TY - JOUR A1 - Ribar, Anita A1 - Huber, Stefan E. A1 - Smialek, Malgorzata A. A1 - Tanzer, Katrin A1 - Neustetter, Michael A1 - Schürmann, Robin A1 - Bald, Ilko A1 - Denifl, Stephan T1 - Hydroperoxyl radical and formic acid formation from common DNA stabilizers upon low energy electron attachment JF - Physical chemistry, chemical physics : a journal of European Chemical Societies N2 - 2-Amino-2-(hydroxymethyl)-1,3-propanediol (TRIS) and ethylenediaminetetraacetic acid ( EDTA) are key components of biological buffers and are frequently used as DNA stabilizers in irradiation studies. Such surface or liquid phase studies are done with the aim to understand the fundamental mechanisms of DNA radiation damage and to improve cancer radiotherapy. When ionizing radiation is used, abundant secondary electrons are formed during the irradiation process, which are able to attach to the molecular compounds present on the surface. In the present study we experimentally investigate low energy electron attachment to TRIS and methyliminodiacetic acid ( MIDA), an analogue of EDTA, supported by quantum chemical calculations. The most prominent dissociation channel for TRIS is through hydroperoxyl radical formation, whereas the dissociation of MIDA results in the formation of formic and acetic acid. These compounds are well-known to cause DNA modifications, like strand breaks. The present results indicate that buffer compounds may not have an exclusive protecting effect on DNA as suggested previously. Y1 - 2018 U6 - https://doi.org/10.1039/c7cp07697e SN - 1463-9076 SN - 1463-9084 VL - 20 IS - 8 SP - 5578 EP - 5585 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - da Silva, Filipe Ferreira A1 - Varella, Marcio T. do N. A1 - Jones, Nykola C. A1 - Hoffmann, Soren Vronning A1 - Denifl, Stephan A1 - Bald, Ilko A1 - Kopyra, Janina T1 - Electron-Induced Reactions in 3-Bromopyruvic Acid JF - Chemistry - a European journal N2 - 3-Bromopyruvic acid (3BP) is a potential anticancer drug, the action of which on cellular metabolism is not yet entirely clear. The presence of a bromine atom suggests that it is also reactive towards low-energy electrons, which are produced in large quantities during tumour radiation therapy. Detailed knowledge of the interaction of 3BP with secondary electrons is a prerequisite to gain a complete picture of the effects of 3BP in different forms of cancer therapy. Herein, dissociative electron attachment (DEA) to 3BP in the gas phase has been studied both experimentally by using a crossed-beam setup and theoretically through scattering and quantum chemical calculations. These results are complemented by a vacuum ultraviolet absorption spectrum. The main fragmentation channel is the formation of Br- close to 0 eV and within several resonant features at 1.9 and 3-8 eV. At low electron energies, Br- formation proceeds through sigma* and pi* shape resonances, and at higher energies through core-excited resonances. It is found that the electron-capture cross-section is clearly increased compared with that of non-brominated pyruvic acid, but, at the same time, fragmentation reactions through DEA are significantly altered as well. The 3BP transient negative ion is subject to a lower number of fragmentation reactions than those of pyruvic acid, which indicates that 3BP could indeed act by modifying the electron-transport chains within oxidative phosphorylation. It could also act as a radio-sensitiser. KW - density functional calculations KW - dissociative electron attachment KW - drug discovery KW - gas-phase reactions KW - sensitizers Y1 - 2019 U6 - https://doi.org/10.1002/chem.201806132 SN - 0947-6539 SN - 1521-3765 VL - 25 IS - 21 SP - 5498 EP - 5506 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Schuermann, Robin A1 - Tanzer, Katrin A1 - Dabkowska, Iwona A1 - Denifl, Stephan A1 - Bald, Ilko T1 - Stability of the Parent Anion of the Potential Radiosensitizer 8-Bromoadenine Formed by Low-Energy (< 3 eV) Electron Attachment JF - The journal of physical chemistry : B, Condensed matter, materials, surfaces, interfaces & biophysical chemistry N2 - 8-Bromoadenine ((8Br)A) is a potential DNA radiosensitizer for cancer radiation therapy due to its efficient interaction with low-energy electrons (LEEs). LEEs are a short-living species generated during the radiation damage of DNA by high-energy radiation as it is applied in cancer radiation therapy. Electron attachment to (8Br)A in the gas phase results in a stable parent anion below 3 eV electron energy in addition to fragmentation products formed by resonant exocyclic bond cleavages. Density functional theory (DFT) calculations of the (8Br)A(-) anion reveal an exotic bond between the bromine and the C8 atom with a bond length of 2.6 angstrom, where the majority of the charge is located on bromine and the spin is mainly located on the C8 atom. The detailed understanding of such long-lived anionic states of nucleobase analogues supports the rational development of new therapeutic agents, in which the enhancement of dissociative electron transfer to the DNA backbone is critical to induce DNA strand breaks in cancerous tissue. Y1 - 2017 U6 - https://doi.org/10.1021/acs.jpcb.7b02130 SN - 1520-6106 VL - 121 SP - 5730 EP - 5734 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Schürmann, Robin Mathis A1 - Tsering, Thupten A1 - Tanzer, Katrin A1 - Denifl, Stephan A1 - Kumar, S. V. K. A1 - Bald, Ilko T1 - Resonant Formation of Strand Breaks in Sensitized Oligonucleotides Induced by Low-Energy Electrons (0.5-9 eV) JF - Angewandte Chemie : a journal of the Gesellschaft Deutscher Chemiker ; International edition N2 - Halogenated nucleobases are used as radiosensitizers in cancer radiation therapy, enhancing the reactivity of DNA to secondary low-energy electrons (LEEs). LEEs induce DNA strand breaks at specific energies (resonances) by dissociative electron attachment (DEA). Although halogenated nucleobases show intense DEA resonances at various electron energies in the gas phase, it is inherently difficult to investigate the influence of halogenated nucleobases on the actual DNA strand breakage over the broad range of electron energies at which DEA can take place (<12 eV). By using DNA origami nanostructures, we determined the energy dependence of the strand break cross-section for oligonucleotides modified with 8-bromoadenine ((8Br)A). These results were evaluated against DEA measurements with isolated (8Br)A in the gas phase. Contrary to expectations, the major contribution to strand breaks is from resonances at around 7 eV while resonances at very low energy (<2 eV) have little influence on strand breaks. KW - cancer radiation therapy KW - dissociative electron attachment KW - DNA origami KW - DNA radiation damage KW - radiosensitizers Y1 - 2017 U6 - https://doi.org/10.1002/anie.201705504 SN - 1433-7851 SN - 1521-3773 VL - 56 SP - 10952 EP - 10955 PB - Wiley-VCH CY - Weinheim ER -