TY - JOUR A1 - Uhr, Linda A1 - Buchholz, Tina A1 - Homann, Thomas A1 - Huschek, Gerd A1 - Rawel, Harshadrai Manilal T1 - Targeted proteomics-based analysis of technical enzymes from fungal origin in baked products JF - Journal of cereal science N2 - The application of technical enzymes is a potential tool in modulating the dough and baking quality of cereal products. No endogenous amylases (alpha- and beta-forms) are present in mature wheat grains; they may be synthesized or activated during germination. Hence, microbial alpha-amylases are added to the dough, being resistant to the endogenous alpha-amylase/trypsin inhibitors. Here, we report on the initial identification of two technical enzymes from a commercial sample based on an in-gel tryptic digestion coupled with MALDI-MS analysis. The primary component of the protein fraction with 51.3 kDa was alpha-amylase from Aspergillus species. A second major protein with 24.8 kDa was identified as endo-1,4-xylanase from Thermomyces lanuginosus. In the following experimental work up, a targeted proteomics approach utilizing the combination of specific proteolytic digestion of the added amylase and xylanase in wheat flour, dough or baked products, solid phase extraction of released peptides and their detection using LC-MS/MS was optimized. The targeted (MRM) MS/MS peptide signals showed that the peptide "ALSSALHER" (MW = 983) originating from amylase and "GWNPGLNAR" (MW = 983) from xylanase can be used to identify the corresponding technical enzymes added. Consequently, locally available baked products were tested and found to contain these enzymes as supplementary ingredients. (C) 2014 Elsevier Ltd. All rights reserved. KW - Technical enzymes KW - Amylase KW - Xylanase KW - Mass spectrometry Y1 - 2014 U6 - https://doi.org/10.1016/j.jcs.2014.04.007 SN - 0733-5210 SN - 1095-9963 VL - 60 IS - 2 SP - 440 EP - 447 PB - Elsevier CY - London ER - TY - JOUR A1 - Zaccheus, Mona V. A1 - Bröker, Nina Kristin A1 - Lundborg, Magnus A1 - Uetrecht, Charlotte A1 - Barbirz, Stefanie A1 - Widmalm, Goran T1 - Structural studies of the O-antigen polysaccharide from Escherichia coli TD2158 having O18 serogroup specificity and aspects of its interaction with the tailspike endoglycosidase of the infecting bacteriophage HK620 JF - Carbohydrate research N2 - We have analyzed the O-antigen polysaccharide of the previously uncharacterized Escherichia coli strain TD2158 which is a host of bacteriophage HK620. This bacteriophage recognizes and cleaves the polysaccharide with its tailspike protein (TSP). The polysaccharide preparation as well as oligosaccharides obtained from HK620TSP endoglycosidase digests were analyzed with NMR spectroscopy. Additionally, sugar analysis was performed on the O-antigen polysaccharide and MALDI-TOF MS was used in oligosaccharide analysis. The present study revealed a heterogeneous polysaccharide with a hexasaccharide repeating unit of the following structure: alpha-D-Glcp-(1 -> 6) vertical bar vertical bar 2)-alpha-L-Rhap-(1 -> 6)-alpha-D-Glcp-(1 -> 4)-alpha-D-Galp-(1 -> 3)-alpha-D-GlcpNAc- (1 ->vertical bar beta-D-Glcp/beta-D-GlcpNAc-(1 -> 3) A repeating unit with a D-GlcNAc substitution of D-Gal has been described earlier as characteristic for serogroup O18A1. Accordingly, we termed repeating units with D-Glc substitution at D-Gal as O18A2. NMR analyses of the polysaccharide confirmed that O18A1- and O18A2-type repeats were present in a 1:1 ratio. However, HK620TSP preferentially bound the D-GlcNAc- substituted O18A1-type repeating units in its high affinity binding pocket with a dissociation constant of 140 mu M and disfavored the O18A2-type having a beta-D-Glcp-(1 -> 3)-linked group. As a result, in hexasaccharide preparations, O18A1 and O18A2 repeats were present in a 9: 1 ratio stressing the clear preference of O18A1- type repeats to be cleaved by HK620TSP. KW - Escherichia coli KW - Tailspike KW - Endoglycosidase KW - Lipopolysaccharide KW - NMR KW - Mass spectrometry Y1 - 2012 U6 - https://doi.org/10.1016/j.carres.2012.05.022 