TY - GEN A1 - Schmälzlin, Elmar A1 - Walz, Bernd A1 - Klimant, Ingo A1 - Schewe, Bettina A1 - Löhmannsröben, Hans-Gerd T1 - Monitoring hormone-induced oxygen consumption in the salivary glands of the blowfly, Calliphora vicina, by use of luminescent microbeads N2 - The salivary glands of the blowfly were injected with luminescent oxygen-sensitive microbeads. The changes in oxygen content within individual gland tubules during hormone-induced secretory activity were quantified. The measurements are based on an upgraded phase-modulation technique, where the phase shift of the sensor phosphorescence is determined independently from concentration and background signals. We show that the combination of a lock-in amplifier with a fluorescence microscope results in a convenient setup to measure oxygen concentrations within living animal tissues at the cellular level. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - paper 006 Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-12206 ER - TY - JOUR A1 - Stöcklein, Walter F. M. T1 - Molecule-detective BT - Molekül-Detektive : Biosensoren N2 - Biosensors are analytical devices incorporating biological material (receptor) intimately associated with or integrated within a physicochernical transducer. Advantages are the high selectivity for analyte detection. Examples given comprise the very successful commercial blood glucose biosensors made for the self-control by the diabetic patients. Other biosensors are part of an analytic system, including the sensor chips Of surface plasmon resonance or interferometry based devices, piezoelectric or reflectometric sensors capable of direct measurement of mass changes, and thermometric and other reagentless sensors. The development of nanotubes-based devices allows for significant enhancment of the signal-to-noise ratio of the biosensors. A milestone on the way towards miniaturization and parallelization of biosensors is the recently developed and prize-winning electronic DNA chip Y1 - 2006 ER - TY - JOUR A1 - Mechau, Norman A1 - Saphiannikova, Marina A1 - Neher, Dieter T1 - Molecular tracer diffusion in thin azobenzene polymer layers JF - Applied physics letters N2 - Translational diffusion of fluorescent tracer molecules in azobenzene polymer layers is studied at different temperatures and under illumination using the method of fluorescence recovery after photobleaching. Diffusion is clearly observed in the dark above the glass transition temperature, while homogeneous illumination at 488 nm and 100 mW/cm(2) does not cause any detectable diffusion of the dye molecules within azobenzene layers. This implies that the viscosity of azobenzene layers remains nearly unchanged under illumination with visible light in the absence of internal or external forces. (c) 2006 American Institute of Physics. Y1 - 2006 U6 - https://doi.org/10.1063/1.2405853 SN - 0003-6951 VL - 89 IS - 25 PB - Elsevier CY - Melville ER - TY - JOUR A1 - Ketmaier, Valerio A1 - Giusti, Folco A1 - Caccone, Adalgisa T1 - Molecular phylogeny and historical biogeography of the land snail genus Solatopupa (Pulmonata) in the peri- Tyrrhenian area N2 - The land snail genus Solatopupa consists of six species and has a peri-Tyrrhenian distribution; most of the species have a very narrow range and all of them except one (Solatopupa cianensis, which inhabits porphyritic rocks) are strictly bound to calcareous substrates. One species (Solatopupa gidoni) is limited to Sardinia, Corsica, and Elba Island. Because the potential for dispersal of these snails is low, the insular range of this species has been traditionally related to the Oligocenic detachment of the Sardinia-Corsica microplate from the Iberian plate and its subsequent rotation towards the Italian peninsula. In this Study, we used sequences of three mitochondrial and one nuclear gene to reconstruct the evolutionary history of the genus. Our phylogenetic results are consistent with the genetic relationships found using allozymes, but contrast with the phylogenetic hypotheses based on karyology and morphology. Molecular clock estimates indicate that the main cladogenetic events in the genus occurred between the middle Miocene and the middle-late Pliocene. Patterns of phylogenetic relationships and geological considerations suggest that the cladogenesis of the genus can be explained by vicariant (tectonic) processes. Our datings do not support a causal relation between the split of S. guidoni from its continental sister taxon and the initial phases of the detachment of the Corsica-Sardinia microplate from the mainland. On the contrary, time estimates coincide with the very last phase of detachment of the microplate (from 5 to 3 Myrs ago). Overall, our molecular clock estimates are in good agreement with the latest geological views on the tectonic evolution of the peri-Tyrrhenian area. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/10557903 U6 - https://doi.org/10.1016/j.ympev.2005.12.008 SN - 1055-7903 ER - TY - JOUR A1 - Wachten, Sebastian A1 - Schlenstedt, Jana A1 - Gauss, Renate A1 - Baumann, Arnd T1 - Molecular identification and functional characterization of an adenylyl cyclase from the honeybee N2 - Cyclic AMP (cAMP) serves as an important messenger in virtually all organisms. In the honeybee (Apis mellifera), cAMP-dependent signal transduction has been implicated in behavioural processes as well as in learning and memory. Key components of cAMP-signalling cascades are adenylyl cyclases. However, the molecular identities and biochemical properties of adenylyl cyclases are completely unknown in the honeybee. We have cloned a cDNA (Amac3) from honeybee brain that encodes a membrane-bound adenylyl cyclase. The Amac3 gene is an orthologue of the Drosophila ac39E gene. The corresponding proteins share an overall amino acid similarity of approximately 62%. Phylogenetically, AmAC3 belongs to group 1 adenylyl cyclases. Heterologously expressed AmAC3 displays basal enzymatic activity and efficient coupling to endogenous G protein signalling pathways. Stimulation of beta-adrenergic receptors induces AmAC3 activity with an EC50 of about 3.1 mu m. Enzymatic activity is also increased by forskolin (EC50 approximately 15 mu m), a specific agonist of membrane-bound adenylyl cyclases. Similar to certain biogenic amine receptor genes of the honeybee, Amac3 transcripts are expressed in many somata of the brain, especially in mushroom body neurones. These results suggest that the enzyme serves in biogenic amine signal transduction cascades and in higher brain functions that contribute to learning and memory of the bee Y1 - 2006 UR - http://onlinelibrary.wiley.com/doi/10.1111/j.1471-4159.2006.03666.x/full U6 - https://doi.org/10.1111/j.1471-4159.2006.03666.x ER - TY - THES A1 - Narayanan Nair, Arun Kumar T1 - Molecular dynamics simulations of polyelectrolyte brushes T1 - Molekulardynamik Simulationen von Polyelektrolytbürsten N2 - This thesis studies strong, completely charged polyelectrolyte brushes. Extensive molecular dynamics simulations are performed on different polyelectrolyte brush systems using local compute servers and massively parallel supercomputers. The full Coulomb interaction of charged monomers, counterions, and salt ions is treated explicitly. The polymer chains are anchored by one of their ends to a uncharged planar surface. The chains are treated under good solvent conditions. Monovalent salt ions (1:1 type) are modelled same as counterions. The studies concentrate on three different brush systems at constant temperature and moderate Coulomb interaction strength (Bjerrum length equal to bond length): The first system consists of a single polyelectrolyte brush anchored with varying grafting density to a plane. Results show that chains are extended up to about 2/3 of their contour length. The brush thickness slightly grows with increasing anchoring density. This slight dependence of the brush height on grafting density is in contrast to the well known scaling result for the osmotic brush regime. That is why the result obtained by simulations has stimulated further development of theory as well as new experimental investigations on polyelectrolyte brushes. This observation can be understood on a semi-quantitative level using a simple scaling model that incorporates excluded volume effects in a free-volume formulation where an effective cross section is assigned to the polymer chain from where couterions are excluded. The resulting regime is called nonlinear osmotic brush regime. Recently this regime was also obtained in experiments. The second system studied consists of polyelectrolyte brushes with added salt in the nonlinear osmotic regime. Varying salt is an important parameter to tune the structure and properties of polyelectrolytes. Further motivation is due to a theoretical scaling prediction by Pincus for the salt dependence of brush thickness. In the high salt limit (salt concentration much larger than counterion concentration) the brush height is predicted to decrease with increasing external salt, but with a relatively weak power law showing an exponent -1/3. There is some experimental and theoretical work that confirms this prediction, but there are other results that are in contradiction. In such a situation simulations are performed to validate the theoretical prediction. The simulation result shows that brush thickness decreases with added salt, and indeed is in quite