TY - JOUR A1 - Mickelsson, Jouko A1 - Paycha, Sylvie T1 - The logarithmic residue density of a generalized Laplacian JF - Journal of the Australian Mathematical Society N2 - We show that the residue density of the logarithm of a generalized Laplacian on a closed manifold definesan invariant polynomial-valued differential form. We express it in terms of a finite sum of residues ofclassical pseudodifferential symbols. In the case of the square of a Dirac operator, these formulas providea pedestrian proof of the Atiyah–Singer formula for a pure Dirac operator in four dimensions and for atwisted Dirac operator on a flat space of any dimension. These correspond to special cases of a moregeneral formula by Scott and Zagier. In our approach, which is of perturbative nature, we use either aCampbell–Hausdorff formula derived by Okikiolu or a noncommutative Taylor-type formula. KW - residue KW - index KW - Dirac operators Y1 - 2011 U6 - https://doi.org/10.1017/S144678871100108X SN - 0263-6115 SN - 1446-8107 VL - 90 IS - 1 SP - 53 EP - 80 PB - Cambridge Univ. Press CY - Cambridge ER - TY - JOUR A1 - Cherstvy, Andrey G. A1 - Chechkin, Aleksei V. A1 - Metzler, Ralf T1 - Particle invasion, survival, and non-ergodicity in 2D diffusion processes with space-dependent diffusivity JF - Soft matter N2 - We study the thermal Markovian diffusion of tracer particles in a 2D medium with spatially varying diffusivity D(r), mimicking recently measured, heterogeneous maps of the apparent diffusion coefficient in biological cells. For this heterogeneous diffusion process (HDP) we analyse the mean squared displacement (MSD) of the tracer particles, the time averaged MSD, the spatial probability density function, and the first passage time dynamics from the cell boundary to the nucleus. Moreover we examine the non-ergodic properties of this process which are important for the correct physical interpretation of time averages of observables obtained from single particle tracking experiments. From extensive computer simulations of the 2D stochastic Langevin equation we present an in-depth study of this HDP. In particular, we find that the MSDs along the radial and azimuthal directions in a circular domain obey anomalous and Brownian scaling, respectively. We demonstrate that the time averaged MSD stays linear as a function of the lag time and the system thus reveals a weak ergodicity breaking. Our results will enable one to rationalise the diffusive motion of larger tracer particles such as viruses or submicron beads in biological cells. KW - anomalous diffusion KW - intracellular-transport KW - adenoassociated virus KW - infection pathway KW - escherichia-coli KW - endosomal escape KW - living cells KW - trafficking KW - cytoplasm KW - models Y1 - 2014 U6 - https://doi.org/10.1039/c3sm52846d SN - 2046-2069 VL - 2014 IS - 10 SP - 1591 EP - 1601 PB - Royal Society of Chemistry ER - TY - JOUR A1 - Mondal, Suvendu Sekhar A1 - Bhunia, Asamanjoy A1 - Kelling, Alexandra A1 - Schilde, Uwe A1 - Janiak, Christoph A1 - Holdt, Hans-Jürgen T1 - A supramolecular Co(II)₁₄-metal–organic cube in a hydrogen-bonded network and a Co(II)–organic framework with a flexible methoxy substituent JF - Chemical communications : ChemComm N2 - The reaction of 4,5-dicyano-2-methoxyimidazole (L1) with Co(NO3)2·6H2O under solvothermal conditions in DMF, a MOF, IFP-8 and a hydrogen-bonded network consisting of tetradecanuclear Co(II)14-metal organic cube (1) are achieved. 1 shows the bcu net with 14 cobalt atoms. KW - zinc Y1 - 2014 U6 - https://doi.org/10.1039/c3cc49698h SN - 2046-2069 VL - 2014 IS - 41 SP - 5441 EP - 5443 PB - Royal Society of Chemistry ER - TY - JOUR A1 - Eckert, Sebastian A1 - Norell, Jesper A1 - Miedema, Piter S. A1 - Beye, Martin A1 - Fondell, Mattis A1 - Quevedo, Wilson A1 - Kennedy, Brian A1 - Hantschmann, Markus A1 - Pietzsch, Annette A1 - van Kuiken, Benjamin A1 - Ross, Matthew A1 - Minitti, Michael P. A1 - Moeller, Stefan P. A1 - Schlotter, William F. A1 - Khalil, Munira A1 - Odelius, Michael A1 - Föhlisch, Alexander T1 - Untersuchung unabhängiger N‐H‐ und N‐C‐Bindungsverformungen auf ultrakurzen Zeitskalen mit resonanter inelastischer Röntgenstreuung JF - Angewandte Chemie N2 - Die Femtosekundendynamik nach resonanten Photoanregungen