@article{GrasslRitterSchulz2022, author = {Grassl, Sandra and Ritter, Christoph and Schulz, Alexander}, title = {The nature of the Ny-Alesund wind field analysed by high-resolution windlidar data}, series = {Remote sensing}, volume = {14}, journal = {Remote sensing}, number = {15}, publisher = {MDPI}, address = {Basel}, issn = {2072-4292}, doi = {10.3390/rs14153771}, pages = {24}, year = {2022}, abstract = {In this work we present windlidar data for the research village Ny-Alesund located on Svalbard in the European Arctic (78.923 degrees N, 11.928 degrees F) from 2013 to 2021. The data have a resolution of 50 m and 10 min with an overlapping height of about 150 m. The maximum range depends on the meteorologic situation. Up to 1000 m altitude the data availability is better than 71\%. We found that the highest wind speeds occur in November and December, the lowest ones in June and July, up to 500 m altitude the wind is channelled strongly in ESE to NW direction parallel to the fjord axis and the synoptic conditions above 1000 m altitude already dominate. While the fraction of windy days (v > 10 m/s) varies significantly from month to month, there is no overall trend of the wind visible in our data set. We define gusts and jets by the requirement of wind maxima v > 2 m/s above and below a wind maximum. In total, more than 24,000 of these events were identified (corresponding to 6\% of the time), of which 223 lasted for at least 100 min ("Long Jets"). All of these events are fairly equally distributed over the months relatively to the available data. Further, gusts and jets follow different distributions (in terms of altitude or depths) and occur more frequently for synoptic flow from roughly a southerly direction. Jets do not show a clear correlation between occurrence and synoptic flow. Gusts and jets are not related to cloud cover. We conclude that the atmosphere from 400 m to 1000 m above Ny-Alesund is dominated by a turbulent wind shear zone, which connects the micrometeorology in the atmospheric boundary layer (ABL) with the synoptic flow.}, language = {en} } @article{BlockGuenterDuarteRodriguesetal.2021, author = {Block, Inga and G{\"u}nter, Christina and Duarte Rodrigues, Alysson and Paasch, Silvia and Hesemann, Peter and Taubert, Andreas}, title = {Carbon adsorbents from spent coffee for removal of methylene blue and methyl orange from water}, series = {Materials / Molecular Diversity Preservation International}, volume = {14}, journal = {Materials / Molecular Diversity Preservation International}, number = {14}, publisher = {Molecular Diversity Preservation International}, address = {Basel}, issn = {1996-1944}, doi = {10.3390/ma14143996}, pages = {18}, year = {2021}, abstract = {Activated carbons (ACs) were prepared from dried spent coffee (SCD), a biological waste product, to produce adsorbents for methylene blue (MB) and methyl orange (MO) from aqueous solution. Pre-pyrolysis activation of SCD was achieved via treatment of the SCD with aqueous sodium hydroxide solutions at 90 °C. Pyrolysis of the pretreated SCD at 500 °C for 1 h produced powders with typical characteristics of AC suitable and effective for dye adsorption. As an alternative to the rather harsh base treatment, calcium carbonate powder, a very common and abundant resource, was also studied as an activator. Mixtures of SCD and CaCO3 (1:1 w/w) yielded effective ACs for MO and MB removal upon pyrolysis needing only small amounts of AC to clear the solutions. A selectivity of the adsorption process toward anionic (MO) or cationic (MB) dyes was not observed.}, language = {en} } @article{RuszkiewiczPapatheodorouJaecketal.2023, author = {Ruszkiewicz, Joanna and Papatheodorou, Ylea and J{\"a}ck, Nathalie and Melzig, Jasmin and Eble, Franziska and Pirker, Annika and Thomann, Marius and Haberer, Andreas and Rothmiller, Simone and B{\"u}rkle, Alexander and Mangerich, Aswin}, title = {NAD+ Acts as a protective factor in cellular stress response to DNA alkylating agents}, series = {Cells : open access journal}, volume = {12}, journal = {Cells : open access journal}, number = {19}, publisher = {MDPI}, address = {Basel}, issn = {2073-4409}, doi = {10.3390/cells12192396}, pages = {22}, year = {2023}, abstract = {Sulfur mustard (SM) and its derivatives are potent genotoxic agents, which have been shown to trigger the activation of poly (ADP-ribose) polymerases (PARPs) and the depletion of their substrate, nicotinamide adenine dinucleotide (NAD+). NAD+ is an essential molecule involved in numerous cellular pathways, including genome integrity and DNA repair, and thus, NAD+ supplementation might be beneficial for mitigating mustard-induced (geno)toxicity. In this study, the role of NAD+ depletion and elevation in the genotoxic stress response to SM derivatives, i.e., the monofunctional agent 2-chloroethyl-ethyl sulfide (CEES) and the crosslinking agent mechlorethamine (HN2), was investigated with the use of NAD+ booster nicotinamide riboside (NR) and NAD+ synthesis inhibitor FK866. The effects were analyzed in immortalized human keratinocytes (HaCaT) or monocyte-like cell line THP-1. In HaCaT cells, NR supplementation, increased NAD+ levels, and elevated PAR response, however, did not affect ATP levels or DNA damage repair, nor did it attenuate long- and short-term cytotoxicities. On the other hand, the depletion of cellular NAD+ via FK866 sensitized HaCaT cells to genotoxic stress, particularly CEES exposure, whereas NR supplementation, by increasing cellular NAD+ levels, rescued the sensitizing FK866 effect. Intriguingly, in THP-1 cells, the NR-induced elevation of cellular NAD+ levels did attenuate toxicity of the mustard compounds, especially upon CEES exposure. Together, our results reveal that NAD+ is an important molecule in the pathomechanism of SM derivatives, exhibiting compound-specificity. Moreover, the cell line-dependent protective effects of NR are indicative of system-specificity of the application of this NAD+ booster.