good agreement with the scaling prediction by Pincus. The relation between buffer concentration and the effective ion strength inside the brush at varying salt concentration is of interest both from theoretical as well as experimental point of view. The simulation result shows that mobile ions (counterions as well as salt) distribute nonhomogeneously inside and outside of the brush. To explain the relation between the internal ion concentration with the buffer concentration a Donnan equilibrium approach is employed. Modifying the Donnan approach by taking into account the self-volume of polyelectrolyte chains as indicated above, the simulation result can be explained using the same effective cross section for the polymer chains. The extended Donnan equilibrium relation represents a interesting theoretical prediction that should be checked by experimental data. The third system consist of two interacting polyelectrolyte brushes that are grafted to two parallel surfaces. The interactions between brushes are important, for instance, in stabilization of dispersions against flocculation. In the simulations pressure is evaluated as a function of separation D between the two grafting planes. The pressure behavior shows different regimes for decreasing separation. This behavior is in qualitative agreement with experimental data. At relatively weak compression the pressure behavior obtained in the simulation agrees with a 1/D power law predicted by scaling theory. Beyond that the present study could supply new insight for understanding the interaction between polyelectrolyte brushes. N2 - In dieser Arbeit werden vollständig geladene, starke Polyelektrolytbürsten untersucht. Unter Verwendung lokaler Computeserver und massiv paralleler Supercomputer wurden umfangreiche Molekulardynamik Simulationen von verschiedenen Polyelektrolytbürsten Systemen ausgeführt. Die vollständige Coulomb Wechselwirkung zwischen geladenen Monomeren, Gegen- und Salzionen wird explizit berücksichtigt. Die Polymerketten – in gutem Lösungsmittel simuliert – sind mit einem Ende an einer ungeladenen, planaren Grenzfläche verankert. Monovalente Salzionen (1:1) werden identisch wie Gegenionen modelliert. Simulationen bei konstanter Temperatur und moderater Stärke der Coulomb Wechselwirkung (Bjerrum Länge etwa gleich der Bindungslänge) konzentrieren sich auf drei Systeme: 1. Polyelektrolytbürsten ohne Salzionen mit variabler Ankerdichte der Ketten Die Simulationsergebnisse zeigen, dass die Polyelektrolytketten bis zu 2/3 ihrer Konturlänge gestreckt sind, wobei die Bürstenhöhe mit zunehmender Ankerdichte leicht wächst. Diese schwache Abhängigkeit steht im Widerspruch zu theoretischen Ergebnissen, die Unabhängigkeit von der Ankerdichte im so genannten osmotischen Regime vorhersagen. In der Folge haben die Simulationen sowohl weitergehende theoretische Überlegungen als auch neue experimentelle Untersuchungen an Polyelektrolytbürsten stimuliert. Zwischenzeitlich konnte die Beobachtung auf semi-quantitativer Ebene auf der Basis eines einfachen Skalenmodells verstanden werden, welches das Eigenvolumen der Polymerketten im Rahmen einer freien Volumen Näherung berücksichtigt. Dabei wird der Kette ein effektiver Querschnitt zugeordnet, von dem Gegenionen ausgeschlossen sind. Das resultierende Regime, in dem nichtlineare Entropie und Elastizität berücksichtigt sind, wird als nichtlinear osmotisches Regime bezeichnet. In der Zwischenzeit konnte dieses Regime auch experimentell verifiziert werden. 2. Polyelektrolytbürsten im nichtlinear osmotischen Regime mit variabler Salzkonzentration Struktur und Eigenschaften von Polyelektrolyten können in einfacher Weise durch Veränderung der Salzkonzentration beeinflusst werden. Nach Pincus sollte für starke Salzkonzentration (groß gegenüber der Konzentration der Gegenionen) die Bürstenhöhe mit wachsender Konzentration abnehmen, jedoch nur als relativ schwaches Potenzgesetz mit einem Exponenten -1/3. In der Literatur sind experimentelle und theoretische Ergebnisse bekannt, die diese theoretische Vorhersage bestätigen – allerdings auch solche, die dazu im Widerspruch stehen. In einer solchen Situation sind Simulationen ein geeignetes Mittel, um theoretische Vorhersagen zu überprüfen: In der Tat bestätigen die vorliegenden Simulationsergebnisse in eindeutiger Weise die theoretische Vorhersage von Pincus. Das Verhältnis zwischen Buffer Konzentration und effektiver Ionenstärke in der Polymerschicht ist nicht nur von theoretischem Interesse, sondern hat ebenso experimentelle Relevanz. Die Simulationen zeigen, dass die mobilen Ionen innerhalb und außerhalb der Polyelektrolytbürste inhomogen verteilt sind. Ein Erklärungsversuch mit Hilfe des Donnan Gleichgewichts liefert nur für sehr kleine Salzkon-zentrationen befriedigende Übereinstimmung, ansonst ein qualitativ unterschiedliches Verhalten. Wird jedoch das Eigenvolumen der Ketten in ähnlicher Weise wie oben skizziert berücksichtigt, können die Simulationsdaten bei identischer Parameterwahl in nahezu perfekter Übereinstimmung reproduziert werden. Der erweiterte Ansatz für das Donnan Gleichgewicht in konzentrierten Systemen stellt eine interessante theoretische Vorhersage dar, die auch experimentell überprüft werden sollte. 