@misc{BeniniSchenkel2017,
  author    = {Benini, Marco and Schenkel, Alexander},
  title     = {Quantum field theories on categories fibered in groupoids},
  series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  number    = {895},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-43154},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-431541},
  pages     = {48},
  year      = {2017},
  abstract  = {We introduce an abstract concept of quantum field theory on categories fibered in groupoids over the category of spacetimes. This provides us with a general and flexible framework to study quantum field theories defined on spacetimes with extra geometric structures such as bundles, connections and spin structures. Using right Kan extensions, we can assign to any such theory an ordinary quantum field theory defined on the category of spacetimes and we shall clarify under which conditions it satisfies the axioms of locally covariant quantum field theory. The same constructions can be performed in a homotopy theoretic framework by using homotopy right Kan extensions, which allows us to obtain first toy-models of homotopical quantum field theories resembling some aspects of gauge theories.},
  language  = {en}
}
@phdthesis{Shenar2017,
  author    = {Shenar, Tomer},
  title     = {Comprehensive analyses of massive binaries and implications on stellar evolution},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-104857},
  school      = {Universit{\"a}t Potsdam},
  pages     = {187},
  year      = {2017},
  abstract  = {Via their powerful radiation, stellar winds, and supernova explosions, massive stars (Mini \& 8 M☉) bear a tremendous impact on galactic evolution. It became clear in recent decades that the majority of massive stars reside in binary systems. This thesis sets as a goal to quantify the impact of binarity (i.e., the presence of a companion star) on massive stars. For this purpose, massive binary systems in the Local Group, including OB-type binaries, high mass X-ray binaries (HMXBs), and Wolf-Rayet (WR) binaries, were investigated by means of spectral, orbital, and evolutionary analyses. The spectral analyses were performed with the non-local thermodynamic equillibrium (non-LTE) Potsdam Wolf-Rayet (PoWR) model atmosphere code. Thanks to critical updates in the calculation of the hydrostatic layers, the code became a state-of-the-art tool applicable for all types of hot massive stars (Chapter 2). The eclipsing OB-type triple system δ Ori served as an intriguing test-case for the new version of the PoWR code, and provided key insights regarding the formation of X-rays in massive stars (Chapter 3). We further analyzed two prototypical HMXBs, Vela X-1 and IGR J17544-2619, and obtained fundamental conclusions regarding the dichotomy of two basic classes of HMXBs (Chapter 4). We performed an exhaustive analysis of the binary R 145 in the Large Magellanic Cloud (LMC), which was claimed to host the most massive stars known. We were able to disentangle the spectrum of the system, and performed an orbital, polarimetric, and spectral analysis, as well as an analysis of the wind-wind collision region. The true masses of the binary components turned out to be significantly lower than suggested, impacting our understanding of the initial mass function and stellar evolution at low metallicity (Chapter 5). Finally, all known WR binaries in the Small Magellanic Cloud (SMC) were analyzed. Although it was theoretical predicted that virtually all WR stars in the SMC should be formed via mass-transfer in binaries, we find that binarity was not important for the formation of the known WR stars in the SMC, implying a strong discrepancy between theory and observations (Chapter 6).},
  language  = {en}
}
@misc{CestnikRosenblum2017,
  author    = {Cestnik, Rok and Rosenblum, Michael},
  title     = {Reconstructing networks of pulse-coupled oscillators from spike trains},
  series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  number    = {760},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-43628},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-436285},
  pages     = {8},
  year      = {2017},
  abstract  = {We present an approach for reconstructing networks of pulse-coupled neuronlike oscillators from passive observation of pulse trains of all nodes. It is assumed that units are described by their phase response curves and that their phases are instantaneously reset by incoming pulses. Using an iterative procedure, we recover the properties of all nodes, namely their phase response curves and natural frequencies, as well as strengths of all directed connections.},
  language  = {en}
}
@misc{NiebuhrHeuer2017,
  author    = {Niebuhr, Mario and Heuer, Axel},
  title     = {Phase measurement and far-field reconstruction on externally coupled laser diode arrays},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-402140},
  pages     = {6},
  year      = {2017},
  abstract  = {Passive coherent combination of several discrete low power laser diodes is a promising way to overcome the issue of degrading beam quality when scaling single emitters to > 10W output power. Such systems would be an efficient alternative to current high power sources, yet they suffer from fatal coherence loss when operated well above threshold. We present a new way to obtain detailed coherence information for laser diode arrays using a spatial light modulator to help identify the underlying decoherence processes. Reconstruction tests of the emitted far-field distribution are conducted to evaluate the performance of our setup.},
  language  = {en}
}
@phdthesis{Paul2017,
  author    = {Paul, Fabian},
  title     = {Markov state modeling of binding and conformational changes of proteins},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-404273},
  school      = {Universit{\"a}t Potsdam},
