the Kohn-Sham eigenvalue spectrum is not just ad hoc. In fact, it is formally necessary for the physically correct energetic adjustment of the eigenvalue spectrum as it results from ensemble density-functional theory. An analogous approach for electron affinities is equally well obtained and justified. To illustrate the practical benefits of the approach, we calculate the valence ionization energies of test sets of small- and medium-sized molecules and photoelectron spectra of medium-sized electron acceptor molecules using a typical semilocal (PBE) and two typical global hybrid functionals (B3LYP and PBE0). The potential adjusted B3LYP and PBE0 eigenvalues yield valence ionization potentials that are in very good agreement with experimental values, reaching an accuracy that is as good as the best G(0)W(0) methods, however, at much lower computational costs. The potential adjusted PBE eigenvalues result in somewhat less accurate ionization energies, which, however, are almost as accurate as those obtained from the most commonly used G(0)W(0) variants. Y1 - 2017 U6 - https://doi.org/10.1021/acs.jctc.7b00490 SN - 1549-9618 SN - 1549-9626 VL - 13 SP - 4726 EP - 4740 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Abouserie, Ahed A1 - Zehbe, Kerstin A1 - Metzner, Philipp A1 - Kelling, Alexandra A1 - Günter, Christina A1 - Schilde, Uwe A1 - Strauch, Peter A1 - Körzdörfer, Thomas A1 - Taubert, Andreas T1 - Alkylpyridinium Tetrahalidometallate Ionic Liquids and Ionic Liquid Crystals: Insights into the Origin of Their Phase Behavior JF - European journal of inorganic chemistry : a journal of ChemPubSoc Europe N2 - Six N-alkylpyridinium salts [CnPy](2)[MCl4] (n = 4 or 12 and M = Co, Cu, Zn) were synthesized, and their structure and thermal properties were studied. The [C4Py](2)[MCl4] compounds are monoclinic and crystallize in the space group P2(1)/n. The crystals of the longer chain analogues [C12Py](2)[MCl4] are triclinic and crystallize in the space group P (1) over bar. Above the melting temperature, all compounds are ionic liquids (ILs). The derivatives with the longer C12 chain exhibit liquid crystallinity and the shorter chain compounds only show a melting transition. Consistent with single-crystal analysis, electron paramagnetic resonance spectroscopy suggests that the [CuCl4](2-) ions in the Cu-based ILs have a distorted tetrahedral geometry. KW - Ionic liquids KW - Alkylpyridinium salts KW - Structure elucidation KW - Phase transitions Y1 - 2017 U6 - https://doi.org/10.1002/ejic.201700826 SN - 1434-1948 SN - 1099-0682 SP - 5640 EP - 5649 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Abouserie, Ahed A1 - Zehbe, Kerstin A1 - Metzner, Philipp A1 - Kelling, Alexandra A1 - Günter, Christina A1 - Schilde, Uwe A1 - Strauch, Peter A1 - Körzdörfer, Thomas A1 - Taubert, Andreas T1 - Alkylpyridinium Tetrahalidometallate Ionic Liquids and Ionic Liquid Crystals: Insights into the Origin of Their Phase Behavior JF - European journal of inorganic chemistry : a journal of ChemPubSoc Europe N2 - Six N-alkylpyridinium salts [CnPy](2)[MCl4] (n = 4 or 12 and M = Co, Cu, Zn) were synthesized, and their structure and thermal properties were studied. The [C4Py](2)[MCl4] compounds are monoclinic and crystallize in the space group P2(1)/n. The crystals of the longer chain analogues [C12Py](2)[MCl4] are triclinic and crystallize in the space group P (1) over bar. Above the melting temperature, all compounds are ionic liquids (ILs). The derivatives with the longer C12 chain exhibit liquid crystallinity and the shorter chain compounds only show a melting transition. Consistent with single-crystal analysis, electron paramagnetic resonance spectroscopy suggests that the [CuCl4](2-) ions in the Cu-based ILs have a distorted tetrahedral geometry. KW - Ionic liquids KW - Alkylpyridinium salts KW - Structure elucidation KW - Phase transitions Y1 - 2017 U6 - https://doi.org/10.1002/ejic.201700826 SN - 1434-1948 SN - 1099-0682 SP - 5640 EP - 5649 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Lutze, Jana A1 - Bañares, Miguel A. A1 - Pita, Marcos A1 - Haase, Andrea A1 - Luch, Andreas A1 - Taubert, Andreas T1 - alpha-((4-Cyanobenzoyl)oxy)-omega-methyl poly(ethylene glycol) BT - a new stabilizer for silver nanoparticles JF - Beilstein journal of nanotechnology N2 - The article describes the synthesis and properties of alpha-((4-cyanobenzoyl)oxy)-omega-methyl poly(ethylene glycol), the first poly(ethylene glycol) stabilizer for metal nanoparticles that is based on a cyano rather than a thiol or thiolate anchor group. The silver particles used to evaluate the effectiveness of the new stabilizer typically have a bimodal size distribution with hydrodynamic diameters of ca. 13 and ca. 79 nm. Polymer stability was evaluated as a function of the pH value both for the free stabilizer and for the polymers bound to the surface of the silver nanoparticles using H-1 NMR spectroscopy and zeta potential measurements. The polymer shows a high stability between pH 3 and 9. At pH 12 and higher the polymer coating is degraded over time suggesting that alpha-((4-cyanobenzoyl) oxy)-omega-methyl poly(ethylene glycol) is a good stabilizer for metal nanoparticles in aqueous media unless very high pH conditions are present in the system. The study thus demonstrates that cyano groups can be viable alternatives to the more conventional thiol/thiolate anchors. KW - cyano anchor group KW - poly(ethylene glycol) KW - polymer coating KW - silver nanoparticles Y1 - 2017 U6 - https://doi.org/10.3762/bjnano.8.67 SN - 2190-4286 VL - 8 SP - 627 EP - 635 PB - Beilstein-Institut zur Förderung der Chemischen Wissenschaften CY - Frankfurt, Main ER -