3. Wechselwirkung zwischen zwei Polyelektrolytbürsten ohne Salz Repulsive Wechselwirkungen zwischen Polymerbürsten haben in unterschiedlichen Zusammenhängen eine große Bedeutung, so z.B. bei der Stabilisierung von Dispersionen oder bei der Reduzierung von Reibungswiderständen in biologischen Systemen. In den vorgestellten Simulationen von zwei Polyelektrolytbürsten, die an gegenüberliegende Grenzflächen verankert sind, wird der osmotische Druck in Abhängigkeit vom Abstand D der Ankerflächen untersucht. Mit abnehmendem Abstand werden unterschiedliche Regime im Verhalten des Druckes beobachtet. Dieses Verhalten stimmt qualitativ mit experimentellen Ergebnissen überein. Für relativ schwache Überlappung folgt das Verhalten des Drucks dem theoretisch vorhergesagten 1/D Skalengesetz. Darüber hinaus liefert die Simulationsuntersuchung neue Daten zum Verständnis der Wechselwirkung zwischen Polyelektrolyt Bürsten. KW - Molekulardynamik KW - Polyelektrolyt KW - molecular dynamics KW - polyelectrolyte brushes Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-7005 ER - TY - JOUR A1 - Müssig, Carsten A1 - Lisso, Janina A1 - Coll-Garcia, Danahe A1 - Altmann, Thomas T1 - Molecular analysis of brassinosteroid action N2 - Brassinosteroids (BRs) are steroidal plant hormones with important regulatory roles in various physiological processes, including growth, xylem differentiation, disease resistance, and stress tolerance. Several components of the BR signal transduction pathway have been identified. The extracellular domains of receptor kinases such as BRI1 perceive BRs and transduce the signal via intracellular kinase domains. Within the cell further kinases and phosphatases determine the phosphorylation status of transcription factors such as BES1 and BZR1. These factors mediate major BR effects. Studies of BR-regulated genes shed light on the molecular mode of BR action. Genes encoding cell-wall-modifying enzymes, enzymes of the BR biosynthetic pathway, transcription factors, and proteins involved in primary and secondary metabolism are subject to BR-regulation. Gene expression data also point at interactions with other phytohormones and a role of BR in stress responses. This article gives a survey of the BR-signaling pathway. Two BR-responsive genes, OPR3 and EXO, are described in detail Y1 - 2006 UR - http://www3.interscience.wiley.com/cgi-bin/issn?DESCRIPTOR=PRINTISSN&VALUE=1435-8603 U6 - https://doi.org/10.1055/s-2005-873043 ER - TY - JOUR A1 - Ocheretnij, Vitalij A1 - Gössel, Michael A1 - Sogomonyan, Egor S. A1 - Marienfeld, Daniel T1 - Modulo p=3 checking for a carry select adder N2 - In this paper a self-checking carry select adder is proposed. The duplicated adder blocks which are inherent to a carry select adder without error detection are checked modulo 3. Compared to a carry select adder without error detection the delay of the MSB of the sum of the proposed adder does not increase. Compared to a self-checking duplicated carry select adder the area is reduced by 20%. No restrictions are imposed on the design of the adder blocks Y1 - 2006 UR - http://www.springerlink.com/content/100286 U6 - https://doi.org/10.1007/s10836-006-6260-8 ER - TY - THES A1 - von dem Bussche, Jens T1 - Modelling the spatial distribution of blackbird (Turdus merula) and ring ouzel (Turdus torquatus) in Switzerland N2 - To characterise the habitat preferences of ring ouzel (Turdus torquatus) and blackbird (T. merula) in Switzerland, we adopt species distribution modelling and predict the species’ spatial distribution. We model on two different scales to analyse in how far downscaling leads to a different set of predictors to describe the realised habitat best. While the models on macroscale (grid of one square kilometre) cover the entire country, we select a set of smaller plots for modelling on territory scale. Whereas ring ouzels occur in altitudes above 1’000 m a.s.l. only, blackbirds occur from the lowlands up to the timber line. The altitudinal range overlap of the two species is up to 400 m. Despite both species coexist on macroscale, a direct niche overlap on territory scale is rare. Small-scale differences in vegetation cover and structure seem to play a dominant