  pages     = {X, 112},
  year      = {2017},
  abstract  = {Proteins are molecules that are essential for life and carry out an enormous number of functions in organisms. To this end, they change their conformation and bind to other molecules. However, the interplay between conformational change and binding is not fully understood. In this work, this interplay is investigated with molecular dynamics (MD) simulations of the protein-peptide system Mdm2-PMI and by analysis of data from relaxation experiments. The central task it to uncover the binding mechanism, which is described by the sequence of (partial) binding events and conformational change events including their probabilities. In the simplest case, the binding mechanism is described by a two-step model: binding followed by conformational change or conformational change followed by binding. In the general case, longer sequences with multiple conformational changes and partial binding events are possible as well as parallel pathways that differ in their sequences of events. The theory of Markov state models (MSMs) provides the theoretical framework in which all these cases can be modeled. For this purpose, MSMs are estimated in this work from MD data, and rate equation models, which are related to MSMs, are inferred from experimental relaxation data. The MD simulation and Markov modeling of the PMI-Mdm2 system shows that PMI and Mdm2 can bind via multiple pathways. A main result of this work is a dissociation rate on the order of one event per second, which was calculated using Markov modeling and is in agreement with experiment. So far, dissociation rates and transition rates of this magnitude have only been calculated with methods that speed up transitions by acting with time-dependent, external forces on the binding partners. The simulation technique developed in this work, in contrast, allows the estimation of dissociation rates from the combination of free energy calculation and direct MD simulation of the fast binding process. Two new statistical estimators TRAM and TRAMMBAR are developed to estimate a MSM from the joint data of both simulation types. In addition, a new analysis technique for time-series data from chemical relaxation experiments is developed in this work. It allows to identify one of the above-mentioned two-step mechanisms as the mechanism that underlays the data. The new method is valid for a broader range of concentrations than previous methods and therefore allows to choose the concentrations such that the mechanism can be uniquely identified. It is successfully tested with data for the binding of recoverin to a rhodopsin kinase peptide.},
  language  = {en}
}
@phdthesis{Kayser2017,
  author    = {Kayser, Markus},
  title     = {Wechselwirkung der atmosph{\"a}rischen Grenzschicht mit synoptisch-skaligen Prozessen w{\"a}hrend der N-ICE2015 Kampagne},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-411124},
  school      = {Universit{\"a}t Potsdam},
  pages     = {147},
  year      = {2017},
  abstract  = {Die Arktis erw{\"a}rmt sich schneller als der Rest der Erde. Die Auswirkungen manifestieren sich unter Anderem in einer verst{\"a}rkten Erw{\"a}rmung der arktischen Grenzschicht. Diese Arbeit befasst sich mit Wechselwirkungen zwischen synoptischen Zyklonen und der arktischen Atmosph{\"a}re auf lokalen bis {\"u}berregionalen Skalen. Ausgangspunkt daf{\"u}r sind Messdaten und Modellsimulationen f{\"u}r den Zeitraum der N-ICE2015 Expedition, die von Anfang Januar bis Ende Juni 2015 im arktischen Nordatlantiksektor stattgefunden hat. Anhand von Radiosondenmessungen lassen sich Auswirkungen von synoptischen Zyklonen am deutlichsten im Winter erkennen, da sie durch die Advektion warmer und feuchter Luftmassen in die Arktis den Zustand der Atmosph{\"a}re von einem strahlungs-klaren in einen strahlungs-opaken {\"a}ndern. Obwohl dieser scharfe Kontrast nur im Winter existiert, zeigt die Analyse, dass der integrierte Wasserdampf als Indikator f{\"u}r die Advektion von Luftmassen aus niedrigen Breiten in die Arktis auch im Fr{\"u}hjahr geeignet ist. Neben der Advektion von Luftmassen wird der Einfluss der Zyklonen auf die statische Stabilit{\"a}t charakterisiert. Beim Vergleich der N-ICE2015 Beobachtungen mit der SHEBA Kampagne (1997/1998), die {\"u}ber dickerem Eis stattfand, finden sich trotz der unterschiedlichen Meereisregime {\"A}hnlichkeiten in der statischen Stabilit{\"a}t der Atmosph{\"a}re. Die beobachteten Differenzen in der Stabilit{\"a}t lassen sich auf Unterschiede in der synoptischen Aktivit{\"a}t zur{\"u}ckf{\"u}hren. Dies l{\"a}sst vermuten, dass die d{\"u}nnere Eisdecke auf saisonalen Zeitskalen nur einen geringen Einfluss auf die thermodynamische Struktur der arktischen Troposph{\"a}re besitzt, solange eine dicke Schneeschicht sie bedeckt. Ein weiterer Vergleich mit den parallel zur N-ICE2015 Kampagne gestarteten Radiosonden der AWIPEV Station in Ny-{\AA}esund, Spitzbergen, macht deutlich, dass die synoptischen Zyklonen oberhalb der Orographie auf saisonalen Zeitskalen das Wettergeschehen bestimmen. Des Weiteren werden f{\"u}r Februar 2015 die Auswirkungen von in der Vertikalen variiertem Nudging auf die Entwicklung der Zyklonen am Beispiel des hydrostatischen regionalen Klimamodells HIRHAM5 untersucht. Es zeigt sich, dass die Unterschiede zwischen den acht Modellsimulationen mit abnehmender Anzahl der genudgten Level zunehmen. Die gr{\"o}ßten Differenzen resultieren vornehmlich aus dem zeitlichen Versatz der Entwicklung synoptischer Zyklonen. Zur Korrektur des Zeitversatzes der Zykloneninitiierung gen{\"u}gt es bereits, Nudging in den unterstem 250 m der Troposph{\"a}re anzuwenden. Daneben findet sich zwischen den genudgten HIRHAM5-Simulation und den in situ Messungen der gleiche positive Temperaturbias, den auch ERA-Interim besitzt. Das freie HIRHAM hingegen reproduziert das