TY - JOUR A1 - Angelopoulos, Michael A1 - Overduin, Pier Paul A1 - Westermann, Sebastian A1 - Tronicke, Jens A1 - Strauss, Jens A1 - Schirrmeister, Lutz A1 - Biskaborn, Boris A1 - Liebner, Susanne A1 - Maksimov, Georgii A1 - Grigoriev, Mikhail N. A1 - Grosse, Guido T1 - Thermokarst lake to lagoon transitions in Eastern Siberia BT - do submerged taliks refreeze? JF - Journal of geophysical research : Earth surface N2 - As the Arctic coast erodes, it drains thermokarst lakes, transforming them into lagoons, and, eventually, integrates them into subsea permafrost. Lagoons represent the first stage of a thermokarst lake transition to a marine setting and possibly more saline and colder upper boundary conditions. In this research, borehole data, electrical resistivity surveying, and modeling of heat and salt diffusion were carried out at Polar Fox Lagoon on the Bykovsky Peninsula, Siberia. Polar Fox Lagoon is a seasonally isolated water body connected to Tiksi Bay through a channel, leading to hypersaline waters under the ice cover. The boreholes in the center of the lagoon revealed floating ice and a saline cryotic bed underlain by a saline cryotic talik, a thin ice-bearing permafrost layer, and unfrozen ground. The bathymetry showed that most of the lagoon had bedfast ice in spring. In bedfast ice areas, the electrical resistivity profiles suggested that an unfrozen saline layer was underlain by a thick layer of refrozen talik. The modeling showed that thermokarst lake taliks can refreeze when submerged in saltwater with mean annual bottom water temperatures below or slightly above 0 degrees C. This occurs, because the top-down chemical degradation of newly formed ice-bearing permafrost is slower than the refreezing of the talik. Hence, lagoons may precondition taliks with a layer of ice-bearing permafrost before encroachment by the sea, and this frozen layer may act as a cap on gas migration out of the underlying talik. KW - thermokarst lake KW - talik KW - lagoon KW - subsea permafrost KW - salt diffusion KW - Siberia Y1 - 2020 U6 - https://doi.org/10.1029/2019JF005424 SN - 2169-9003 SN - 2169-9011 VL - 125 IS - 10 PB - American Geophysical Union CY - Washington ER - TY - JOUR A1 - Berben, Tom A1 - Bo, Franco Forlano A1 - in 't Zandt, Michiel H. A1 - Yang, Sizhong A1 - Liebner, Susanne A1 - Welte, Cornelia U. T1 - The Polar Fox Lagoon in Siberia harbours a community of Bathyarchaeota possessing the potential for peptide fermentation and acetogenesis JF - Antonie van Leeuwenhoek : international journal of general and molecular microbiology N2 - Archaea belonging to the phylum Bathyarchaeota are the predominant archaeal species in cold, anoxic marine sediments and additionally occur in a variety of habitats, both natural and man-made. Metagenomic and single-cell sequencing studies suggest that Bathyarchaeota may have a significant impact on the emissions of greenhouse gases into the atmosphere, either through direct production of methane or through the degradation of complex organic matter that can subsequently be converted into methane. This is especially relevant in permafrost regions where climate change leads to thawing of permafrost, making high amounts of stored carbon bioavailable. Here we present the analysis of nineteen draft genomes recovered from a sediment core metagenome of the Polar Fox Lagoon, a thermokarst lake located on the Bykovsky Peninsula in Siberia, Russia, which is connected to the brackish Tiksi Bay. We show that the Bathyarchaeota in this lake are predominantly peptide degraders, producing reduced ferredoxin from the fermentation of peptides, while degradation pathways for plant-derived polymers were found to be incomplete. Several genomes encoded the potential for acetogenesis through the Wood-Ljungdahl pathway, but methanogenesis was determined to be unlikely due to the lack of genes encoding the key enzyme in methanogenesis, methyl-CoM reductase. Many genomes lacked a clear pathway for recycling reduced ferredoxin. Hydrogen metabolism was also hardly found: one type 4e [NiFe] hydrogenase was annotated in a single MAG and no [FeFe] hydrogenases were detected. Little evidence was found for syntrophy through formate or direct interspecies electron transfer, leaving a significant gap in our understanding of the metabolism of these organisms. KW - Bathyarchaea KW - Siberia KW - Thermokarst KW - Peptide fermentation Y1 - 2022 U6 - https://doi.org/10.1007/s10482-022-01767-z SN - 0003-6072 SN - 1572-9699 VL - 115 SP - 1229 EP - 1244 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Cao, Xianyong