}, language = {en} } @article{LachmairFischerGerjets2022, author = {Lachmair, Martin and Fischer, Martin H. and Gerjets, Peter}, title = {Action-control mappings of interfaces in virtual reality: a study of embodied interaction}, series = {Frontiers in virtual reality}, volume = {3}, journal = {Frontiers in virtual reality}, publisher = {Frontiers Media}, address = {Lausanne}, issn = {2673-4192}, doi = {10.3389/frvir.2022.976849}, pages = {11}, year = {2022}, abstract = {The development of interface technologies is driven by the goal of making interaction more positive through natural action-control mappings. In Virtual Reality (VR), the entire body is potentially involved for interaction, using such mappings with a maximum of degrees of freedom. The downside is the increase in interaction complexity, which can dramatically influence interface design. A cognitive perspective on detailed aspects of interaction patterns is lacking in common interface design guidelines, although it can be helpful to make this complexity controllable and, thus, make interaction behavior predictable. In the present study, the distinction between grounding, embodiment, and situatedness (the GES framework) is applied to organize aspects of interactions and to compare them with each other. In two experiments, zooming into or out of emotional pictures through changes of arm span was examined in VR. There are qualitatively different aspects during such an interaction: i) perceptual aspects caused by zooming are fundamental for human behavior (Grounding: closer objects appear bigger) and ii) aspects of gestures correspond to the physical characteristics of the agents (Embodiment: little distance of hands signals little or, in contrast, "creating more detail"). The GES-framework sets aspects of Grounding against aspects of Embodiment, thus allowing to predict human behavior regarding these qualitatively different aspects. For the zooming procedure, the study shows that Grounding can overrule Embodiment in interaction design. Thus, we propose GES as a cognitive framework that can help to inform interaction guidelines for user interface design in VR.}, language = {en} } @article{SieberWilkeAppeltetal.2022, author = {Sieber, Melanie J. and Wilke, Max and Appelt, Oona and Oelze, Marcus and Koch-M{\"u}ller, Monika}, title = {Melting relations of Ca-Mg carbonates and trace element signature of carbonate melts up to 9 GPa - a proxy for melting of carbonated mantle lithologies}, series = {European journal of mineralogy}, volume = {34}, journal = {European journal of mineralogy}, number = {5}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {0935-1221}, doi = {10.5194/ejm-34-411-2022}, pages = {411 -- 424}, year = {2022}, abstract = {The most profound consequences of the presence of Ca-Mg carbonates (CaCO3-MgCO3) in the Earth's upper mantle may be to lower the melting temperatures of the mantle and control the melt composition. Low-degree partial melting of a carbonate-bearing mantle produces CO2-rich, silica-poor melts compositionally imposed by the melting relations of carbonates. Thus, understanding the melting relations in the CaCO3-MgCO3 system facilitates the interpretation of natural carbonate-bearing silicate systems. We report the melting relations of the CaCO3-MgCO3 system and the partition coefficient of trace elements between carbonates and carbonate melt from experiments at high pressure (6 and 9 GPa) and temperature (1300-1800 degrees C) using a rocking multi-anvil press. In the absence of water, Ca-Mg carbonates are stable along geothermal gradients typical of subducting slabs. Ca-Mg carbonates ( similar to Mg0.1-0.9Ca0.9-0.1CO3) partially melt beneath mid-ocean ridges and in plume settings. Ca-Mg carbonates melt incongruently, forming periclase crystals and carbonate melt between 4 and 9 GPa. Furthermore, we show that the rare earth element (REE) signature of Group-I kimberlites, namely strong REE fractionation and depletion of heavy REE relative to the primitive mantle, is resembled by carbonate melt in equilibrium with Ca-bearing magnesite and periclase at 6 and 9 GPa. This suggests that the dolomite-magnesite join of the CaCO3-MgCO3 system might be useful to approximate the REE signature of carbonate-rich melts parental to kimberlites.}, language = {en} } @article{JonasSchwerbelZellneretal.2022, author = {Jonas, Wenke and Schwerbel, Kristin and Zellner, Lisa and J{\"a}hnert, Markus and Gottmann, Pascal and Sch{\"u}rmann, Annette}, title = {Alterations of lipid profile in livers with impaired lipophagy}, series = {International journal of molecular sciences}, volume = {23}, journal = {International journal of molecular sciences}, number = {19}, publisher = {MDPI}, address = {Basel}, issn = {1422-0067}, doi = {10.3390/ijms231911863}, pages = {12}, year = {2022}, abstract = {Non-alcoholic fatty liver disease (NAFLD) is characterized by excessive lipid accumulation in the liver. Various mechanisms such as an increased uptake in fatty acids or de novo synthesis contribute to the development of steatosis and progression to more severe stages. Furthermore, it has been shown that impaired lipophagy, the degradation of