positive Ende der N-ICE2015 Temperaturverteilung gut, besitzt aber einen starken negativen Bias, der sehr wahrscheinlich aus einer Untersch{\"a}tzung des Feuchtegehalts resultiert. An Beispiel einer Zyklone wird gezeigt, dass Nudging Einfluss auf die Lage der H{\"o}hentiefs besitzt, die ihrerseits die Zyklonenentwicklung am Boden beeinflussen. Im Weiteren wird mittels eines f{\"u}r kleine Ensemblegr{\"o}ßen geeigneten Varianzmaßes eine statistische Einsch{\"a}tzung der Wirkung des Nudgings auf die Vertikale getroffen. Es wird festgestellt, dass die {\"A}hnlichkeit der Modellsimulationen in der unteren Troposph{\"a}re generell h{\"o}her ist als dar{\"u}ber und in 500 hPa ein lokales Minimum besitzt. Im letzten Teil der Analyse wird die Wechselwirkung der oberen und unteren Stratosph{\"a}re anhand zuvor betrachteter Zyklonen mit Daten der ERA-Interim Reanalyse untersucht. Lage und Ausrichtung des Polarwirbels erzeugten ab Anfang Februar 2015 eine ungew{\"o}hnlich große Meridionalkomponente des Tropopausenjets, die Zugbahnen in die zentrale Arktis beg{\"u}nstigte. Am Beispiel einer Zyklone wird die {\"U}bereinstimmung der synoptischen Entwicklung mit den theoretischen Annahmen {\"u}ber den abw{\"a}rts gerichteten Einfluss der Stratosph{\"a}re auf die Troposph{\"a}re hervorgehoben. Dabei spielt die nicht-lineare Wechselwirkung zwischen der Orographie Gr{\"o}nlands, einer Intrusion stratosph{\"a}rischer Luft in die Troposph{\"a}re sowie einer in Richtung Arktis propagierender Rossby-Welle eine tragende Rolle. Als Indikator dieser Wechselwirkung werden horizontale Signaturen aus abwechselnd aufsteigender und absinkender Luft innerhalb der Troposph{\"a}re identifiziert.},
  language  = {de}
}
@phdthesis{KianiAlibagheri2017,
  author    = {Kiani Alibagheri, Bahareh},
  title     = {On structural properties of magnetosome chains},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-398849},
  school      = {Universit{\"a}t Potsdam},
  pages     = {XIV, 117},
  year      = {2017},
  abstract  = {Magnetotaktische Bakterien besitzen eine intrazellul{\"a}re Struktur, die Magnetosomenkette genannt wird. Magnetosomenketten enthalten Nanopartikel von Eisenkristallen, die von einer Membran umschlossen und entlang eines Zytoskelettfilaments ausgerichtet sind. Dank der Magnetosomenkette ist es magnetotaktischen Bakterien m{\"o}glich sich in Magnetfeldern auszurichten und entlang magnetischer Feldlinien zu schwimmen. Die ausf{\"u}hrliche Untersuchung der strukturellen Eigenschaften der Magnetosomenkette in magnetotaktischen Bakterien sind von grundlegendem wissenschaftlichen Interesse, weil sie Einblicke in die Anordnung des Zytoskeletts von Bakterien erlauben. In dieser Studie haben wir ein neues theoretisches Modell entwickelt, dass sich dazu eignet, die strukturellen Eigenschaften der Magnetosomenketten in magnetotaktischen Bakterien zu erforschen. Zuerst wenden wir uns der Biegesteifigkeit von Magnetosomenketten zu, die von zwei Faktoren beeinflusst wird: Die magnetische Wechselwirkung der Magnetosomenpartikel und der Biegesteifigkeit des Zytoskelettfilaments auf welchem die Magnetosome verankert sind. Unsere Analyse zeigt, dass sich die lineare Konfiguration von Magnetosomenpartikeln ohne die Stabilisierung durch das Zytoskelett zu einer ring{\"o}rmigen Struktur biegen w{\"u}rde, die kein magnetisches Moment aufweist und daher nicht die Funktion eines Kompass in der zellul{\"a}ren Navigation einnehmen k{\"o}nnte. Wir schlussfolgern, dass das Zytoskelettfilament eine stabilisierende Wirkung auf die lineare Konfiguration hat und eine ringf{\"o}rmige Anordnung verhindert. Wir untersuchen weiter die Gleichgewichtskonfiguration der Magnetosomenpartikel in einer linearen Kette und in einer geschlossenen ringf{\"o}rmigen Struktur. Dabei beobachteten wir ebenfalls, dass f{\"u}r eine stabile lineare Anordnung eine Bindung an ein Zytoskelettfilament notwendig ist. In einem externen magnetischen Feld wird die Stabilit{\"a}t der Magnetosomenketten durch die Dipol-Dipol-Wechselwirkung, {\"u}ber die Steifheit und die Bindungsenergie der Proteinstruktur, die die Partikel des Magnetosomen mit dem Filament verbinden, erreicht. Durch Beobachtungen w{\"a}hrend und nach der Behandlung einer Magnetosomenkette mit einem externen magnetischen Feld, l{\"a}sst sich begr{\"u}nden, dass die Stabilisierung von Magnetosomenketten durch Zytoskelettfilamente {\"u}ber proteinhaltige Bindeglieder und die dynamischen Eigenschaften dieser Strukturen realisiert wird. Abschließend wenden wir unser Modell bei der Untersuchung von ferromagnetischen Resonanz-Spektren von Magnetosomenketten in einzelnen Zellen von magnetotaktischen Bakterien an. Wir erforschen den Effekt der magnetokristallinen Anistropie in ihrer dreifach-Symmetrie, die in ferromagnetischen Ressonanz Spektren beobachtet wurden und die Besonderheit von verschiedenen Spektren, die bei Mutanten dieser Bakterien auftreten.},
  language  = {en}
}
@misc{HerrmannMetzler2017,
  author    = {Herrmann, Carl J. J. and Metzler, Ralf},
  title     = {A self-avoiding walk with neural delays as a model of fixational eye movements},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-403742},
  pages     = {17},
  year      = {2017},
  abstract  = {Fixational eye movements show scaling behaviour of the positional mean-squared displacement with a characteristic transition from persistence to antipersistence for increasing time-lag. These statistical patterns were found to be mainly shaped by microsaccades (fast, small-amplitude movements). However, our re-analysis of fixational eye-movement data provides evidence that the slow component (physiological drift) of the eyes exhibits scaling behaviour of the mean-squared displacement that varies across human participants. These results suggest that drift is a correlated movement that interacts with microsaccades. Moreover, on the long time scale, the mean-squared displacement of the drift shows oscillations, which is also present in the displacement auto-correlation function. This finding lends support to the presence of time-delayed feedback in the control of drift movements. Based on an earlier non-linear delayed feedback model of fixational eye movements, we propose and discuss different versions of a new model that combines a self-avoiding walk with time delay. As a result, we identify a model that reproduces oscillatory correlation functions, the transition from persistence to antipersistence, and microsaccades.},
