TY  - JOUR
A1  - Cook, Katherine V.
A1  - Li, Chuang
A1  - Cai, Haiyuan
A1  - Krumholz, Lee R.
A1  - Hambright, K. David
A1  - Paerl, Hans W.
A1  - Steffen, Morgan M.
A1  - Wilson, Alan E.
A1  - Burford, Michele A.
A1  - Grossart, Hans-Peter
A1  - Hamilton, David P.
A1  - Jiang, Helong
A1  - Sukenik, Assaf
A1  - Latour, Delphine
A1  - Meyer, Elisabeth I.
A1  - Padisak, Judit
A1  - Qin, Boqiang
A1  - Zamor, Richard M.
A1  - Zhu, Guangwei
T1  - The global Microcystis interactome
JF  - Limnology and oceanography
N2  - Bacteria play key roles in the function and diversity of aquatic systems, but aside from study of specific bloom systems, little is known about the diversity or biogeography of bacteria associated with harmful cyanobacterial blooms (cyanoHABs). CyanoHAB species are known to shape bacterial community composition and to rely on functions provided by the associated bacteria, leading to the hypothesized cyanoHAB interactome, a coevolved community of synergistic and interacting bacteria species, each necessary for the success of the others. Here, we surveyed the microbiome associated with Microcystis aeruginosa during blooms in 12 lakes spanning four continents as an initial test of the hypothesized Microcystis interactome. We predicted that microbiome composition and functional potential would be similar across blooms globally. Our results, as revealed by 16S rRNA sequence similarity, indicate that M. aeruginosa is cosmopolitan in lakes across a 280 degrees longitudinal and 90 degrees latitudinal gradient. The microbiome communities were represented by a wide range of operational taxonomic units and relative abundances. Highly abundant taxa were more related and shared across most sites and did not vary with geographic distance, thus, like Microcystis, revealing no evidence for dispersal limitation. High phylogenetic relatedness, both within and across lakes, indicates that microbiome bacteria with similar functional potential were associated with all blooms. While Microcystis and the microbiome bacteria shared many genes, whole-community metagenomic analysis revealed a suite of biochemical pathways that could be considered complementary. Our results demonstrate a high degree of similarity across global Microcystis blooms, thereby providing initial support for the hypothesized Microcystis interactome.
Y1  - 2019
U6  - https://doi.org/10.1002/lno.11361
SN  - 0024-3590
SN  - 1939-5590
VL  - 65
SP  - S194
EP  - S207
PB  - Wiley
CY  - Hoboken
ER  - 
TY  - GEN
A1  - Mooij, Wolf M.
A1  - Trolle, Dennis
A1  - Jeppesen, Erik
A1  - Arhonditsis, George B.
A1  - Belolipetsky, Pavel V.
A1  - Chitamwebwa, Deonatus B. R.
A1  - Degermendzhy, Andrey G.
A1  - DeAngelis, Donald L.
A1  - Domis, Lisette Nicole de Senerpont
A1  - Downing, Andrea S.
A1  - Elliott, J. Alex
A1  - Fragoso Jr., Carlos Ruberto
A1  - Gaedke, Ursula
A1  - Genova, Svetlana N.
A1  - Gulati, Ramesh D.
A1  - Håkanson, Lars
A1  - Hamilton, David P.
A1  - Hipsey, Matthew R.
A1  - ‘t Hoen, Jochem
A1  - Hülsmann, Stephan
A1  - Los, F. Hans
A1  - Makler-Pick, Vardit
A1  - Petzoldt, Thomas
A1  - Prokopkin, Igor G.
A1  - Rinke, Karsten
A1  - Schep, Sebastiaan A.
A1  - Tominaga, Koji
A1  - Van Dam, Anne A.
A1  - Van Nes, Egbert H.
A1  - Wells, Scott A.
A1  - Janse, Jan H.
T1  - Challenges and opportunities for integrating lake ecosystem modelling approaches
T2  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
N2  - A large number and wide variety of lake ecosystem models have been developed and published during the past four decades. We identify two challenges for making further progress in this field. One such challenge is to avoid developing more models largely following the concept of others ('reinventing the wheel'). The other challenge is to avoid focusing on only one type of model, while ignoring new and diverse approaches that have become available ('having tunnel vision'). In this paper, we aim at improving the awareness of existing models and knowledge of concurrent approaches in lake ecosystem modelling, without covering all possible model tools and avenues. First, we present a broad variety of modelling approaches. To illustrate these approaches, we give brief descriptions of rather arbitrarily selected sets of specific models. We deal with static models (steady state and regression models), complex dynamic models (CAEDYM, CE-QUAL-W2, Delft 3D-ECO, LakeMab, LakeWeb, MyLake, PCLake, PROTECH, SALMO), structurally dynamic models and minimal dynamic models. We also discuss a group of approaches that could all be classified as individual based: super-individual models (Piscator, Charisma), physiologically structured models, stage-structured models and traitbased models. We briefly mention genetic algorithms, neural networks, Kalman filters and fuzzy logic. Thereafter, we zoom in, as an in-depth example, on the multi-decadal development and application of the lake ecosystem model PCLake and related models (PCLake Metamodel, Lake Shira Model, IPH-TRIM3D-PCLake). In the discussion, we argue that while the historical development of each approach and model is understandable given its 'leading principle', there are many opportunities for combining approaches. We take the point of view that a single 'right' approach does not exist and should not be strived for. Instead, multiple modelling approaches, applied concurrently to a given problem, can help develop an integrative view on the functioning of lake ecosystems. We end with a set of specific recommendations that may be of help in the further development of lake ecosystem models.
