@phdthesis{Ghaisari2017, author = {Ghaisari, Sara}, title = {Magnetic anisotropy analysis of magnetic nanoparticles in magnetotactic bacteria}, school = {Universit{\"a}t Potsdam}, pages = {115}, year = {2017}, language = {en} } @phdthesis{Sachse2017, author = {Sachse, Manuel}, title = {Dynamics and distribution of dust ejected from the Galilean moons of Jupiter}, school = {Universit{\"a}t Potsdam}, pages = {105}, year = {2017}, language = {en} } @phdthesis{Ohliger2012, author = {Ohliger, Matthias}, title = {Characterizing and measuring properties of continuous-variable quantum states}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-62924}, school = {Universit{\"a}t Potsdam}, year = {2012}, abstract = {We investigate properties of quantum mechanical systems in the light of quantum information theory. We put an emphasize on systems with infinite-dimensional Hilbert spaces, so-called continuous-variable systems'', which are needed to describe quantum optics beyond the single photon regime and other Bosonic quantum systems. We present methods to obtain a description of such systems from a series of measurements in an efficient manner and demonstrate the performance in realistic situations by means of numerical simulations. We consider both unconditional quantum state tomography, which is applicable to arbitrary systems, and tomography of matrix product states. The latter allows for the tomography of many-body systems because the necessary number of measurements scales merely polynomially with the particle number, compared to an exponential scaling in the generic case. We also present a method to realize such a tomography scheme for a system of ultra-cold atoms in optical lattices. Furthermore, we discuss in detail the possibilities and limitations of using continuous-variable systems for measurement-based quantum computing. We will see that the distinction between Gaussian and non-Gaussian quantum states and measurements plays an crucial role. We also provide an algorithm to solve the large and interesting class of naturally occurring Hamiltonians, namely frustration free ones, efficiently and use this insight to obtain a simple approximation method for slightly frustrated systems. To achieve this goals, we make use of, among various other techniques, the well developed theory of matrix product states, tensor networks, semi-definite programming, and matrix analysis.}, language = {en} } @phdthesis{Niedermayer2012, author = {Niedermayer, Thomas}, title = {On the depolymerization of actin filaments}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-63605}, school = {Universit{\"a}t Potsdam}, year = {2012}, abstract = {Actin is one of the most abundant and highly conserved proteins in eukaryotic cells. The globular protein assembles into long filaments, which form a variety of different networks within the cytoskeleton. The dynamic reorganization of these networks - which is pivotal for cell motility, cell adhesion, and cell division - is based on cycles of polymerization (assembly) and depolymerization (disassembly) of actin filaments. Actin binds ATP and within the filament, actin-bound ATP is hydrolyzed into ADP on a time scale of a few minutes. As ADP-actin dissociates faster from the filament ends than ATP-actin, the filament becomes less stable as it grows older. Recent single filament experiments, where abrupt dynamical changes during filament depolymerization have been observed, suggest the opposite behavior, however, namely that the actin filaments become increasingly stable with time. Several mechanisms for this stabilization have been proposed, ranging from structural transitions of the whole filament to surface attachment of the filament ends. The key issue of this thesis is to elucidate the unexpected interruptions of depolymerization by a combination of experimental and theoretical studies. In new depolymerization experiments on single filaments, we confirm that filaments cease to shrink in an abrupt manner and determine the time from the initiation of depolymerization until the occurrence of the first interruption. This duration differs from filament to filament and represents a stochastic variable. We consider various hypothetical mechanisms that may cause the observed interruptions. These mechanisms cannot be distinguished directly, but they give rise to distinct distributions of the time until the first interruption, which we compute by modeling the underlying stochastic processes. A comparison with the measured distribution reveals that the sudden truncation of the shrinkage process neither arises from blocking of the ends nor from a collective transition of the whole filament. Instead, we predict a local transition process occurring at random sites within the filament. The combination of additional experimental findings and our theoretical approach confirms the notion of a local transition mechanism and identifies the transition as the photo-induced formation of an actin dimer within the filaments. Unlabeled actin filaments do not exhibit pauses, which implies that, in vivo, older filaments become destabilized by ATP hydrolysis. This destabilization can be identified with an acceleration of the depolymerization prior to the interruption. In the final part of this thesis, we theoretically analyze this acceleration to infer the mechanism of ATP hydrolysis. We show that the rate of ATP hydrolysis is constant within the filament, corresponding to a random as opposed to a vectorial hydrolysis mechanism.}, language = {en} } @phdthesis{Ghani2012, author = {Ghani, Fatemeh}, title = {Nucleation and growth of unsubstituted metal phthalocyanine films from solution on planar substrates}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-64699}, school = {Universit{\"a}t Potsdam}, year = {2012}, abstract = {Organic solar cells (OSC) are interesting as low cost alternative to conventional solar cells. Unsubstituted Metal-phthalocyanines (Pc) are excellent electron donating molecules for heterojunction OSC. Usually organic solar cells with Pcs are produced by vapor deposition, although solution based deposition (like spin casting) is cheaper and offers more possibilities to control the structure of the film. With solution based deposition several parameters (like temperature, solvent and etc.) affect the self-organized structure formation via nucleation and growth. The reason why vapor deposition is typically used is the poor solubility of the metal-phthalocyanines in most common solvents. Furthermore the process of nucleation and growth of Pc aggregates from solution is not well understood. For preparation of Pc films from solution, it is necessary to find the appropriate solvents, assess the solution deposition techniques, such as dip coating, and spin casting. It is necessary to understand the nucleation and growth process for aggregation/precipitation and to use this knowledge to produce nanostructures appropriate for OSC. This is important because the nanostructure of the films determines their performance. In this thesis, optical absorption and the stability of 8 different unsubstituted metal Pc's were studied quantitatively in 28 different solvents. Among the several solution based deposited thin films produced based on this study, copper phthalocyanine (CuPc) dissolved in trifluoroacetic acid (TFA) is chosen as a model system for an in-depth study. CuPc has sufficient solubility and stability in TFA and upon solution processing forms appropriate structures for OSCs. CuPc molecules aggregate into layers of nanoribbons with a thickness of ~ 1 nm and an adjustable width and length. The morphology and the number of deposited layers in the thin films are controlled by different parameters, like temperature and solution concentration. Material properties of CuPc deposited from TFA are studied in detail via x-ray diffraction, UV-Vis and FT-IR spectroscopy. Atomic force microscopy was used to study the morphology of the dried film. The mechanism of the formation of CuPc nanoribbons from spin casted CuPc/TFA solution in ambient temperature is investigated and explained. The parameters (e.g. solution concentration profile) governing nucleation and growth are calculated based on the spin casting theory of a binary mixture of a nonvolatile solute and evaporative solvent. Based on this and intermolecular interactions between CuPc and substrate a nucleation and growth model is developed explaining the aggregation of CuPc in a supersaturated TFA solution. Finally, a solution processed thin film of CuPc is applied as a donor layer in a functioning bilayer heterojunction OSC and the influence of the structure on OSC performance is studied.}, language = {en} } @phdthesis{Muench2018, author = {M{\"u}nch, Thomas}, title = {Interpretation of temperature signals from ice cores}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-414963}, school = {Universit{\"a}t Potsdam}, pages = {xxi, 197}, year = {2018}, abstract = {Earth's climate varies continuously across space and time, but humankind has witnessed only a small snapshot of its entire history, and instrumentally documented it for a mere 200 years. Our knowledge of past climate changes is therefore almost exclusively based on indirect proxy data, i.e. on indicators which are sensitive to changes in climatic variables and stored in environmental archives. Extracting the data from these archives allows retrieval of the information from earlier times. Obtaining accurate proxy information is a key means to test model predictions of the past climate, and only after such validation can the models be used to reliably forecast future changes in our warming world. The polar ice sheets of Greenland and Antarctica are one major climate archive, which record information about local air temperatures by means of the isotopic composition of the water molecules embedded in the ice. However, this temperature proxy is, as any indirect climate data, not a perfect recorder of past climatic variations. Apart from local air temperatures, a multitude of other processes affect the mean and variability of the isotopic data, which hinders their direct interpretation in terms of climate variations. This applies especially to regions with little annual accumulation of snow, such as the Antarctic Plateau. While these areas in principle allow for the extraction of isotope records reaching far back in time, a strong corruption of the temperature signal originally encoded in the isotopic data of the snow is expected. This dissertation uses observational isotope data from Antarctica, focussing especially on the East Antarctic low-accumulation area around the Kohnen Station ice-core drilling site, together with statistical and physical methods, to improve our understanding of the spatial and temporal isotope variability across different scales, and thus to enhance the applicability of the proxy for estimating past temperature variability. The presented results lead to a quantitative explanation of the local-scale (1-500 m) spatial variability in the form of a statistical noise model, and reveal the main source of the temporal variability to be the mixture of a climatic seasonal cycle in temperature and the effect of diffusional smoothing acting on temporally uncorrelated noise. These findings put significant limits on the representativity of single isotope records in terms of local air temperature, and impact the interpretation of apparent cyclicalities in the records. Furthermore, to extend the analyses to larger scales, the timescale-dependency of observed Holocene isotope variability is studied. This offers a deeper understanding of the nature of the variations, and is crucial for unravelling the embedded true temperature variability over a wide range of timescales.}, language = {en} } @phdthesis{Codutti2018, author = {Codutti, Agnese}, title = {Behavior of magnetic microswimmers}, doi = {10.25932/publishup-42297}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-422976}, school = {Universit{\"a}t Potsdam}, pages = {iv, 142}, year = {2018}, abstract = {Microswimmers, i.e. swimmers of micron size experiencing low Reynolds numbers, have received a great deal of attention in the last years, since many applications are envisioned in medicine and bioremediation. A promising field is the one of magnetic swimmers, since magnetism is biocom-patible and could be used to direct or actuate the swimmers. This thesis studies two examples of magnetic microswimmers from a physics point of view. The first system to be studied are magnetic cells, which can be magnetic biohybrids (a swimming cell coupled with a magnetic synthetic component) or magnetotactic bacteria (naturally occurring bacteria that produce an intracellular chain of magnetic crystals). A magnetic cell can passively interact with external magnetic fields, which can be used for direction. The aim of the thesis is to understand how magnetic cells couple this magnetic interaction to their swimming strategies, mainly how they combine it with chemotaxis (the ability to sense external gradient of chemical species and to bias their walk on these gradients). In particular, one open question addresses the advantage given by these magnetic interactions for the magnetotactic bacteria in a natural environment, such as porous sediments. In the thesis, a modified Active Brownian Particle model is used to perform simulations and to reproduce experimental data for different systems such as bacteria swimming in the bulk, in a capillary or in confined geometries. I will show that magnetic fields speed up chemotaxis under special conditions, depending on parameters such as their swimming strategy (run-and-tumble or run-and-reverse), aerotactic strategy (axial or polar), and magnetic fields (intensities and orientations), but it can also hinder bacterial chemotaxis depending on the system. The second example of magnetic microswimmer are rigid magnetic propellers such as helices or random-shaped propellers. These propellers are actuated and directed by an external rotating magnetic field. One open question is how shape and magnetic properties influence the propeller behavior; the goal of this research field is to design the best propeller for a given situation. The aim of the thesis is to propose a simulation method to reproduce the behavior of experimentally-realized propellers and to determine their magnetic properties. The hydrodynamic simulations are based on the use of the mobility matrix. As main result, I propose a method to match the experimental data, while showing that not only shape but also the magnetic properties influence the propellers swimming characteristics.