A1 - Tian, Fang A1 - Dallmeyer, Anne A1 - Herzschuh, Ulrike T1 - Northern Hemisphere biome changes (> 30 degrees N) since 40 cal ka BP and their driving factors inferred from model-data comparisons JF - Quaternary science reviews : the international multidisciplinary research and review journal N2 - Ongoing and past biome transitions are generally assigned to climate and atmospheric changes (e.g. temperature, precipitation, CO2), but the major regional factors or factor combinations that drive vegetation change often remain unknown. Modelling studies applying ensemble runs can help to partition the effects of the different drivers. Such studies require careful validation with observational data. In this study, fossil pollen records from 741 sites in Europe, 728 sites in North America, and 418 sites in Asia (extracted from terrestrial archives including lake sediments) are used to reconstruct biomes at selected time slices between 40 cal ka BP (calibrated thousand years before present) and today. These results are used to validate Northern Hemisphere biome distributions (>30 degrees N) simulated by the biome model BIOME4 that has been forced with climate data simulated by a General Circulation model. Quantitative comparisons between pollen- and model-based results show a generally good fit at a broad spatial scale. Mismatches occur in central-arid Asia with a broader extent of grassland throughout the last 40 ka (likely due to the over-representation of Artemisia and Chenopodiaceae pollen) and in Europe with over-estimation of tundra at 0 cal ka BP (likely due to human impacts to some extent). Sensitivity analysis reveals that broad-scale biome changes follow the global signal of major postglacial temperature change, although the climatic variables vary in their regional and temporal importance. Temperature is the dominant variable in Europe and other rather maritime areas for biome changes between 21 and 14 ka, while precipitation is highly important in the arid inland regions of Asia and North America. The ecophysiological effect of changes in the atmospheric CO2-concentration has the highest impact during this transition than in other intervals. With respect to modern vegetation in the course of global warming, our findings imply that vegetation change in the Northern Hemisphere may be strongly limited by effective moisture changes, i.e. the combined effect of temperature and precipitation, particularly in inland areas. (C) 2019 Elsevier Ltd. All rights reserved. KW - Biomisation KW - Climate warming KW - Europe KW - Holocene KW - Model-data comparison KW - Northern Asia KW - North America KW - Pollen KW - Siberia KW - Vegetation driver Y1 - 2019 U6 - https://doi.org/10.1016/j.quascirev.2019.07.034 SN - 0277-3791 VL - 220 SP - 291 EP - 309 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Herzschuh, Ulrike T1 - Legacy of the Last Glacial on the present-day distribution of deciduous versus evergreen boreal forests JF - Global ecology and biogeography : a journal of macroecology N2 - Issue Despite their rather similar climatic conditions, eastern Eurasia and northern North America are largely covered by different plant functional types (deciduous or evergreen boreal forest) composed of larch or pine, spruce and fir, respectively. I propose that these deciduous and evergreen boreal forests represent alternative quasi-stable states, triggered by their different northern tree refugia that reflect the different environmental conditions experienced during the Last Glacial. Evidence This view is supported by palaeoecological and environmental evidence. Once established, Asian larch forests are likely to have stabilized through a complex vegetation-fire-permafrost soil-climate feedback system. Conclusion With respect to future forest developments, this implies that Asian larch forests are likely to be governed by long-term trajectories and are therefore largely resistant to natural climate variability on time-scales shorter than millennia. The effects of regional human impact and anthropogenic global warming might, however, cause certain stability thresholds to be crossed, meaning that irreversible transitions occur and resulting in marked consequences for ecosystem services on these human-relevant time-scales. KW - boreal forests KW - Glacial refugia KW - Holocene KW - Larix larch KW - permafrost ecosystems KW - Palaeoecology KW - Siberia KW - vegetation-climate-fire-soil feedbacks KW - vegetation states KW - vegetation trajectories Y1 - 2018 U6 - https://doi.org/10.1111/geb.13018 SN - 1466-822X SN - 1466-8238 