TY - JOUR A1 - Gupta, Banshi D. A1 - Pathak, Anisha A1 - Shrivastav, Anand T1 - Optical Biomedical Diagnostics Using Lab-on-Fiber Technology BT - a review JF - Photonics : open access journal N2 - Point-of-care and in-vivo bio-diagnostic tools are the current need for the present critical scenarios in the healthcare industry. The past few decades have seen a surge in research activities related to solving the challenges associated with precise on-site bio-sensing. Cutting-edge fiber optic technology enables the interaction of light with functionalized fiber surfaces at remote locations to develop a novel, miniaturized and cost-effective lab on fiber technology for bio-sensing applications. The recent remarkable developments in the field of nanotechnology provide innumerable functionalization methodologies to develop selective bio-recognition elements for label free biosensors. These exceptional methods may be easily integrated with fiber surfaces to provide highly selective light-matter interaction depending on various transduction mechanisms. In the present review, an overview of optical fiber-based biosensors has been provided with focus on physical principles used, along with the functionalization protocols for the detection of various biological analytes to diagnose the disease. The design and performance of these biosensors in terms of operating range, selectivity, response time and limit of detection have been discussed. In the concluding remarks, the challenges associated with these biosensors and the improvement required to develop handheld devices to enable direct target detection have been highlighted. KW - fiber optic sensors KW - synthesis KW - interferometry KW - fluorescence KW - SERS KW - SPR KW - immunosensors KW - enzymatic sensors KW - molecular imprinted polymers Y1 - 2022 U6 - https://doi.org/10.3390/photonics9020086 SN - 2304-6732 VL - 9 IS - 2 PB - MDPI CY - Basel ER - TY - JOUR A1 - Eerqing, Narima A1 - Subramanian, Sivaraman A1 - Rubio Jimenez, Jesus A1 - Lutz, Tobias A1 - Wu, Hsin-Yu A1 - Anders, Janet A1 - Soeller, Christian A1 - Vollmer, Frank T1 - Comparing transient oligonucleotide hybridization kinetics using DNA-PAINT and optoplasmonic single-molecule sensing on gold nanorods JF - ACS photonics / American Chemical Society N2 - We report a comparison of two photonic techniques for single-molecule sensing: fluorescence nanoscopy and optoplasmonic sensing. As the test system, oligonucleotides with and without fluorescent labels are transiently hybridized to complementary "docking" strands attached to gold nanorods. Comparing the measured single-molecule kinetics helps to examine the influence of the fluorescent labels as well as factors arising from different sensing geometries. Our results demonstrate that DNA dissociation is not significantly altered by the fluorescent labels and that DNA association is affected by geometric factors in the two techniques. These findings open the door to exploiting plasmonic sensing and fluorescence nanoscopy in a complementary fashion, which will aid in building more powerful sensors and uncovering the intricate effects that influence the behavior of single molecules. KW - single-molecule KW - plasmonics KW - whispering gallery modes KW - optoplasmonic KW - DNA-PAINT KW - fluorescence KW - localization microscopy Y1 - 2021 U6 - https://doi.org/10.1021/acsphotonics.1c01179 SN - 2330-4022 VL - 8 IS - 10 SP - 2882 EP - 2888 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Schwarze, Thomas A1 - Riemer, Janine T1 - Highly K+ selective probes with fluorescence emission wavelengths higher than 500 nm in water JF - ChemistrySelect N2 - Herein, we report on the synthesis of highly K+/Na+ selective fluorescent probes in a feasible number of synthetic steps. These K+ selective fluorescent probes, so called fluoroionophores, 1 and 2 consists of different highly K+/Na+ selective building blocks the alkoxy-substituted N-phenylaza-18-crown-6 lariat ethers (ionophores) and "green" (cf. coumarin unit in 1) or "red" (cf. nile red unit in 2) fluorescent moieties (fluorophores). The fluorescent probes 1 and 2 show K+ induced fluorescence enhancement factors of 4.1 for 1 and 1.9 for 2 and dissociation constants for the corresponding K+ complexes of 43 mM (1+K+) and 18 mM (2+K+) in buffered aqueous solution. The fluorescence signal of 1 and 2 is changed by less than 5 % by pH values in the range of 6.8 to 8.8. Thus, 1 and 2 are capable fluorescent tools to determine extracellular K+ levels by fluorescence enhancements at wavelengths higher than 500 nm. KW - potassium KW - sodium KW - fluorescence KW - selectivity KW - probes Y1 - 2020 U6 - https://doi.org/10.1002/slct.202003785 SN - 2365-6549 VL - 5 IS - 42 SP - 13174 EP - 13178 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Schwarze, Thomas T1 - Determination of Pd2+ by fluorescence enhancement caused by an off-switching of an energy- and an electron transfer JF - ChemistrySelect N2 - In this paper, we introduce a fluorescent dye 1, which is able to detect selectively Pd2+ by a clear fluorescence enhancement (FE) in THF. In the presence of eight Pd2+ equivalents, we observed a fluorescence enhancement factor (FEF) of 28.3. The high Pd2+ induced FEF can be explained by an off switching of multiple quenching processes within 1 by Pd2+. In the free dye 1 a photoinduced electron transfer (PET) and energy transfer (ET) takes place and quenches the anthracenic fluorescence. The coordination of eight Pd2+ units by the alkylthio-substituted porphyrazine receptor suppresses the PET and ET quenching process and the anthracenic fluorescence is switched on. KW - Palladium ion KW - electron transfer KW - energy transfer KW - fluorescence KW - porphyrazine Y1 - 2021 U6 - https://doi.org/10.1002/slct.202003975 SN - 2365-6549 VL - 6 IS - 3 SP - 318 EP - 322 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Schwarze, Thomas A1 - Sprenger, Tobias A1 - Riemer, Janine T1 - 1,2,3-Triazol-1,4-diyl-Fluoroionophores for Zn2+, Mg2+ and Ca2+ based on Fluorescence Intensity Enhancements in Water JF - ChemistrySelect N2 - Herein, we represent cation-responsive fluorescent probes for the divalent cations Zn2+, Mg2+ and Ca2+, which show cation-induced fluorescence enhancements (FE) in water. The Zn2+-responsive probes Zn1, Zn2, Zn3 and Zn4 are based on o-aminoanisole-N,N-diacetic acid (AADA) derivatives and show in the presence of Zn2+ FE factors of 11.4, 13.9, 6.1 and 8.2, respectively. Most of all, Zn1 and Zn2 show higher Zn2+ induced FE than the regioisomeric triazole linked fluorescent probes Zn3 and Zn4, respectively. In this set, ZN2 is the most suitable probe to detect extracellular Zn2+ levels. For the Mg2+-responsive fluorescent probes Mg1, Mg2 and Mg3 based on o-aminophenol-N,N,O-triacetic acid (APTRA) derivatives, we also found that the regioisomeric linkage influences the fluorescence responds towards Mg2+ (Mg1+100 mM Mg2+ (FEF=13.2) and Mg3+100 mM Mg2+ (FEF=2.1)). Mg2 shows the highest Mg2+-induced FE by a factor of 25.7 and an appropriate K-d value of 3 mM to measure intracellular Mg2+ levels. Further, the Ca2+-responsive fluorescent probes Ca1 and Ca2 equipped with a 1,2-bis(o-aminophenoxy)ethane-N,N,N',N'-tetraacetic acid (BAPTA) derivative show high Ca2+-induced FEs (Ca1 (FEF=22.1) and Ca2 (FEF=23.0)). Herein, only Ca1 (K-d=313 nM) is a suitable Ca2+ fluorescent indicator to determine intracellular Ca2+ levels. KW - calcium KW - fluorescence KW - magnesium KW - probes KW - zinc Y1 - 2020 U6 - https://doi.org/10.1002/slct.202003695 SN - 2365-6549 VL - 5 IS - 41 SP - 12727 EP - 12735 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Dunsing, Valentin A1 - Petrich, Annett A1 - Chiantia, Salvatore T1 - Multicolor fluorescence fluctuation spectroscopy in living cells via spectral detection JF - eLife N2 - Signaling pathways in biological systems rely on specific interactions between multiple biomolecules. Fluorescence fluctuation spectroscopy provides a powerful toolbox to quantify such interactions directly in living cells. Cross-correlation analysis of spectrally separated fluctuations provides information about intermolecular interactions but is usually limited to two fluorophore species. Here, we present scanning fluorescence spectral