TY - JOUR A1 - Numberger, Daniela A1 - Riedel, Thomas A1 - McEwen, Gayle A1 - Nübel, Ulrich A1 - Frentrup, Martinique A1 - Schober, Isabel A1 - Bunk, Boyke A1 - Spröer, Cathrin A1 - Overmann, Jörg A1 - Grossart, Hans-Peter A1 - Greenwood, Alex D. T1 - Genomic analysis of three Clostridioides difficile isolates from urban water sources JF - Anaerobe N2 - We investigated inflow of a wastewater treatment plant and sediment of an urban lake for the presence of Clostridioides difficile by cultivation and PCR. Among seven colonies we sequenced the complete genomes of three: two non-toxigenic isolates from wastewater and one toxigenic isolate from the urban lake. For all obtained isolates, a close genomic relationship with human-derived isolates was observed. (C) 2019 Elsevier Ltd. All rights reserved. KW - Clostridioides difficile KW - Genomes KW - Sediment KW - Wastewater Y1 - 2019 U6 - https://doi.org/10.1016/j.anaerobe.2019.01.002 SN - 1075-9964 SN - 1095-8274 VL - 56 SP - 22 EP - 26 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Frindte, Katharina A1 - Eckert, Werner A1 - Attermeyer, Katrin A1 - Grossart, Hans-Peter T1 - Internal wave-induced redox shifts affect biogeochemistry and microbial activity in sediments - a simulation experiment JF - Biogeochemistry N2 - Internal waves (seiches) are well-studied physical processes in stratified lakes, but their effects on sediment porewater chemistry and microbiology are still largely unexplored. Due to pycnocline oscillations, sediments are exposed to recurrent changes between epilimnetic and hypolimnetic water. This results in strong differences of environmental conditions, which should be reflected in the responses of redox-sensitive biogeochemical processes at both, the sediment-water interface and deeper sediment layers. We tested in a series of mesocosm experiments the influence of seiche-induced redox changes on porewater chemistry and bacterial activity in the sediments under well controlled conditions. Thereby, we excluded effects of changes in current and temperature regimes. For a period of 10 days, intact sediment cores from oligotrophic Lake Stechlin were incubated under constant (either oxic or anoxic) or alternating redox conditions. Solute concentrations were measured as porewater profiles in the sediment, while microbial activity was determined in the upper 0.5 cm of sediment. Oxic and alternating redox conditions resulted in similar ammonium, phosphate, and methane porewater concentrations, while concentrations of each analyte were considerably higher in anoxic cores. Microbial activity was clearly lower in the anoxic cores than in the oxic and the alternating cores. In conclusion, cores with intermittent anoxic phases of up to 24 hours do not differ in biogeochemistry and microbial activities from static oxic sediments. However, due to various physical processes seiches cause oxygen to penetrate deeper into sediment layers, which affects sediment redox gradients and increase microbial activity in seiche-influenced sediments. KW - Internal waves KW - Sediment KW - Sediment-water interface KW - Core incubation experiments KW - Porewater profiles KW - Redox conditions KW - Microbial activities Y1 - 2013 U6 - https://doi.org/10.1007/s10533-012-9769-1 SN - 0168-2563 VL - 113 IS - 1-3 SP - 423 EP - 434 PB - Springer CY - Dordrecht ER - TY - THES A1 - Francke, Till T1 - Measurement and modelling of water and sediment fluxes in meso-scale dryland catchments T1 - Messung und Modellierung von Wasser- und Sedimentflüssen in mesoskaligen Trockeneinzugsgebieten N2 - Water shortage is a serious threat for many societies worldwide. In drylands, water management measures like the construction of reservoirs are affected by eroded sediments transported in the rivers. Thus, the capability of assessing water and sediment fluxes at the river basin scale is of vital importance to support management decisions and policy making. This subject was addressed by the DFG-funded SESAM-project (Sediment Export from