lipids by autophagic processes, contributes to NAFLD. Through an unbiased lipidome analysis of mouse livers in a genetic model of impaired lipophagy, we aimed to determine the resulting alterations in the lipidome. Observed changes overlap with those of the human disease. Overall, the entire lipid content and in particular the triacylglycerol concentration increased under conditions of impaired lipophagy. In addition, we detected a reduction in long-chain polyunsaturated fatty acids (PUFAs) and an increased ratio of n-6 PUFAs to n-3 PUFAs, which was due to the depletion of n-3 PUFAs. Although the abundance of major phospholipid classes was reduced, the ratio of phosphatidylcholines to phosphatidylethanolamines was not affected. In conclusion, this study demonstrates that impaired lipophagy contributes to the pathology of NAFLD and is associated with an altered lipid profile. However, the lipid pattern does not appear to be specific for lipophagic alterations, as it resembles mainly that described in relation to fatty liver disease.}, language = {en} } @article{BillingThonickeSakschewskietal.2022, author = {Billing, Maik and Thonicke, Kirsten and Sakschewski, Boris and von Bloh, Werner and Walz, Ariane}, title = {Future tree survival in European forests depends on understorey tree diversity}, series = {Scientific reports}, volume = {12}, journal = {Scientific reports}, number = {1}, publisher = {Springer Nature}, address = {Berlin}, issn = {2045-2322}, doi = {10.1038/s41598-022-25319-7}, pages = {12}, year = {2022}, abstract = {Climate change heavily threatens forest ecosystems worldwide and there is urgent need to understand what controls tree survival and forests stability. There is evidence that biodiversity can enhance ecosystem stability (Loreau and de Mazancourt in Ecol Lett 16:106-115, 2013; McCann in Nature 405:228-233, 2000), however it remains largely unclear whether this also holds for climate change and what aspects of biodiversity might be most important. Here we apply machine learning to outputs of a flexible-trait Dynamic Global Vegetation Model to unravel the effects of enhanced functional tree trait diversity and its sub-components on climate-change resistance of temperate forests (http://www.pik-potsdam.de/similar to billing/video/Forest_Resistance_LPJmLFIT.mp4). We find that functional tree trait diversity enhances forest resistance. We explain this with 1. stronger complementarity effects (similar to 25\% importance) especially improving the survival of trees in the understorey of up to +16.8\% (+/- 1.6\%) and 2. environmental and competitive filtering of trees better adapted to future climate (40-87\% importance). We conclude that forests containing functionally diverse trees better resist and adapt to future conditions. In this context, we especially highlight the role of functionally diverse understorey trees as they provide the fundament for better survival of young trees and filtering of resistant tree individuals in the future.}, language = {en} } @article{KuehneFauthAyBrysonetal.2021, author = {K{\"u}hne, Franziska and Fauth, Henriette and Ay-Bryson, Destina Sevde and Visser, Leonie N.C. and Weck, Florian}, title = {Communicating the diagnosis of cancer or depression}, series = {Cancer medicine}, volume = {10}, journal = {Cancer medicine}, number = {24}, publisher = {Wiley}, address = {Hoboken, New Jersey, USA}, issn = {2045-7634}, doi = {10.1002/cam4.4396}, pages = {9012 -- 9021}, year = {2021}, abstract = {Background Communicating a diagnosis is highly important, yet complex, especially in the context of cancer and mental disorders. The aim was to explore the communication style of an oncologist vs. psychotherapist in an online study. Methods Patients (N = 136: 65 cancer, 71 depression) were randomly assigned to watch a standardized video vignette with one of two communication styles (empathic vs. unempathic). Outcome measures of affectivity, information recall, communication skills, empathy and trust were applied. Results Regardless of diagnosis, empathic communication was associated with the perception of a significantly more empathic (p < 0.001, η2partial = 0.08) and trustworthy practitioner (p = 0.014, η2partial = 0.04) with better communication skills (p = 0.013, η2partial = 0.05). Cancer patients reported a larger decrease in positive affect (p < 0.001, η2partial = 0.15) and a larger increase in negative affect (p < 0.001, η2partial = 0.14) from pre- to post-video than depressive patients. Highly relevant information was recalled better in both groups (p < 0.001, d = 0.61-1.06). Conclusions The results highlight the importance of empathy while communicating both a diagnosis of cancer and a mental disorder. Further research should focus on the communication of a mental disorder in association with cancer.