correlation spectroscopy (SFSCS), a versatile approach that can be implemented on commercial confocal microscopes, allowing the investigation of interactions between multiple protein species at the plasma membrane. We demonstrate that SFSCS enables cross-talk-free cross-correlation, diffusion, and oligomerization analysis of up to four protein species labeled with strongly overlapping fluorophores. As an example, we investigate the interactions of influenza A virus (IAV) matrix protein 2 with two cellular host factors simultaneously. We furthermore apply raster spectral image correlation spectroscopy for the simultaneous analysis of up to four species and determine the stoichiometry of ternary IAV polymerase complexes in the cell nucleus. KW - fluorescence KW - optical microscopy KW - virus assembly KW - protein-protein KW - interactions KW - diffusion KW - Viruses Y1 - 2021 U6 - https://doi.org/10.7554/eLife.69687 SN - 2050-084X VL - 10 PB - eLife Sciences Publications CY - Cambridge ER - TY - JOUR A1 - Schwarze, Thomas A1 - Kelling, Alexandra A1 - Sperlich, Eric A1 - Holdt, Hans-Jürgen T1 - Influence of regioisomerism in 9-anthracenyl-substituted dithiodicyanoethene derivatives on photoinduced electron transfer controlled by intramolecular charge transfer JF - ChemPhotoChem N2 - In this paper, we report on the fluorescence behaviour of three regioisomers which consist of two 9-anthracenyl fluorophores and of differently substituted dithiodicyanoethene moieties. These isomeric fluorescent probes show different quantum yields (phi(f)). In these probes, an oxidative photoinduced electron transfer (PET) from the excited 9-anthracenyl fluorophore to the dithiodicyanoethene unit quenches the fluorescence. This quenching process is accelerated by an intramolecular charge transfer (ICT) of the push-pull pi-electron system of the dithiodicyanoethene group. The acceleration of the PET depends on the strength of the ICT unit. The higher the dipole moment of the ICT unit, the stronger the observed fluorescence quenching. To the best of our knowledge, this is the first report of a regioisomeric influence on an oxidative PET by an ICT. KW - anthracene KW - charge transfer KW - electron transfer KW - fluorescence KW - isomerism Y1 - 2021 U6 - https://doi.org/10.1002/cptc.202100070 SN - 2367-0932 VL - 5 IS - 10 SP - 911 EP - 914 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Schwarze, Thomas A1 - Riemer, Janine A1 - Holdt, Hans-Jürgen T1 - A Ratiometric Fluorescent Probe for K+ in Water Based on a Phenylaza-18-Crown-6 Lariat Ether JF - Chemistry - a European journal N2 - This work presents two molecular fluorescent probes 1 and 2 for the selective determination of physiologically relevant K+ levels in water based on a highly K+/Na+ selective building block, the o-(2-methoxyethoxy)phenylaza-18-crown-6 lariat ether unit. Fluorescent probe 1 showed a high K+-induced fluorescence enhancement (FE) by a factor of 7.7 of the anthracenic emission and a dissociation constant (K-d) value of 38mm in water. Further, for 2+K+, we observed a dual emission behavior at 405 and 505nm. K+ increases the fluorescence intensity of 2 at 405nm by a factor of approximately 4.6 and K+ decreases the fluorescence intensity at 505nm by a factor of about 4.8. Fluorescent probe 2+K+ exhibited a K-d value of approximately 8mm in Na+-free solutions and in combined K+/Na+ solution a similar K-d value of about 9mm was found, reflecting the high K+/Na+ selectivity of 2 in water. Therefore, 2 is a promising fluorescent tool to measure ratiometrically and selectively physiologically relevant K+ levels. KW - charge transfer KW - crown compounds KW - fluorescence KW - potassium KW - ratiometric sensors Y1 - 2018 U6 - https://doi.org/10.1002/chem.201802306 SN - 0947-6539 SN - 1521-3765 VL - 24 IS - 40 SP - 10116 EP - 10121 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Beisner, Beatrix E. A1 - Grossart, Hans-Peter A1 - Gasol, Josep M. T1 - A guide to methods for estimating phago-mixotrophy in nanophytoplankton JF - Journal of plankton research N2 - Growing attention to phytoplankton mixotrophy as a trophic