large Semi-Arid catchments: Measurements and Modelling). As a part of this project, this thesis focuses on (1) the development and implementation of an erosion module for a meso-scale catchment model, (2) the development of upscaling and generalization methods for the parameterization of such model, (3) the execution of measurements to obtain data required for the modelling and (4) the application of the model to different study areas and its evaluation. The research was carried out in two meso-scale dryland catchments in NE-Spain: Ribera Salada (200 km²) and Isábena (450 km²). Adressing objective 1, WASA-SED, a spatially semi-distributed model for water and sediment transport at the meso-scale was developed. The model simulates runoff and erosion processes at the hillslope scale, transport processes of suspended and bedload fluxes in the river reaches, and retention and remobilisation processes of sediments in reservoirs. This thesis introduces the model concept, presents current model applications and discusses its capabilities and limitations. Modelling at larger scales faces the dilemma of describing relevant processes while maintaining a manageable demand for input data and computation time. WASA-SED addresses this challenge by employing an innovative catena-based upscaling approach: the landscape is represented by characteristic toposequences. For deriving these toposequences with regard to multiple attributes (eg. topography, soils, vegetation) the LUMP-algorithm (Landscape Unit Mapping Program) was developed and related to objective 2. It incorporates an algorithm to retrieve representative catenas and their attributes, based on a Digital Elevation Model and supplemental spatial data. These catenas are classified to provide the discretization for the WASA-SED model. For objective 3, water and sediment fluxes were monitored at the catchment outlet of the Isábena and some of its sub-catchments. For sediment yield estimation, the intermittent measurements of suspended sediment concentration (SSC) had to be interpolated. This thesis presents a comparison of traditional sediment rating curves (SRCs), generalized linear models (GLMs) and non-parametric regression using Random Forests (RF) and Quantile Regression Forests (QRF). The observed SSCs are highly variable and range over six orders of magnitude. For these data, traditional SRCs performed poorly, as did GLMs, despite including other relevant process variables (e.g. rainfall intensities, discharge characteristics). RF and QRF proved to be very robust and performed favourably for reproducing sediment dynamics. QRF additionally excels in providing estimates on the accuracy of the predictions. Subsequent analysis showed that most of the sediment was exported during intense storms of late summer. Later floods yielded successively less sediment. Comparing sediment generation to yield at the outlet suggested considerable storage effects within the river channel. Addressing objective 4, the WASA-SED model was parameterized for the two study areas in NE Spain and applied with different foci. For Ribera Salada, the uncalibrated model yielded reasonable results for runoff and sediment. It provided quantitative measures of the change in runoff and sediment yield for different land-uses. Additional land management scenarios were presented and compared to impacts caused by climate change projections. In contrast, the application for the Isábena focussed on exploring the full potential of the model's predictive capabilities. The calibrated model achieved an acceptable performance for the validation period in terms of water and sediment fluxes. The inadequate representation of the lower sub-catchments inflicted considerable reductions on model performance, while results for the headwater catchments showed good agreement despite stark contrasts in sediment yield. In summary, the application of WASA-SED to three catchments proved the model framework to be a practicable multi-scale approach. It successfully links