  language  = {en}
}
@misc{MenzelPuhlmannHeuer2017,
  author    = {Menzel, Ralf and Puhlmann, Dirk and Heuer, Axel},
  title     = {Complementarity in single photon interference - the role of the mode function and vacuum fields},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-395210},
  pages     = {7},
  year      = {2017},
  abstract  = {Background In earlier experiments the role of the vacuum fields could be demonstrated as the source of complementarity with respect to the temporal properties (Heuer et al., Phys. Rev. Lett. 114:053601, 2015). Methods Single photon first order interferences of spatially separated regions from the cone structure of spontaneous parametric down conversion allow for analyzing the role of the mode function in quantum optics regarding the complementarity principle. Results Here the spatial coherence properties of these vacuum fields are demonstrated as the physical reason for complementarity in these single photon quantum optical experiments. These results are directly connected to the mode picture in classical optics. Conclusion The properties of the involved vacuum fields selected via the measurement process are the physical background of the complementarity principle in quantum optics.},
  language  = {en}
}
@misc{CherstvyVinodAghionetal.2017,
  author    = {Cherstvy, Andrey G. and Vinod, Deepak and Aghion, Erez and Chechkin, Aleksei V. and Metzler, Ralf},
  title     = {Time averaging, ageing and delay analysis of financial time series},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-400541},
  pages     = {11},
  year      = {2017},
  abstract  = {We introduce three strategies for the analysis of financial time series based on time averaged observables. These comprise the time averaged mean squared displacement (MSD) as well as the ageing and delay time methods for varying fractions of the financial time series. We explore these concepts via statistical analysis of historic time series for several Dow Jones Industrial indices for the period from the 1960s to 2015. Remarkably, we discover a simple universal law for the delay time averaged MSD. The observed features of the financial time series dynamics agree well with our analytical results for the time averaged measurables for geometric Brownian motion, underlying the famed Black-Scholes-Merton model. The concepts we promote here are shown to be useful for financial data analysis and enable one to unveil new universal features of stock market dynamics.},
  language  = {en}
}
@misc{WolfHolzmeierWagneretal.2017,
  author    = {Wolf, Thomas J. A. and Holzmeier, Fabian and Wagner, Isabella and Berrah, Nora and Bostedt, Christoph and Bozek, John and Bucksbaum, Philip H. and Coffee, Ryan and Cryan, James and Farrell, Joe and Feifel, Raimund and Martinez, Todd J. and McFarland, Brian and Mucke, Melanie and Nandi, Saikat and Tarantelli, Francesco and Fischer, Ingo and G{\"u}hr, Markus},
  title     = {Observing Femtosecond Fragmentation Using Ultrafast X-ray-Induced Auger Spectra},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-402692},
  pages     = {11},
  year      = {2017},
  abstract  = {Molecules often fragment after photoionization in the gas phase. Usually, this process can only be investigated spectroscopically as long as there exists electron correlation between the photofragments. Important parameters, like their kinetic energy after separation, cannot be investigated. We are reporting on a femtosecond time-resolved Auger electron spectroscopy study concerning the photofragmentation dynamics of thymine. We observe the appearance of clearly distinguishable signatures from thymine′s neutral photofragment isocyanic acid. Furthermore, we observe a time-dependent shift of its spectrum, which we can attribute to the influence of the charged fragment on the Auger electron. This allows us to map our time-dependent dataset onto the fragmentation coordinate. The time dependence of the shift supports efficient transformation of the excess energy gained from photoionization into kinetic energy of the fragments. Our method is broadly applicable to the investigation of photofragmentation processes.},
  language  = {en}
}
@phdthesis{ThielemannKuehn2017,
  author    = {Thielemann-K{\"u}hn, Nele},
  title     = {Optically induced ferro- and antiferromagnetic dynamics in the rare-earth metal dysprosium},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-402994},
  school      = {Universit{\"a}t Potsdam},
  pages     = {iv, 121},
  year      = {2017},