}, language = {en} } @article{MontiRautenstrauchGhanbarietal.2022, author = {Monti, Remo and Rautenstrauch, Pia and Ghanbari, Mahsa and James, Alva Rani and Kirchler, Matthias and Ohler, Uwe and Konigorski, Stefan and Lippert, Christoph}, title = {Identifying interpretable gene-biomarker associations with functionally informed kernel-based tests in 190,000 exomes}, series = {Nature Communications}, volume = {13}, journal = {Nature Communications}, publisher = {Nature Publishing Group UK}, address = {London}, issn = {2041-1723}, doi = {10.1038/s41467-022-32864-2}, pages = {16}, year = {2022}, abstract = {Here we present an exome-wide rare genetic variant association study for 30 blood biomarkers in 191,971 individuals in the UK Biobank. We compare gene- based association tests for separate functional variant categories to increase interpretability and identify 193 significant gene-biomarker associations. Genes associated with biomarkers were ~ 4.5-fold enriched for conferring Mendelian disorders. In addition to performing weighted gene-based variant collapsing tests, we design and apply variant-category-specific kernel-based tests that integrate quantitative functional variant effect predictions for mis- sense variants, splicing and the binding of RNA-binding proteins. For these tests, we present a computationally efficient combination of the likelihood- ratio and score tests that found 36\% more associations than the score test alone while also controlling the type-1 error. Kernel-based tests identified 13\% more associations than their gene-based collapsing counterparts and had advantages in the presence of gain of function missense variants. We introduce local collapsing by amino acid position for missense variants and use it to interpret associations and identify potential novel gain of function variants in PIEZO1. Our results show the benefits of investigating different functional mechanisms when performing rare-variant association tests, and demonstrate pervasive rare-variant contribution to biomarker variability.}, language = {en} } @article{KaapDeederSanchezFernandezJohannessenetal.2022, author = {Kaap-Deeder, Jolene van der and S{\´a}nchez Fern{\`a}ndez, Alba Cristina and Johannessen, Maria Regine Aasland and Stenseng, Frode and Saksvik-Lehouillier, Ingvild and Heißel, Andreas}, title = {The validation of the Norwegian basic psychological need satisfaction and frustration scale: a stratified sampling procedure}, series = {Frontiers in psychology}, volume = {13}, journal = {Frontiers in psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2022.1032006}, pages = {11}, year = {2022}, abstract = {This study aimed to validate the Norwegian version of the Basic Psychological Need Satisfaction and Frustration Scale (BPNSFS) and to examine its relations with indicators of well-being and ill-being. Additionally, despite the vast number of studies employing the BPNSFS, norms related to the BPNSFS are currently lacking. Therefore, we also aimed to provide normative data for this scale. Data were collected among a representative sample of 326 participants (M age = 42.90 years, SD = 14.76; range 18-70) in Norway, of which 49.7\% was female. Results yielded evidence for a six-factor structure (i.e., combining satisfaction/frustration with the type of need) and showed the subscales to be highly reliable. Subsequent structural equation modeling showed that both need satisfaction and need frustration related strongly to vitality, life satisfaction, and internalizing symptoms, but in opposite ways. Norm scores were provided, thereby differentiating between women and men and different age groups. These findings support the use of the Norwegian BPNSFS and provide researchers and professionals with normative data on the most widely used tool to assess individuals' satisfaction and frustration of the basic psychological needs for autonomy, competence, and relatedness.}, language = {en} } @article{OuerguiDelleliBouassidaetal.2021, author = {Ouergui, Ibrahim and Delleli, Slaheddine and Bouassida, Anissa and Bouhlel, Ezdine and Chaabene, Helmi and Ardig{\`o}, Luca Paolo and Franchini, Emerson}, title = {Technical-tactical analysis of small combat games in male kickboxers}, series = {BMC Sports Science, Medicine and Rehabilitation}, journal = {BMC Sports Science, Medicine and Rehabilitation}, number = {13}, publisher = {Springer Nature}, address = {Berlin}, issn = {2052-1847}, doi = {10.1186/s13102-021-00391-0}, pages = {8}, year = {2021}, abstract = {Background: To handle the competition demands, sparring drills are used for specific technical-tactical training as well as physical-physiological conditioning in combat sports. While the effects of different area sizes and number of within-round sparring partners on physiological and perceptive responses in combats sports were examined in previous studies, technical and tactical aspects were not investigated. This study investigated the effect of different within-round sparring partners number (i.e., at a time; 1 vs. 1, 1 vs. 2, and 1 vs. 4) and area sizes (2 m × 2 m, 4 m × 4 m, and 6 m × 6 m) variation on the technical-tactical aspects of small combat games in kickboxing. Method: Twenty male kickboxers (mean ± standard deviation, age: 20.3 ± 0.9 years), regularly competing in regional and national events randomly performed nine different kickboxing combats, lasting 2 min each. All combats were video recorded and analyzed using the software Dartfish. Results: Results showed that the total number of punches was significantly higher in 1 versus 4 compared with 1 versus 1 (p = 0.011, d = 0.83). Further, the total number of kicks was significantly higher in 1 versus 4 compared with 1 versus 1 and 1 versus 2 (p < 0.001; d = 0.99 and d = 0.83, respectively). Moreover, the total number of kick combinations was significantly higher in 1 versus 4 compared with 1 versus 1 and 1 versus 2 (p < 0.001; d = 1.05 and d = 0.95, respectively). The same outcome was significantly lower in 2 m × 2 m compared with 4 m × 4 m and 6 m × 6 m areas (p = 0.010 and d = - 0.45; p < 0.001 and d = - 0.6, respectively). The number of block-and-parry was significantly higher in 1 versus 4 compared with 1 versus 1 (p < 0.001, d = 1.45) and 1 versus 2 (p = 0.046, d = 0.61) and in 2 m × 2 m compared with 4 m × 4 m and 6 × 6 m areas (p < 0.001; d = 0.47 and d = 0.66, respectively). Backwards lean actions occurred more often in 2 m × 2 m compared with 4 m × 4 m (p = 0.009, d = 0.53) and 6 m × 6 m (p = 0.003, d = 0.60). However, the number of foot defenses was significantly lower in 2 m × 2 m compared with 6 m × 6 m (p < 0.001, d = 1.04) and 4 m × 4 m (p = 0.004, d = 0.63). Additionally, the number of clinches was significantly higher in 1 versus 1 compared with 1 versus 2 (p = 0.002, d = 0.7) and 1 versus 4 (p = 0.034, d = 0.45). Conclusions: This study provides practical insights into how to manipulate within-round sparring partners' number and/or area size to train specific kickboxing technical-tactical fundamentals.