VL - 29 IS - 2 SP - 198 EP - 206 PB - John Wiley & Sons, Inc. CY - Hoboken ER - TY - THES A1 - Holm, Stine T1 - Methanogenic communities and metaplasmidome-encoded functions in permafrost environments exposed to thaw N2 - This thesis investigates how the permafrost microbiota responds to global warming. In detail, the constraints behind methane production in thawing permafrost were linked to methanogenic activity, abundance and composition. Furthermore, this thesis offers new insights into microbial adaptions to the changing environmental conditions during global warming. This was assesed by investigating the potential ecological relevant functions encoded by plasmid DNA within the permafrost microbiota. Permafrost of both interglacial and glacial origin spanning the Holocene to the late Pleistocene, including Eemian, were studied during long-term thaw incubations. Furthermore, several permafrost cores of different stratigraphy, soil type and vegetation cover were used to target the main constraints behind methane production during short-term thaw simulations. Short- and long-term incubations simulating thaw with and without the addition of substrate were combined with activity measurements, amplicon and metagenomic sequencing of permanently frozen and seasonally thawed active layer. Combined, it allowed to address the following questions. i) What constraints methane production when permafrost thaws and how is this linked to methanogenic activity, abundance and composition? ii) How does the methanogenic community composition change during long-term thawing conditions? iii) Which potential ecological relevant functions are encoded by plasmid DNA in active layer soils? The major outcomes of this thesis are as follows. i) Methane production from permafrost after long-term thaw simulation was found to be constrained mainly by the abundance of methanogens and the archaeal community composition. Deposits formed during periods of warmer temperatures and increased precipitation, (here represented by deposits from the Late Pleistocene of both interstadial and interglacial periods) were found to respond strongest to thawing conditions and to contain an archaeal community dominated by methanogenic archaea (40% and 100% of all detected archaea). Methanogenic population size and carbon density were identified as main predictors for potential methane production in thawing permafrost in short-term incubations when substrate was sufficiently available. ii) Besides determining the methanogenic activity after long-term thaw, the paleoenvironmental conditions were also found to influence the response of the methanogenic community composition. Substantial shifts within methanogenic community structure and a drop in diversity were observed in deposits formed during warmer periods, but not in deposits from stadials, when colder and drier conditions occurred. Overall, a shift towards a dominance of hydrogenotrophic methanogens was observed in all samples, except for the oldest interglacial deposits from the Eemian, which displayed a potential dominance of acetoclastic methanogens. The Eemian, which is discussed to serve as an analogue to current climate conditions, contained highly active methanogenic communities. However, all potential limitation of methane production after permafrost thaw, it means methanogenic community structure, methanogenic population size, and substrate pool might be overcome after permafrost had thawed on the long-term. iii) Enrichments with soil from the seasonally thawed active layer revealed that its plasmid DNA (‘metaplasmidome’) carries stress-response genes. In particular it encoded antibiotic resistance genes, heavy metal resistance genes, cold shock proteins and genes encoding UV-protection. Those are functions that are directly involved in the adaptation of microbial communities to stresses in polar environments. It was further found that metaplasmidomes from the Siberian active layer originate mainly from Gammaproteobacteria. By applying enrichment cultures followed by plasmid DNA extraction it was possible to obtain a higher average contigs length and significantly higher recovery of plasmid sequences than from extracting plasmid sequences from metagenomes. The approach of analyzing ‘metaplasmidomes’ established in this thesis is therefore suitable for studying the ecological role of plasmids in polar environments in general. This thesis emphasizes that including microbial community dynamics have the potential to improve permafrost-carbon projections. Microbially mediated methane release from permafrost