  abstract  = {Approaching physical limits in speed and size of today's magnetic storage and processing technologies demands new concepts for controlling magnetization and moves researches on optically induced magnetic dynamics. Studies on photoinduced magnetization dynamics and their underlying mechanisms have been primarily performed on ferromagnetic metals. Ferromagnetic dynamics bases on transfer of the conserved angular momentum connected with atomic magnetic moments out of the parallel aligned magnetic system into other degrees of freedom. In this thesis the so far rarely studied response of antiferromagnetic order to ultra-short optical laser pulses in a metal is investigated. The experiments were performed at the FemtoSpex slicing facility at the storage ring BESSY II, an unique source for ultra-short elliptically polarized x-ray pulses. Laser-induced changes of the 4f-magnetic order parameter in ferro- and antiferromagnetic dysprosium (Dy), were studied by x-ray methods, which yield directly comparable quantities. The discovered fundamental differences in the temporal and spatial behavior of ferro- and antiferrmagnetic dynamics are assinged to an additional channel for angular momentum transfer, which reduces the antiferromagnetic order by redistributing angular momentum within the non-parallel aligned magnetic system, and hence conserves the zero net magnetization. It is shown that antiferromagnetic dynamics proceeds considerably faster and more energy-efficient than demagnetization in ferromagnets. By probing antiferromagnetic order in time and space, it is found to be affected along the whole sample depth of an in situ grown 73 nm tick Dy film. Interatomic transfer of angular momentum via fast diffusion of laser-excited 5d electrons is held responsible for the out-most long-ranging effect. Ultrafast ferromagnetic dynamics can be expected to base on the same origin, which however leads to demagnetization only in regions close to interfaces caused by super-diffusive spin transport. Dynamics due to local scattering processes of excited but less mobile electrons, occur in both magnetic alignments only in directly excited regions of the sample and on slower pisosecond timescales. The thesis provides fundamental insights into photoinduced magnetic dynamics by directly comparing ferro- and antiferromagnetic dynamics in the same material and by consideration of the laser-induced magnetic depth profile.},
  language  = {en}
}
@misc{SchwarzlGodecMetzler2017,
  author    = {Schwarzl, Maria and Godec, Aljaž and Metzler, Ralf},
  title     = {Quantifying non-ergodicity of anomalous diffusion with higher order moments},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-402109},
  pages     = {18},
  year      = {2017},
  abstract  = {Anomalous diffusion is being discovered in a fast growing number of systems. The exact nature of this anomalous diffusion provides important information on the physical laws governing the studied system. One of the central properties analysed for finite particle motion time series is the intrinsic variability of the apparent diffusivity, typically quantified by the ergodicity breaking parameter EB. Here we demonstrate that frequently EB is insufficient to provide a meaningful measure for the observed variability of the data. Instead, important additional information is provided by the higher order moments entering by the skewness and kurtosis. We analyse these quantities for three popular anomalous diffusion models. In particular, we find that even for the Gaussian fractional Brownian motion a significant skewness in the results of physical measurements occurs and needs to be taken into account. Interestingly, the kurtosis and skewness may also provide sensitive estimates of the anomalous diffusion exponent underlying the data. We also derive a new result for the EB parameter of fractional Brownian motion valid for the whole range of the anomalous diffusion parameter. Our results are important for the analysis of anomalous diffusion but also provide new insights into the theory of anomalous stochastic processes.},
  language  = {en}
}
@misc{PolitiPikovskijUllner2017,
  author    = {Politi, Antonio and Pikovskij, Arkadij and Ullner, Ekkehard},
  title     = {Chaotic macroscopic phases in one-dimensional oscillators},
  series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  number    = {721},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-42979},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-429790},
  pages     = {20},
  year      = {2017},
  abstract  = {The connection between the macroscopic description of collective chaos and the underlying microscopic dynamics is thoroughly analysed in mean-field models of one-dimensional oscillators. We investigate to what extent infinitesimal perturbations of the microscopic configurations can provide information also on the stability of the corresponding macroscopic phase. In ensembles of identical one-dimensional dynamical units, it is possible to represent the microscopic configurations so as to make transparent their connection with the macroscopic world. As a result, we find evidence of an intermediate, mesoscopic, range of distances, over which the instability is neither controlled by the microscopic equations nor by the macroscopic ones. We examine a whole series of indicators, ranging from the usual microscopic Lyapunov exponents, to the collective ones, including finite-amplitude exponents. A system of pulse-coupled oscillators is also briefly reviewed as an example of non-identical phase oscillators where collective chaos spontaneously emerges.},
  language  = {en}
}
@misc{GrebenkovMetzlerOshanin2017,
  author    = {Grebenkov, Denis S. and Metzler, Ralf and Oshanin, Gleb},
  title     = {Effects of the target aspect ratio and intrinsic reactivity onto diffusive search in bounded domains},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-403726},
  pages     = {11},
  year      = {2017},
  abstract  = {We study the mean first passage time (MFPT) to a reaction event on a specific site in a cylindrical geometry—characteristic, for instance, for bacterial cells, with a concentric inner cylinder representing the nuclear region of the bacterial cell. Asimilar problem emerges in the description of a diffusive search by a transcription factor protein for a specific binding region on a single strand of DNA.We develop a unified theoretical approach to study the underlying boundary value problem which is based on a self-consistent approximation of the mixed boundary condition. Our approach permits us to derive explicit, novel, closed-form expressions for the MFPT valid for a generic setting with an arbitrary relation between the system parameters.Weanalyse this general result in the asymptotic limits appropriate for the above-mentioned biophysical problems. Our investigation reveals the crucial role of the target aspect ratio and of the intrinsic reactivity of the binding region, which were disregarded in previous studies. Theoretical predictions are confirmed by numerical simulations.},