role for habitat selection. On macroscale however, we observe a high dependency on climatic variables mainly representing the altitudinal range and the related forest structure preferred by the two species. Applying the models for climate change scenarios, we predict a decline of suitable habitat for the ring ouzel with a simultaneous median altitudinal shift of +440 m until 2070. In contrast, the blackbird is predicted to benefit from higher temperatures and expand its range to higher elevations. N2 - Unter Verwendung von Habitatmodellen beschreiben wir die Habitatpräferenz von Amsel (Turdus merula) und Ringdrossel (T. torquatus) in der Schweiz. Mit Hilfe verschiedener Klimaszenarien prognostizieren wir zudem die künftige potentielle Verbreitung beider Arten. Zur Beschreibung eines eventuell auftretenden Skalensprungs, d.h. einer Änderung in der Beschreibungskraft der Variablen auf verschiedenen räumlichen Ebenen, erstellten wir Modelle auf zwei unterschiedlichen Skalen. Während das Modell auf Makroskala mit einer Maschenweite von einem Quadratkilometer die gesamte Schweiz abdeckt, erstellten wir zudem eine Auswahl an Untersuchungsgebieten auf Revierebene. Ringdrosseln zeigen ihren Verbreitungsschwerpunkt in der subalpinen Lage, während Amseln vornehmlich das Tiefland und die Tallagen besiedeln und nur vereinzelt in hohe Lagen vordringen. In einem Gürtel von ungefähr 400 Höhenmetern siedeln beide Arten parallel.Trotz dieses auf der Makroskala erkennbaren Überschneidungsbereiches konnten wir in unserer Untersuchung auf Revierebene, von einer Ausnahme abgesehen, keine Koexistenz beobachten. Kleinräumige Unterschiede in der Habitatstruktur, insbesondere in der Vegetationsbedeckung scheinen demnach für die Habitatselektion von maßgeblicher Bedeutung zu sein. Auf Makroebene hingegen wurde der Einfluss klimatischer Variablen deutlich, die neben der Höhenlage auch dort typische Vegetationsstrukturen widerspiegeln. Wie die Klimaszenarien zeigen, nehmen geeignete Ringdrosselhabitate bei steigenden Temperaturen ab und die Art weicht im Mittel um 440 m in höhere Lagen zurück. Für Amseln scheint sich eine zunehmende Erwärmung jedoch positiv auszuwirken, während das Verbreitungsgebiet im Tiefland beibehalten wird, dringt sie von den Tälern ausgehend zunehmend in höhere Lagen vor. KW - Klimaszenarien KW - Habitatpräferenz KW - Skalenabhängigkeit KW - Habitatmodellierung KW - Turdus sp. KW - Climate change scenarios KW - Habitat preferences KW - Scale dependency KW - Species distribution modelling KW - Turdus sp. Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-14012 ER - TY - JOUR A1 - Tietjen, Britta A1 - Huth, Andreas T1 - Modelling dynamics of managed tropical rainforests - An aggregated approach JF - Ecological modelling : international journal on ecological modelling and engineering and systems ecolog N2 - The overuse of rainforests in the last century and its consequences necessitate a rethinking of logging policies. To this end models have been developed to simulate rainforest dynamics and to allow optional management strategies to be evaluated. Parameterisation of presently existing models for a certain site needs a lot of work, thus the parameterisation effort is too high to apply the models to a wide range of rainforests. Hence, in this paper we introduce the simplified model FORREG using the knowledge we have gained from a more complex model, FORMIX3-Q. The FORREG model uses differential equations to determine the volume growth of three successional species groups. Parameterisation is simplified by a genetic algorithm, which determines the required internal model parameters from characteristics of the forest dynamics. The new model is employed to assess the sustainability of various logging policies in terms of yield and damage. Results for three forests are discussed: (1) the tropical lowland rain forest in the Deramakot Forest Reserve, (2) the Lambir National Park in Malaysia and (3) a subtropical forest in Paraguay. Our model reproduces both undisturbed forest dynamics and dynamics of logged forests simulated with FORMIX3-Q very well. However, the resultant volumes of yield and damage differ slightly from those gained by FORMIX3-Q if short logging cycles are simulated. Choosing longer logging cycles leads to a good correspondence of both models. For the Deramakot Forest Reserve different logging cycles are compared and discussed. (c) 2006 Elsevier B.V. All rights reserved. KW - aggregation KW - differential equation KW - forest model KW - genetic algorithm KW - logging KW - tropical rainforest Y1 - 2006 U6 - https://doi.org/10.1016/j.ecolmodel.2005.11.045 SN - 0304-3800 VL - 199 IS - 4 SP - 421 EP - 432 PB - Elsevier CY - Amsterdam ER -