T3  - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 1326 
KW  - aquatic
KW  - food web dynamics
KW  - plankton
KW  - nutrients
KW  - spatial
KW  - lake
KW  - freshwater
KW  - marine
KW  - community
KW  - population
KW  - hydrology
KW  - eutrophication
KW  - global change
KW  - climate warming
KW  - fisheries
KW  - biodiversity
KW  - management
KW  - mitigation
KW  - adaptive processes
KW  - non-linear dynamics
KW  - analysis
KW  - bifurcation
KW  - understanding
KW  - prediction
KW  - model limitations
KW  - model integration
Y1  - 2010
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-429839
SN  - 1866-8372
IS  - 1326
ER  - 
TY  - JOUR
A1  - Mooij, Wolf M.
A1  - Trolle, Dennis
A1  - Jeppesen, Erik
A1  - Arhonditsis, George B.
A1  - Belolipetsky, Pavel V.
A1  - Chitamwebwa, Deonatus B. R.
A1  - Degermendzhy, Andrey G.
A1  - DeAngelis, Donald L.
A1  - Domis, Lisette Nicole de Senerpont
A1  - Downing, Andrea S.
A1  - Elliott, J. Alex
A1  - Fragoso Jr, Carlos Ruberto
A1  - Gaedke, Ursula
A1  - Genova, Svetlana N.
A1  - Gulati, Ramesh D.
A1  - Håkanson, Lars
A1  - Hamilton, David P.
A1  - Hipsey, Matthew R.
A1  - ‘t Hoen, Jochem
A1  - Hülsmann, Stephan
A1  - Los, F. Hans
A1  - Makler-Pick, Vardit
A1  - Petzoldt, Thomas
A1  - Prokopkin, Igor G.
A1  - Rinke, Karsten
A1  - Schep, Sebastiaan A.
A1  - Tominaga, Koji
A1  - Van Dam, Anne A.
A1  - Van Nes, Egbert H.
A1  - Wells, Scott A.
A1  - Janse, Jan H.
T1  - Challenges and opportunities for integrating lake ecosystem modelling approaches
JF  - Aquatic ecology
N2  - A large number and wide variety of lake ecosystem models have been developed and published during the past four decades. We identify two challenges for making further progress in this field. One such challenge is to avoid developing more models largely following the concept of others ('reinventing the wheel'). The other challenge is to avoid focusing on only one type of model, while ignoring new and diverse approaches that have become available ('having tunnel vision'). In this paper, we aim at improving the awareness of existing models and knowledge of concurrent approaches in lake ecosystem modelling, without covering all possible model tools and avenues. First, we present a broad variety of modelling approaches. To illustrate these approaches, we give brief descriptions of rather arbitrarily selected sets of specific models. We deal with static models (steady state and regression models), complex dynamic models (CAEDYM, CE-QUAL-W2, Delft 3D-ECO, LakeMab, LakeWeb, MyLake, PCLake, PROTECH, SALMO), structurally dynamic models and minimal dynamic models. We also discuss a group of approaches that could all be classified as individual based: super-individual models (Piscator, Charisma), physiologically structured models, stage-structured models and traitbased models. We briefly mention genetic algorithms, neural networks, Kalman filters and fuzzy logic. Thereafter, we zoom in, as an in-depth example, on the multi-decadal development and application of the lake ecosystem model PCLake and related models (PCLake Metamodel, Lake Shira Model, IPH-TRIM3D-PCLake). In the discussion, we argue that while the historical development of each approach and model is understandable given its 'leading principle', there are many opportunities for combining approaches. We take the point of view that a single 'right' approach does not exist and should not be strived for. Instead, multiple modelling approaches, applied concurrently to a given problem, can help develop an integrative view on the functioning of lake ecosystems. We end with a set of specific recommendations that may be of help in the further development of lake ecosystem models.
KW  - aquatic
KW  - food web dynamics
KW  - plankton
KW  - nutrients
KW  - spatial
KW  - lake
KW  - freshwater
KW  - marine
KW  - community
KW  - population
KW  - hydrology
KW  - eutrophication
KW  - global change
KW  - climate warming
KW  - fisheries
KW  - biodiversity
KW  - management
KW  - mitigation
KW  - adaptive processes
KW  - non-linear dynamics
KW  - analysis
KW  - bifurcation
KW  - understanding
KW  - prediction
KW  - model limitations
KW  - model integration
Y1  - 2010
U6  - https://doi.org/10.1007/s10452-010-9339-3
SN  - 1573-5125
SN  - 1386-2588
VL  - 44
SP  - 633
EP  - 667
PB  - Springer Science + Business Media B.V.
CY  - Dordrecht
ER  -