  language  = {en}
}
@phdthesis{Lysyakova2017,
  author    = {Lysyakova, Liudmila},
  title     = {Interaction of azobenzene containing surfactants with plasmonic nanoparticles},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-403359},
  school      = {Universit{\"a}t Potsdam},
  pages     = {viii, 155},
  year      = {2017},
  abstract  = {The goal of this thesis is related to the question how to introduce and combine simultaneously plasmonic and photoswitching properties to different nano-objects. In this thesis I investigate the complexes between noble metal nanoparticles and cationic surfactants containing azobenzene units in their hydrophobic tail, employing absorption spectroscopy, surface zeta-potential, and electron microscopy. In the first part of the thesis, the formation of complexes between negatively charged laser ablated spherical gold nanoparticles and cationic azobenzene surfactants in trans- conformation is explored. It is shown that the constitution of the complexes strongly depends on a surfactant-to-gold molar ratio. At certain molar ratios, particle self-assembly into nanochains and their aggregation have been registered. At higher surfactant concentrations, the surface charge of nanoparticles turned positive, attributed to the formation of the stabilizing double layer of azobenzene surfactants on gold nanoparticle surfaces. These gold-surfactant complexes remained colloidally stable. UV light induced trans-cis isomerization of azobenzene surfactant molecules and thus perturbed the stabilizing surfactant shell, causing nanoparticle aggregation. The results obtained with silver and silicon nanoparticles mimick those for the comprehensively studied gold nanoparticles, corroborating the proposed model of complex formation. In the second part, the interaction between plasmonic metal nanoparticles (Au, Ag, Pd, alloy Au-Ag, Au-Pd), as well as silicon nanoparticles, and cis-isomers of azobenzene containing compounds is addressed. Cis-trans thermal isomerization of azobenzenes was enhanced in the presence of gold, palladium, and alloy gold-palladium nanoparticles. The influence of the surfactant structure and nanoparticle material on the azobenzene isomerization rate is expounded. Gold nanoparticles showed superior catalytic activity for thermal cis-trans isomerization of azobenzenes. In a joint project with theoretical chemists, we demonstrated that the possible physical origin of this phenomenon is the electron transfer between azobenzene moieties and nanoparticle surfaces. In the third part, complexes between gold nanorods and azobenzene surfactants with different tail length were exposed to UV and blue light, inducing trans-cis and cis-trans isomerization of surfactant, respectively. At the same time, the position of longitudinal plasmonic absorption maximum of gold nanorods experienced reversible shift responding to the changes in local dielectric environment. Surface plasmon resonance condition allowed the estimation of the refractive index of azobenzene containing surfactants in solution.},
  language  = {en}
}
@phdthesis{Qiu2017,
  author    = {Qiu, Xunlin},
  title     = {Ferroelectrets: heterogenous polymer electrets with high electromechanical response},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-398425},
  school      = {Universit{\"a}t Potsdam},
  pages     = {viii, 172},
  year      = {2017},
  abstract  = {Ferroelectrets are internally charged polymer foams or cavity-containing polymer-_lm systems that combine large piezoelectricity with mechanical flexibility and elastic compliance. The term "ferroelectret" was coined based on the fact that it is a space-charge electret that also shows ferroic behavior. In this thesis, comprehensive work on ferroelectrets, and in particular on their preparation, their charging, their piezoelectricity and their applications is reported. For industrial applications, ferroelectrets with well-controlled distributions or even uniform values of cavity size and cavity shape and with good thermal stability of the piezoelectricity are very desirable. Several types of such ferroelectrets are developed using techniques such as straightforward thermal lamination, sandwiching sticky templates with electret films, and screen printing. In particular, uoroethylenepropylene (FEP) _lm systems with tubular-channel openings, prepared by means of the thermal lamination technique, show piezoelectric d33 coefficients of up to 160 pC/N after charging through dielectric barrier discharges (DBDs) . For samples charged at suitable elevated temperatures, the piezoelectricity is stable at temperatures of at least 130°C. These preparation methods are easy to implement at laboratory or industrial scales, and are quite flexible in terms of material selection and cavity geometry design. Due to the uniform and well-controlled cavity structures, samples are also very suitable for fundamental studies on ferroelectrets. Charging of ferroelectrets is achieved via a series of dielectric barrier discharges (DBDs) inside the cavities. In the present work, the DBD charging process is comprehensively studied by means of optical, electrical and electro-acoustic methods. The spectrum of the transient light from the DBDs in cellular polypropylene (PP) ferroelectrets directly confirms the ionization of molecular nitrogen, and allows the determination of the electric field in the