environments may significantly impact future climate change. This thesis identified drivers of methanogenic composition, abundance and activity in thawing permafrost landscapes. Finally, this thesis underlines the importance to study how the current warming Arctic affects microbial communities in order to gain more insight into microbial response and adaptation strategies. N2 - Diese Dissertation untersucht die Reaktion der Permafrost-Mikrobiota auf die globale Erwärmung. Im Detail wurden mögliche Faktoren, die die Methanproduktion in tauendem Permafrost einschränken, im Zusammenhang methanogener Aktivität, Abundanz und Gemeinschaftszusammensetzung untersucht. Darüber hinaus bietet diese Dissertation neue Einblicke in mikrobielle Anpassungen an die sich ändernden Umweltbedingungen während der globalen Erwärmung. Dies wurde durch Untersuchung der potenziell ökologisch relevanten Funktionen bewertet, die von Plasmid-DNA innerhalb der Permafrost-Mikrobiota codiert werden. Permafrost, der seinen Ursprung in den Interglazialen und Glazialen aus dem Holozän bis zum späten Pleistozän, einschließlich des Eem, hat, wurde in Langzeit-Tau-Inkubationen untersucht. Darüber hinaus wurden mehrere Permafrostkerne mit unterschiedlicher Stratigraphie, Vegetationsbedeckung und unterschiedlichem Bodentyp verwendet, um die Faktoren, die die Methanproduktion während kurzfristiger Auftausimulationen bestimmen, zu ermitteln. Kurz- und Langzeitinkubationen, die das Auftauen mit und ohne Zugabe von Substrat in Kombination mit Aktivitätsmessungen, Amplikon- und Metagenom-Sequenzierung von permanent gefrorenem und saisonal aufgetautem Boden simulieren, ermöglichten die Beantwortung folgender Fragen: i) Welche Faktoren hemmen die Methanproduktion beim Auftauen des Permafrosts und wie hängt dies mit der Aktivität, Abundanz und Zusammensetzung methanogener Organismen zusammen? ii) Wie verändert sich die Gemeinschaftszusammensetzung methanogener Organismen unter langfristigen Auftaubedingungen? iii) Welche potenziell ökologisch relevanten Funktionen werden von Plasmid-DNA in saisonal getauten Böden kodiert? Die wichtigsten Ergebnisse dieser Arbeit können wie folgt zusammengefasst werden. i) Die Methanproduktion in langfristig getautem Permafrost wird hauptsächlich durch die Anzahl der methanogenen Archaeen und ihrem Anteil innerhalb der Archaeen bestimmt. Ablagerungen, die in wärmeren Perioden mit erhöhtem Niederschlag gebildet wurden, reagierten am stärksten auf das Tauen und enthielten eine von Methanogenen dominierte Archaeen-Gemeinschaft. In Kurzzeitinkubationen mit ausreichender Verfügbarkeit von Substrat wurden die Populationsgröße der methanogenen Organismen und die Kohlenstoffdichte als Hauptprädiktoren für die potenzielle Methanproduktion beim Auftauen von Permafrost identifiziert. ii) Auch die paläoökologischen Bedingungen beeinflussen die Reaktion der methanogenen Gemeinschaft und Aktivität, wenn Permafrost taut. Es wurden erhebliche Verschiebungen innerhalb der Gemeinschaftsstruktur und ein Rückgang der Diversität in Ablagerungen beobachtet, die in wärmeren Perioden gebildet wurden, jedoch nicht bei Ablagerungen aus kälteren und trockeneren Perioden. Insgesamt wurde in allen Proben eine Verschiebung hin zu einer Dominanz von hydrogenotrophen Methanogenen beobachtet, mit Ausnahme der ältesten interglazialen Ablagerungen aus dem Eem, die eine potenzielle Dominanz von acetoklastischen Methanogenen aufwiesen. Das Eem, das als Analogon zu den aktuellen Klimabedingungen diskutiert wird, enthielt hochaktive methanogene Gemeinschaften. iii) Anreicherungen aus Boden der saisonalen Auftauschicht zeigten, dass die enthaltene Plasmid-DNA („Metaplasmidom“) Stress-Reaktions-Gene trägt. Insbesondere codierte die Plasmid-DNA Antibiotikaresistenzgene, Schwermetallresistenzgene, Kälteschock-proteine und Gene, für den UV-Schutz, also Funktionen, die direkt an der Anpassung mikrobieller Gemeinschaften an Stress in polaren Umgebungen beteiligt sind. Weiterhin stammten die Metaplasmidome der saisonalen Auftauschicht Sibiriens hauptsächlich von Gammaproteobakterien. Durch die Anreicherung von Kulturen, gefolgt von einer Extraktion der Plasmid-DNA, war es möglich, eine höhere durchschnittliche Contig-Länge und eine signifikant höhere Wiederherstellung von Plasmidsequenzen zu erhalten als durch Extrahieren von Plasmidsequenzen aus Metagenomen. Der in dieser Arbeit etablierte Ansatz zur Analyse von „Metaplasmidomen“ ist ein geeigneter Ansatz zur Untersuchung der ökologischen Rolle von Plasmiden in polaren Regionen insgesamt. Diese Dissertation hebt