mit optischen und Röntgenpulsen ermöglicht eine selektive Verformung von chemischen N‐H‐ und N‐C‐Bindungen in 2‐Thiopyridon in wässriger Lösung. Die Untersuchung der orbitalspezifischen elektronischen Struktur und ihrer Dynamik auf ultrakurzen Zeitskalen mit resonanter inelastischer Röntgenstreuung an der N1s‐Resonanz am Synchrotron und dem Freie‐Elektronen‐Laser LCLS in Kombination mit quantenchemischen Multikonfigurationsberechnungen erbringen den direkten Nachweis dieser kontrollierten photoinduzierten Molekülverformungen und ihrer ultrakurzen Zeitskala. KW - Photochemie KW - Protonierung KW - RIXS (resonante inelastische Röntgenstreuung) KW - Selektiver Bindungsbruch KW - Stickstoff Y1 - 2017 U6 - https://doi.org/10.1002/ange.201700239 SN - 1521-3757 SN - 1521-3773 VL - 129 IS - 22 SP - 6184 EP - 6188 ER - TY - JOUR A1 - Jousset, Philippe A1 - Reinsch, Thomas A1 - Ryberg, Trond A1 - Blanck, Hanna A1 - Clarke, Andy A1 - Aghayev, Rufat A1 - Hersir, Gylfi P. A1 - Henninges, Jan A1 - Weber, Michael A1 - Krawczyk, Charlotte M. T1 - Dynamic strain determination using fibre-optic cables allows imaging of seismological and structural features JF - Nature Communications N2 - Natural hazard prediction and efficient crust exploration require dense seismic observations both in time and space. Seismological techniques provide ground-motion data, whose accuracy depends on sensor characteristics and spatial distribution. Here we demonstrate that dynamic strain determination is possible with conventional fibre-optic cables deployed for telecommunication. Extending recently distributed acoustic sensing (DAS) studies, we present high resolution spatially un-aliased broadband strain data. We recorded seismic signals from natural and man-made sources with 4-m spacing along a 15-km-long fibre-optic cable layout on Reykjanes Peninsula, SW-Iceland. We identify with unprecedented resolution structural features such as normal faults and volcanic dykes in the Reykjanes Oblique Rift, allowing us to infer new dynamic fault processes. Conventional seismometer recordings, acquired simultaneously, validate the spectral amplitude DAS response between 0.1 and 100 Hz bandwidth. We suggest that the networks of fibre-optic telecommunication lines worldwide could be used as seismometers opening a new window for Earth hazard assessment and exploration. Y1 - 2018 U6 - https://doi.org/10.1038/s41467-018-04860-y SN - 2041-1723 VL - 9 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Marelja, Zvonimir A1 - Leimkühler, Silke A1 - Missirlis, Fanis T1 - Iron sulfur and molybdenum cofactor enzymes regulate the drosophila life cycle by controlling cell metabolism JF - Frontiers in physiology N2 - Iron sulfur (Fe-S) clusters and the molybdenum cofactor (Moco) are present at enzyme sites, where the active metal facilitates electron transfer. Such enzyme systems are soluble in the mitochondrial matrix, cytosol and nucleus, or embedded in the inner mitochondrial membrane, but virtually absent from the cell secretory pathway. They are of ancient evolutionary origin supporting respiration, DNA replication, transcription, translation, the biosynthesis of steroids, heme, catabolism of purines, hydroxylation of xenobiotics, and cellular sulfur metabolism. Here, Fe-S cluster and Moco biosynthesis in Drosophila melanogaster is reviewed and the multiple biochemical and physiological functions of known Fe-S and Moco enzymes are described. We show that RNA interference of Mocs3 disrupts Moco biosynthesis and the circadian clock. Fe-S-dependent mitochondrial respiration is discussed in the context of germ line and somatic development, stem cell differentiation and aging. The subcellular compartmentalization of the Fe-S and Moco assembly machinery components and their connections to iron sensing mechanisms and intermediary metabolism are emphasized. A biochemically active Fe-S core complex of heterologously expressed fly Nfs1, Isd11, IscU, and human frataxin is presented. Based on the recent demonstration that copper displaces the Fe-S cluster of yeast and human ferredoxin, an explanation for why high dietary copper leads to cytoplasmic iron deficiency in flies is proposed. Another proposal that exosomes contribute to the transport of xanthine