}, language = {en} } @phdthesis{Landau2020, author = {Landau, Livnat}, title = {Mechanical stimulation of in-vitro tissue growth using magnetic beads}, pages = {112}, year = {2020}, abstract = {Cells and tissues are sensitive to mechanical forces applied to them. In particular, bone forming cells and connective tissues, composed of cells embedded in fibrous extracellular matrix (ECM), are continuously remodeled in response to the loads they bear. The mechanoresponses of cells embedded in tissue include proliferation, differentiation, apoptosis, internal signaling between cells, and formation and resorption of tissue. Experimental in-vitro systems of various designs have demonstrated that forces affect tissue growth, maturation and mineralization. However, the results depended on different parameters such as the type and magnitude of the force applied in each study. Some experiments demonstrated that applied forces increase cell proliferation and inhibit cell maturation rate, while other studies found the opposite effect. When the effect of different magnitudes of forces was compared, some studies showed that higher forces resulted in a cell proliferation increase or differentiation decrease, while other studies observed the opposite trend or no trend at all. In this study, MC3T3-E1 cells, a cell line of pre-osteoblasts (bone forming cells), was used. In this cell line, cell differentiation is known to accelerate after cells stop proliferating, typically at confluency. This makes this cell line an interesting subject for studying the influence of forces on the switch between the proliferation stage of the precursor cell and the differentiation to the mature osteoblasts. A new experimental system was designed to perform systematic investigations of the influence of the type and magnitude of forces on tissue growth. A single well plate contained an array of 80 rectangular pores. Each pore was seeded with MC3T3-E1 cells. The culture medium contained magnetic beads (MBs) of 4.5 μm in diameter that were incorporated into the pre-osteoblast cells. Using an N52 neodymium magnet, forces ranging over three orders of magnitude were applied to MBs incorporated in cells at 10 different distances from the magnet. The amount of formed tissue was assessed after 24 days of culture. The experimental design allowed to obtain data concerning (i) the influence of the type of the force (static, oscillating, no force) on tissue growth; (ii) the influence of the magnitude of force (pN-nN range); (iii) the effect of functionalizing the magnetic beads with the tripeptide Arg-Gly-Asp (RGD). To learn about cell differentiation state, in the final state of the tissue growth experiments, an analysis for the expression of alkaline phosphatase (ALP), a well - known marker of osteoblast differentiation, was performed. The experiments showed that the application of static magnetic forces increased tissue growth compared to control, while oscillating forces resulted in tissue growth reduction. A statistically significant positive correlation was found between the amount of tissue grown and the magnitude of the oscillating magnetic force. A positive but non-significant correlation of the amount of tissue with the magnitude of forces was obtained when static forces were applied. Functionalizing the MBs with RGD peptides and applying oscillating forces resulted in an increase of tissue growth relative to tissues incubated with "plain" epoxy MBs. ALP expression decreased as a function of the magnitude of force both when static and oscillating forces were applied. ALP stain intensity was reduced relative to control when oscillating forces were applied and was not significantly different than control for static forces. The suggested interpretation of the experimental findings is that larger mechanical forces delay cell maturation and keep the pre-osteoblasts in a more proliferative stage characterized by more tissue formed and lower expression of ALP. While the influence of the force magnitude can be well explained by an effect of the force on the switch between proliferation and differentiation, the influence of force type (static or oscillating) is less clear. In particular, it is challenging to reconcile the reduction of tissue formed under oscillating forces as compared to controls with the simultaneous reduction of ALP expression. To better understand this, it may be necessary to refine the staining protocol of the scaffolds and to include the amount and structure of ECM as well as other factors that were not monitored in the experiment and which may influence tissue growth and maturation. The developed experimental system proved well suited for a systematic and efficient study of the mechanoresponsiveness of tissue growth, it allowed a study of the dependence of tissue growth on force magnitude ranging over three orders of magnitude, and a comparison between the effect of static and oscillating forces. Future experiments can explore the multiple parameters that affect tissue growth as a function of the magnitude of the force: by applying different time-dependent forces; by extending the force range studied; or by using different cell lines and manipulating the mechanotransduction in the cells biochemically.}, language = {en} } @phdthesis{Sander2015, author = {Sander, Andreas Alexander Christoph}, title = {Radiatively driven winds of hot stars}, school = {Universit{\"a}t Potsdam}, pages = {153}, year = {2015}, language = {en} } @phdthesis{Siegel2015, author = {Siegel, Daniel}, title = {Binary neutron star mergers and short gamma-ray bursts}, school = {Universit{\"a}t Potsdam}, pages = {255}, year = {2015}, language = {en} } @phdthesis{Schreck2014, author = {Schreck, Simon Frederik}, title = {Potential energy surfaces, femtosecond dynamics and nonlinear X-Ray-Matter interactions from resonant inelastic soft x-Ray scattering}, pages = {164}, year = {2014}, language = {en} } @phdthesis{Faber2014, author = {Faber, Michael}, title = {Folding dynamics of RNA secondary structures}, pages = {85}, year = {2014}, language = {en} } @phdthesis{Zhou2014, author = {Zhou, Xu}, title = {Atmospheric interactions with land surface in the arctic based on regional climate model solutions}, pages = {143}, year = {2014}, language = {en} } @phdthesis{KianiAlibagheri2017, author = {Kiani Alibagheri, Bahareh}, title = {On structural properties of magnetosome chains}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-398849}, school = {Universit{\"a}t Potsdam}, pages = {XIV, 117}, year = {2017}, abstract = {Magnetotaktische Bakterien besitzen eine intrazellul{\"a}re Struktur, die Magnetosomenkette genannt wird. Magnetosomenketten enthalten Nanopartikel von Eisenkristallen, die von einer Membran umschlossen und entlang eines Zytoskelettfilaments ausgerichtet sind. Dank der Magnetosomenkette ist es magnetotaktischen Bakterien m{\"o}glich sich in Magnetfeldern auszurichten und entlang magnetischer Feldlinien zu schwimmen. Die ausf{\"u}hrliche Untersuchung der strukturellen Eigenschaften der Magnetosomenkette in magnetotaktischen Bakterien sind von grundlegendem wissenschaftlichen Interesse, weil sie Einblicke in die Anordnung des Zytoskeletts von Bakterien erlauben. In dieser Studie haben wir ein neues theoretisches Modell entwickelt, dass sich dazu eignet, die strukturellen Eigenschaften der Magnetosomenketten in magnetotaktischen Bakterien zu erforschen. Zuerst wenden wir uns der Biegesteifigkeit von Magnetosomenketten zu, die von zwei Faktoren beeinflusst wird: Die magnetische Wechselwirkung der Magnetosomenpartikel und der Biegesteifigkeit des Zytoskelettfilaments auf welchem die Magnetosome verankert sind. Unsere Analyse zeigt, dass sich die lineare Konfiguration von Magnetosomenpartikeln ohne die Stabilisierung durch das Zytoskelett zu einer ring{\"o}rmigen Struktur biegen w{\"u}rde, die kein magnetisches Moment aufweist und daher nicht die Funktion eines Kompass in der zellul{\"a}ren Navigation einnehmen k{\"o}nnte. Wir schlussfolgern, dass das Zytoskelettfilament eine stabilisierende Wirkung auf die lineare Konfiguration hat und eine ringf{\"o}rmige Anordnung verhindert. Wir untersuchen weiter die Gleichgewichtskonfiguration der Magnetosomenpartikel in einer linearen Kette und in einer geschlossenen ringf{\"o}rmigen Struktur. Dabei beobachteten wir ebenfalls, dass f{\"u}r eine stabile lineare Anordnung eine Bindung an ein Zytoskelettfilament notwendig ist. In einem externen magnetischen Feld wird die Stabilit{\"a}t der Magnetosomenketten durch die Dipol-Dipol-Wechselwirkung, {\"u}ber die Steifheit und die Bindungsenergie der Proteinstruktur, die die Partikel des Magnetosomen mit dem Filament verbinden, erreicht. Durch Beobachtungen w{\"a}hrend und nach der Behandlung einer Magnetosomenkette mit einem externen magnetischen Feld, l{\"a}sst sich begr{\"u}nden, dass die Stabilisierung von Magnetosomenketten durch Zytoskelettfilamente {\"u}ber proteinhaltige Bindeglieder und die dynamischen Eigenschaften dieser Strukturen realisiert wird. Abschließend wenden wir unser Modell bei der Untersuchung von ferromagnetischen Resonanz-Spektren von Magnetosomenketten in einzelnen Zellen von magnetotaktischen Bakterien an. Wir erforschen den Effekt der magnetokristallinen Anistropie in ihrer dreifach-Symmetrie, die in ferromagnetischen Ressonanz Spektren beobachtet wurden und die Besonderheit von verschiedenen Spektren, die bei Mutanten dieser Bakterien auftreten.}, language = {en} } @phdthesis{CanUcar2017, author = {Can Ucar, Mehmet}, title = {Elastic interactions between antagonistic molecular motors}, school = {Universit{\"a}t Potsdam}, pages = {106}, year = {2017}, language = {en} } @phdthesis{Guber2017, author = {Guber, Christoph Rudolf}, title = {Dust depletion of Ca and Ti in quasar absorption-line systems}, school = {Universit{\"a}t Potsdam}, pages = {178}, year = {2017}, language = {en} } @phdthesis{Ehrig2017, author = {Ehrig, Sebastian}, title = {3D curvature and its role on tissue organization}, school = {Universit{\"a}t Potsdam}, pages = {132}, year = {2017}, abstract = {Shape change is a fundamental process occurring in biological tissues during embryonic development and regeneration of tissues and organs. This process is regulated by cells that are constrained within a complex environment of biochemical and physical cues. The spatial constraint due to geometry has a determining role on tissue mechanics and the spatial distribution of force patterns that, in turn, influences the organization of the tissue structure. An understanding of the underlying principles of tissue organization may have wide consequences for the understanding of healing processes and the development of organs and, as such, is of fundamental interest for the tissue engineering community. This thesis aims to further our understanding of how the collective behaviour of cells is influenced by the 3D geometry of the environment. Previous research studying the role of geometry on tissue growth has mainly focused either on flat surfaces or on substrates where at least one of the principal curvatures is zero. In the present work, tissue growth from MC3T3-E1 pre-osteoblasts was investigated on surfaces of controlled mean curvature. One key aspect of this thesis was the development of substrates of controlled mean curvature and their visualization in 3D. It was demonstrated that substrates of controlled mean curvature suitable for cell culture can be fabricated using liquid polymers and surface tension effects. Using these substrates, it was shown that the mean surface curvature has a strong impact on the rate of tissue growth and on the organization of the tissue structure. It was thereby not only demonstrated that the amount of tissue produced (i.e. growth rates) by the cells depends on the mean curvature of the substrate but also that the tissue surface behaves like a viscous fluid with an equilibrium shape governed by the Laplace-Young-law. It was observed that more tissue was formed on highly concave surfaces compared to flat or convex surfaces. Motivated by these observations, an analytical model was developed, where the rate of tissue growth is a function of the mean curvature, which could successfully describe the growth kinetics. This model was also able to reproduce the growth kinetics of previous experiments where tissues have been cultured in straight-sided prismatic pores. A second part of this thesis focuses on the tissue structure, which influences the mechanical properties of the mature bone tissue. Since the extracellular matrix is produced by the cells, the cell orientation has a strong impact on the direction of the tissue fibres. In addition, it was recently shown that some cell types exhibit collective alignment similar to liquid crystals. Based on this observation, a computational model of self-propelled active particles was developed to explore in an abstract manner how the collective behaviour of cells is influenced by 3D curvature. It was demonstrated that the 3D curvature has a strong impact on the self-organization of active particles and gives, therefore, first insights into the principles of self-organization of cells on curved surfaces.}, language = {en} } @phdthesis{ThielemannKuehn2017, author = {Thielemann-K{\"u}hn, Nele}, title = {Optically induced ferro- and antiferromagnetic dynamics in the rare-earth metal dysprosium}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-402994}, school = {Universit{\"a}t Potsdam}, pages = {iv, 121}, year = {2017}, abstract = {Approaching physical limits in speed and size of today's magnetic storage and processing technologies demands new concepts for controlling magnetization and moves researches on optically induced magnetic dynamics. Studies on photoinduced magnetization dynamics and their underlying mechanisms have been primarily performed on ferromagnetic metals. Ferromagnetic dynamics bases on transfer of the conserved angular momentum connected with atomic magnetic moments out of the parallel aligned magnetic system into other degrees of freedom. In this thesis the so far rarely studied response of antiferromagnetic order to ultra-short optical laser pulses in a metal is investigated. The experiments were performed at the FemtoSpex slicing facility at the storage ring BESSY II, an unique source for ultra-short elliptically polarized x-ray pulses. Laser-induced changes of the 4f-magnetic order parameter in ferro- and antiferromagnetic dysprosium (Dy), were studied by x-ray methods, which yield directly comparable quantities. The discovered fundamental differences in the temporal and spatial behavior of ferro- and antiferrmagnetic dynamics are assinged to an additional channel for angular momentum transfer, which reduces the antiferromagnetic order by redistributing angular momentum within the non-parallel aligned magnetic system, and hence conserves the zero net magnetization. It is shown that antiferromagnetic dynamics proceeds considerably faster and more energy-efficient than demagnetization in ferromagnets. By probing antiferromagnetic order in time and space, it is found to be affected along the whole sample depth of an in situ grown 73 nm tick Dy film. Interatomic transfer of angular momentum via fast diffusion of laser-excited 5d electrons is held responsible for the out-most long-ranging effect. Ultrafast ferromagnetic dynamics can be expected to base on the same origin, which however leads to demagnetization only in regions close to interfaces caused by super-diffusive spin transport. Dynamics due to local scattering processes of excited but less mobile electrons, occur in both magnetic alignments only in directly excited regions of the sample and on slower pisosecond timescales. The thesis provides fundamental insights into photoinduced magnetic dynamics by directly comparing ferro- and antiferromagnetic dynamics in the same material and by consideration of the laser-induced magnetic depth profile.