@misc{BeniniSchenkel2017,
  author    = {Benini, Marco and Schenkel, Alexander},
  title     = {Quantum field theories on categories fibered in groupoids},
  series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe},
  number    = {895},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-43154},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-431541},
  pages     = {48},
  year      = {2017},
  abstract  = {We introduce an abstract concept of quantum field theory on categories fibered in groupoids over the category of spacetimes. This provides us with a general and flexible framework to study quantum field theories defined on spacetimes with extra geometric structures such as bundles, connections and spin structures. Using right Kan extensions, we can assign to any such theory an ordinary quantum field theory defined on the category of spacetimes and we shall clarify under which conditions it satisfies the axioms of locally covariant quantum field theory. The same constructions can be performed in a homotopy theoretic framework by using homotopy right Kan extensions, which allows us to obtain first toy-models of homotopical quantum field theories resembling some aspects of gauge theories.},
  language  = {en}
}
@misc{ClusellaPolitiRosenblum2016,
  author    = {Clusella, Pau and Politi, Antonio and Rosenblum, Michael},
  title     = {A minimal model of self-consistent partial synchrony},
  series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe},
  number    = {890},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-43626},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-436266},
  pages     = {19},
  year      = {2016},
  abstract  = {We show that self-consistent partial synchrony in globally coupled oscillatory ensembles is a general phenomenon. We analyze in detail appearance and stability properties of this state in possibly the simplest setup of a biharmonic Kuramoto-Daido phase model as well as demonstrate the effect in limit-cycle relaxational Rayleigh oscillators. Such a regime extends the notion of splay state from a uniform distribution of phases to an oscillating one. Suitable collective observables such as the Kuramoto order parameter allow detecting the presence of an inhomogeneous distribution. The characteristic and most peculiar property of self-consistent partial synchrony is the difference between the frequency of single units and that of the macroscopic field.},
  language  = {en}
}
@misc{vonReppertPuddellKocetal.2016,
  author    = {von Reppert, Alexander and Puddell, J. and Koc, A. and Reinhardt, M. and Leitenberger, Wolfram and Dumesnil, K. and Zamponi, Flavio and Bargheer, Matias},
  title     = {Persistent nonequilibrium dynamics of the thermal energies in the spin and phonon systems of an antiferromagnet},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-98710},
  pages     = {11},
  year      = {2016},
  abstract  = {We present a temperature and fluence dependent Ultrafast X-Ray Diffraction study of a laser-heated antiferromagnetic dysprosium thin film. The loss of antiferromagnetic order is evidenced by a pronounced lattice contraction. We devise a method to determine the energy flow between the phonon and spin system from calibrated Bragg peak positions in thermal equilibrium. Reestablishing the magnetic order is much slower than the cooling of the lattice, especially around the N{\´e}el temperature. Despite the pronounced magnetostriction, the transfer of energy from the spin system to the phonons in Dy is slow after the spin-order is lost.},
  language  = {en}
}
@misc{Guehr2016,
  author    = {G{\"u}hr, Markus},
  title     = {Ultrafast Soft X-ray Probing of Gas Phase Molecular Dynamics},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-97215},
  year      = {2016},
  abstract  = {The molecular ability to selectively and efficiently convert sunlight into other forms of energy like heat, bond change, or charge separation is truly remarkable. The decisive steps in these transformations often happen on a femtosecond timescale and require transitions among different electronic states that violate the Born-Oppenheimer approximation (BOA). Non-BOA transitions pose challenges to both theory and experiment. From a theoretical point of view, excited state dynamics and nonadiabatic transitions both are difficult problems (see Figure 1(a)). However, the theory on non-BOA dynamics has advanced significantly over the last two decades. Full dynamical simulations for molecules of the size of nucleobases have been possible for a couple of years and allow predictions of experimental observables like photoelectron energy or ion yield. The availability of these calculations for isolated molecules has spurred new experimental efforts to develop methods that are sufficiently different from all optical techniques. For determination of transient molecular structure, femtosecond X-ray diffraction and electron diffraction have been implemented on optically excited molecules.},