discharge. Detection of the light emission reveals not only DBDs under high applied voltage but also back discharges when the applied voltage is reduced to sufficiently low values. Back discharges are triggered by the internally deposited charges, as the breakdown inside the cavities is controlled by the sum of the applied electric field and the electric field of the deposited charges. The remanent effective polarization is determined by the breakdown strength of the gas-filled cavities. These findings form the basis of more efficient charging techniques for ferroelectrets such as charging with high-pressure air, thermal poling and charging assisted by gas exchange. With the proposed charging strategies, the charging efficiency of ferroelectrets can be enhanced significantly. After charging, the cavities can be considered as man-made macroscopic dipoles whose direction can be reversed by switching the polarity of the applied voltage. Polarization-versus-electric-field (P(E)) hysteresis loops in ferroelectrets are observed by means of an electro-acoustic method combined with dielectric resonance spectroscopy. P(E) hysteresis loops in ferrroelectrets are also obtained by more direct measurements using a modified Sawyer-Tower circuit. Hysteresis loops prove the ferroic behavior of ferroelectrets. However, repeated switching of the macroscopic dipoles involves complex physico-chemical processes. The DBD charging process generates a cold plasma with numerous active species and thus modifies the inner polymer surfaces of the cavities. Such treatments strongly affect the chargeability of the cavities. At least for cellular PP ferroelectrets, repeated DBDs in atmospheric conditions lead to considerable fatigue of the effective polarization and of the resulting piezoelectricity. The macroscopic dipoles in ferroelectrets are highly compressible, and hence the piezoelectricity is essentially the primary effect. It is found that the piezoelectric d33 coefficient is proportional to the polarization and the elastic compliance of the sample, providing hints for developing materials with higher piezoelectric sensitivity in the future. Due to their outstanding electromechanical properties, there has been constant interest in the application of ferroelectrets. The antiresonance frequencies (fp) of ferroelectrets are sensitive to the boundary conditions during measurement. A tubular-channel FEP ferroelectret is conformably attached to a self-organized minimum-energy dielectric elastomer actuator (DEA). It turns out that the antiresonance frequency (fp) of the ferroelectret film changes noticeably with the bending angle of the DEA. Therefore, the actuation of DEAs can be used to modulate the fp value of ferroelectrets, but fp can also be exploited for in-situ diagnosis and for precise control of the actuation of the DEA. Combination of DEAs and ferroelectrets opens up various new possibilities for application.},
  language  = {en}
}
@misc{SchimkaLomadzeRabeetal.2017,
  author    = {Schimka, Selina and Lomadze, Nino and Rabe, Maren and Kopyshev, Alexey and Lehmann, Maren and von Klitzing, Regine and Rumyantsev, Artem M. and Kramarenko, Elena Yu. and Santer, Svetlana},
  title     = {Photosensitive microgels containing azobenzene surfactants of different charges},
  series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  number    = {461},
  issn      = {1866-8372},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-413528},
  year      = {2017},
  abstract  = {We report on light sensitive microgel particles that can change their volume reversibly in response to illumination with light of different wavelengths. To make the anionic microgels photosensitive we add surfactants with a positively charged polyamine head group and an azobenzene containing tail. Upon illumination, azobenzene undergoes a reversible photo-isomerization reaction from a trans- to a cis-state accompanied by a change in the hydrophobicity of the surfactant. Depending on the isomerization state, the surfactant molecules are either accommodated within the microgel (trans-state) resulting in its shrinkage or desorbed back into water (cis-isomer) letting the microgel swell. We have studied three surfactants differing in the number of amino groups, so that the number of charges of the surfactant head varies between 1 and 3. We have found experimentally and theoretically that the surfactant concentration needed for microgel compaction increases with decreasing number of charges of the head group. Utilization of polyamine azobenzene containing surfactants for the light triggered remote control of the microgel size opens up a possibility for applications of light responsive microgels as drug carriers in biology and medicine.},
  language  = {en}
}
@phdthesis{Leonhardt2017,
  author    = {Leonhardt, Helmar},
  title     = {Chemotaxis, shape and adhesion dynamics of amoeboid cells studied by impedance fluctuations in open and confined spaces},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-405016},
  school      = {Universit{\"a}t Potsdam},
  pages     = {98},
  year      = {2017},