}, language = {en} } @phdthesis{Goktas2019, author = {Goktas, Melis}, title = {Coiled coils as molecular force sensors for the extracellular matrix}, doi = {10.25932/publishup-42749}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-427493}, school = {Universit{\"a}t Potsdam}, pages = {xiv, 124}, year = {2019}, abstract = {Kraft spielt eine fundamentale Rolle bei der Regulation von biologischen Prozessen. Zellen messen mechanische Eigenschaften der extrazellul{\"a}ren Matrix und benutzen diese Information zur Regulierung ihrer Funktion. Dazu werden im Zytoskelett Kr{\"a}fte generiert und auf extrazellul{\"a}re Rezeptor-Ligand Wechselwirkungen {\"u}bertragen. Obwohl der grundlegende Einfluss von mechanischen Signalen f{\"u}r das Zellschicksal eindeutig belegt ist, sind die auf molekularer Ebene wirkenden Kr{\"a}fte kaum bekannt. Zur Messung dieser Kr{\"a}fte wurden verschiedene molekulare Kraftsensoren entwickelt, die ein mechanisches Inputsignal aufnehmen und in einen optischen Output (Fluoreszenz) umwandeln. Diese Arbeit etabliert einen neuen Kraftsensor-Baustein, der die mechanischen Eigenschaften der extrazellul{\"a}ren Matrix nachbildet. Dieser Baustein basiert auf nat{\"u}rlichen Matrixproteinen, sogenannten coiled coils (CCs), die α-helikale Strukturen im Zytoskelett und der Matrix formen. Eine Serie an CC-Heterodimeren wurde konzipiert und mittels Einzelmolek{\"u}l-Kraftspektroskopie und Molekulardynamik-Simulationen charakterisiert. Es wurde gezeigt, dass eine anliegende Scherkraft die Entfaltung der helikalen Struktur induziert. Die mechanische Stabilit{\"a}t (Separation der CC Helices) wird von der CC L{\"a}nge und der Zuggeschwindigkeit bestimmt. Im Folgenden wurden 2 CCs unterschiedlicher L{\"a}nge als Kraftsensoren verwendet, um die Adh{\"a}sionskr{\"a}fte von Fibroblasten und Endothelzellen zu untersuchen. Diese Kraftsensoren deuten an, dass diese Zelltypen unterschiedlich starke Kr{\"a}ften generieren und mittels Integrin-Rezeptoren auf einen extrazellul{\"a}ren Liganden (RGD-Peptid) {\"u}bertragen. Dieses neue CC-basierte Sensordesign ist ein leistungsstarkes Werkzeug zur Betrachtung zellul{\"a}rer Kraftwahrnehmungsprozesse auf molekularer Ebene, das neue Erkenntnisse {\"u}ber die involvierten Mechanismen und Kr{\"a}fte an der Zell-Matrix-Schnittstelle erm{\"o}glicht. Dar{\"u}ber hinaus wird dieses Sensordesign auch Anwendung bei der Entwicklung mechanisch kontrollierter Biomaterialien finden. Dazu k{\"o}nnen mechanisch charakterisierte, und mit einem Fluoreszenzreporter versehene, CCs in Hydrogele eingef{\"u}gt werden. Dies erlaubt die Untersuchung der Zusammenh{\"a}nge zwischen molekularer und makroskopischer Mechanik und er{\"o}ffnet neue M{\"o}glichkeiten zur Diskriminierung von lokalen und globalen Faktoren, die die zellul{\"a}re Antwort auf mechanische Signale bestimmen.}, language = {en} } @phdthesis{Solopow2019, author = {Solopow, Sergej}, title = {Wavelength dependent demagnetization dynamics in Co2MnGa Heusler-alloy}, doi = {10.25932/publishup-42786}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-427860}, school = {Universit{\"a}t Potsdam}, pages = {91}, year = {2019}, abstract = {In dieser Arbeit haben wir ultraschnelle Entmagnetisierung an einer Heusler-Legierung untersucht. Es handelt sich um ein Halbmetall, das sich in einer ferromagnetischen Phase befindet. Die Besonderheit dieses Materials besteht im Aufbau einer Bandstruktur. Diese bildet Zustandsdichten, in der die Majorit{\"a}tselektronen eine metallische B{\"a}nderbildung aufweisen und die Minorit{\"a}tselektronen eine Bandl{\"u}cke in der N{\"a}he des Fermi-Niveaus aufweisen, das dem Aufbau eines Halbleiters entspricht. Mit Hilfe der Pump-Probe-Experimente haben wir zeitaufgel{\"o}ste Messungen durchgef{\"u}hrt. F{\"u}r das Pumpen wurden ultrakurze Laserpulse mit einer Pulsdauer von 100 fs benutzt. Wir haben dabei zwei verschiedene Wellenl{\"a}ngen mit 400 nm und 1240 nm benutzt, um den Effekt der Prim{\"a}ranregung und der Bandl{\"u}cke in den Minorit{\"a}tszust{\"a}nden zu untersuchen. Dabei wurde zum ersten Mal OPA (Optical Parametrical Amplifier) f{\"u}r die Erzeugung der langwelligen Pulse an der FEMTOSPEX-Beamline getestet und erfolgreich bei den Experimenten verwendet. Wir haben Wellenl{\"a}ngen bedingte Unterschiede in der Entmagnetisierungszeit gemessen. Mit der Erh{\"o}hung der Photonenenergie ist der Prozess der Entmagnetisierung deutlich schneller als bei einer niedrigeren Photonenenergie. Wir verkn{\"u}pften diese Ergebnisse mit der Existenz der Energiel{\"u}cke f{\"u}r Minorit{\"a}tselektronen. Mit Hilfe lokaler Elliot-Yafet-Streuprozesse k{\"o}nnen die beobachteten Zeiten gut erkl{\"a}rt werden. Wir haben in dieser Arbeit auch eine neue Probe-Methode f{\"u}r die Magnetisierung angewandt und somit experimentell deren Effektivit{\"a}t, n{\"a}mlich XMCD in Refletiongeometry, best{\"a}tigen k{\"o}nnen. Statische Experimente liefern somit deutliche Indizien daf{\"u}r, dass eine magnetische von einer rein elektronischen Antwort des Systems getrennt werden kann. Unter der Voraussetzung, dass die Photonenenergie der R{\"o}ntgenstrahlung auf die L3 Kante des entsprechenden Elements eingestellt, ein geeigneter Einfallswinkel gew{\"a}hlt und die zirkulare Polarisation fixiert wird, ist es m{\"o}glich, diese Methode zur Analyse magnetischer und elektronischer Respons anzuwenden.}, language = {en} } @phdthesis{Arora2018, author = {Arora, Ashima}, title = {Optical and electric field control of magnetism}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-421479}, school = {Universit{\"a}t Potsdam}, pages = {ii, 126}, year = {2018}, abstract = {Future magnetic recording industry needs a high-density data storage technology. However, switching the magnetization of small bits requires high magnetic fields that cause excessive heat dissipation. Therefore, controlling magnetism without applying external magnetic field is an important research topic for potential applications in data storage devices with low power consumption. Among the different approaches being investigated, two of them stand out, namely i) all-optical helicity dependent switching (AO-HDS) and ii) ferroelectric control of magnetism. This thesis aims to contribute towards a better understanding of the physical processes behinds these effects as well as reporting new and exciting possibility for the optical and/or electric control of magnetic properties. Hence, the thesis contains two differentiated chapters of results; the first devoted to AO-HDS on TbFe alloys and the second to the electric field control of magnetism in an archetypal Fe/BaTiO3 system. In the first part, the scalability of the AO-HDS to small laser spot-sizes of few microns in the ferrimagnetic TbFe alloy is investigated by spatially resolving the magnetic contrast with photo-emission electron microscopy (PEEM) and X-ray magnetic circular dichroism (XMCD). The results show that the AO-HDS is a local effect within the laser spot size that occurs in the ring-shaped region in the vicinity of thermal demagnetization. Within the ring region, the helicity dependent switching occurs via thermally activated domain wall motion. Further, the thesis reports on a novel effect of thickness dependent inversion of the switching orientation. It addresses some of the important questions like the role of laser heating and the microscopic mechanism driving AO-HDS. The second part of the thesis focuses on the electric field control of magnetism in an artificial multiferroic heterostructure. The sample consists of an Fe wedge with thickness varying between 0:5 nm and 3 nm, deposited on top of a ferroelectric and ferroelastic BaTiO3 [001]-oriented single crystal substrate. Here, the magnetic contrast is imaged via PEEM and XMCD as a function of out-of-plane voltage. The results show the evidence of the electric field control of superparamagnetism mediated by a ferroelastic modification of the magnetic anisotropy. The changes in the magnetoelastic anisotropy drive the transition from the superparamagnetic to superferromagnetic state at localized sample positions.}, language = {en} } @phdthesis{Kav2019, author = {Kav, Batuhan}, title = {Membrane adhesion mediated via lipid-anchored saccharides}, doi = {10.25932/publishup-42879}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-428790}, school = {Universit{\"a}t Potsdam}, pages = {125}, year = {2019}, abstract = {Membrane adhesion is a fundamental biological process in which membranes are attached to neighboring membranes or surfaces. Membrane adhesion emerges from a complex interplay between the binding of membrane-anchored receptors/ligands and the membrane properties. In this work, we study membrane adhesion mediated by lipid-anchored saccharides using microsecond-long full-atomistic molecular dynamics simulations. Motivated by neutron scattering experiments on membrane adhesion via lipid-anchored saccharides, we investigate the role of LeX, Lac1, and Lac2 saccharides and membrane fluctuations in membrane adhesion. We study the binding of saccharides in three different systems: for saccharides in water, for saccharides anchored to essentially planar membranes at fixed separations, and for saccharides anchored to apposing fluctuating membranes. Our simulations of two saccharides in water indicate that the saccharides engage in weak interactions to form dimers. We find that the binding occurs in a continuum of bound states instead of a certain number of well-defined bound structures, which we term as "diffuse binding". The binding of saccharides anchored to essentially planar membranes strongly depends on separation of the membranes, which is fixed in our simulation system. We show that the binding constants for trans-interactions of two lipid-anchored saccharides monotonically decrease with increasing separation. Saccharides anchored to the same membrane leaflet engage in cis-interactions with binding constants comparable to the trans-binding constants at the smallest membrane separations. The interplay of cis- and trans-binding can be investigated in simulation systems with many lipid-anchored saccharides. For Lac2, our simulation results indicate a positive cooperativity of trans- and cis-binding. In this cooperative binding the trans-binding constant is enhanced by the cis-interactions. For LeX, in contrast, we observe no cooperativity between trans- and cis-binding. In addition, we determine the forces generated by trans-binding of lipid-anchored saccharides in planar membranes from the binding-induced deviations of the lipid-anchors. We find that the forces acting on trans-bound saccharides increase with increasing membrane separation to values of the order of 10 pN. The binding of saccharides anchored to the fluctuating membranes results from an interplay between the binding properties of the lipid-anchored saccharides and membrane fluctuations. Our simulations, which have the same average separation of the membranes as obtained from the neutron scattering experiments, yield a binding constant larger than in planar membranes with the same separation. This result demonstrates that membrane fluctuations play an important role at average membrane separations which are seemingly too large for effective binding. We further show that the probability distribution of the local separation can be well approximated by a Gaussian distribution. We calculate the relative membrane roughness and show that our results are in good agreement with the roughness values reported from the neutron scattering experiments.