}, language = {en} } @article{ApelVorogushynMerz2022, author = {Apel, Heiko and Vorogushyn, Sergiy and Merz, Bruno}, title = {Brief communication: impact forecasting could substantially improve the emergency management of deadly floods: case study July 2021 floods in Germany}, series = {Natural hazards and earth system sciences}, volume = {22}, journal = {Natural hazards and earth system sciences}, number = {9}, publisher = {European Geophysical Society}, address = {Katlenburg-Lindau}, issn = {1561-8633}, doi = {10.5194/nhess-22-3005-2022}, pages = {3005 -- 3014}, year = {2022}, abstract = {Floods affect more people than any other natural hazard; thus flood warning and disaster management are of utmost importance. However, the operational hydrological forecasts do not provide information about affected areas and impact but only discharge and water levels at gauges. We show that a simple hydrodynamic model operating with readily available data is able to provide highly localized information on the expected flood extent and impacts, with simulation times enabling operational flood warning. We demonstrate that such an impact forecast would have indicated the deadly potential of the 2021 flood in western Germany with sufficient lead time.}, language = {en} } @article{WandtWinkelbeinerBornhorstetal.2021, author = {Wandt, Viktoria Klara Veronika and Winkelbeiner, Nicola Lisa and Bornhorst, Julia and Witt, Barbara and Raschke, Stefanie and Simon, Luise and Ebert, Franziska and Kipp, Anna Patricia and Schwerdtle, Tanja}, title = {A matter of concern}, series = {Redox Biology}, volume = {41}, journal = {Redox Biology}, publisher = {Elsevier}, address = {Amsterdam}, issn = {2213-2317}, doi = {10.1016/j.redox.2021.101877}, pages = {13}, year = {2021}, abstract = {Neurons are post-mitotic cells in the brain and their integrity is of central importance to avoid neurodegeneration. Yet, the inability of self-replenishment of post-mitotic cells results in the need to withstand challenges from numerous stressors during life. Neurons are exposed to oxidative stress due to high oxygen consumption during metabolic activity in the brain. Accordingly, DNA damage can occur and accumulate, resulting in genome instability. In this context, imbalances in brain trace element homeostasis are a matter of concern, especially regarding iron, copper, manganese, zinc, and selenium. Although trace elements are essential for brain physiology, excess and deficient conditions are considered to impair neuronal maintenance. Besides increasing oxidative stress, DNA damage response and repair of oxidative DNA damage are affected by trace elements. Hence, a balanced trace element homeostasis is of particular importance to safeguard neuronal genome integrity and prevent neuronal loss. This review summarises the current state of knowledge on the impact of deficient, as well as excessive iron, copper, manganese, zinc, and selenium levels on neuronal genome stability}, language = {en} } @article{WarschburgerPetersenvonRezorietal.2021, author = {Warschburger, Petra and Petersen, Ann-Christin and von Rezori, Roman Enzio and Buchallik, Friederike and Baumeister, Harald and Holl, Reinhard and Minden, Kirsten and M{\"u}ller-​Stierlin, Annabel Sandra and Reinauer, Christina and Staab, Doris and COACH consortium,}, title = {A prospective investigation of developmental trajectories of psychosocial adjustment in adolescents facing a chronic condition - study protocol of an observational, multi-center study}, series = {BMC Pediatrics}, volume = {21}, journal = {BMC Pediatrics}, publisher = {BMC pediatrics}, address = {London}, issn = {1471-2431}, doi = {10.1186/s12887-021-02869-9}, pages = {1 -- 13}, year = {2021}, abstract = {Background Relatively little is known about protective factors and the emergence and maintenance of positive outcomes in the field of adolescents with chronic conditions. Therefore, the primary aim of the study is to acquire a deeper understanding of the dynamic process of resilience factors, coping strategies and psychosocial adjustment of adolescents living with chronic conditions. Methods/design We plan to consecutively recruit N = 450 adolescents (12-21 years) from three German patient registries for chronic conditions (type 1 diabetes, cystic fibrosis, or juvenile idiopathic arthritis). Based on screening for anxiety and depression, adolescents are assigned to two parallel groups - "inconspicuous" (PHQ-9 and GAD-7 < 7) vs. "conspicuous" (PHQ-9 or GAD-7 ≥ 7) - participating in a prospective online survey at baseline and 12-month follow-up. At two time points (T1, T2), we assess (1) intra- and interpersonal resiliency factors, (2) coping strategies, and (3) health-related quality of life, well-being, satisfaction with life, anxiety and depression. Using a cross-lagged panel design, we will examine the bidirectional longitudinal relations between resiliency factors and coping strategies, psychological adaptation, and psychosocial adjustment. To monitor Covid-19 pandemic effects, participants are also invited to take part in an intermediate online survey. Discussion The study will provide a deeper understanding of adaptive, potentially modifiable processes and will therefore help to develop novel, tailored interventions supporting a positive adaptation in youths with a chronic condition. These strategies should not only support those at risk but also promote the maintenance of a successful adaptation. Trial registration German Clinical Trials Register (DRKS), no. DRKS00025125. Registered on May 17, 2021.