TY - THES A1 - Kiss, Andrea T1 - Moss-associated bacterial and archaeal communities of northern peatlands: key taxa, environmental drivers and potential functions T1 - Moos-assoziierte bakterielle und archaelle Gemeinschaften nördlicher Moore: Schlüsselspezies, beeinflussende Umweltfaktoren und potentielle Funktionen N2 - Moss-microbe associations are often characterised by syntrophic interactions between the microorganisms and their hosts, but the structure of the microbial consortia and their role in peatland development remain unknown. In order to study microbial communities of dominant peatland mosses, Sphagnum and brown mosses, and the respective environmental drivers, four study sites representing different successional stages of natural northern peatlands were chosen on a large geographical scale: two brown moss-dominated, circumneutral peatlands from the Arctic and two Sphagnum-dominated, acidic peat bogs from subarctic and temperate zones. The family Acetobacteraceae represented the dominant bacterial taxon of Sphagnum mosses from various geographical origins and displayed an integral part of the moss core community. This core community was shared among all investigated bryophytes and consisted of few but highly abundant prokaryotes, of which many appear as endophytes of Sphagnum mosses. Moreover, brown mosses and Sphagnum mosses represent habitats for archaea which were not studied in association with peatland mosses so far. Euryarchaeota that are capable of methane production (methanogens) displayed the majority of the moss-associated archaeal communities. Moss-associated methanogenesis was detected for the first time, but it was mostly negligible under laboratory conditions. Contrarily, substantial moss-associated methane oxidation was measured on both, brown mosses and Sphagnum mosses, supporting that methanotrophic bacteria as part of the moss microbiome may contribute to the reduction of methane emissions from pristine and rewetted peatlands of the northern hemisphere. Among the investigated abiotic and biotic environmental parameters, the peatland type and the host moss taxon were identified to have a major impact on the structure of moss-associated bacterial communities, contrarily to archaeal communities whose structures were similar among the investigated bryophytes. For the first time it was shown that different bog development stages harbour distinct bacterial communities, while at the same time a small core community is shared among all investigated bryophytes independent of geography and peatland type. The present thesis displays the first large-scale, systematic assessment of bacterial and archaeal communities associated both with brown mosses and Sphagnum mosses. It suggests that some host-specific moss taxa have the potential to play a key role in host moss establishment and peatland development. N2 - Während die Beziehungen zwischen Moosen und den mit ihnen assoziierten Mikroorganismen oft durch syntrophische Wechselwirkungen charakterisiert sind, ist die Struktur der Moos-assoziierten mikrobiellen Gemeinschaften sowie deren Rolle bei der Entstehung von Mooren weitgehend unbekannt. Die vorliegende Arbeit befasst sich mit mikrobiellen Gemeinschaften, die mit Moosen nördlicher, naturnaher Moore assoziiert sind, sowie mit den Umweltfaktoren, die sie beeinflussen. Entlang eines groß angelegten geographischen Gradienten, der von der Hocharktis bis zur gemäßigten Klimazone reicht, wurden vier naturbelassene Moore als Probenstandorte ausgesucht, die stellvertretend für verschiedene Stadien der Moorentwicklung stehen: zwei Braunmoos-dominierte Niedermoore mit nahezu neutralem pH-Wert sowie zwei Sphagnum-dominierte Torfmoore mit saurem pH-Wert. Die Ergebnisse der vorliegenden Arbeit machen deutlich, dass die zu den Bakterien zählenden Acetobacteraceae das vorherrschende mikrobielle Taxon der Sphagnum-Moose gleich welchen geographischen Ursprungs darstellen und insbesondere innerhalb des Wirtsmoosgewebes dominieren. Gleichzeitig gehörten die Acetobacteraceae zum wesentlichen Bestandteil der mikrobiellen Kerngemeinschaft aller untersuchten Moose, die sich aus einigen wenigen Arten, dafür zahlreich vorkommenden Prokaryoten zusammensetzt. Die vorliegende Arbeit zeigt zudem erstmals, dass sowohl Braunmoose als auch Torfmoose ein Habitat für Archaeen darstellen. Die Mehrheit der Moos-assoziierten Archaeen gehörte dabei zu den methanbildenden Gruppen, wenngleich die metabolischen Aktivitätsraten unter Laborbedingungen meistens kaum messbar waren. Im Gegensatz hierzu konnte die Bakterien-vermittelte Methanoxidation sowohl an Braunmoosen als auch an Sphagnum-Moosen gemessen werden. Dies zeigt eindrucksvoll, dass Moos-assoziierte Bakterien potenziell zur Minderung von Methanemissionen aus nördlichen, aber auch wiedervernässten Mooren beitragen