}, language = {en} } @phdthesis{Haase2019, author = {Haase, Nadin}, title = {The nascent peptide chain in the ribosomal exit tunnel}, school = {Universit{\"a}t Potsdam}, pages = {105}, year = {2019}, language = {en} } @phdthesis{Hintsche2018, author = {Hintsche, Marius}, title = {Locomotion of a bacterium with a polar bundle of flagella}, doi = {10.25932/publishup-42697}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-426972}, school = {Universit{\"a}t Potsdam}, pages = {xi, 108}, year = {2018}, abstract = {Movement and navigation are essential for many organisms during some parts of their lives. This is also true for bacteria, which can move along surfaces and swim though liquid environments. They are able to sense their environment, and move towards environmental cues in a directed fashion. These abilities enable microbial lifecyles in biofilms, improved food uptake, host infection, and many more. In this thesis we study aspects of the swimming movement - or motility - of the soil bacterium (P. putida). Like most bacteria, P. putida swims by rotating its helical flagella, but their arrangement differs from the main model organism in bacterial motility research: (E. coli). P. putida is known for its intriguing motility strategy, where fast and slow episodes can occur after each other. Up until now, it was not known how these two speeds can be produced, and what advantages they might confer to this bacterium. Normally the flagella, the main component of thrust generation in bacteria, are not observable by ordinary light microscopy. In order to elucidate this behavior, we therefore used a fluorescent staining technique on a mutant strain of this species to specifically label the flagella, while leaving the cell body only faintly stained. This allowed us to image the flagella of the swimming bacteria with high spacial and temporal resolution with a customized high speed fluorescence microscopy setup. Our observations show that P. putida can swim in three different modes. First, It can swim with the flagella pushing the cell body, which is the main mode of swimming motility previously known from other bacteria. Second, it can swim with the flagella pulling the cell body, which was thought not to be possible in situations with multiple flagella. Lastly, it can wrap its flagellar bundle around the cell body, which results in a speed wich is slower by a factor of two. In this mode, the flagella are in a different physical conformation with a larger radius so the cell body can fit inside. These three swimming modes explain the previous observation of two speeds, as well as the non strict alternation of the different speeds. Because most bacterial swimming in nature does not occur in smoothly walled glass enclosures under a microscope, we used an artificial, microfluidic, structured system of obstacles to study the motion of our model organism in a structured environment. Bacteria were observed in microchannels with cylindrical obstacles of different sizes and with different distances with video microscopy and cell tracking. We analyzed turning angles, run times, and run length, which we compared to a minimal model for movement in structured geometries. Our findings show that hydrodynamic interactions with the walls lead to a guiding of the bacteria along obstacles. When comparing the observed behavior with the statics of a particle that is deflected with every obstacle contact, we find that cells run for longer distances than that model. Navigation in chemical gradients is one of the main applications of motility in bacteria. We studied the swimming response of P. putida cells to chemical stimuli (chemotaxis) of the common food preservative sodium benzoate. Using a microfluidic gradient generation device, we created gradients of varying strength, and observed the motion of cells with a video microscope and subsequent cell tracking. Analysis of different motility parameters like run lengths and times, shows that P. putida employs the classical chemotaxis strategy of E. coli: runs up the gradient are biased to be longer than those down the gradient. Using the two different run speeds we observed due to the different swimming modes, we classify runs into `fast' and `slow' modes with a Gaussian mixture model (GMM). We find no evidence that P. putida's uses its swimming modes to perform chemotaxis. In most studies of bacterial motility, cell tracking is used to gather trajectories of individual swimming cells. These trajectories then have to be decomposed into run sections and tumble sections. Several algorithms have been developed to this end, but most require manual tuning of a number of parameters, or extensive measurements with chemotaxis mutant strains. Together with our collaborators, we developed a novel motility analysis scheme, based on generalized Kramers-Moyal-coefficients. From the underlying stochastic model, many parameters like run length etc., can be inferred by an optimization procedure without the need for explicit run and tumble classification. The method can, however, be extended to a fully fledged tumble classifier. Using this method, we analyze E. coli chemotaxis measurements in an aspartate analog, and find evidence for a chemotactic bias in the tumble angles.}, language = {en} } @phdthesis{Jechow2009, author = {Jechow, Andreas}, title = {Tailoring the emission of stripe-array diode lasers with external cavities to enable nonlinear frequency conversion}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-031-1}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-39653}, school = {Universit{\"a}t Potsdam}, pages = {ii, 139}, year = {2009}, abstract = {A huge number of applications require coherent radiation in the visible spectral range. Since diode lasers are very compact and efficient light sources, there exists a great interest to cover these applications with diode laser emission. Despite modern band gap engineering not all wavelengths can be accessed with diode laser radiation. Especially in the visible spectral range between 480 nm and 630 nm no emission from diode lasers is available, yet. Nonlinear frequency conversion of near-infrared radiation is a common way to generate coherent emission in the visible spectral range. However, radiation with extraordinary spatial temporal and spectral quality is required to pump frequency conversion. Broad area (BA) diode lasers are reliable high power light sources in the near-infrared spectral range. They belong to the most efficient coherent light sources with electro-optical efficiencies of more than 70\%. Standard BA lasers are not suitable as pump lasers for frequency conversion because of their poor beam quality and spectral properties. For this purpose, tapered lasers and diode lasers with Bragg gratings are utilized. However, these new diode laser structures demand for additional manufacturing and assembling steps that makes their processing challenging and expensive. An alternative to BA diode lasers is the stripe-array architecture. The emitting area of a stripe-array diode laser is comparable to a BA device and the manufacturing of these arrays requires only one additional process step. Such a stripe-array consists of several narrow striped emitters realized with close proximity. Due to the overlap of the fields of neighboring emitters or the presence of leaky waves, a strong coupling between the emitters exists. As a consequence, the emission of such an array is characterized by a so called supermode. However, for the free running stripe-array mode competition between several supermodes occurs because of the lack of wavelength stabilization. This leads to power fluctuations, spectral instabilities and poor beam quality. Thus, it was necessary to study the emission properties of those stripe-arrays to find new concepts to realize an external synchronization of the emitters. The aim was to achieve stable longitudinal and transversal single mode operation with high output powers giving a brightness sufficient for efficient nonlinear frequency conversion. For this purpose a comprehensive analysis of the stripe-array devices was done here. The physical effects that are the origin of the emission characteristics were investigated theoretically and experimentally. In this context numerical models could be verified and extended. A good agreement between simulation and experiment was observed. One way to stabilize a specific supermode of an array is to operate it in an external cavity. Based on mathematical simulations and experimental work, it was possible to design novel external cavities to select a specific supermode and stabilize all emitters of the array at the same wavelength. This resulted in stable emission with 1 W output power, a narrow bandwidth in the range of 2 MHz and a very good beam quality with M²<1.5. This is a new level of brightness and brilliance compared to other BA and stripe-array diode laser systems. The emission from this external cavity diode laser (ECDL) satisfied the requirements for nonlinear frequency conversion. Furthermore, a huge improvement to existing concepts was made. In the next step newly available periodically poled crystals were used for second harmonic generation (SHG) in single pass setups. With the stripe-array ECDL as pump source, more than 140 mW of coherent radiation at 488 nm could be generated with a very high opto-optical conversion efficiency. The generated blue light had very good transversal and longitudinal properties and could be used to generate biphotons by parametric down-conversion. This was feasible because of the improvement made with the infrared stripe-array diode lasers due to the development of new physical concepts.}, language = {en} } @phdthesis{Quade2018, author = {Quade, Markus}, title = {Symbolic regression for identification, prediction, and control of dynamical systems}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-419790}, school = {Universit{\"a}t Potsdam}, pages = {xiii, 134}, year = {2018}, abstract = {In the present work, we use symbolic regression for automated modeling of dynamical systems. Symbolic regression is a powerful and general method suitable for data-driven identification of mathematical expressions. In particular, the structure and parameters of those expressions are identified simultaneously. We consider two main variants of symbolic regression: sparse regression-based and genetic programming-based symbolic regression. Both are applied to identification, prediction and control of dynamical systems. We introduce a new methodology for the data-driven identification of nonlinear dynamics for systems undergoing abrupt changes. Building on a sparse regression algorithm derived earlier, the model after the change is defined as a minimum update with respect to a reference model of the system identified prior to the change. The technique is successfully exemplified on the chaotic Lorenz system and the van der Pol oscillator. Issues such as computational complexity, robustness against noise and requirements with respect to data volume are investigated. We show how symbolic regression can be used for time series prediction. Again, issues such as robustness against noise and convergence rate are investigated us- ing the harmonic oscillator as a toy problem. In combination with embedding, we demonstrate the prediction of a propagating front in coupled FitzHugh-Nagumo oscillators. Additionally, we show how we can enhance numerical weather predictions to commercially forecast power production of green energy power plants. We employ symbolic regression for synchronization control in coupled van der Pol oscillators. Different coupling topologies are investigated. We address issues such as plausibility and stability of the control laws found. The toolkit has been made open source and is used in turbulence control applications. Genetic programming based symbolic regression is very versatile and can be adapted to many optimization problems. The heuristic-based algorithm allows for cost efficient optimization of complex tasks. We emphasize the ability of symbolic regression to yield white-box models. In contrast to black-box models, such models are accessible and interpretable which allows the usage of established tool chains.}, language = {en} } @phdthesis{Wagle2019, author = {Wagle, Swapnil}, title = {Multi scale modeling of SNARE-mimetic peptides for their applications in membrane fusion}, pages = {105}, year = {2019}, language = {en} } @phdthesis{Ahnert2010, author = {Ahnert, Karsten}, title = {Compactons in strongly nonlinear lattices}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-48539}, school = {Universit{\"a}t Potsdam}, year = {2010}, abstract = {In the present work, we study wave phenomena in strongly nonlinear lattices. Such lattices are characterized by the absence of classical linear waves. We demonstrate that compactons - strongly localized solitary waves with tails decaying faster than exponential - exist and that they play a major role in the dynamics of the system under consideration. We investigate compactons in different physical setups. One part deals with lattices of dispersively coupled limit cycle oscillators which find various applications in natural sciences such as Josephson junction arrays or coupled Ginzburg-Landau equations. Another part deals with Hamiltonian lattices. Here, a prominent example in which compactons can be found is the granular chain. In the third part, we study systems which are related to the discrete nonlinear Schr{\"o}dinger equation describing, for example, coupled optical wave-guides or the dynamics of Bose-Einstein condensates in optical lattices. Our investigations are based on a numerical method to solve the traveling wave equation. This results in a quasi-exact solution (up to numerical errors) which is the compacton. Another ansatz which is employed throughout this work is the quasi-continuous approximation where the lattice is described by a continuous medium. Here, compactons are found analytically, but they are defined on a truly compact support. Remarkably, both ways give similar qualitative and quantitative results. Additionally, we study the dynamical properties of compactons by means of numerical simulation of the lattice equations. Especially, we concentrate on their emergence from physically realizable initial conditions as well as on their stability due to collisions. We show that the collisions are not exactly elastic but that a small part of the energy remains at the location of the collision. In finite lattices, this remaining part will then trigger a multiple scattering process resulting in a chaotic state.}, language = {en} } @phdthesis{Goldobin2007, author = {Goldobin, Denis S.}, title = {Coherence and synchronization of noisy-driven oscillators}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-15047}, school = {Universit{\"a}t Potsdam}, year = {2007}, abstract = {In the present dissertation paper we study problems related to synchronization phenomena in the presence of noise which unavoidably appears in real systems. One part of the work is aimed at investigation of utilizing delayed feedback to control properties of diverse chaotic dynamic and stochastic systems, with emphasis on the ones determining predisposition to synchronization. Other part deals with a constructive role of noise, i.e. its ability to synchronize identical self-sustained oscillators. First, we demonstrate that the coherence of a noisy or chaotic self-sustained oscillator can be efficiently controlled by the delayed feedback. We develop the analytical theory of this effect, considering noisy systems in the Gaussian approximation. Possible applications of the effect for the synchronization control are also discussed. Second, we consider synchrony of limit cycle systems (in other words, self-sustained oscillators) driven by identical noise. For weak noise and smooth systems we proof the purely synchronizing effect of noise. For slightly different oscillators and/or slightly nonidentical driving, synchrony becomes imperfect, and this subject is also studied. Then, with numerics we show moderate noise to be able to lead to desynchronization of some systems under certain circumstances. For neurons the last effect means "antireliability" (the "reliability" property of neurons is treated to be important from the viewpoint of information transmission functions), and we extend our investigation to neural oscillators which are not always limit cycle ones. Third, we develop a weakly nonlinear theory of the Kuramoto transition (a transition to collective synchrony) in an ensemble of globally coupled oscillators in presence of additional time-delayed coupling terms. We show that a linear delayed feedback not only controls the transition point, but effectively changes the nonlinear terms near the transition. A purely nonlinear delayed coupling does not affect the transition point, but can reduce or enhance the amplitude of collective oscillations.