}, language = {en} } @article{PuertoValenciaArampatzisBecketal.2021, author = {Puerto Valencia, Laura Maria and Arampatzis, Adamantios and Beck, Heidrun and Dreinh{\"o}fer, Karsten E. and Drießlein, Drießlein and Mau, Wilfried and Zimmer, Julia-Marie and Sch{\"a}fer, Michael and Steinfeldt, Friedemann and Wippert, Pia-Maria}, title = {RENaBack: low back pain patients in rehabilitation: study Protocol for a multicenter, randomized controlled trial}, series = {Trials}, journal = {Trials}, publisher = {Springer Nature / BMC}, address = {Heidelberg}, issn = {1745-6215}, doi = {10.1186/s13063-021-05823-3}, pages = {1 -- 18}, year = {2021}, abstract = {Background Millions of people in Germany suffer from chronic pain, in which course and intensity are multifactorial. Besides physical injuries, certain psychosocial risk factors are involved in the disease process. The national health care guidelines for the diagnosis and treatment of non-specific low back pain recommend the screening of psychosocial risk factors as early as possible, to be able to adapt the therapy to patient needs (e.g., unimodal or multimodal). However, such a procedure has been difficult to implement in practice and has not yet been integrated into the rehabilitation care structures across the country. Methods The aim of this study is to implement an individualized therapy and aftercare program within the rehabilitation offer of the German Pension Insurance in the area of orthopedics and to examine its success and sustainability in comparison to the previous standard aftercare program. The study is a multicenter randomized controlled trial including 1204 patients from six orthopedic rehabilitation clinics. A 2:1 allocation ratio to intervention (individualized and home-based rehabilitation aftercare) versus the control group (regular outpatient rehabilitation aftercare) is set. Upon admission to the rehabilitation clinic, participants in the intervention group will be screened according to their psychosocial risk profile. They could then receive either unimodal or multimodal, together with an individualized training program. The program is instructed in the clinic (approximately 3 weeks) and will continue independently at home afterwards for 3 months. The success of the program is examined by means of a total of four surveys. The co-primary outcomes are the Characteristic Pain Intensity and Disability Score assessed by the German version of the Chronic Pain Grade questionnaire (CPG). Discussion An improvement in terms of pain, work ability, patient compliance, and acceptance in our intervention program compared to the standard aftercare is expected. The study contributes to provide individualized care also to patients living far away from clinical centers. Trial registration DRKS, DRKS00020373. Registered on 15 April 2020}, language = {en} } @article{MarimonTarterHofmannVerissimoetal.2021, author = {Marimon Tarter, Mireia and Hofmann, Andrea and Ver{\´i}ssimo, Joao Marques and M{\"a}nnel, Claudia and Friederici, Angela Dorkas and H{\"o}hle, Barbara and Wartenburger, Isabell}, title = {Children's Learning of Non-adjacent Dependencies Using a Web-Based Computer Game Setting}, series = {Frontiers in Psychology}, volume = {12}, journal = {Frontiers in Psychology}, publisher = {Frontiers}, address = {Lausanne, Schweiz}, issn = {1664-1078}, doi = {10.3389/fpsyg.2021.734877}, pages = {1 -- 15}, year = {2021}, abstract = {Infants show impressive speech decoding abilities and detect acoustic regularities that highlight the syntactic relations of a language, often coded via non-adjacent dependencies (NADs, e.g., is singing). It has been claimed that infants learn NADs implicitly and associatively through passive listening and that there is a shift from effortless associative learning to a more controlled learning of NADs after the age of 2 years, potentially driven by the maturation of the prefrontal cortex. To investigate if older children are able to learn NADs, Lammertink et al. (2019) recently developed a word-monitoring serial reaction time (SRT) task and could show that 6-11-year-old children learned the NADs, as their reaction times (RTs) increased then they were presented with violated NADs. In the current study we adapted their experimental paradigm and tested NAD learning in a younger group of 52 children between the age of 4-8 years in a remote, web-based, game-like setting (whack-a-mole). Children were exposed to Italian phrases containing NADs and had to monitor the occurrence of a target syllable, which was the second element of the NAD. After exposure, children did a "Stem Completion" task in which they were presented with the first element of the NAD and had to choose the second element of the NAD to complete the stimuli. Our findings show that, despite large variability in the data, children aged 4-8 years are sensitive to NADs; they show the expected differences in r RTs in the SRT task and could transfer the NAD-rule in the Stem Completion task. We discuss these results with respect to the development of NAD dependency learning in childhood and the practical impact and limitations of collecting these data in a web-based setting.