können. Ein weiteres wichtiges Resultat der vorliegenden Arbeit ist die Bedeutung des Moortyps (Niedermoor oder Torfmoor), aber auch der Wirtsmoosart selbst für die Struktur der Moos-assoziierten Bakteriengemeinschaften, während die archaeellen Gemeinschaftsstrukturen weder vom Moortyp noch von der Wirtsmoosart beeinflusst wurden und sich insgesamt deutlich ähnlicher waren als die der Bakterien. Darüber hinaus konnte erstmalig gezeigt werden, dass sich die bakteriellen Gemeinschaften innerhalb der unterschiedlichen Moorsukzessionsstadien zwar ganz erheblich voneinander unterscheiden, ein kleiner Teil der Bakterien dennoch Kerngemeinschaften bilden, die mit allen untersuchten Moosarten assoziiert waren. Bei der hier präsentierten Arbeit handelt es sich um die erste systematische Studie, die sich auf einer großen geographischen Skala mit den bakteriellen und archaeellen Gemeinschaften von Braunmoosen und Torfmoosen aus naturbelassenen nördlichen Mooren befasst. Die vorliegenden Ergebnisse machen deutlich, dass die untersuchten Moose ein ganz spezifisches mikrobielles Konsortium beherbergen, welches mutmaßlich eine Schlüsselrolle bei der Etablierung der Wirtspflanzen am Anfang der Moorentwicklung spielt und darüber hinaus das Potential hat, die charakteristischen Eigenschaften von Mooren sowie deren weitere Entwicklung zu prägen. KW - moss-microbe-interactions KW - moss-associated bacteria KW - moss-associated archaea KW - northern peatlands KW - peatland core microbiome KW - Acetobacteraceae KW - moss-associated methanotrophy KW - moss-associated methanogenesis KW - Sphagnum KW - Amblystegiaceae KW - endophytes KW - brown mosses KW - epiphytes KW - peatland development KW - bryophytes KW - host-specificity KW - large-scale study KW - methanotrophic bacteria KW - methanogenic archaea KW - Essigsäurebakterien KW - Amblystegiaceae KW - Torfmoose KW - Braunmoose KW - Bryophyten KW - Endophyten KW - Epiphyten KW - Wirtsspezifität KW - geographische Großstudie KW - methanproduzierende Archaeen KW - methanoxidierende Bakterien KW - Moos-assoziierte Methanproduktion KW - Moos-assoziierte Methanoxidation KW - Moos-Mikroben-Interaktion KW - nördliche Moore KW - mikrobielle Moor-Kerngemeinschaft KW - Moorsukzession Y1 - 2024 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-630641 ER - TY - JOUR A1 - Perkins, Anita A1 - Rose, Andrew A1 - Grossart, Hans-Peter A1 - Rojas-Jimenez, Keilor Osvaldo A1 - Barroso Prescott, Selva Kiri A1 - Oakes, Joanne M. T1 - Oxic and Anoxic Organic Polymer Degradation Potential of Endophytic Fungi From the Marine Macroalga, Ecklonia radiata JF - Frontiers in Microbiology N2 - Cellulose and chitin are the most abundant polymeric, organic carbon source globally. Thus, microbes degrading these polymers significantly influence global carbon cycling and greenhouse gas production. Fungi are recognized as important for cellulose decomposition in terrestrial environments, but are far less studied in marine environments, where bacterial organic matter degradation pathways tend to receive more attention. In this study, we investigated the potential of fungi to degrade kelp detritus, which is a major source of cellulose in marine systems. Given that kelp detritus can be transported considerable distances in the marine environment, we were specifically interested in the capability of endophytic fungi, which are transported with detritus, to ultimately contribute to kelp detritus degradation. We isolated 10 species and two strains of endophytic fungi from the kelp Ecklonia radiata. We then used a dye decolorization assay to assess their ability to degrade organic polymers (lignin, cellulose, and hemicellulose) under both oxic and anoxic conditions and compared their degradation ability with common terrestrial fungi. Under oxic conditions, there was evidence that Ascomycota isolates produced cellulose-degrading extracellular enzymes (associated with manganese peroxidase and sulfur-containing lignin peroxidase), while Mucoromycota isolates appeared to produce both lignin and cellulose-degrading extracellular enzymes, and all Basidiomycota isolates produced lignin-degrading enzymes (associated with laccase and lignin peroxidase). Under anoxic conditions, only three kelp endophytes degraded cellulose. We concluded that kelp fungal endophytes can contribute to cellulose degradation in both oxic and anoxic environments. Thus, endophytic kelp fungi may play a significant role in marine carbon cycling via polymeric organic matter degradation. KW - kelp KW - fungi KW - endophytes KW - carbon cycling KW - extracellular enzymes KW - cellulose polymeric organic matter Y1 - 2021 U6 - https://doi.org/10.3389/fmicb.2021.726138 SN - 1664-302X VL - 12 SP - 1 EP - 13 PB - Frontiers in microbiology CY - Lausanne, Schweiz ER - TY - GEN A1 - Perkins, Anita A1 - Rose, Andrew