}, language = {en} } @phdthesis{Vlasov2015, author = {Vlasov, Vladimir}, title = {Synchronization of oscillatory networks in terms of global variables}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-78182}, school = {Universit{\"a}t Potsdam}, pages = {82}, year = {2015}, abstract = {Synchronization of large ensembles of oscillators is an omnipresent phenomenon observed in different fields of science like physics, engineering, life sciences, etc. The most simple setup is that of globally coupled phase oscillators, where all the oscillators contribute to a global field which acts on all oscillators. This formulation of the problem was pioneered by Winfree and Kuramoto. Such a setup gives a possibility for the analysis of these systems in terms of global variables. In this work we describe nontrivial collective dynamics in oscillator populations coupled via mean fields in terms of global variables. We consider problems which cannot be directly reduced to standard Kuramoto and Winfree models. In the first part of the thesis we adopt a method introduced by Watanabe and Strogatz. The main idea is that the system of identical oscillators of particular type can be described by a low-dimensional system of global equations. This approach enables us to perform a complete analytical analysis for a special but vast set of initial conditions. Furthermore, we show how the approach can be expanded for some nonidentical systems. We apply the Watanabe-Strogatz approach to arrays of Josephson junctions and systems of identical phase oscillators with leader-type coupling. In the next parts of the thesis we consider the self-consistent mean-field theory method that can be applied to general nonidentical globally coupled systems of oscillators both with or without noise. For considered systems a regime, where the global field rotates uniformly, is the most important one. With the help of this approach such solutions of the self-consistency equation for an arbitrary distribution of frequencies and coupling parameters can be found analytically in the parametric form, both for noise-free and noisy cases. We apply this method to deterministic Kuramoto-type model with generic coupling and an ensemble of spatially distributed oscillators with leader-type coupling. Furthermore, with the proposed self-consistent approach we fully characterize rotating wave solutions of noisy Kuramoto-type model with generic coupling and an ensemble of noisy oscillators with bi-harmonic coupling. Whenever possible, a complete analysis of global dynamics is performed and compared with direct numerical simulations of large populations.}, language = {en} } @phdthesis{Yeldesbay2014, author = {Yeldesbay, Azamat}, title = {Complex regimes of synchronization}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-73348}, school = {Universit{\"a}t Potsdam}, pages = {ii, 60}, year = {2014}, abstract = {Synchronization is a fundamental phenomenon in nature. It can be considered as a general property of self-sustained oscillators to adjust their rhythm in the presence of an interaction. In this work we investigate complex regimes of synchronization phenomena by means of theoretical analysis, numerical modeling, as well as practical analysis of experimental data. As a subject of our investigation we consider chimera state, where due to spontaneous symmetry-breaking of an initially homogeneous oscillators lattice split the system into two parts with different dynamics. Chimera state as a new synchronization phenomenon was first found in non-locally coupled oscillators system, and has attracted a lot of attention in the last decade. However, the recent studies indicate that this state is also possible in globally coupled systems. In the first part of this work, we show under which conditions the chimera-like state appears in a system of globally coupled identical oscillators with intrinsic delayed feedback. The results of the research explain how initially monostable oscillators became effectivly bistable in the presence of the coupling and create a mean field that sustain the coexistence of synchronized and desynchronized states. Also we discuss other examples, where chimera-like state appears due to frequency dependence of the phase shift in the bistable system. In the second part, we make further investigation of this topic by modeling influence of an external periodic force to an oscillator with intrinsic delayed feedback. We made stability analysis of the synchronized state and constructed Arnold tongues. The results explain formation of the chimera-like state and hysteric behavior of the synchronization area. Also, we consider two sets of parameters of the oscillator with symmetric and asymmetric Arnold tongues, that correspond to mono- and bi-stable regimes of the oscillator. In the third part, we demonstrate the results of the work, which was done in collaboration with our colleagues from Psychology Department of University of Potsdam. The project aimed to study the effect of the cardiac rhythm on human perception of time using synchronization analysis. From our part, we made a statistical analysis of the data obtained from the conducted experiment on free time interval reproduction task. We examined how ones heartbeat influences the time perception and searched for possible phase synchronization between heartbeat cycles and time reproduction responses. The findings support the prediction that cardiac cycles can serve as input signals, and is used for reproduction of time intervals in the range of several seconds.}, language = {en} } @phdthesis{Peter2019, author = {Peter, Franziska}, title = {Transition to synchrony in finite Kuramoto ensembles}, doi = {10.25932/publishup-42916}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-429168}, school = {Universit{\"a}t Potsdam}, pages = {vi, 93}, year = {2019}, abstract = {Synchronisation - die Ann{\"a}herung der Rhythmen gekoppelter selbst oszillierender Systeme - ist ein faszinierendes dynamisches Ph{\"a}nomen, das in vielen biologischen, sozialen und technischen Systemen auftritt. Die vorliegende Arbeit befasst sich mit Synchronisation in endlichen Ensembles schwach gekoppelter selbst-erhaltender Oszillatoren mit unterschiedlichen nat{\"u}rlichen Frequenzen. Das Standardmodell f{\"u}r dieses kollektive Ph{\"a}nomen ist das Kuramoto-Modell - unter anderem aufgrund seiner L{\"o}sbarkeit im thermodynamischen Limes unendlich vieler Oszillatoren. {\"A}hnlich einem thermodynamischen Phasen{\"u}bergang zeigt im Fall unendlich vieler Oszillatoren ein Ordnungsparameter den {\"U}bergang von Inkoh{\"a}renz zu einem partiell synchronen Zustand an, in dem ein Teil der Oszillatoren mit einer gemeinsamen Frequenz rotiert. Im endlichen Fall treten Fluktuationen auf. In dieser Arbeit betrachten wir den bisher wenig beachteten Fall von bis zu wenigen hundert Oszillatoren, unter denen vergleichbar starke Fluktuationen auftreten, bei denen aber ein Vergleich zu Frequenzverteilungen im unendlichen Fall m{\"o}glich ist. Zun{\"a}chst definieren wir einen alternativen Ordnungsparameter zur Feststellung einer kollektiven Mode im endlichen Kuramoto-Modell. Dann pr{\"u}fen wir die Abh{\"a}ngigkeit des Synchronisationsgrades und der mittleren Rotationsfrequenz der kollektiven Mode von Eigenschaften der nat{\"u}rlichen Frequenzverteilung f{\"u}r verschiedene Kopplungsst{\"a}rken. Wir stellen dabei zun{\"a}chst numerisch fest, dass der Synchronisationsgrad stark von der Form der Verteilung (gemessen durch die Kurtosis) und die Rotationsfrequenz der kollektiven Mode stark von der Asymmetrie der Verteilung (gemessen durch die Schiefe) der nat{\"u}rlichen Frequenzen abh{\"a}ngt. Beides k{\"o}nnen wir im thermodynamischen Limes analytisch verifizieren. Mit diesen Ergebnissen k{\"o}nnen wir Erkenntnisse anderer Autoren besser verstehen und verallgemeinern. Etwas abseits des roten Fadens dieser Arbeit finden wir außerdem einen analytischen Ausdruck f{\"u}r die Volumenkontraktion im Phasenraum. Der zweite Teil der Arbeit konzentriert sich auf den ordnenden Effekt von Fluktuationen, die durch die Endlichkeit des Systems zustande kommen. Im unendlichen Modell sind die Oszillatoren eindeutig in koh{\"a}rent und inkoh{\"a}rent und damit in geordnet und ungeordnet getrennt. Im endlichen Fall k{\"o}nnen die auftretenden Fluktuationen zus{\"a}tzliche Ordnung unter den asynchronen Oszillatoren erzeugen. Das grundlegende Prinzip, die rauschinduzierte Synchronisation, ist aus einer Reihe von Publikationen bekannt. Unter den gekoppelten Oszillatoren n{\"a}hern sich die Phasen aufgrund der Fluktuationen des Ordnungsparameters an, wie wir einerseits direkt numerisch zeigen und andererseits mit einem Synchronisationsmaß aus der gerichteten Statistik zwischen Paaren passiver Oszillatoren nachweisen. Wir bestimmen die Abh{\"a}ngigkeit dieses Synchronisationsmaßes vom Verh{\"a}ltnis von paarweiser nat{\"u}rlicher Frequenzdifferenz zur Varianz der Fluktuationen. Dabei finden wir eine gute {\"U}bereinstimmung mit einem einfachen analytischen Modell, in welchem wir die deterministischen Fluktuationen des Ordnungsparameters durch weißes Rauschen ersetzen.}, language = {en} } @phdthesis{Mulansky2012, author = {Mulansky, Mario}, title = {Chaotic diffusion in nonlinear Hamiltonian systems}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-63180}, school = {Universit{\"a}t Potsdam}, year = {2012}, abstract = {This work investigates diffusion in nonlinear Hamiltonian systems. The diffusion, more precisely subdiffusion, in such systems is induced by the intrinsic chaotic behavior of trajectories and thus is called chaotic diffusion''. Its properties are studied on the example of one- or two-dimensional lattices of harmonic or nonlinear oscillators with nearest neighbor couplings. The fundamental observation is the spreading of energy for localized initial conditions. Methods of quantifying this spreading behavior are presented, including a new quantity called excitation time. This new quantity allows for a more precise analysis of the spreading than traditional methods. Furthermore, the nonlinear diffusion equation is introduced as a phenomenologic description of the spreading process and a number of predictions on the density dependence of the spreading are drawn from this equation. Two mathematical techniques for analyzing nonlinear Hamiltonian systems are introduced. The first one is based on a scaling analysis of the Hamiltonian equations and the results are related to similar scaling properties of the NDE. From this relation, exact spreading predictions are deduced. Secondly, the microscopic dynamics at the edge of spreading states are thoroughly analyzed, which again suggests a scaling behavior that can be related to the NDE. Such a microscopic treatment of chaotically spreading states in nonlinear Hamiltonian systems has not been done before and the results present a new technique of connecting microscopic dynamics with macroscopic descriptions like the nonlinear diffusion equation. All theoretical results are supported by heavy numerical simulations, partly obtained on one of Europe's fastest supercomputers located in Bologna, Italy. In the end, the highly interesting case of harmonic oscillators with random frequencies and nonlinear coupling is studied, which resembles to some extent the famous Discrete Anderson Nonlinear Schroedinger Equation. For this model, a deviation from the widely believed power-law spreading is observed in numerical experiments. Some ideas on a theoretical explanation for this deviation are presented, but a conclusive theory could not be found due to the complicated phase space structure in this case. Nevertheless, it is hoped that the techniques and results presented in this work will help to eventually understand this controversely discussed case as well.}, language = {en} } @phdthesis{Jaster2003, author = {Jaster, Nicole}, title = {Ratchet models of molecular motors}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0000867}, school = {Universit{\"a}t Potsdam}, year = {2003}, abstract = {Transportvorg{\"a}nge in und von Zellen sind von herausragender Bedeutung f{\"u}r das {\"U}berleben des Organismus. Muskeln m{\"u}ssen sich kontrahieren k{\"o}nnen, Chromosomen w{\"a}hrend der Mitose an entgegengesetzte Enden der Zelle bewegt und Organellen, das sind von Membranen umschlossene Kompartimente, entlang molekularer Schienen transportiert werden. Molekulare Motoren sind Proteine, deren Hauptaufgabe es ist, andere Molek{\"u}le zu bewegen. Dazu wandeln sie die bei der ATP-Hydrolyse freiwerdende chemische Energie in mechanische Arbeit um. Die Motoren des Zellskeletts geh{\"o}ren zu den drei Superfamilien Myosin, Kinesin und Dynein. Ihre Schienen sind Filamente des Zellskeletts, Actin und die Microtubuli. In dieser Arbeit werden stochastische Modelle untersucht, welche dazu dienen, die Fortbewegung dieser linearen molekularen Motoren zu beschreiben. Die Skala, auf der wir die Bewegung betrachten, reicht von einzelnen Schritten eines Motorproteins bis in den Bereich der gerichteten Bewegung entlang eines Filaments. Ein Einzelschritt {\"u}berbr{\"u}ckt je nach Protein etwa 10 nm und wird in ungef{\"a}hr 10 ms zur{\"u}ckgelegt. Unsere Modelle umfassen M Zust{\"a}nde oder Konformationen, die der Motor annehmen kann, w{\"a}hrend er sich entlang einer eindimensionalen Schiene bewegt. An K Orten dieser Schiene sind {\"U}berg{\"a}nge zwischen den Zust{\"a}nden m{\"o}glich. Die Geschwindigkeit des Proteins l{\"a}sst sich in Abh{\"a}ngigkeit von den vertikalen {\"U}bergangsraten zwischen den einzelnen Zust{\"a}nden analytisch bestimmen. Wir berechnen diese Geschwindigkeit f{\"u}r Systeme mit bis zu vier Zust{\"a}nden und Orten und k{\"o}nnen weiterhin eine Reihe von Regeln ableiten, die uns einsch{\"a}tzen helfen, wie sich ein beliebiges vorgegebenes System verhalten wird. Dar{\"u}ber hinaus betrachten wir entkoppelte Subsysteme, also einen oder mehrere Zust{\"a}nde, die keine Verbindung zum {\"u}brigen System haben. Mit einer bestimmten Wahrscheinlichkeit kann ein Motor einen Zyklus von Konformationen durchlaufen, mit einer anderen Wahrscheinlichkeit einen davon unabh{\"a}ngigen anderen. Aktive Elemente werden in realen Transportvorg{\"a}ngen durch Motorproteine nicht auf die {\"U}berg{\"a}nge zwischen den Zust{\"a}nden beschr{\"a}nkt sein. In verzerrten Netzwerken oder ausgehend von der diskreten Mastergleichung des Systems k{\"o}nnen auch horizontale Raten spezifiziert werden und m{\"u}ssen weiterhin nicht mehr die Bedingungen der detaillierten Balance erf{\"u}llen. Damit ergeben sich eindeutige, komplette Pfade durch das jeweilige Netzwerk und Regeln f{\"u}r die Abh{\"a}ngigkeit des Gesamtstroms von allen Raten des Systems. Außerdem betrachten wir die zeitliche Entwicklung f{\"u}r vorgegebene Anfangsverteilungen. Bei Enzymreaktionen gibt es die Idee des Hauptpfades, dem diese bevorzugt folgen. Wir bestimmen optimale Pfade und den maximalen Fluss durch vorgegebene Netzwerke. Um dar{\"u}ber hinaus die Geschwindigkeit des Motors in Abh{\"a}ngigkeit von seinem Treibstoff ATP angeben zu k{\"o}nnen, betrachten wir m{\"o}gliche Reaktionskinetiken, die den Zusammenhang zwischen den unbalancierten {\"U}bergangsraten und der ATP-Konzentration bestimmen. Je nach Typ der Reaktionskinetik und Anzahl unbalancierter Raten ergeben sich qualitativ unterschiedliche Verl{\"a}ufe der Geschwindigkeitskurven in Abh{\"a}ngigkeit von der ATP-Konzentration. Die molekularen Wechselwirkungspotentiale, die der Motor entlang seiner Schiene erf{\"a}hrt, sind unbekannt.Wir vergleichen unterschiedliche einfache Potentiale und die Auswirkungen auf die Transportkoeffizienten, die sich durch die Lokalisation der vertikalen {\"U}berg{\"a}nge im Netzwerkmodell im Vergleich zu anderen Ans{\"a}tzen ergeben.