}, language = {en} } @article{BaritelloSalzwedelSuendermannetal.2021, author = {Baritello, Omar and Salzwedel, Annett and S{\"u}ndermann, Simon and Niebauer, Josef and V{\"o}ller, Heinz}, title = {The Pandora's Box of frailty assessments: Which is the best for clinical purposes in TAVI patients? A critical review}, series = {Journal of Clinical Medicine}, volume = {10}, journal = {Journal of Clinical Medicine}, edition = {19}, publisher = {MDPI}, address = {Basel}, issn = {2077-0383}, doi = {10.3390/jcm10194506}, pages = {1 -- 17}, year = {2021}, abstract = {Frailty assessment is recommended before elective transcatheter aortic valve implantation (TAVI) to determine post-interventional prognosis. Several studies have investigated frailty in TAVI-patients using numerous assessments; however, it remains unclear which is the most appropriate tool for clinical practice. Therefore, we evaluate which frailty assessment is mainly used and meaningful for ≤30-day and ≥1-year prognosis in TAVI patients. Randomized controlled or observational studies (prospective/retrospective) investigating all-cause mortality in older (≥70 years) TAVI patients were identified (PubMed; May 2020). In total, 79 studies investigating frailty with 49 different assessments were included. As single markers of frailty, mostly gait speed (23 studies) and serum albumin (16 studies) were used. Higher risk of 1-year mortality was predicted by slower gait speed (highest Hazard Ratios (HR): 14.71; 95\% confidence interval (CI) 6.50-33.30) and lower serum albumin level (highest HR: 3.12; 95\% CI 1.80-5.42). Composite indices (five items; seven studies) were associated with 30-day (highest Odds Ratio (OR): 15.30; 95\% CI 2.71-86.10) and 1-year mortality (highest OR: 2.75; 95\% CI 1.55-4.87). In conclusion, single markers of frailty, in particular gait speed, were widely used to predict 1-year mortality. Composite indices were appropriate, as well as a comprehensive assessment of frailty. View Full-Text}, language = {en} } @article{RaatzPirhoferWalzlMuelleretal.2021, author = {Raatz, Larissa and Pirhofer-Walzl, Karin and M{\"u}ller, Marina E.H. and Scherber, Christoph and Joshi, Jasmin Radha}, title = {Who is the culprit: Is pest infestation responsible for crop yield losses close to semi-natural habitats?}, series = {Ecology and Evolution}, volume = {11}, journal = {Ecology and Evolution}, edition = {19}, publisher = {Wiley-Blackwell}, address = {Oxford}, issn = {2045-7758}, doi = {10.1002/ece3.8046}, pages = {13232 -- 13246}, year = {2021}, abstract = {Semi-natural habitats (SNHs) are becoming increasingly scarce in modern agricultural landscapes. This may reduce natural ecosystem services such as pest control with its putatively positive effect on crop production. In agreement with other studies, we recently reported wheat yield reductions at field borders which were linked to the type of SNH and the distance to the border. In this experimental landscape-wide study, we asked whether these yield losses have a biotic origin while analyzing fungal seed and fungal leaf pathogens, herbivory of cereal leaf beetles, and weed cover as hypothesized mediators between SNHs and yield. We established experimental winter wheat plots of a single variety within conventionally managed wheat fields at fixed distances either to a hedgerow or to an in-field kettle hole. For each plot, we recorded the fungal infection rate on seeds, fungal infection and herbivory rates on leaves, and weed cover. Using several generalized linear mixed-effects models as well as a structural equation model, we tested the effects of SNHs at a field scale (SNH type and distance to SNH) and at a landscape scale (percentage and diversity of SNHs within a 1000-m radius). In the dry year of 2016, we detected one putative biotic culprit: Weed cover was negatively associated with yield values at a 1-m and 5-m distance from the field border with a SNH. None of the fungal and insect pests, however, significantly affected yield, neither solely nor depending on type of or distance to a SNH. However, the pest groups themselves responded differently to SNH at the field scale and at the landscape scale. Our findings highlight that crop losses at field borders may be caused by biotic culprits; however, their negative impact seems weak and is putatively reduced by conventional farming practices.}, language = {en} } @article{SorgenfreiGiangrisostomiKuehnetal.2022, author = {Sorgenfrei, Nomi and Giangrisostomi, Erika and K{\"u}hn, Danilo and Ovsyannikov, Ruslan and F{\"o}hlisch, Alexander}, title = {Time and angle-resolved time-of-flight electron spectroscopy for functional materials science}, series = {Molecules : a journal of synthetic chemistry and natural product chemistry}, volume = {27}, journal = {Molecules : a journal of synthetic chemistry and natural product chemistry}, number = {24}, publisher = {MDPI}, address = {Basel}, issn = {1420-3049}, doi = {10.3390/molecules27248833}, pages = {14}, year = {2022}, abstract = {Electron spectroscopy with the unprecedented transmission of angle-resolved time-of-flight detection, in combination with pulsed X-ray sources, brings new impetus to functional materials science. We showcase recent developments towards chemical sensitivity from electron spectroscopy for chemical analysis and structural information from photoelectron diffraction using the phase transition properties of 1T-TaS2. Our development platform is the SurfaceDynamics instrument located at the Femtoslicing facility at BESSY II, where femtosecond and picosecond X-ray pulses can be generated and extracted. The scientific potential is put into perspective to the current rapidly developing pulsed X-ray source capabilities from Lasers and Free-Electron Lasers.