  language  = {en}
}
@misc{PalyulinAlaNissilaMetzler2014,
  author    = {Palyulin, Vladimir V. and Ala-Nissila, Tapio and Metzler, Ralf},
  title     = {Polymer translocation: the first two decades and the recent diversification},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-76287},
  pages     = {9016 -- 9037},
  year      = {2014},
  abstract  = {Probably no other field of statistical physics at the borderline of soft matter and biological physics has caused such a flurry of papers as polymer translocation since the 1994 landmark paper by Bezrukov, Vodyanoy, and Parsegian and the study of Kasianowicz in 1996. Experiments, simulations, and theoretical approaches are still contributing novel insights to date, while no universal consensus on the statistical understanding of polymer translocation has been reached. We here collect the published results, in particular, the famous-infamous debate on the scaling exponents governing the translocation process. We put these results into perspective and discuss where the field is going. In particular, we argue that the phenomenon of polymer translocation is non-universal and highly sensitive to the exact specifications of the models and experiments used towards its analysis.},
  language  = {en}
}
@misc{MetzlerBauerRasmussenetal.2015,
  author    = {Metzler, Ralf and Bauer, Maximilian and Rasmussen, Emil S. and Lomholt, Michael A.},
  title     = {Real sequence effects on the search dynamics of transcription factors on DNA},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-79411},
  year      = {2015},
  abstract  = {Recent experiments show that transcription factors (TFs) indeed use the facilitated diffusion mechanism to locate their target sequences on DNA in living bacteria cells: TFs alternate between sliding motion along DNA and relocation events through the cytoplasm. From simulations and theoretical analysis we study the TF-sliding motion for a large section of the DNA-sequence of a common E. coli strain, based on the two-state TF-model with a fast-sliding search state and a recognition state enabling target detection. For the probability to detect the target before dissociating from DNA the TF-search times self-consistently depend heavily on whether or not an auxiliary operator (an accessible sequence similar to the main operator) is present in the genome section. Importantly, within our model the extent to which the interconversion rates between search and recognition states depend on the underlying nucleotide sequence is varied. A moderate dependence maximises the capability to distinguish between the main operator and similar sequences. Moreover, these auxiliary operators serve as starting points for DNA looping with the main operator, yielding a spectrum of target detection times spanning several orders of magnitude. Auxiliary operators are shown to act as funnels facilitating target detection by TFs.},
  language  = {en}
}
@misc{GhoshCherstvyPetrovetal.2016,
  author    = {Ghosh, Surya K. and Cherstvy, Andrey G. and Petrov, Eugene P. and Metzler, Ralf},
  title     = {Interactions of rod-like particles on responsive elastic sheets},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-95882},
  year      = {2016},
  abstract  = {What are the physical laws of the mutual interactions of objects bound to cell membranes, such as various membrane proteins or elongated virus particles? To rationalise this, we here investigate by extensive computer simulations mutual interactions of rod-like particles adsorbed on the surface of responsive elastic two-dimensional sheets. Specifically, we quantify sheet deformations as a response to adhesion of such filamentous particles. We demonstrate that tip-to-tip contacts of rods are favoured for relatively soft sheets, while side-by-side contacts are preferred for stiffer elastic substrates. These attractive orientation-dependent substrate-mediated interactions between the rod-like particles on responsive sheets can drive their aggregation and self-assembly. The optimal orientation of the membrane-bound rods is established via responding to the elastic energy profiles created around the particles. We unveil the phase diagramme of attractive-repulsive rod-rod interactions in the plane of their separation and mutual orientation. Applications of our results to other systems featuring membrane-associated particles are also discussed.},
  language  = {en}
}
@misc{Goychuk2016,
  author    = {Goychuk, Igor},