}, language = {en} } @phdthesis{Klumpp2003, author = {Klumpp, Stefan}, title = {Movements of molecular motors : diffusion and directed walks}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0000806}, school = {Universit{\"a}t Potsdam}, year = {2003}, abstract = {Bewegungen von prozessiven molekularen Motoren des Zytoskeletts sind durch ein Wechselspiel von gerichteter Bewegung entlang von Filamenten und Diffusion in der umgebenden L{\"o}sung gekennzeichnet. Diese eigent{\"u}mlichen Bewegungen werden in der vorliegenden Arbeit untersucht, indem sie als Random Walks auf einem Gitter modelliert werden. Ein weiterer Gegenstand der Untersuchung sind Effekte von Wechselwirkungen zwischen den Motoren auf diese Bewegungen. Im einzelnen werden vier Transportph{\"a}nomene untersucht: (i) Random Walks von einzelnen Motoren in Kompartimenten verschiedener Geometrien, (ii) station{\"a}re Konzentrationsprofile, die sich in geschlossenen Kompartimenten infolge dieser Bewegungen einstellen, (iii) randinduzierte Phasen{\"u}berg{\"a}nge in offenen r{\"o}hrenartigen Kompartimenten, die an Motorenreservoirs gekoppelt sind, und (iv) der Einfluß von kooperativen Effekten bei der Motor-Filament-Bindung auf die Bewegung. Alle diese Ph{\"a}nomene sind experimentell zug{\"a}nglich, und m{\"o}gliche experimentelle Realisierungen werden diskutiert.}, language = {en} } @phdthesis{Topaj2001, author = {Topaj, Dmitri}, title = {Synchronization transitions in complex systems}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0000367}, school = {Universit{\"a}t Potsdam}, year = {2001}, abstract = {Gegenstand dieser Arbeit ist die Untersuchung generischer Synchronisierungsph{\"a}nomene in interagierenden komplexen Systemen. Diese Ph{\"a}nomene werden u.a. in gekoppelten deterministischen chaotischen Systemen beobachtet. Bei sehr schwachen Interaktionen zwischen individuellen Systemen kann ein {\"U}bergang zum schwach koh{\"a}renten Verhalten der Systeme stattfinden. In gekoppelten zeitkontinuierlichen chaotischen Systemen manifestiert sich dieser {\"U}bergang durch den Effekt der Phasensynchronisierung, in gekoppelten chaotischen zeitdiskreten Systemen durch den Effekt eines nichtverschwindenden makroskopischen Feldes. Der {\"U}bergang zur Koh{\"a}renz in einer Kette lokal gekoppelter Oszillatoren, beschrieben durch Phasengleichungen, wird im Bezug auf die Symmetrien des Systems untersucht. Es wird gezeigt, daß die durch die Symmetrien verursachte Reversibilit{\"a}t des Systems nichttriviale topologische Eigenschaften der Trajektorien bedingt, so daß das als dissipativ konstruierte System in einem ganzen Parameterbereich quasi-Hamiltonische Z{\"u}ge aufweist, d.h. das Phasenvolumen ist im Schnitt erhalten, und die Lyapunov-Exponenten sind paarweise symmetrisch. Der {\"U}bergang zur Koh{\"a}renz in einem Ensemble global gekoppelter chaotischer Abbildungen wird durch den Verlust der Stabilit{\"a}t des entkoppelten Zustandes beschrieben. Die entwickelte Methode besteht darin, die Selbstkonsistenz des makroskopischen Feldes aufzuheben, und das Ensemble in Analogie mit einem Verst{\"a}rkerschaltkreis mit R{\"u}ckkopplung durch eine komplexe lineare {\"U}bertragungssfunktion zu charakterisieren. Diese Theorie wird anschließend f{\"u}r einige theoretisch interessanten F{\"a}lle verallgemeinert.}, language = {en} } @phdthesis{Ahlers2001, author = {Ahlers, Volker}, title = {Scaling and synchronization in deterministic and stochastic nonlinear dynamical systems}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0000320}, school = {Universit{\"a}t Potsdam}, year = {2001}, abstract = {Gegenstand dieser Arbeit ist die Untersuchung universeller Skalengesetze, die in gekoppelten chaotischen Systemen beobachtet werden. Ergebnisse werden erzielt durch das Ersetzen der chaotischen Fluktuationen in der St{\"o}rungsdynamik durch stochastische Prozesse. Zun{\"a}chst wird ein zeitkontinuierliches stochastisches Modell f{\"u}rschwach gekoppelte chaotische Systeme eingef{\"u}hrt, um die Skalierung der Lyapunov-Exponenten mit der Kopplungsst{\"a}rke (coupling sensitivity of chaos) zu untersuchen. Mit Hilfe der Fokker-Planck-Gleichung werden Skalengesetze hergeleitet, die von Ergebnissen numerischer Simulationen best{\"a}tigt werden. Anschließend wird der neuartige Effekt der vermiedenen Kreuzung von Lyapunov-Exponenten schwach gekoppelter ungeordneter chaotischer Systeme beschrieben, der qualitativ der Abstoßung zwischen Energieniveaus in Quantensystemen {\"a}hnelt. Unter Benutzung der f{\"u}r die coupling sensitivity of chaos gewonnenen Skalengesetze wird ein asymptotischer Ausdruck f{\"u}r die Verteilungsfunktion kleiner Abst{\"a}nde zwischen Lyapunov-Exponenten hergeleitet und mit Ergebnissen numerischer Simulationen verglichen. Schließlich wird gezeigt, dass der Synchronisations{\"u}bergang in starkgekoppelten r{\"a}umlich ausgedehnten chaotischen Systemen einem kontinuierlichen Phasen{\"u}bergang entspricht, mit der Kopplungsst{\"a}rke und dem Synchronisationsfehler als Kontroll- beziehungsweise Ordnungsparameter. Unter Benutzung von Ergebnissen numerischer Simulationen sowie theoretischen {\"U}berlegungen anhand einer partiellen Differentialgleichung mit multiplikativem Rauschen werden die Universalit{\"a}tsklassen der zwei beobachteten {\"U}bergangsarten bestimmt (Kardar-Parisi-Zhang-Gleichung mit S{\"a}ttigungsterm, gerichtete Perkolation).}, language = {en} } @phdthesis{Zheng2021, author = {Zheng, Chunming}, title = {Bursting and synchronization in noisy oscillatory systems}, doi = {10.25932/publishup-50019}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-500199}, school = {Universit{\"a}t Potsdam}, pages = {iv, 87}, year = {2021}, abstract = {Noise is ubiquitous in nature and usually results in rich dynamics in stochastic systems such as oscillatory systems, which exist in such various fields as physics, biology and complex networks. The correlation and synchronization of two or many oscillators are widely studied topics in recent years. In this thesis, we mainly investigate two problems, i.e., the stochastic bursting phenomenon in noisy excitable systems and synchronization in a three-dimensional Kuramoto model with noise. Stochastic bursting here refers to a sequence of coherent spike train, where each spike has random number of followers due to the combined effects of both time delay and noise. Synchronization, as a universal phenomenon in nonlinear dynamical systems, is well illustrated in the Kuramoto model, a prominent model in the description of collective motion. In the first part of this thesis, an idealized point process, valid if the characteristic timescales in the problem are well separated, is used to describe statistical properties such as the power spectral density and the interspike interval distribution. We show how the main parameters of the point process, the spontaneous excitation rate, and the probability to induce a spike during the delay action can be calculated from the solutions of a stationary and a forced Fokker-Planck equation. We extend it to the delay-coupled case and derive analytically the statistics of the spikes in each neuron, the pairwise correlations between any two neurons, and the spectrum of the total output from the network. In the second part, we investigate the three-dimensional noisy Kuramoto model, which can be used to describe the synchronization in a swarming model with helical trajectory. In the case without natural frequency, the Kuramoto model can be connected with the Vicsek model, which is widely studied in collective motion and swarming of active matter. We analyze the linear stability of the incoherent state and derive the critical coupling strength above which the incoherent state loses stability. In the limit of no natural frequency, an exact self-consistent equation of the mean field is derived and extended straightforward to any high-dimensional case.}, language = {en} } @phdthesis{Sposini2020, author = {Sposini, Vittoria}, title = {The random diffusivity approach for diffusion in heterogeneous systems}, doi = {10.25932/publishup-48780}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-487808}, school = {Universit{\"a}t Potsdam}, year = {2020}, abstract = {The two hallmark features of Brownian motion are the linear growth < x2(t)> = 2Ddt of the mean squared displacement (MSD) with diffusion coefficient D in d spatial dimensions, and the Gaussian distribution of displacements. With the increasing complexity of the studied systems deviations from these two central properties have been unveiled over the years. Recently, a large variety of systems have been reported in which the MSD exhibits the linear growth in time of Brownian (Fickian) transport, however, the distribution of displacements is pronouncedly non-Gaussian (Brownian yet non-Gaussian, BNG). A similar behaviour is also observed for viscoelastic-type motion where an anomalous trend of the MSD, i.e., ~ ta, is combined with a priori unexpected non-Gaussian distributions (anomalous yet non-Gaussian, ANG). This kind of behaviour observed in BNG and ANG diffusions has been related to the presence of heterogeneities in the systems and a common approach has been established to address it, that is, the random diffusivity approach. This dissertation explores extensively the field of random diffusivity models. Starting from a chronological description of all the main approaches used as an attempt of describing BNG and ANG diffusion, different mathematical methodologies are defined for the resolution and study of these models. The processes that are reported in this work can be classified in three subcategories, i) randomly-scaled Gaussian processes, ii) superstatistical models and iii) diffusing diffusivity models, all belonging to the more general class of random diffusivity models. Eventually, the study focuses more on BNG diffusion, which is by now well-established and relatively well-understood. Nevertheless, many examples are discussed for the description of ANG diffusion, in order to highlight the possible scenarios which are known so far for the study of this class of processes. The second part of the dissertation deals with the statistical analysis of random diffusivity processes. A general description based on the concept of moment-generating function is initially provided to obtain standard statistical properties of the models. Then, the discussion moves to the study of the power spectral analysis and the first passage statistics for some particular random diffusivity models. A comparison between the results coming from the random diffusivity approach and the ones for standard Brownian motion is discussed. In this way, a deeper physical understanding of the systems described by random diffusivity models is also outlined. To conclude, a discussion based on the possible origins of the heterogeneity is sketched, with the main goal of inferring which kind of systems can actually be described by the random diffusivity approach.}, language = {en} } @phdthesis{Gengel2021, author = {Gengel, Erik}, title = {Direct and inverse problems of network analysis}, doi = {10.25932/publishup-51236}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-512367}, school = {Universit{\"a}t Potsdam}, pages = {VIII, 102}, year = {2021}, abstract = {Selfsustained oscillations are some of the most commonly observed phenomena in biological systems. They emanate from non-linear systems in a heterogeneous environment and can be described by the theory of dynamical systems. Part of this theory considers reduced models of the oscillator dynamics by means of amplitudes and a phase variable. Such variables are highly attractive for theoretical and experimental studies. Theoretically these variables correspond to an integrable linearization of the generally non-linear system. Experimentally, there exist well established approaches to extract phases from oscillator signals. Notably, one can define phase models also for networks of oscillators. One highly active field examines effects of non-local coupling among oscillators, which is thought to play a key role in networks with strong coupling. The dissertation introduces and expands the knowledge about high-order phase coupling in networks of oscillators. Mathematical calculations consider the Stuart-Landau oscillator. A novel phase estimation scheme for direct observations of an oscillator dynamics is introduced based on numerics. A numerical study of high-order phase coupling applies a Fourier fit for the Stuart-Landau and for the van-der-Pol oscillator. The numerical approach is finally tested on observation-based phase estimates of the Morris-Lecar neuron. A popular approach for the construction of phases from signals is based on phase demodulation by means of the Hilbert transform. Generally, observations of oscillations contain a small and generic variation of their amplitude. The work presents a way to quantify how much the variations of signal amplitude spoil a phase demodulation procedure. For the ideal case of phase modulated signals, amplitude modulations vanish. However, the Hilbert transform produces artificial variations of the reconstructed amplitude even in this case. The work proposes a novel procedure called Iterative Hilbert Transform Embedding to obtain an optimal demodulation of signals. The text presents numerous examples and tests of application for the method, covering multicomponent signals, observables of highly stable limit cycle oscillations and noisy phase dynamics. The numerical results are supported by a spectral theory of convergence for weak phase modulations.