hervor, wie wichtig es ist, die Abundanz, Zusammensetzung und Funktionen der mikrobiellen Gemeinschaft in Permafrost-Kohlenstoff-Projektionen einzubeziehen, und zwar nicht nur, da die mikrobiell vermittelte Methanfreisetzung aus Permafrostablagerungen das Potenzial hat, den zukünftigen Klimawandel erheblich zu beeinflussen. Vielmehr wurden in dieser Arbeit Abhängigkeiten methanogener Gemeinschaftsstrukturen, Abundanz und Aktivität identifiziert. Abschließend verdeutlicht diese Arbeit, wie wichtig es ist zu untersuchen, wie sich die derzeitige Erwärmung der Arktis auf mikrobielle Gemeinschaften auswirkt, um Einblicke in mikrobielle Reaktions- und Anpassungsstrategien zu erhalten. KW - methanogenic archaea KW - methane KW - glacial and interglacial permafrost KW - Permafrost carbon feedback KW - carbon density KW - Siberia KW - Herschel Island Qikiqtaruk KW - active layer KW - plasmidome KW - stress-tolerance genes Y1 - 2020 ER - TY - JOUR A1 - Huang, Sichao A1 - Stoof-Leichsenring, Kathleen R. A1 - Liu, Sisi A1 - Courtin, Jeremy A1 - Andreev, Andrej A. A1 - Pestryakova, Luidmila. A. A1 - Herzschuh, Ulrike T1 - Plant sedimentary ancient DNA from Far East Russia covering the last 28,000 years reveals different assembly rules in cold and warm climates JF - Frontiers in Ecology and Evolution N2 - Woody plants are expanding into the Arctic in response to the warming climate. The impact on arctic plant communities is not well understood due to the limited knowledge about plant assembly rules. Records of past plant diversity over long time series are rare. Here, we applied sedimentary ancient DNA metabarcoding targeting the P6 loop of the chloroplast trnL gene to a sediment record from Lake Ilirney (central Chukotka, Far Eastern Russia) covering the last 28 thousand years. Our results show that forb-rich steppe-tundra and dwarf-shrub tundra dominated during the cold climate before 14 ka, while deciduous erect-shrub tundra was abundant during the warm period since 14 ka. Larix invasion during the late Holocene substantially lagged behind the likely warmest period between 10 and 6 ka, where the vegetation biomass could be highest. We reveal highest richness during 28-23 ka and a second richness peak during 13-9 ka, with both periods being accompanied by low relative abundance of shrubs. During the cold period before 14 ka, rich plant assemblages were phylogenetically clustered, suggesting low genetic divergence in the assemblages despite the great number of species. This probably originates from environmental filtering along with niche differentiation due to limited resources under harsh environmental conditions. In contrast, during the warmer period after 14 ka, rich plant assemblages were phylogenetically overdispersed. This results from a high number of species which were found to harbor high genetic divergence, likely originating from an erratic recruitment process in the course of warming. Some of our evidence may be of relevance for inferring future arctic plant assembly rules and diversity changes. By analogy to the past, we expect a lagged response of tree invasion. Plant richness might overshoot in the short term; in the long-term, however, the ongoing expansion of deciduous shrubs will eventually result in a phylogenetically more diverse community. KW - sedimentary ancient DNA (sedaDNA) KW - metabarcoding KW - phylogenetic and taxonomic plant diversity KW - Arctic Russia KW - Siberia KW - holocene KW - glacial KW - treeline Y1 - 2021 U6 - https://doi.org/10.3389/fevo.2021.763747 SN - 2296-701X VL - 9 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Li, Wenjia A1 - Tian, Fang A1 - Rudaya, Natalya A. A1 - Herzschuh, Ulrike A1 - Cao, Xianyong T1 - Pollen-based holocene thawing-history of permafrost in Northern Asia and its potential impacts on climate change JF - Frontiers in Ecology and Evolution N2 - As the recent permafrost thawing of northern Asia proceeds due to anthropogenic climate change, precise and detailed palaeoecological records from past warm periods are essential to anticipate the extent of future permafrost variations. Here, based on the modern relationship between permafrost and vegetation (represented by pollen assemblages), we trained a Random Forest model using pollen and permafrost data and verified its reliability to reconstruct the history of permafrost in northern Asia during the Holocene. An early Holocene (12-8 cal ka BP) strong thawing trend, a middle-to-late Holocene (8-2 cal ka BP) relatively slow thawing trend, and a late Holocene freezing trend of permafrost in northern Asia are