the hillslope to the catchment scale and integrates the three components hillslope, river and reservoir in one model. Thus, it provides a feasible approach for tackling issues of water and sediment yield at the meso-scale. The crucial role of processes like transmission losses and sediment storage in the river has been identified. Further advances can be expected when the representation of connectivity of water and sediment fluxes (intra-hillslope, hillslope-river, intra-river) is refined and input data improves. N2 - In vielen Regionen der Erde stellt Wassermangel ein Problem für die menschliche Gesellschaft dar. Insbesondere in Trockengebieten werden jedoch Maßnahmen des Wassermanagements, wie die Wasserspeicherung in Stauseen, durch die im Fluss transportierten Sedimentfrachten negativ beeinflusst. Somit stellen eine adäquate Beurteilung von Wasser- und Sedimentflüssen eine wichtige Voraussetzung für Entscheidungen in Wassermanagement und -planung dar. Dieser Problematik widmete sich das SESAM-Projekt (Sediment Export from large Semi-Arid catchments: Measurements and Modelling). Im Rahmen dieses Projektes befasste sich diese Dissertation mit (1) der Entwicklung und Umsetzung eines Erosions-Moduls für ein Einzugsgebietsmodell auf der Meso-Skala, (2) der Entwicklung von Skalierungs- und Generalisierungsmethoden für die Parametrisierung eines solchen Modells, (3) der Durchführung von Messungen, um die notwendigen Daten für das Modell zu gewinnen und (4) die Anwendung des Modells für verschiedene Einzugsgebiete und seiner Bewertung. Die Studie umfasste zwei mesoskalige Trockeneinzugsgebiete in NO-Spanien: Ribera Salada (200 km²) und Isábena (450 km²). Im Hinblick auf Zielstellung 1 wurde WASA-SED, ein räumlich semi-distribuiertes Modell für Wasserflüsse und Sedimenttransport, entwickelt. Das Modell simuliert Abfluss- und Erosionsprozesse auf der Hangskala, den Transport von suspendierten und Geschiebesedimenten auf der Skala von Flussabschnitten sowie Rückhalt- und Remobilisierungsprozesse von Sedimenten in Stauseen. Die vorliegende Arbeit stellt das Modellkonzept und Modellanwendungen vor und beschreibt Fähigkeiten und Grenzen des Modells. Die Modellierung auf größeren Skalen beinhaltet das Dilemma, dass relevante Prozesse beschrieben werden müssen, gleichzeitig aber die Anforderungen an Eingabedaten und Rechenzeit realisierbar bleiben. In WASA-SED wird diesem durch die Anwendung eines innovativen Hangprofil-basierten Skalierungsansatzes Rechnung getragen, indem die Landschaft durch charakteristische Toposequenzen repräsentiert wird. Um derartige Toposequenzen hinsichtlich verschiedener Landschaftseigenschaften (z.B. Relief, Böden, Vegetation) abzuleiten, wurde in Bezug zur Zielstellung 2 der LUMP-Algorithmus (Landscape Unit Mapping Program) entwickelt. LUMP beinhaltet ein Verfahren zur Berechnung repräsentativer Hangprofile und ihrer Attribute aus einem digitalen Geländemodell und optionalen Zusatzdaten. Durch die Klassifikation dieser Hangprofile wird die Grundlage der räumlichen Diskretisierung des WASA-SED Modells bereitgestellt. Im Zusammenhang mit Zielstellung 3 wurden Abfluss und Sedimentkonzentration (SSC) am Auslass und in einigen Teileinzugsgebieten des Isábena-Einzugsgebietes gemessen. Um den Sedimentaustrag zu bestimmen, mussten die Einzelmessung der Sedimentkonzentration interpoliert werden. Diese Arbeit vergleicht die Eignung traditioneller Eichkurvenansätze (SRCs), Generalized Linear Models (GLMs) und der nichtparametrischen Regressionstechniken Random Forests (RF) und Quantile Regression Forests (QRF). Da die beobachteten SSC-Werte stark über sechs Größenordnungen variieren, erwiesen sich die traditionellen SRCs als unzureichend. Gleichfalls versagten GLMs trotz der Einbeziehung weiterer relevanter Prozessgrößen wie Niederschlagsintensitäten und Abflusscharakteristika. RF und QRF stellten sich hingegen als sehr robust und für die Rekonstruktion der Sedimentdynamik geeignet dar. QRF liefert darüber hinaus auch Informationen zur Genauigkeit