}, language = {en} } @phdthesis{Schroeder2024, author = {Schr{\"o}der, Jakob}, title = {Fundamentals of diffraction-based residual stress and texture analysis of laser powder bed fused Inconel 718}, doi = {10.25932/publishup-62197}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-621972}, school = {Universit{\"a}t Potsdam}, pages = {XVII, 135}, year = {2024}, abstract = {Additive manufacturing (AM) processes enable the production of metal structures with exceptional design freedom, of which laser powder bed fusion (PBF-LB) is one of the most common. In this process, a laser melts a bed of loose feedstock powder particles layer-by-layer to build a structure with the desired geometry. During fabrication, the repeated melting and rapid, directional solidification create large temperature gradients that generate large thermal stress. This thermal stress can itself lead to cracking or delamination during fabrication. More often, large residual stresses remain in the final part as a footprint of the thermal stress. This residual stress can cause premature distortion or even failure of the part in service. Hence, knowledge of the residual stress field is critical for both process optimization and structural integrity. Diffraction-based techniques allow the non-destructive characterization of the residual stress fields. However, such methods require a good knowledge of the material of interest, as certain assumptions must be made to accurately determine residual stress. First, the measured lattice plane spacings must be converted to lattice strains with the knowledge of a strain-free material state. Second, the measured lattice strains must be related to the macroscopic stress using Hooke's law, which requires knowledge of the stiffness of the material. Since most crystal structures exhibit anisotropic material behavior, the elastic behavior is specific to each lattice plane of the single crystal. Thus, the use of individual lattice planes in monochromatic diffraction residual stress analysis requires knowledge of the lattice plane-specific elastic properties. In addition, knowledge of the microstructure of the material is required for a reliable assessment of residual stress. This work presents a toolbox for reliable diffraction-based residual stress analysis. This is presented for a nickel-based superalloy produced by PBF-LB. First, this work reviews the existing literature in the field of residual stress analysis of laser-based AM using diffraction-based techniques. Second, the elastic and plastic anisotropy of the nickel-based superalloy Inconel 718 produced by PBF-LB is studied using in situ energy dispersive synchrotron X-ray and neutron diffraction techniques. These experiments are complemented by ex situ material characterization techniques. These methods establish the relationship between the microstructure and texture of the material and its elastic and plastic anisotropy. Finally, surface, sub-surface, and bulk residual stress are determined using a texture-based approach. Uncertainties of different methods for obtaining stress-free reference values are discussed. The tensile behavior in the as-built condition is shown to be controlled by texture and cellular sub-grain structure, while in the heat-treated condition the precipitation of strengthening phases and grain morphology dictate the behavior. In fact, the results of this thesis show that the diffraction elastic constants depend on the underlying microstructure, including texture and grain morphology. For columnar microstructures in both as-built and heat-treated conditions, the diffraction elastic constants are best described by the Reuss iso-stress model. Furthermore, the low accumulation of intergranular strains during deformation demonstrates the robustness of using the 311 reflection for the diffraction-based residual stress analysis with columnar textured microstructures. The differences between texture-based and quasi-isotropic approaches for the residual stress analysis are shown to be insignificant in the observed case. However, the analysis of the sub-surface residual stress distributions show, that different scanning strategies result in a change in the orientation of the residual stress tensor. Furthermore, the location of the critical sub-surface tensile residual stress is related to the surface roughness and the microstructure. Finally, recommendations are given for the diffraction-based determination and evaluation of residual stress in textured additively manufactured alloys.}, language = {en} } @phdthesis{Zillmer2003, author = {Zillmer, R{\"u}diger}, title = {Statistical properties and scaling of the Lyapunov exponents in stochastic systems}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0001147}, school = {Universit{\"a}t Potsdam}, year = {2003}, abstract = {Die vorliegende Arbeit umfaßt drei Abhandlungen, welche allgemein mit einer stochastischen Theorie f{\"u}r die Lyapunov-Exponenten befaßt sind. Mit Hilfe dieser Theorie werden universelle Skalengesetze untersucht, die in gekoppelten chaotischen und ungeordneten Systemen auftreten. Zun{\"a}chst werden zwei zeitkontinuierliche stochastische Modelle f{\"u}r schwach gekoppelte chaotische Systeme eingef{\"u}hrt, um die Skalierung der Lyapunov-Exponenten mit der Kopplungsst{\"a}rke ('coupling sensitivity of chaos') zu untersuchen. Mit Hilfe des Fokker-Planck-Formalismus werden Skalengesetze hergeleitet, die von Ergebnissen numerischer Simulationen best{\"a}tigt werden. Anschließend wird gezeigt, daß 'coupling sensitivity' im Fall gekoppelter ungeordneter Ketten auftritt, wobei der Effekt sich durch ein singul{\"a}res Anwachsen der Lokalisierungsl{\"a}nge {\"a}ußert. Numerische Ergebnisse f{\"u}r gekoppelte Anderson-Modelle werden bekr{\"a}ftigt durch analytische Resultate f{\"u}r gekoppelte raumkontinuierliche Schr{\"o}dinger-Gleichungen. Das resultierende Skalengesetz f{\"u}r die Lokalisierungsl{\"a}nge {\"a}hnelt der Skalierung der Lyapunov-Exponenten gekoppelter chaotischer Systeme. Schließlich wird die Statistik der exponentiellen Wachstumsrate des linearen Oszillators mit parametrischem Rauschen studiert. Es wird gezeigt, daß die Verteilung des zeitabh{\"a}ngigen Lyapunov-Exponenten von der Normalverteilung abweicht. Mittels der verallgemeinerten Lyapunov-Exponenten wird der Parameterbereich bestimmt, in welchem die Abweichungen von der Normalverteilung signifikant sind und Multiskalierung wesentlich wird.}, language = {en} } @phdthesis{SanchezBarriga2010, author = {S{\´a}nchez-Barriga, Jaime}, title = {A photoemission study of quasiparticle excitations, electron-correlation effects and magnetization dynamics in thin magnetic systems}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-48499}, school = {Universit{\"a}t Potsdam}, year = {2010}, abstract = {This thesis is focused on the electronic, spin-dependent and dynamical properties of thin magnetic systems. Photoemission-related techniques are combined with synchrotron radiation to study the spin-dependent properties of these systems in the energy and time domains. In the first part of this thesis, the strength of electron correlation effects in the spin-dependent electronic structure of ferromagnetic bcc Fe(110) and hcp Co(0001) is investigated by means of spin- and angle-resolved photoemission spectroscopy. The experimental results are compared to theoretical calculations within the three-body scattering approximation and within the dynamical mean-field theory, together with one-step model calculations of the photoemission process. From this comparison it is demonstrated that the present state of the art many-body calculations, although improving the description of correlation effects in Fe and Co, give too small mass renormalizations and scattering rates thus demanding more refined many-body theories including nonlocal fluctuations. In the second part, it is shown in detail monitoring by photoelectron spectroscopy how graphene can be grown by chemical vapour deposition on the transition-metal surfaces Ni(111) and Co(0001) and intercalated by a monoatomic layer of Au. For both systems, a linear E(k) dispersion of massless Dirac fermions is observed in the graphene pi-band in the vicinity of the Fermi energy. Spin-resolved photoemission from the graphene pi-band shows that the ferromagnetic polarization of graphene/Ni(111) and graphene/Co(0001) is negligible and that graphene on Ni(111) is after intercalation of Au spin-orbit split by the Rashba effect. In the last part, a time-resolved x-ray magnetic circular dichroic-photoelectron emission microscopy study of a permalloy platelet comprising three cross-tie domain walls is presented. It is shown how a fast picosecond magnetic response in the precessional motion of the magnetization can be induced by means of a laser-excited photoswitch. From a comparision to micromagnetic calculations it is demonstrated that the relatively high precessional frequency observed in the experiments is directly linked to the nature of the vortex/antivortex dynamics and its response to the magnetic perturbation. This includes the time-dependent reversal of the vortex core polarization, a process which is beyond the limit of detection in the present experiments.}, language = {en} } @phdthesis{Knopf2006, author = {Knopf, Brigitte}, title = {On intrinsic uncertainties in earth system modelling}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-10949}, school = {Universit{\"a}t Potsdam}, year = {2006}, abstract = {Uncertainties are pervasive in the Earth System modelling. This is not just due to a lack of knowledge about physical processes but has its seeds in intrinsic, i.e. inevitable and irreducible, uncertainties concerning the process of modelling as well. Therefore, it is indispensable to quantify uncertainty in order to determine, which are robust results under this inherent uncertainty. The central goal of this thesis is to explore how uncertainties map on the properties of interest such as phase space topology and qualitative dynamics of the system. We will address several types of uncertainty and apply methods of dynamical systems theory on a trendsetting field of climate research, i.e. the Indian monsoon. For the systematic analysis concerning the different facets of uncertainty, a box model of the Indian monsoon is investigated, which shows a saddle node bifurcation against those parameters that influence the heat budget of the system and that goes along with a regime shift from a wet to a dry summer monsoon. As some of these parameters are crucially influenced by anthropogenic perturbations, the question is whether the occurrence of this bifurcation is robust against uncertainties in parameters and in the number of considered processes and secondly, whether the bifurcation can be reached under climate change. Results indicate, for example, the robustness of the bifurcation point against all considered parameter uncertainties. The possibility of reaching the critical point under climate change seems rather improbable. A novel method is applied for the analysis of the occurrence and the position of the bifurcation point in the monsoon model against parameter uncertainties. This method combines two standard approaches: a bifurcation analysis with multi-parameter ensemble simulations. As a model-independent and therefore universal procedure, this method allows investigating the uncertainty referring to a bifurcation in a high dimensional parameter space in many other models. With the monsoon model the uncertainty about the external influence of El Ni{\~n}o / Southern Oscillation (ENSO) is determined. There is evidence that ENSO influences the variability of the Indian monsoon, but the underlying physical mechanism is discussed controversially. As a contribution to the debate three different hypotheses are tested of how ENSO and the Indian summer monsoon are linked. In this thesis the coupling through the trade winds is identified as key in linking these two key climate constituents. On the basis of this physical mechanism the observed monsoon rainfall data can be reproduced to a great extent. Moreover, this mechanism can be identified in two general circulation models (GCMs) for the present day situation and for future projections under climate change. Furthermore, uncertainties in the process of coupling models are investigated, where the focus is on a comparison of forced dynamics as opposed to fully coupled dynamics. The former describes a particular type of coupling, where the dynamics from one sub-module is substituted by data. Intrinsic uncertainties and constraints are identified that prevent the consistency of a forced model with its fully coupled counterpart. Qualitative discrepancies between the two modelling approaches are highlighted, which lead to an overestimation of predictability and produce artificial predictability in the forced system. The results suggest that bistability and intermittent predictability, when found in a forced model set-up, should always be cross-validated with alternative coupling designs before being taken for granted. All in this, this thesis contributes to the fundamental issue of dealing with uncertainties the climate modelling community is confronted with. Although some uncertainties allow for including them in the interpretation of the model results, intrinsic uncertainties could be identified, which are inevitable within a certain modelling paradigm and are provoked by the specific modelling approach.}, subject = {Unsicherheit}, language = {en} } @phdthesis{GostkowskaLekner2024, author = {Gostkowska-Lekner, Natalia Katarzyna}, title = {Organic-inorganic hybrids based on P3HT and mesoporous silicon for thermoelectric applications}, doi = {10.25932/publishup-62047}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-620475}, school = {Universit{\"a}t Potsdam}, pages = {121}, year = {2024}, abstract = {This thesis presents a comprehensive study on synthesis, structure and thermoelectric transport properties of organic-inorganic hybrids based on P3HT and porous silicon. The effect of embedding polymer in silicon pores on the electrical and thermal transport is studied. Morphological studies confirm successful polymer infiltration and diffusion doping with roughly 50\% of the pore space occupied by conjugated polymer. Synchrotron diffraction experiments reveal no specific ordering of the polymer inside the pores. P3HT-pSi hybrids show improved electrical transport by five orders of magnitude compared to porous silicon and power factor values comparable or exceeding other P3HT-inorganic hybrids. The analysis suggests different transport mechanisms in both materials. In pSi, the transport mechanism relates to a Meyer-Neldel compansation rule. The analysis of hybrids' data using the power law in Kang-Snyder model suggests that a doped polymer mainly provides charge carriers to the pSi matrix, similar to the behavior of a doped semiconductor. Heavily suppressed thermal transport in porous silicon is treated with a modified Landauer/Lundstrom model and effective medium theories, which reveal that pSi agrees well with the Kirkpatrick model with a 68\% percolation threshold. Thermal conductivities of hybrids show an increase compared to the empty pSi but the overall thermoelectric figure of merit ZT of P3HT-pSi hybrid exceeds both pSi and P3HT as well as bulk Si.