SN - 0008-6215 VL - 357 IS - 8 SP - 118 EP - 125 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Srama, Ralf A1 - Krueger, H. A1 - Yamaguchi, T. A1 - Stephan, T. A1 - Burchell, M. A1 - Kearsley, A. T. A1 - Sterken, V. A1 - Postberg, F. A1 - Kempf, S. A1 - Grün, Eberhard A1 - Altobelli, Nicolas A1 - Ehrenfreund, P. A1 - Dikarev, V. A1 - Horanyi, M. A1 - Sternovsky, Zoltan A1 - Carpenter, J. D. A1 - Westphal, A. A1 - Gainsforth, Z. A1 - Krabbe, A. A1 - Agarwal, Jessica A1 - Yano, H. A1 - Blum, J. A1 - Henkel, H. A1 - Hillier, J. A1 - Hoppe, P. A1 - Trieloff, M. A1 - Hsu, S. A1 - Mocker, A. A1 - Fiege, K. A1 - Green, S. F. A1 - Bischoff, A. A1 - Esposito, F. A1 - Laufer, R. A1 - Hyde, T. W. A1 - Herdrich, G. A1 - Fasoulas, S. A1 - Jaeckel, A. A1 - Jones, G. A1 - Jenniskens, P. A1 - Khalisi, E. A1 - Moragas-Klostermeyer, Georg A1 - Spahn, Frank A1 - Keller, H. U. A1 - Frisch, P. A1 - Levasseur-Regourd, A. C. A1 - Pailer, N. A1 - Altwegg, K. A1 - Engrand, C. A1 - Auer, S. A1 - Silen, J. A1 - Sasaki, S. A1 - Kobayashi, M. A1 - Schmidt, J. A1 - Kissel, J. A1 - Marty, B. A1 - Michel, P. A1 - Palumbo, P. A1 - Vaisberg, O. A1 - Baggaley, J. A1 - Rotundi, A. A1 - Roeser, H. P. T1 - SARIM PLUS-sample return of comet 67P/CG and of interstellar matter JF - EXPERIMENTAL ASTRONOMY N2 - The Stardust mission returned cometary, interplanetary and (probably) interstellar dust in 2006 to Earth that have been analysed in Earth laboratories worldwide. Results of this mission have changed our view and knowledge on the early solar nebula. The Rosetta mission is on its way to land on comet 67P/Churyumov-Gerasimenko and will investigate for the first time in great detail the comet nucleus and its environment starting in 2014. Additional astronomy and planetary space missions will further contribute to our understanding of dust generation, evolution and destruction in interstellar and interplanetary space and provide constraints on solar system formation and processes that led to the origin of life on Earth. One of these missions, SARIM-PLUS, will provide a unique perspective by measuring interplanetary and interstellar dust with high accuracy and sensitivity in our inner solar system between 1 and 2 AU. SARIM-PLUS employs latest in-situ techniques for a full characterisation of individual micrometeoroids (flux, mass, charge, trajectory, composition()) and collects and returns these samples to Earth for a detailed analysis. The opportunity to visit again the target comet of the Rosetta mission 67P/Churyumov-Gerasimeenternko, and to investigate its dusty environment six years after Rosetta with complementary methods is unique and strongly enhances and supports the scientific exploration of this target and the entire Rosetta mission. Launch opportunities are in 2020 with a backup window starting early 2026. The comet encounter occurs in September 2021 and the reentry takes place in early 2024. An encounter speed of 6 km/s ensures comparable results to the Stardust mission. KW - Interstellar dust KW - Cometary dust KW - Churyumov Gerasimenko KW - Interplanetary dust KW - IMF KW - Cosmic vision KW - Sample return KW - Dust collector KW - Mass spectrometry Y1 - 2012 U6 - https://doi.org/10.1007/s10686-011-9285-7 SN - 0922-6435 SN - 1572-9508 VL - 33 IS - 2-3 SP - 723 EP - 751 PB - SPRINGER CY - DORDRECHT ER - TY - JOUR A1 - Folikumah, Makafui Y. A1 - Behl, Marc A1 - Lendlein, Andreas T1 - Reaction behaviour of peptide-based single thiol-thioesters exchange reaction substrate in the presence of externally added thiols JF - MRS communications / a publication of the Materials Research Society N2 - Identification of patterns in chemical reaction pathways aids in the effective design of molecules for specific applications. Here, we report on model reactions with a water-soluble single thiol-thioester exchange (TTE) reaction substrate, which was designed taking in view biological and medical applications. This substrate consists of the thio-depsipeptide, Ac-Pro-Leu-Gly-SLeu-Leu-Gly-NEtSH (TDP) and does not yield foul-smelling thiol exchange products when compared with aromatic thiol containing single TTE substrates. TDP generates an alpha,omega-dithiol crosslinker in situ in a 'pseudo intramolecular' TTE. Competitive intermolecular TTE of TDP with externally added "basic" thiols increased the crosslinker concentration whilst "acidic" thiols decreased its concentration. TDP could potentially enable in situ bioconjugation and crosslinking applications. KW - Biomaterials KW - Biomimetic KW - Mass spectrometry KW - Nuclear magnetic resonance KW - (NMR) Y1 - 2021 U6 - https://doi.org/10.1557/s43579-021-00041-z SN - 2159-6859 SN - 2159-6867 VL - 11 IS - 4 SP - 402 EP - 410 PB - Springer CY - Berlin ER - TY - JOUR A1 - Riebe, Daniel A1 - Laudien, Robert A1 - Brendler, Christian A1 - Beitz, Toralf A1 - Löhmannsröben, Hans-Gerd T1 - Laser ionization of H2S and ion-molecule reactions of H3S+ in laser-based ion mobility spectrometry and drift cell time-of-flight mass spectrometry JF - Analytical & bioanalytical chemistry N2 - The detection of hydrogen sulfide (H2S) by 2 + 1 resonance-enhanced multi-photon ionization (REMPI) and the application of H2S as a laser dopant for the detection of polar compounds in laser ion mobility (IM) spectrometry at atmospheric pressure were investigated. Underlying ionization mechanisms were elucidated by additional studies employing a drift cell interfaced to a time-of-flight mass spectrometer. Depending on the pressure, the primary ions H2S+, HS+, S+, and secondary ions, such as H3S+, were observed. The 2 + 1 REMPI spectrum of H2S near lambda = 302.5 nm was recorded at atmospheric pressure. Furthermore, the limit of detection and the linear range were established. In the second part of the work, H2S was investigated as an H2O analogous laser dopant for the ionization of polar substances by proton transfer. H2S exhibits a proton affinity (PA) similar to that of H2O, but a significantly lower ionization energy facilitating laser ionization. Ion-molecule reactions (IMR) of H3S+ with a variety of polar substances with PA between 754.6 and 841.6 kJ/mol were investigated. Representatives of different compound classes, including alcohols, ketones, esters, and nitroaromatics were analyzed. The IM spectra resulting from IMR of H3S+ and H3O+ with these substances are similar in structure, i.e., protonated monomer and dimer ion peaks are found depending on the analyte concentration. KW - Ion mobility spectrometry KW - Mass spectrometry KW - REMPI KW - Hydrogen sulfide KW - Proton transfer reaction Y1 - 2013 U6 - https://doi.org/10.1007/s00216-013-7186-5 SN - 1618-2642 VL - 405 IS - 22 SP - 7031 EP - 7039 PB - Springer CY - Heidelberg ER - TY - JOUR A1 - Brendler, Christian A1 - Riebe, Daniel A1 - Ritschel, Thomas A1 - Beitz, Toralf A1 - Löhmannsröben, Hans-Gerd T1 - Investigation of neuroleptics and other aromatic compounds by laser-based ion mobility mass spectrometry JF - Analytical & bioanalytical chemistry N2 - Laser-based ion mobility (IM) spectrometry was used for the detection of neuroleptics and PAH. A gas chromatograph was connected to the IM spectrometer in order to investigate compounds with low vapour pressure. The substances were ionized by resonant two-photon ionization at the wavelengths lambda = 213 and 266 nm and pulse energies between 50 and 300 mu J. Ion mobilities, linear ranges, limits of detection and response factors are reported. Limits of detection for the substances are in the range of 1-50 fmol. Additionally, the mechanism of laser ionization at atmospheric pressure was investigated. First, the primary product ions were determined by a laser-based time-of-flight mass spectrometer with effusive sample introduction. Then, a combination of a laser-based IM spectrometer and an ion trap mass spectrometer was developed and characterized to elucidate secondary ion-molecule reactions that can occur at atmospheric pressure. Some substances, namely naphthalene, anthracene, promazine and thioridazine, could be