dieser Schätzungen. Die darauf aufbauende Analyse ergab, dass der Großteil der Sedimentfracht während der Starkregenereignisse des Spätsommers transportiert wurde. Spätere Niederschlagsereignisse erzeugten deutlich geringeren Austrag. Durch den Vergleich von Sedimentfrachten im Oberlauf mit Austragsmengen am Gebietsauslass konnte die Bedeutung der Sedimentspeicherung im Flussbett identifiziert werden. Zielstellung 4 wurde bearbeitet, indem das WASA-SED-Modell für zwei Untersuchungsgebiete in NO-Spanien unter unterschiedlichen Gesichtspunkten angewendet wurde. Für das Ribera-Salada-Einzugsgebiet lieferte das unkalibrierte Modell plausible Ergebnisse hinsichtlich der Wasser- und Sedimentflüsse. Damit war es möglich, die potentiellen Änderungen dieser Größen durch verschiedene Landnutzungsszenarien zu quantifizieren. Diese wurden den prognostizierten Veränderungen, die durch Klimaänderungen hervorgerufen würden, gegenübergestellt. Im Gegensatz dazu konzentrierte sich die Anwendung im Isábena-Einzugsgebiet auf die Untersuchung der bestmöglichen Modellanpassung. Im Validierungszeitraum ergab sich eine befriedigende Modellgüte für Wasser- und Sedimentflüsse. Diese Gesamtgüte wurde maßgeblich durch die unzureichende Abbildung der Unterliegergebiete beeinflusst, wohingegen die Gebiete des Oberlaufs, trotz ihrer stark kontrastierenden Sedimentausträge, gut dargestellt wurden. Die Anwendung des WASA-SED-Modells auf drei verschiedene Untersuchungsgebiete bestätigt die generelle Eignung des Modellkonzepts als einen sinnvollen multiskaligen Ansatz, der in einem Modell effektiv die Hangskala mit der Einzugsgebietsskala sowie den Einfluss von Flüssen und Stauseen vereint. Er stellt somit eine mögliche Grundlage für die Bearbeitung von wasser- und sedimentbezogenen Fragestellungen auf der Meso-Skala dar. Die besondere Bedeutung der Prozesse der Sickerverluste und Sedimentspeicherung im Gerinne konnten herausgearbeitet werden. Mögliche Verbesserungen betreffen die Berücksichtigung der Konnektivität von Wasser- und Sedimentflüssen (auf dem Hang, zwischen Hang und Fluss, innerhalb des Flusses) und die Qualität der Eingangsdaten für das Modell. KW - Erosion KW - Sediment KW - Modellierung KW - Spanien KW - Brasilien KW - erosion KW - sediment KW - modelling KW - Spain KW - Brazil Y1 - 2009 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-31525 ER - TY - JOUR A1 - Lopez, Pilar A1 - López-Tarazón, José Andrés A1 - Casas-Ruiz, Joan P. A1 - Pompeo, Marcelo A1 - Ordonez, Jaime A1 - Munoz, Isabel T1 - Sediment size distribution and composition in a reservoir affected by severe water level fluctuations JF - The science of the total environment : an international journal for scientific research into the environment and its relationship with man N2 - The reservoir sediments are important sinks for organic carbon (OC), the OC burial being dependent on two opposite processes, deposition and mineralization. Hence factors such as severe water level fluctuations are expected to influence the rate of OC accumulation as they may affect both deposition and mineralization. The Barasona Reservoir has been historically threatened by siltation, whilst the use of water for irrigation involves a drastic decrease of the water level. In this context, we have studied the physical and chemical characteristics (grain size, major and minor elemental compositions, organic and inorganic carbon, and nitrogen) of the recent sediments of the Barasona Reservoir and the relationships among them in order to: a) elucidate the main processes governing OC accumulation, b) evaluate the rate of OC mineralization and c) approach the effect of drought on the sediment characteristics in this system. Our results indicated that Barasona sediments were dominated by fine silts (>60%) and clays (>20%), the mean particle size decreasing from tail to dam. Desiccation increased particle sorting and size distribution became bimodal, but no effect on average size was observed. Attending to the composition, Barasona