consistent with climatic proxies such as summer solar radiation and Northern Hemisphere temperature. The extensive distribution of permafrost in northern Asia inhibited the spread of evergreen coniferous trees during the early Holocene warming and might have decelerated the enhancement of the East Asian summer monsoon (EASM) by altering hydrological processes and albedo. Based on these findings, we suggest that studies of the EASM should consider more the state of permafrost and vegetation in northern Asia, which are often overlooked and may have a profound impact on climate change in this region. KW - pollen KW - Random Forest KW - Siberia KW - East Asian summer monsoon KW - permafrost Y1 - 2022 U6 - https://doi.org/10.3389/fevo.2022.894471 SN - 2296-701X VL - 10 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Liu, Sisi A1 - Stoof-Leichsenring, Kathleen Rosemarie A1 - Kruse, Stefan A1 - Pestryakova, Luidmila Agafyevna A1 - Herzschuh, Ulrike T1 - Holocene vegetation and plant diversity changes in the north-eastern Siberian treeline region from pollen and sedimentary ancient DNA JF - Frontiers in Ecology and Evolution N2 - Although sedimentary ancient DNA (sedaDNA) has been increasingly used to study paleoecological dynamics (Schulte et al., 2020), the approach has rarely been compared with the traditional method of pollen analysis for investigating past changes in the vegetation composition and diversity of Arctic treeline areas. Here, we provide a history of latitudinal floristic composition and species diversity based on a comparison ofsedaDNA and pollen data archived in three Siberian lake sediment cores spanning the mid-Holocene to the present (7.6-0 cal ka BP), from northern typical tundra to southern open larch forest in the Omoloy region. Our results show that thesedaDNA approach identifies more plant taxa found in the local vegetation communities, while the corresponding pollen analysis mainly captures the regional vegetation development and has its limitations for plant diversity reconstruction. Measures of alpha diversity were calculated based onsedaDNA data recovered from along a tundra to forest tundra to open larch forest gradient. Across all sites,sedaDNA archives provide a complementary record of the vegetation transition within each lake's catchment, tracking a distinct latitudinal vegetation type range from larch tree/alder shrub (open larch forest site) to dwarf shrub-steppe (forest tundra) to wet sedge tundra (typical tundra site). By contrast, the pollen data reveal an open landscape, which cannot distinguish the temporal changes in compositional vegetation for the open larch forest site and forest-tundra site. IncreasingLarixpollen percentages were recorded in the forest-tundra site in the last millenium although noLarixDNA was detected, suggesting that thesedaDNA approach performs better for tracking the local establishment ofLarix. Highest species richness and diversity are found in the mid-Holocene (before 4.4 ka) at the typical tundra site with a diverse range of vegetational habitats, while lowest species richness is recorded for the forest tundra where dwarf-willow habitats dominated the lake's catchment. During the late Holocene, strong declines in species richness and diversity are found at the typical tundra site with the vegetation changing to relatively simple communities. Nevertheless, plant species richness is mostly higher than at the forest-tundra site, which shows a slightly decreasing trend. Plant species richness at the open larch forest site fluctuates through time and is higher than the other sites since around 2.5 ka. Taken together, there is no evidence to suggest that the latitudinal gradients in species diversity changes are present at a millennial scale. Additionally, a weak correlation between the principal component analysis (PCA) site scores ofsedaDNA and species richness suggests that climate may not be a direct driver of species turnover within a lake's catchment. Our data suggest thatsedaDNA and pollen have different but complementary abilities for reconstructing past vegetation and species diversity along a latitude. KW - sedimentary ancient DNA KW - metabarcoding KW - pollen KW - Siberia KW - palaeovegetation KW - plant diversity KW - latitudinal gradient Y1 - 2020 U6 - https://doi.org/10.3389/fevo.2020.560243 SN - 2296-701X VL - 8 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Niemeyer, Bastian A1 - Epp, Laura Saskia A1 - Stoof-Leichsenring, Kathleen Rosemarie A1 - Pestryakova, Luidmila Agafyevna A1 - Herzschuh, Ulrike T1 - A comparison of sedimentary