  title     = {Quantum ergodicity breaking in semi-classical electron transfer dynamics},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-102264},
  pages     = {11},
  year      = {2016},
  abstract  = {Can the statistical properties of single-electron transfer events be correctly predicted within a common equilibrium ensemble description? This fundamental in nanoworld question of ergodic behavior is scrutinized within a very basic semi-classical curve-crossing problem. It is shown that in the limit of non-adiabatic electron transfer (weak tunneling) well-described by the Marcus-Levich-Dogonadze(MLD) rate the answer is yes. However, in the limit of the so-called solvent-controlled adiabatic electron transfer, a profound breaking of ergodicity occurs. Namely, a common description based on the ensemble reduced density matrix with an initial equilibrium distribution of the reaction coordinate is not able to reproduce the statistics of single-trajectory events in this seemingly classical regime. For sufficiently large activation barriers, the ensemble survival probability in a state remains nearly exponential with the inverse rate given by the sum of the adiabatic curve crossing (Kramers) time and the inverse MLD rate. In contrast, near to the adiabatic regime, the single-electron survival probability is clearly non-exponential, even though it possesses an exponential tail which agrees well with the ensemble description. Initially, it is well described by a Mittag-Leffler distribution with a fractional rate. Paradoxically, the mean transfer time in this classical on the ensemble level regime is well described by the inverse of the nonadiabatic quantum tunneling rate on a single particle level. An analytical theory is developed which perfectly agrees with stochastic simulations and explains our findings.},
  language  = {en}
}
@misc{PavlenkoSanderMitzscherlingetal.2016,
  author    = {Pavlenko, Elena S. and Sander, Mathias and Mitzscherling, Steffen and Pudell, Jan-Etienne and Zamponi, Flavio and R{\"o}ssle, Matthias and Bojahr, Andre and Bargheer, Matias},
  title     = {Azobenzene - functionalized polyelectrolyte nanolayers as ultrafast optoacoustic transducers},
  volume    = {8},
  doi       = {10.1039/C6NR01448H},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-101996},
  pages     = {13297 -- 13302},
  year      = {2016},
  abstract  = {We introduce azobenzene-functionalized polyelectrolyte multilayers as efficient, inexpensive optoacoustic transducers for hyper-sound strain waves in the GHz range. By picosecond transient reflectivity measurements we study the creation of nanoscale strain waves, their reflection from interfaces, damping by scattering from nanoparticles and propagation in soft and hard adjacent materials like polymer layers, quartz and mica. The amplitude of the generated strain ε ∼ 5 × 10-4 is calibrated by ultrafast X-ray diffraction.},
  language  = {en}
}
@misc{deCarvalhoMetzlerCherstvy2016,
  author    = {de Carvalho, Sidney J. and Metzler, Ralf and Cherstvy, Andrey G.},
  title     = {Critical adsorption of polyelectrolytes onto planar and convex highly charged surfaces},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-100295},
  pages     = {17},
  year      = {2016},
  abstract  = {We study the adsorption-desorption transition of polyelectrolyte chains onto planar, cylindrical and spherical surfaces with arbitrarily high surface charge densities by massive Monte Carlo computer simulations. We examine in detail how the well known scaling relations for the threshold transition—demarcating the adsorbed and desorbed domains of a polyelectrolyte near weakly charged surfaces—are altered for highly charged interfaces. In virtue of high surface potentials and large surface charge densities, the Debye-H{\"u}ckel approximation is often not feasible and the nonlinear Poisson-Boltzmann approach should be implemented. At low salt conditions, for instance, the electrostatic potential from the nonlinear Poisson-Boltzmann equation is smaller than the Debye-H{\"u}ckel result, such that the required critical surface charge density for polyelectrolyte adsorption σc increases. The nonlinear relation between the surface charge density and electrostatic potential leads to a sharply increasing critical surface charge density with growing ionic strength, imposing an additional limit to the critical salt concentration above which no polyelectrolyte adsorption occurs at all. We contrast our simulations findings with the known scaling results for weak critical polyelectrolyte adsorption onto oppositely charged surfaces for the three standard geometries. Finally, we discuss some applications of our results for some physical-chemical and biophysical systems.},
  language  = {en}
}