  abstract  = {Die vorliegende Arbeit befasst sich mit elektrischen Impedanzmessungen von ameoboiden Zellen auf Mikroelektroden. Der Modellorganismus Dictyostelium discoideum zeigt unter der Bedingung des Nahrungsentzugs einen {\"U}bergang zum kollektiven Verhalten, bei dem sich chemotaktische Zellen zu einem multizellul{\"a}ren Aggregat zusammenschliessen. Wir zeigen wie Impedanzaufnahmen {\"u}ber die Dynamik der Zell-substrat Adh{\"a}sion ein pr{\"a}zises Bild der Phasen der Aggregation liefern. Dar{\"u}berhinaus zeigen wir zum ersten mal systematische Einzelzellmessungen von Wildtyp-Zellen und vier Mutanten, die sich in der St{\"a}rke der Substratadh {\"a}sion unterscheiden. Wir zeichneten die projizierte Zellfl{\"a}che durch Zeitverlaufsmikroskopie auf und fanden eine Korrelation zwischen den quasi-periodischen Oszillationen in der Kinetik der projizierten Fl{\"a}che - der Zellform-Oszillation - und dem Langzeittrend des Impedanzsignals. Amoeboidale Motilit{\"a}t offenbart sich typischerweise durch einen Zyklus von Membranausst{\"u}lpung, Substratadh{\"a}sion, Vorw{\"a}rtsziehen des Zellk{\"o}rpers und Einziehen des hinteren Teils der Zelle. Dieser Motilit{\"a}tszyklus resultiert in quasi-periodischen Oszillationen der projizierten Zellfl{\"a}che und der Impedanz. In allen gemessenen Zelllinien wurden f{\"u}r diesen Zyklus {\"a}hnliche Periodendauern beobachtet trotz der Unterschiede in der Anhaftungsst{\"a}rke. Wir beobachteten, dass die St{\"a}rke der Zell-substrat Anhaftung die Impedanz stark beeinflusst, indem die Abweichungen vom Mittelwert (die Gr{\"o}sse der Fluktuationen) vergr{\"o}ssert sind bei Zellen, die die vom Zytoskelett generierten Kr{\"a}fte effektiv auf das Substrat {\"u}bertragen. Zum Beispiel sind bei talA- Zellen, in welchen das Actin verankernde Protein Talin fehlt, die Fluktuationen stark reduziert. Einzelzellkraft-Spektroskopie und Ergebnisse eines Abl{\"o}sungsassays, bei dem Adh{\"a}sionskraft gemessen wird indem Zellen einer Scherspannung ausgesetzt werden, best{\"a}tigen, dass die Gr{\"o}sse der Impedanz-fluktuationen ein korrektes Mass f{\"u}r die St{\"a}rke der Substratadh{\"a}sion ist. Schliesslich haben wir uns auch mit dem Einbau von Zell-substrat-Impedanz-Sensoren in mikro-fluidische Apparaturen befasst. Ein chip-basierter elektrischer Chemotaxis Assay wurde entwickelt, der die Geschwindigkeit chemotaktischer Zellen misst, welche entlang eines chemischen Konzentrationsgradienten {\"u}ber Mikroelektroden wandern.},
  language  = {en}
}
@phdthesis{Schuermann2017,
  author    = {Sch{\"u}rmann, Robin Mathis},
  title     = {Interaction of the potential DNA-radiosensitizer 8-bromoadenine with free and plasmonically generated electrons},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407017},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xi, 120},
  year      = {2017},
  abstract  = {In Germany more than 200.000 persons die of cancer every year, which makes it the second most common cause of death. Chemotherapy and radiation therapy are often combined to exploit a supra-additive effect, as some chemotherapeutic agents like halogenated nucleobases sensitize the cancerous tissue to radiation. The radiosensitizing action of certain therapeutic agents can be at least partly assigned to their interaction with secondary low energy electrons (LEEs) that are generated along the track of the ionizing radiation. In the therapy of cancer DNA is an important target, as severe DNA damage like double strand breaks induce the cell death. As there is only a limited number of radiosensitizing agents in clinical practice, which are often strongly cytotoxic, it would be beneficial to get a deeper understanding of the interaction of less toxic potential radiosensitizers with secondary reactive species like LEEs. Beyond that LEEs can be generated by laser illuminated nanoparticles that are applied in photothermal therapy (PTT) of cancer, which is an attempt to treat cancer by an increase of temperature in the cells. However, the application of halogenated nucleobases in PTT has not been taken into account so far. In this thesis the interaction of the potential radiosensitizer 8-bromoadenine (8BrA) with LEEs was studied. In a first step the dissociative electron attachment (DEA) in the gas phase was studied in a crossed electron-molecular beam setup. The main fragmentation pathway was revealed as the cleavage of the C-Br bond. The formation of a stable parent anion was observed for electron energies around 0 eV. Furthermore, DNA origami nanostructures were used as platformed to determine electron induced strand break cross sections of 8BrA sensitized oligonucleotides and the corresponding nonsensitized sequence as a function of the electron energy. In this way the influence of the DEA resonances observed for the free molecules on the DNA strand breaks was examined. As the surrounding medium influences the DEA, pulsed laser illuminated gold nanoparticles (AuNPs) were used as a nanoscale electron source in an aqueous environment. The dissociation of brominated and native nucleobases was tracked with UV-Vis absorption spectroscopy and the generated fragments were identified with surface enhanced Raman scattering (SERS). Beside the electron induced damage, nucleobase analogues are decomposed in the vicinity of the laser illuminatednanoparticles due to the high temperatures. In order to get a deeper understanding of the different dissociation mechanisms, the thermal decomposition of the nucleobases in these systems was studied and the influence of the adsorption kinetics of the molecules was elucidated. In addition to the pulsed laser experiments, a dissociative electron transfer from plasmonically generated "hot electrons" to 8BrA was observed under low energy continuous wave laser illumination and tracked with SERS. The reaction was studied on AgNPs and AuNPs as a function of the laser intensity and wavelength. On dried samples the dissociation of the molecule was described by fractal like kinetics. In solution, the dissociative electron transfer was observed as well. It turned out that the timescale of the reaction rates were slightly below typical integration times of Raman spectra. In consequence such reactions need to be taken into account in the interpretation of SERS spectra of electrophilic molecules. The findings in this thesis help to understand the interaction of brominated nucleobases with plasmonically generated electrons and free electrons. This might help to evaluate the potential radiosensitizing action of such molecules in cancer radiation therapy and PTT.},
  language  = {en}
}