DNA and pollen from lake sediments in recording vegetation composition at the Siberian treeline JF - Molecular ecology resources N2 - Reliable information on past and present vegetation is important to project future changes, especially for rapidly transitioning areas such as the boreal treeline. To study past vegetation, pollen analysis is common, while current vegetation is usually assessed by field surveys. Application of detailed sedimentary DNA (sedDNA) records has the potential to enhance our understanding of vegetation changes, but studies systematically investigating the power of this proxy are rare to date. This study compares sedDNA metabarcoding and pollen records from surface sediments of 31 lakes along a north-south gradient of increasing forest cover in northern Siberia (Taymyr peninsula) with data from field surveys in the surroundings of the lakes. sedDNA metabarcoding recorded 114 plant taxa, about half of them to species level, while pollen analyses identified 43 taxa, both exceeding the 31 taxa found by vegetation field surveys. Increasing Larix percentages from north to south were consistently recorded by all three methods and principal component analyses based on percentage data of vegetation surveys and DNA sequences separated tundra from forested sites. Comparisons of the ordinations using procrustes and protest analyses show a significant fit among all compared pairs of records. Despite similarities of sedDNA and pollen records, certain idiosyncrasies, such as high percentages of Alnus and Betula in all pollen and high percentages of Salix in all sedDNA spectra, are observable. Our results from the tundra to single-tree tundra transition zone show that sedDNA analyses perform better than pollen in recording site-specific richness (i.e., presence/absence of taxa in the vicinity of the lake) and perform as well as pollen in tracing vegetation composition. KW - environmental DNA KW - metabarcoding KW - pollen KW - Siberia KW - trnL marker KW - vegetation Y1 - 2017 U6 - https://doi.org/10.1111/1755-0998.12689 SN - 1755-098X SN - 1755-0998 VL - 17 SP - e46 EP - e62 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Niemeyer, Bastian A1 - Herzschuh, Ulrike A1 - Pestryakova, Luidmila Agafyevna T1 - Vegetation and lake changes on the southern Taymyr peninsula, northern Siberia, during the last 300 years inferred from pollen and Pediastrum green algae records JF - The Holocene : an interdisciplinary journal focusing on recent environmental change N2 - Siberian arctic vegetation and lake water communities, known for their temperature dependence, are expected to be particularly impacted by recent climate change and high warming rates. However, decadal information on the nature and strength of recent vegetation change and its time lag to climate signals are rare. In this study, we present a Pb-210/Cs-137 dated pollen and Pediastrum species record from a unnamed lake in the south of the Taymyr peninsula covering the period from AD 1706 to 2011. Thirty-nine palynomorphs and 10 morphotypes of Pediastrum species were studied to assess changes in vegetation and lake conditions as probable responses to climate change. We compared the pollen record with Pediastrum species, which we consider to be important proxies of climate changes. Three pollen assemblage zones characterised by Betula nana, Alnus viridis and Larix gmelinii (1706-1808); herbs such as Cyperaceae, Artemisia or Senecio (1808-1879), and higher abundance of Larix pollen (1955-2011) are visible. Also, three Pediastrum assemblage zones show changes of aquatic conditions: higher abundances of Pediastrum boryanum var. brevicorne (1706-1802); medium abundances of P. kawraiskyi and P. integrum (1802-1840 and 1920-1980), indicating cooler conditions while less eutrophic conditions are indicated by P. boryanum, and a mainly balanced composition with only small changes of cold- and warm-adapted Pediastrum species (1965-2011). In general, compositional Pediastrum species turnover is slightly higher than that indicated by pollen data (0.54 vs 0.34 SD), but both are only minor for this treeline location. In conclusion, the relevance of differentiation of Pediastrum species is promising and can give further insights into the relationship between lakes and their surrounding vegetation transferred onto climatic conditions. KW - morphotypes KW - Pediastrum KW - pollen KW - Siberia KW - treeline KW - vegetation Y1 - 2015 U6 - https://doi.org/10.1177/0959683614565954 SN - 0959-6836 SN - 1477-0911 VL - 25 IS - 4 SP - 596 EP - 606 PB - Sage Publ. CY - London ER -