sediments were very homogeneous with low concentrations of nitrogen (TN) and phosphorus (<12 g kg(-1) dw and <0.6 g kg(-1) dw, respectively) and high concentration of OC (approximate to 36 kg(-1) dw). TN was negatively related to dry weight Sediment mixing due to drastic changes in water level may have favoured the observed homogeneity of Barasona sediments affecting carbon, major ions and grain size. The high amount of OC deposited in Barasona sediment suggested that the adsorption of OC onto fine particles was more important than in boreal lakes. The rate of oxygen consumption by wet sediment ranged from 2.26 to 3.15 mg O-2 m(-2) day(-1), values close to those compiled for Mediterranean running waters. (C) 2015 Elsevier B.V. All rights reserved. KW - Sediment KW - Grain-size KW - Organic carbon KW - Respiration rate KW - Barasona reservoir KW - Drought Y1 - 2016 U6 - https://doi.org/10.1016/j.scitotenv.2015.06.033 SN - 0048-9697 SN - 1879-1026 VL - 540 SP - 158 EP - 167 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Wurzbacher, Christian A1 - Fuchs, Andrea A1 - Attermeyer, Katrin A1 - Frindte, Katharina A1 - Grossart, Hans-Peter A1 - Hupfer, Michael A1 - Casper, Peter A1 - Monaghan, Michael T. T1 - Shifts among Eukaryota, Bacteria, and Archaea define the vertical organization of a lake sediment JF - Microbiome N2 - Background: Lake sediments harbor diverse microbial communities that cycle carbon and nutrients while being constantly colonized and potentially buried by organic matter sinking from the water column. The interaction of activity and burial remained largely unexplored in aquatic sediments. We aimed to relate taxonomic composition to sediment biogeochemical parameters, test whether community turnover with depth resulted from taxonomic replacement or from richness effects, and to provide a basic model for the vertical community structure in sediments. Methods: We analyzed four replicate sediment cores taken from 30-m depth in oligo-mesotrophic Lake Stechlin in northern Germany. Each 30-cm core spanned ca. 170 years of sediment accumulation according to Cs-137 dating and was sectioned into layers 1-4 cm thick. We examined a full suite of biogeochemical parameters and used DNA metabarcoding to examine community composition of microbial Archaea, Bacteria, and Eukaryota. Results: Community beta-diversity indicated nearly complete turnover within the uppermost 30 cm. We observed a pronounced shift from Eukaryota- and Bacteria-dominated upper layers (<5 cm) to Bacteria-dominated intermediate layers (5-14 cm) and to deep layers (>14 cm) dominated by enigmatic Archaea that typically occur in deep-sea sediments. Taxonomic replacement was the prevalent mechanism in structuring the community composition and was linked to parameters indicative of microbial activity (e.g., CO2 and CH4 concentration, bacterial protein production). Richness loss played a lesser role but was linked to conservative parameters (e.g., C, N, P) indicative of past conditions. Conclusions: By including all three domains, we were able to directly link the exponential decay of eukaryotes with the active sediment microbial community. The dominance of Archaea in deeper layers confirms earlier findings from marine systems and establishes freshwater sediments as a potential low-energy environment, similar to deep sea sediments. We propose a general model of sediment structure and function based on microbial characteristics and burial processes. An upper "replacement horizon" is dominated by rapid taxonomic turnover with depth, high microbial activity, and biotic interactions. A lower "depauperate horizon" is characterized by low taxonomic richness, more stable "low-energy" conditions, and a dominance of enigmatic Archaea. KW - Archaea KW - Eukaryota KW - Bacteria KW - Community KW - Freshwater KW - Lake KW - DNA metabarcoding KW - Beta-diversity KW - Sediment KW - Turnover Y1 - 2017 U6 - https://doi.org/10.1186/s40168-017-0255-9 SN - 2049-2618 VL - 5 PB - BioMed Central CY - London ER -