detected as primary ions (radical cations), while other substances, in particular acridine, phenothiazine and chlorprothixene, are detected as secondary ions (protonated molecules). The results are interpreted on the basis of quantum chemical calculations, and an ionization mechanism is proposed. KW - Ion mobility spectrometry KW - Mass spectrometry KW - Gas chromatography KW - Laser ionization KW - REMPI KW - Neuroleptics Y1 - 2013 U6 - https://doi.org/10.1007/s00216-012-6654-7 SN - 1618-2642 VL - 405 IS - 22 SP - 7019 EP - 7029 PB - Springer CY - Heidelberg ER - TY - JOUR A1 - Uhr, Linda A1 - Wieland, Phillis A1 - Homann, Thomas A1 - Huschek, Gerd A1 - Rawel, Harshadrai Manilal T1 - Identification and LC-MS/MS-based analyses of technical enzymes in wheat flour and baked products JF - European food research and technology : official organ of the EuCheMS, Division of Food Chemistry N2 - The use of technical enzymes in bakery industry is necessary for a consistent and good quality of baked products. Since the cultivation of cereals leads to low amounts of endogenous enzymes being present, a need of their commercial alternatives is becoming a routine process in order to meet the consumer quality demands. Targeted quantification proteomics-based methods are necessary for their detection to meet the regulatory criteria. Here, we initially report on the identification of Lipase FE-01, a lipase from fungus Thermomyces lanuginosus, as analyzed by SDS-PAGE, in-Gel digestion, and MALDI-TOF-MS. In further experiments, the focus of the study was directed toward an extensive use and optimization of in-solution enzymatic digestion in combination with LC-MS/MS techniques in identification of specific peptide markers and finally in utilization of the latter in delivering reproducible quantification data for several different technical enzymes (alpha-amylases, xylanase, and lipases from microbial origin) in complex matrices such as baked bread and wheat flour. Two digestion protocols (a fast option using thermocycler program and the well-established overnight method) were tested, and both of these can be successfully applied. The application of isotopically labeled analogs of the MRM targeted peptides as internal standards and the addition of an internal protein standard during the extraction/digestion experiment were compared to determine the optimal quantification algorithm of the recovered enzyme concentrations. Thus, a standardized sensitive LC-MS/MS method could be developed to determine technical enzymes as forthcoming ingredients in the prefabricated food formulations in concentrations lower than 10 ppm. KW - Technical enzymes KW - Amylase KW - Xylanase KW - Lipase KW - Baked products KW - Mass spectrometry Y1 - 2016 U6 - https://doi.org/10.1007/s00217-015-2536-5 SN - 1438-2377 SN - 1438-2385 VL - 242 SP - 247 EP - 257 PB - Springer CY - New York ER - TY - JOUR A1 - Henze, Andrea A1 - Aumer, Franziska A1 - Grabner, Arthur A1 - Raila, Jens A1 - Schweigert, Florian J. T1 - Genetic differences in the serum proteome of horses, donkeys and mules are detectable by protein profiling JF - The British journal of nutrition : an international journal devoted to the science of human and animal nutrition N2 - Although horses and donkeys belong to the same genus, their genetic characteristics probably result in specific proteomes and post-translational modifications (PTM) of proteins. Since PTM can alter protein properties, specific PTM may contribute to species-specific characteristics. Therefore, the aim of the present study was to analyse differences in serum protein profiles of horses and donkeys as well as mules, which combine the genetic backgrounds of both species. Additionally, changes in PTM of the protein transthyretin (TTR) were analysed. Serum protein profiles of each species (five animals per species) were determined using strong anion exchanger ProteinChips (R) (Bio-Rad, Munich, Germany) in combination with surface-enhanced laser desorption ionisation-time of flight MS. The