TY  - JOUR
A1  - Cheng, Shifeng
A1  - van den Bergh, Erik
A1  - Zeng, Peng
A1  - Zhong, Xiao
A1  - Xu, Jiajia
A1  - Liu, Xin
A1  - Hofberger, Johannes
A1  - de Bruijn, Suzanne
A1  - Bhide, Amey S.
A1  - Kuelahoglu, Canan
A1  - Bian, Chao
A1  - Chen, Jing
A1  - Fan, Guangyi
A1  - Kaufmann, Kerstin
A1  - Hall, Jocelyn C.
A1  - Becker, Annette
A1  - Bräutigam, Andrea
A1  - Weber, Andreas P. M.
A1  - Shi, Chengcheng
A1  - Zheng, Zhijun
A1  - Li, Wujiao
A1  - Lv, Mingju
A1  - Tao, Yimin
A1  - Wang, Junyi
A1  - Zou, Hongfeng
A1  - Quan, Zhiwu
A1  - Hibberd, Julian M.
A1  - Zhang, Gengyun
A1  - Zhu, Xin-Guang
A1  - Xu, Xun
A1  - Schranz, M. Eric
T1  - The Tarenaya hassleriana Genome Provides insight Into Reproductive Trait and Genome Evolution of Crucifers
JF  - The plant cell
N2  - The Brassicaceae, including Arabidopsis thaliana and Brassica crops, is unmatched among plants in its wealth of genomic and functional molecular data and has long served as a model for understanding gene, genome, and trait evolution. However, genome information from a phylogenetic outgroup that is essential for inferring directionality of evolutionary change has been lacking. We therefore sequenced the genome of the spider flower (Tarenaya hassleriana) from the Brassicaceae sister family, the Cleomaceae. By comparative analysis of the two lineages, we show that genome evolution following ancient polyploidy and gene duplication events affect reproductively important traits. We found an ancient genome triplication in Tarenaya (Th-alpha) that is independent of the Brassicaceae-specific duplication (At-alpha) and nested Brassica (Br-a) triplication. To showcase the potential of sister lineage genome analysis, we investigated the state of floral developmental genes and show Brassica retains twice as many floral MADS (for MINICHROMOSOME MAINTENANCE1, AGAMOUS, DEFICIENS and SERUM RESPONSE FACTOR) genes as Tarenaya that likely contribute to morphological diversity in Brassica. We also performed synteny analysis of gene families that confer self-incompatibility in Brassicaceae and found that the critical SERINE RECEPTOR KINASE receptor gene is derived from a lineage-specific tandem duplication. The T. hassleriana genome will facilitate future research toward elucidating the evolutionary history of Brassicaceae genomes.
Y1  - 2013
U6  - https://doi.org/10.1105/tpc.113.113480
SN  - 1040-4651
VL  - 25
IS  - 8
SP  - 2813
EP  - 2830
PB  - American Society of Plant Physiologists
CY  - Rockville
ER  -