strategy has led to significant revisions of traditional pelagic food web models and ecosystem functioning. Although some empirical estimates of mixotrophy do exist, a much broader set of in situ measurements are required to (i) identify which organisms are acting as mixotrophs in real time and to (ii) assess the contribution of their heterotrophy to biogeochemical cycling. Estimates are needed through time and across space to evaluate which environmental conditions or habitats favour mixotrophy: conditions still largely unknown. We review methodologies currently available to plankton ecologists to undertake estimates of plankton mixotrophy, in particular nanophytoplankton phago-mixotrophy. Methods are based largely on fluorescent or isotopic tracers, but also take advantage of genomics to identify phylotypes and function. We also suggest novel methods on the cusp of use for phago-mixotrophy assessment, including single-cell measurements improving our capacity to estimate mixotrophic activity and rates in wild plankton communities down to the single-cell level. Future methods will benefit from advances in nanotechnology, micromanipulation and microscopy combined with stable isotope and genomic methodologies. Improved estimates of mixotrophy will enable more reliable models to predict changes in food web structure and biogeochemical flows in a rapidly changing world. KW - flow cytometry KW - phagotrophy KW - phytoplankton KW - methods KW - fluorescence KW - microscopy KW - FISH KW - isotopic methods KW - phylotypes KW - carbon flows KW - gene sequencing Y1 - 2019 U6 - https://doi.org/10.1093/plankt/fbz008 SN - 0142-7873 SN - 1464-3774 VL - 41 IS - 2 SP - 77 EP - 89 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Broeker, Nina K. A1 - Roske, Yvette A1 - Valleriani, Angelo A1 - Stephan, Mareike Sophia A1 - Andres, Dorothee A1 - Koetz, Joachim A1 - Heinemann, Udo A1 - Barbirz, Stefanie T1 - Time-resolved DNA release from an O-antigen-specific Salmonella bacteriophage with a contractile tail JF - The journal of biological chemistry N2 - Myoviruses, bacteriophages with T4-like architecture, must contract their tails prior to DNA release. However, quantitative kinetic data on myovirus particle opening are lacking, although they are promising tools in bacteriophage-based antimicrobial strategies directed against Gram-negative hosts. For the first time, we show time-resolved DNA ejection from a bacteriophage with a contractile tail, the multi-O-antigen-specific Salmonella myovirus Det7. DNA release from Det7 was triggered by lipopolysaccharide (LPS) O-antigen receptors and notably slower than in noncontractile-tailed siphoviruses. Det7 showed two individual kinetic steps for tail contraction and particle opening. Our in vitro studies showed that highly specialized tailspike proteins (TSPs) are necessary to attach the particle to LPS. A P22-like TSP confers specificity for the Salmonella Typhimurium O-antigen. Moreover, crystal structure analysis at 1.63 angstrom resolution confirmed that Det7 recognized the Salmonella Anatum O-antigen via an E15-like TSP, DettilonTSP. DNA ejection triggered by LPS from either host showed similar velocities, so particle opening is thus a process independent of O-antigen composition and the recognizing TSP. In Det7, at permissive temperatures TSPs mediate O-antigen cleavage and couple cell surface binding with DNA ejection, but no irreversible adsorption occurred at low temperatures. This finding was in contrast to short-tailed Salmonella podoviruses, illustrating that tailed phages use common particle-opening mechanisms but have specialized into different infection niches. KW - bacteriophage KW - lipopolysaccharide (YLPS) KW - structural biology KW - DNA viruses KW - glycobiology KW - fluorescence KW - Salmonella enterica KW - contractile tail KW - DNA ejection KW - O-antigen specificity KW - Salmonella myovirus KW - tailspike protein KW - molecular machine Y1 - 2019 U6 - https://doi.org/10.1074/jbc.RA119.008133 SN - 1083-351X VL - 294 IS - 31 SP - 11751 EP - 11761 PB - American Society for Biochemistry and Molecular Biology CY - Bethesda ER -