}, language = {en} } @phdthesis{Yadavalli2014, author = {Yadavalli, Nataraja Sekhar}, title = {Advances in experimental methods to probe surface relief grating formation mechanism in photosensitive materials}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71213}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {When azobenzene-modified photosensitive polymer films are irradiated with light interference patterns, topographic variations in the film develop that follow the electric field vector distribution resulting in the formation of surface relief grating (SRG). The exact correspondence of the electric field vector orientation in interference pattern in relation to the presence of local topographic minima or maxima of SRG is in general difficult to determine. In my thesis, we have established a systematic procedure to accomplish the correlation between different interference patterns and the topography of SRG. For this, we devise a new setup combining an atomic force microscope and a two-beam interferometer (IIAFM). With this set-up, it is possible to track the topography change in-situ, while at the same time changing polarization and phase of the impinging interference pattern. To validate our results, we have compared two photosensitive materials named in short as PAZO and trimer. This is the first time that an absolute correspondence between the local distribution of electric field vectors of interference pattern and the local topography of the relief grating could be established exhaustively. In addition, using our IIAFM we found that for a certain polarization combination of two orthogonally polarized interfering beams namely SP (↕, ↔) interference pattern, the topography forms SRG with only half the period of the interference patterns. Exploiting this phenomenon we are able to fabricate surface relief structures below diffraction limit with characteristic features measuring only 140 nm, by using far field optics with a wavelength of 491 nm. We have also probed for the stresses induced during the polymer mass transport by placing an ultra-thin gold film on top (5-30 nm). During irradiation, the metal film not only deforms along with the SRG formation, but ruptures in regular and complex manner. The morphology of the cracks differs strongly depending on the electric field distribution in the interference pattern even when the magnitude and the kinetic of the strain are kept constant. This implies a complex local distribution of the opto-mechanical stress along the topography grating. The neutron reflectivity measurements of the metal/polymer interface indicate the penetration of metal layer within the polymer resulting in the formation of bonding layer that confirms the transduction of light induced stresses in the polymer layer to a metal film.}, language = {en} } @phdthesis{Lysyakova2017, author = {Lysyakova, Liudmila}, title = {Interaction of azobenzene containing surfactants with plasmonic nanoparticles}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-403359}, school = {Universit{\"a}t Potsdam}, pages = {viii, 155}, year = {2017}, abstract = {The goal of this thesis is related to the question how to introduce and combine simultaneously plasmonic and photoswitching properties to different nano-objects. In this thesis I investigate the complexes between noble metal nanoparticles and cationic surfactants containing azobenzene units in their hydrophobic tail, employing absorption spectroscopy, surface zeta-potential, and electron microscopy. In the first part of the thesis, the formation of complexes between negatively charged laser ablated spherical gold nanoparticles and cationic azobenzene surfactants in trans- conformation is explored. It is shown that the constitution of the complexes strongly depends on a surfactant-to-gold molar ratio. At certain molar ratios, particle self-assembly into nanochains and their aggregation have been registered. At higher surfactant concentrations, the surface charge of nanoparticles turned positive, attributed to the formation of the stabilizing double layer of azobenzene surfactants on gold nanoparticle surfaces. These gold-surfactant complexes remained colloidally stable. UV light induced trans-cis isomerization of azobenzene surfactant molecules and thus perturbed the stabilizing surfactant shell, causing nanoparticle aggregation. The results obtained with silver and silicon nanoparticles mimick those for the comprehensively studied gold nanoparticles, corroborating the proposed model of complex formation. In the second part, the interaction between plasmonic metal nanoparticles (Au, Ag, Pd, alloy Au-Ag, Au-Pd), as well as silicon nanoparticles, and cis-isomers of azobenzene containing compounds is addressed. Cis-trans thermal isomerization of azobenzenes was enhanced in the presence of gold, palladium, and alloy gold-palladium nanoparticles. The influence of the surfactant structure and nanoparticle material on the azobenzene isomerization rate is expounded. Gold nanoparticles showed superior catalytic activity for thermal cis-trans isomerization of azobenzenes. In a joint project with theoretical chemists, we demonstrated that the possible physical origin of this phenomenon is the electron transfer between azobenzene moieties and nanoparticle surfaces. In the third part, complexes between gold nanorods and azobenzene surfactants with different tail length were exposed to UV and blue light, inducing trans-cis and cis-trans isomerization of surfactant, respectively. At the same time, the position of longitudinal plasmonic absorption maximum of gold nanorods experienced reversible shift responding to the changes in local dielectric environment. Surface plasmon resonance condition allowed the estimation of the refractive index of azobenzene containing surfactants in solution.}, language = {en} } @phdthesis{Feldmann2018, author = {Feldmann, David}, title = {Light-driven diffusioosmosis}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-417184}, school = {Universit{\"a}t Potsdam}, pages = {viii, 150}, year = {2018}, abstract = {The emergence of microfluidics created the need for precise and remote control of micron-sized objects. I demonstrate how light-sensitive motion can be induced at the micrometer scale by a simple addition of a photosensitive surfactant, which makes it possible to trigger hydrophobicity with light. With point-like laser irradiation, radial inward and outward hydrodynamic surface flows are remotely switched on and off. In this way, ensembles of microparticles can be moved toward or away from the irradiation center. Particle motion is analyzed according to varying parameters, such as surfactant and salt concentration, illumination condition, surface hydrophobicity, and surface structure. The physical origin of this process is the so-called light-driven diffusioosmosis (LDDO), a phenomenon that was discovered in the framework of this thesis and is described experimentally and theoretically in this work. To give a brief explanation, a focused light irradiation induces a local photoisomerization that creates a concentration gradient at the solid-liquid interface. To compensate for the change in osmotic pressure near the surface, a hydrodynamic flow along the surface is generated. Surface-surfactant interaction largely governs LDDO. It is shown that surfactant adsorption depends on the isomerization state of the surfactant. Photoisomerization, therefore, triggers a surfactant attachment or detachment from the surface. This change is considered to be one of the reasons for the formation of LDDO flow. These flows are introduced not only by a focused laser source but also by global irradiation. Porous particles show reversible repulsive and attractive interactions when dispersed in the solution of photosensitive surfactant. Repulsion and attraction is controlled by the irradiation wavelength. Illumination with red light leads to formation of aggregates, while illumination with blue light leads to the formation of a well-separated grid with equal interparticle distances, between 2µm and 80µm, depending on the particle surface density. These long-range interactions are considered to be a result of an increase or decrease of surfactant concentration around each particle, depending on the irradiation wavelength. Surfactant molecules adsorb inside the pores of the particles. A light-induced photoisomerization changes adsorption to the pores and drives surfactant molecules to the outside. The concentration gradients generate symmetric flows around each single particle resulting in local LDDO. With a break of the symmetry (i.e., by closing one side of the particle with a metal cap), one can achieve active self-propelled particle motion.}, language = {en} } @phdthesis{Lever2022, author = {Lever, Fabiano}, title = {Probing the ultrafast dynamics of 2-Thiouracil with soft x-rays}, doi = {10.25932/publishup-55523}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-555230}, school = {Universit{\"a}t Potsdam}, pages = {129}, year = {2022}, abstract = {Understanding the changes that follow UV-excitation in thionucleobases is of great importance for the study of light-induced DNA lesions and, in a broader context, for their applications in medicine and biochemistry. Their ultrafast photophysical reactions can alter the chemical structure of DNA - leading to damages to the genetic code - as proven by the increased skin cancer risk observed for patients treated with thiouracil for its immunosuppressant properties. In this thesis, I present four research papers that result from an investigation of the ultrafast dynamics of 2-thiouracil by means of ultrafast x-ray probing combined with electron spectroscopy. A molecular jet in the gas phase is excited with a uv pulse and then ionized with x-ray radiation from a Free Electron Laser. The kinetic energy of the emitted electrons is measured in a magnetic bottle spectrometer. The spectra of the measured photo and Auger electrons are used to derive a picture of the changes in the geometrical and electronic configurations. The results allow us to look at the dynamical processes from a new perspective, thanks to the element- and site- sensitivity of x-rays. The custom-built URSA-PQ apparatus used in the experiment is described. It has been commissioned and used at the FL24 beamline of the FLASH2 FEL, showing an electron kinetic energy resolution of ∆E/E ~ 40 and a pump-probe timing resolution of 190 f s. X-ray only photoelectron and Auger spectra of 2-thiouracil are extracted from the data and used as reference. Photoelectrons following the formation a 2p core hole are identified, as well as resonant and non-resonant Auger electrons. At the L 1 edge, Coster-Kronig decay is observed from the 2s core hole. The UV-induced changes in the 2p photoline allow the study the electronic-state dynamics. With the use of an Excited-State Chemical Shift (ESCS) model, we observe a ultrafast ground-state relaxation within 250 f s. Furthermore, an oscillation with a 250 f s period is observed in the 2p binding energy, showing a coherent population exchange between electronic states. Auger electrons from the 2p core hole are analyzed and used to deduce a ultrafast C -S bond expansion on a sub 100 f s scale. A simple Coulomb-model, coupled to quantum chemical calculations, can be used to infer the geometrical changes in the molecular structure.}, language = {en} } @phdthesis{Daschewski2016, author = {Daschewski, Maxim}, title = {Thermophony in real gases}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-98866}, school = {Universit{\"a}t Potsdam}, pages = {79}, year = {2016}, abstract = {A thermophone is an electrical device for sound generation. The advantages of thermophones over conventional sound transducers such as electromagnetic, electrostatic or piezoelectric transducers are their operational principle which does not require any moving parts, their resonance-free behavior, their simple construction and their low production costs. In this PhD thesis, a novel theoretical model of thermophonic sound generation in real gases has been developed. The model is experimentally validated in a frequency range from 2 kHz to 1 MHz by testing more then fifty thermophones of different materials, including Carbon nano-wires, Titanium, Indium-Tin-Oxide, different sizes and shapes for sound generation in gases such as air, argon, helium, oxygen, nitrogen and sulfur hexafluoride. Unlike previous approaches, the presented model can be applied to different kinds of thermophones and various gases, taking into account the thermodynamic properties of thermophone materials and of adjacent gases, degrees of freedom and the volume occupied by the gas atoms and molecules, as well as sound attenuation effects, the shape and size of the thermophone surface and the reduction of the generated acoustic power due to photonic emission. As a result, the model features better prediction accuracy than the existing models by a factor up to 100. Moreover, the new model explains previous experimental findings on thermophones which can not be explained with the existing models. The acoustic properties of the thermophones have been tested in several gases using unique, highly precise experimental setups comprising a Laser-Doppler-Vibrometer combined with a thin polyethylene film which acts as a broadband and resonance-free sound-pressure detector. Several outstanding properties of the thermophones have been demonstrated for the first time, including the ability to generate arbitrarily shaped acoustic signals, a greater acoustic efficiency compared to conventional piezoelectric and electrostatic airborne ultrasound transducers, and applicability as powerful and tunable sound sources with a bandwidth up to the megahertz range and beyond. Additionally, new applications of thermophones such as the study of physical properties of gases, the thermo-acoustic gas spectroscopy, broad-band characterization of transfer functions of sound and ultrasound detection systems, and applications in non-destructive materials testing are discussed and experimentally demonstrated.}, language = {en} }