PTM of TTR were analysed subsequently by immunoprecipitation in combination with matrix-assisted laser desorption ionisation-time of flight MS. Protein profiling revealed species-specific differences in the proteome, with some protein peaks present in all three species as well as protein peaks that were unique for donkeys and mules, horses and mules or for horses alone. The molecular weight of TTR of horses and donkeys differed by 30Da, and both species revealed several modified forms of TTR besides the native form. The mass spectra of mules represented a merging of TTR spectra of horses and donkeys. In summary, the present study indicated that there are substantial differences in the proteome of horses and donkeys. Additionally, the results probably indicate that the proteome of mules reveal a higher similarity to donkeys than to horses. KW - Mass spectrometry KW - Post-translational modifications KW - Proteome KW - Species differences Y1 - 2011 U6 - https://doi.org/10.1017/S0007114511000845 SN - 0007-1145 VL - 106 SP - S170 EP - S173 PB - Cambridge Univ. Press CY - Cambridge ER - TY - JOUR A1 - Reichel, Martin A1 - Hoenig, Stefanie A1 - Liebisch, Gerhard A1 - Lüth, Anja A1 - Kleuser, Burkhard A1 - Gulbins, Erich A1 - Schmitz, Gerd A1 - Kornhuber, Johannes T1 - Alterations of plasma glycerophospholipid and sphingolipid species in male alcohol-dependent patients JF - Biochimica et biophysica acta : Molecular and cell biology of lipids N2 - Background: Alcohol abuse is a major risk factor for somatic and neuropsychiatric diseases. Despite their potential clinical importance, little is known about the alterations of plasma glycerophospholipid (GPL) and sphingolipid (SPL) species associated with alcohol abuse. Methods: Plasma GPL and SPL species were quantified using electrospray ionization tandem mass spectrometry in samples from 23 male alcohol-dependent patients before and after detoxification, as well as from 20 healthy male controls. Results: A comparison of alcohol-dependent patients with controls revealed higher phosphatidylcholine (PC; P-value = 0.008) and phosphatidylinositol (PI; P-value = 0.001) concentrations in patients before detoxification, and higher PI (P-value = 0.001) and phosphatidylethanolamine (PE)-based plasmalogen (PEP; P-value = 0.003) concentrations after detoxification. Lysophosphatidylcholines (LPC) were increased by acute intoxication (P-value = 0.002). Sphingomyelin (SM) concentration increased during detoxification (P-value = 0.011). The concentration of SM 23:0 was lower in patients (P-value = 2.79 x 10(-5)), and the concentrations of ceramide Cer d18:1/16:0 and Cer d18:1/18:0 were higher in patients (P-value = 2.45 x 10(-5) and 3.73 x 10(-5)). Activity of lysosomal acid sphingomyelinase (ASM) in patients correlated positively with the concentrations of eight LPC species, while activity of secreted ASM was inversely correlated with several PE, PI and PC species, and positively correlated with the molar ratio of PC to SM (Pearson's r = 0.432; P-value = 0.039). Conclusion: Plasma concentrations of numerous GPL and SPL species were altered in alcohol-dependent patients. These molecules might serve as potential biomarkers to improve the diagnosis of patients and to indicate health risks associated with alcohol abuse. Our study further indicates that there are strong interactions between plasma GPL concentrations and SPL metabolism. (C) 2015 Elsevier B.V. All rights reserved. KW - Acid sphingomyelinase KW - Alcohol dependence KW - Anxiety KW - Cardiovascular KW - Case-control study KW - Ceramide KW - Clinical KW - Depression KW - Diagnostic KW - Disease KW - Glycerophospholipids KW - Lysophosphatidylcholines KW - Mass spectrometry KW - Phosphatidylcholines KW - Phosphatidylinositols KW - Plasma KW - Plasmalogens KW - Sphingolipids KW - Sphingomyelin KW - Tandem mass spectrometry Y1 - 2015 U6 - https://doi.org/10.1016/j.bbalip.2015.08.005 SN - 1388-1981 SN - 0006-3002 VL - 1851 IS - 11 SP - 1501 EP - 1510 PB - Elsevier CY - Amsterdam ER -