dehydrogenase from peripheral tissues to the eye pigment cells is put forward, where the Vps16a subunit of the HOPS complex may have a specialized role in concentrating this enzyme within pigment granules. Finally, we formulate a hypothesis that (i) mitochondrial superoxide mobilizes iron from the Fe-S clusters in aconitase and succinate dehydrogenase; (ii) increased iron transiently displaces manganese on superoxide dismutase, which may function as a mitochondrial iron sensor since it is inactivated by iron; (iii) with the Krebs cycle thus disrupted, citrate is exported to the cytosol for fatty acid synthesis, while succinyl-CoA and the iron are used for heme biosynthesis; (iv) as iron is used for heme biosynthesis its concentration in the matrix drops allowing for manganese to reactivate superoxide dismutase and Fe-S cluster biosynthesis to reestablish the Krebs cycle. KW - aldehyde oxidase KW - DNA polymerase KW - electron transport chain KW - ecdysone KW - iron regulatory protein KW - quiescent mitochondria KW - magnetoreceptor KW - mitoflashes Y1 - 2018 U6 - https://doi.org/10.3389/fphys.2018.00050 SN - 1664-042X VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Reindl, Nicole A1 - Finch, Nicolle L. A1 - Schaffenroth, Veronika A1 - Barstow, Martin A. A1 - Casewell, Sarah L. A1 - Geier, Stephan Alfred A1 - Bertolami Miller, Marcelo Miguel A1 - Taubenberger, Stefan T1 - Revealing the true nature of Hen 2-428 JF - Galaxies N2 - The nucleus of Hen 2-428 is a short orbital period (4.2 h) spectroscopic binary, whose status as potential supernovae type Ia progenitor has raised some controversy in the literature. We present preliminary results of a thorough analysis of this interesting system, which combines quantitative non-local thermodynamic (non-LTE) equilibrium spectral modelling, radial velocity analysis, multi-band light curve fitting, and state-of-the art stellar evolutionary calculations. Importantly, we find that the dynamical system mass that is derived by using all available He II lines does not exceed the Chandrasekhar mass limit. Furthermore, the individual masses of the two central stars are too small to lead to an SN Ia in case of a dynamical explosion during the merger process. KW - binaries: spectroscopic KW - stars: atmospheres KW - stars: abundances KW - supernovae Y1 - 2018 U6 - https://doi.org/10.3390/galaxies6030088 SN - 2075-4434 VL - 6 IS - 3 ER - TY - JOUR A1 - Schnitzler, Joseph G. A1 - Pinzone, Marianna A1 - Autenrieth, Marijke A1 - van Neer, Abbo A1 - IJsseldijk, Lonneke L. A1 - Barber, Jonathan L. A1 - Deaville, Rob A1 - Jepson, Paul A1 - Brownlow, Andrew A1 - Schaffeld, Tobias A1 - Thome, Jean-Pierre A1 - Tiedemann, Ralph A1 - Das, Krishna A1 - Siebert, Ursula T1 - Inter-individual differences in contamination profiles as tracer of social group association in stranded sperm whales JF - Scientific reports N2 - Ecological and physiological factors lead to different contamination patterns in individual marine mammals. The objective of the present study was to assess whether variations in contamination profiles are indicative of social structures of young male sperm whales as they might reflect a variation in feeding preferences and/or in utilized feeding grounds. We used a total of 61 variables associated with organic compounds and trace element concentrations measured in muscle, liver, kidney and blubber gained from 24 sperm whales that stranded in the North Sea in January and February 2016. Combining contaminant and genetic data, there is evidence for at least two cohorts with different origin among these stranded sperm whales; one from the Canary Island region and one from the northern part of the Atlantic. While genetic data unravel relatedness and kinship, contamination data integrate over areas, where animals occured during their lifetime. Especially in long-lived animals with a large migratory potential, as sperm whales, contamination data may carry highly relevant information about aggregation through time and space. Y1 - 2018 U6 - https://doi.org/10.1038/s41598-018-29186-z SN - 2045-2322 VL - 8 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Nagel, Rebecca A1 - Kirschbaum, Frank A1 - Engelmann, Jacob A1 - Hofmann, Volker A1 - Pawelzik, Felix A1 - Tiedemann, Ralph T1 - Male-mediated species recognition among African weakly electric fishes JF - Royal Society Open Science N2 - Effective communication among sympatric species is often instrumental for behavioural isolation, where the failure to successfully discriminate between potential mates could lead to less fit hybrid offspring. Discrimination between con- and heterospecifics tends to occur more often in the sex that invests more in offspring production, i.e. females, but males may also mediate reproductive isolation. In this study, we show that among two Campylomormyrus Africanweakly electric fish species, males preferentially associate with conspecific females during choice tests using live fish as stimuli, i.e. when all sensory modalities potentially used for communication were present. We then conducted playback experiments to determine whether the species-specific electric organ discharge (EOD) used for electrocommunication serves as the cue for this conspecific association preference. Interestingly, only C. compressirostris males associated significantly more with the conspecific EOD waveform when playback stimuli were provided, while no such association preference was observed in C. tamandua males. Given our results, the EOD appears to serve, in part, as a male-mediated pre-zygotic isolation mechanism among sympatric species. However, the failure of C. tamandua males to discriminate between con- and heterospecific playback discharges suggests that multiple modalities may be necessary for species recognition in some African weakly electric fish species. KW - Campylomormyrus KW - communication KW - electric fishes KW - pre-zygotic isolation KW - species recognition Y1 - 2018 U6 - https://doi.org/10.1098/rsos.170443 SN - 2054-5703 VL - 5 IS - 2 PB - Royal Society CY - London ER - TY - JOUR A1 - Stoessel, Daniel A1 - Stellmann, Jan-Patrick A1 - Willing, Anne A1 - Behrens, Birte A1 - Rosenkranz, Sina C. A1 - Hodecker, Sibylle C. A1 - Stuerner, Klarissa H. A1 - Reinhardt, Stefanie A1 - Fleischer, Sabine A1 - Deuschle, Christian A1 - Maetzler, Walter A1 - Berg, Daniela A1 - Heesen, Christoph A1 - Walther, Dirk A1 - Schauer, Nicolas A1 - Friese, Manuel A. A1 - Pless, Ole T1 - Metabolomic Profiles for Primary Progressive Multiple Sclerosis Stratification and Disease Course Monitoring JF - Frontiers in human neuroscienc N2 - Primary progressive multiple sclerosis (PPMS) shows a highly variable disease progression with poor prognosis and a characteristic accumulation of disabilities in patients. These hallmarks of PPMS make it difficult to diagnose and currently impossible to efficiently treat. This study aimed to identify plasma metabolite profiles that allow diagnosis of PPMS and its differentiation from the relapsing remitting subtype (RRMS), primary neurodegenerative disease (Parkinson’s disease, PD), and healthy controls (HCs) and that significantly change during the disease course and could serve as surrogate markers of multiple sclerosis (MS)-associated neurodegeneration over time. We applied untargeted high-resolution metabolomics to plasma samples to identify PPMS-specific signatures, validated our findings in independent sex- and age-matched PPMS and HC cohorts and built discriminatory models by partial least square discriminant analysis (PLS-DA). This signature was compared to sex- and age-matched RRMS patients, to patients with PD and HC. Finally, we investigated these metabolites in a longitudinal cohort of PPMS patients over a 24-month period. PLS-DA yielded predictive models for classification along with a set of 20 PPMS-specific informative metabolite markers. These metabolites suggest disease-specific alterations in glycerophospholipid and linoleic acid pathways. Notably, the glycerophospholipid LysoPC(20:0) significantly decreased during the observation period. These findings show potential for diagnosis and disease course monitoring, and might serve as biomarkers to assess treatment efficacy in future clinical trials for neuroprotective MS therapies. KW - untargeted metabolomics KW - biomarker KW - PPMS KW - MS neurodegeneration KW - LysoPC(20:0) Y1 - 2018 U6 - https://doi.org/10.3389/fnhum.2018.00226 SN - 1662-5161 VL - 12 PB - Frontiers Research Foundation CY - Lausanne ER -