A1 - Grossart, Hans-Peter A1 - Rojas-Jimenez, Keilor Osvaldo A1 - Barroso Prescott, Selva Kiri A1 - Oakes, Joanne M. T1 - Oxic and Anoxic Organic Polymer Degradation Potential of Endophytic Fungi From the Marine Macroalga, Ecklonia radiata T2 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Cellulose and chitin are the most abundant polymeric, organic carbon source globally. Thus, microbes degrading these polymers significantly influence global carbon cycling and greenhouse gas production. Fungi are recognized as important for cellulose decomposition in terrestrial environments, but are far less studied in marine environments, where bacterial organic matter degradation pathways tend to receive more attention. In this study, we investigated the potential of fungi to degrade kelp detritus, which is a major source of cellulose in marine systems. Given that kelp detritus can be transported considerable distances in the marine environment, we were specifically interested in the capability of endophytic fungi, which are transported with detritus, to ultimately contribute to kelp detritus degradation. We isolated 10 species and two strains of endophytic fungi from the kelp Ecklonia radiata. We then used a dye decolorization assay to assess their ability to degrade organic polymers (lignin, cellulose, and hemicellulose) under both oxic and anoxic conditions and compared their degradation ability with common terrestrial fungi. Under oxic conditions, there was evidence that Ascomycota isolates produced cellulose-degrading extracellular enzymes (associated with manganese peroxidase and sulfur-containing lignin peroxidase), while Mucoromycota isolates appeared to produce both lignin and cellulose-degrading extracellular enzymes, and all Basidiomycota isolates produced lignin-degrading enzymes (associated with laccase and lignin peroxidase). Under anoxic conditions, only three kelp endophytes degraded cellulose. We concluded that kelp fungal endophytes can contribute to cellulose degradation in both oxic and anoxic environments. Thus, endophytic kelp fungi may play a significant role in marine carbon cycling via polymeric organic matter degradation. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1246 KW - kelp KW - fungi KW - endophytes KW - carbon cycling KW - extracellular enzymes KW - cellulose polymeric organic matter Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-550520 SN - 1866-8372 VL - 12 SP - 1 EP - 13 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Estendorfer, Jennifer A1 - Stempfhuber, Barbara A1 - Haury, Paula A1 - Vestergaard, Gisle A1 - Rillig, Matthias C. A1 - Joshi, Jasmin Radha A1 - Schröder, Peter A1 - Schloter, Michael T1 - The Influence of Land Use Intensity on the Plant-Associated Microbiome of Dactylis glomerata L. JF - Frontiers in plant science N2 - In this study, we investigated the impact of different land use intensities (LUI) on the root-associated microbiome of Dactylis glomerata (orchardgrass). For this purpose, eight sampling sites with different land use intensity levels but comparable soil properties were selected in the southwest of Germany. Experimental plots covered land use levels from natural grassland up to intensively managed meadows. We used 16S rRNA gene based barcoding to assess the plant-associated community structure in the endosphere, rhizosphere and bulk soil of D. glomerata. Samples were taken at the reproductive stage of the plant in early summer. Our data indicated that roots harbor a distinct bacterial community, which clearly differed from the microbiome of the rhizosphere and bulk soil. Our results revealed Pseudomonadaceae, Enterobacteriaceae and Comamonadaceae as the most abundant endophytes independently of land use intensity. Rhizosphere and bulk soil were dominated also by Proteobacteria, but the most abundant families differed from those obtained from root samples. In the soil, the effect of land use intensity was more pronounced compared to root endophytes leading to a clearly distinct pattern of bacterial communities under different LUI from rhizosphere and bulk soil vs. endophytes. Overall, a change of community structure on the plant-soil interface was observed, as the number of shared OTUs between all three compartments investigated increased with decreasing land use intensity. Thus, our findings suggest a stronger interaction of the plant with its surrounding soil under low land use intensity. Furthermore, the amount and quality of available nitrogen was identified as a major driver for shifts in the microbiome structure in all compartments. KW - Dactylis glomerata KW - land use change KW - endophytes KW - rhizosphere KW - soil microbiome KW - biodiversity Y1 - 2017 U6 - https://doi.org/10.3389/fpls.2017.00930 SN - 1664-462X VL - 8 PB - Frontiers Research Foundation CY - Lausanne ER -