}, language = {en} } @article{SariatiZouhalHammamietal.2021, author = {Sariati, Dorsaf and Zouhal, Hassane and Hammami, Raouf and Clark, Cain Craig Truman and Nebigh, Ammar and Chtara, Moktar and Hackney, Anthony C. and Souissi, Nizar and Granacher, Urs and Ben Ounis, Omar}, title = {Association between mental imagery and change of direction performance in young elite soccer players of different maturity status}, series = {Frontiers in Psychology}, volume = {12}, journal = {Frontiers in Psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2021.665508}, pages = {9}, year = {2021}, abstract = {Previous studies have not considered the potential influence of maturity status on the relationship between mental imagery and change of direction (CoD) speed in youth soccer. Accordingly, this cross-sectional study examined the association between mental imagery and CoD performance in young elite soccer players of different maturity status. Forty young male soccer players, aged 10-17 years, were assigned into two groups according to their predicted age at peak height velocity (PHV) (Pre-PHV; n = 20 and Post-PHV; n = 20). Participants were evaluated on soccer-specific tests of CoD with (CoDBall-15m) and without (CoD-15m) the ball. Participants completed the movement imagery questionnaire (MIQ) with the three- dimensional structure, internal visual imagery (IVI), external visual imagery (EVI), as well as kinesthetic imagery (KI). The Post-PHV players achieved significantly better results than Pre-PHV in EVI (ES = 1.58, large; p < 0.001), CoD-15m (ES = 2.09, very large; p < 0.001) and CoDBall-15m (ES = 1.60, large; p < 0.001). Correlations were significantly different between maturity groups, where, for the pre-PHV group, a negative very large correlation was observed between CoDBall-15m and KI (r = -0.73, p = 0.001). For the post-PHV group, large negative correlations were observed between CoD-15m and IVI (r = -0.55, p = 0.011), EVI (r = -062, p = 0.003), and KI (r = -0.52, p = 0.020). A large negative correlation of CoDBall-15m with EVI (r = -0.55, p = 0.012) and very large correlation with KI (r = -0.79, p = 0.001) were also observed. This study provides evidence of the theoretical and practical use for the CoD tasks stimulus with imagery. We recommend that sport psychology specialists, coaches, and athletes integrated imagery for CoD tasks in pre-pubertal soccer players to further improve CoD related performance.}, language = {en} } @article{HauffeRathSchelletal.2021, author = {Hauffe, Robert and Rath, Michaela and Schell, Mareike and Ritter, Katrin and Kappert, Kai and Deubel, Stefanie and Ott, Christiane and J{\"a}hnert, Markus and Jonas, Wenke and Sch{\"u}rmann, Annette and Kleinridders, Andr{\´e}}, title = {HSP60 reduction protects against diet-induced obesity by modulating energy metabolism in adipose tissue}, series = {Molecular metabolism : official journal of the German Center for Diabetes Research (DZD)}, volume = {53}, journal = {Molecular metabolism : official journal of the German Center for Diabetes Research (DZD)}, publisher = {Elsevier}, address = {Oxford [u.a.]}, issn = {2212-8778}, doi = {10.1016/j.molmet.2021.101276}, pages = {1 -- 14}, year = {2021}, abstract = {Objective Insulin regulates mitochondrial function, thereby propagating an efficient metabolism. Conversely, diabetes and insulin resistance are linked to mitochondrial dysfunction with a decreased expression of the mitochondrial chaperone HSP60. The aim of this investigation was to determine the effect of a reduced HSP60 expression on the development of obesity and insulin resistance. Methods Control and heterozygous whole-body HSP60 knockout (Hsp60+/-) mice were fed a high-fat diet (HFD, 60\% calories from fat) for 16 weeks and subjected to extensive metabolic phenotyping. To understand the effect of HSP60 on white adipose tissue, microarray analysis of gonadal WAT was performed, ex vivo experiments were performed, and a lentiviral knockdown of HSP60 in 3T3-L1 cells was conducted to gain detailed insights into the effect of reduced HSP60 levels on adipocyte homeostasis. Results Male Hsp60+/- mice exhibited lower body weight with lower fat mass. These mice exhibited improved insulin sensitivity compared to control, as assessed by Matsuda Index and HOMA-IR. Accordingly, insulin levels were significantly reduced in Hsp60+/- mice in a glucose tolerance test. However, Hsp60+/- mice exhibited an altered adipose tissue metabolism with elevated insulin-independent glucose uptake, adipocyte hyperplasia in the presence of mitochondrial dysfunction, altered autophagy, and local insulin resistance. Conclusions We discovered that the reduction of HSP60 in mice predominantly affects adipose tissue homeostasis, leading to beneficial alterations in body weight, body composition, and adipocyte morphology, albeit exhibiting local insulin resistance.}, language = {en} } @article{SpikesRodriguezSilvaBennettetal.2021, author = {Spikes, Montrai and Rodr{\´i}guez-Silva, Rodet and Bennett, Kerri-Ann and Br{\"a}ger, Stefan and Josaphat, James and Torres-Pineda, Patricia and Ernst, Anja and Havenstein, Katja and Schlupp, Ingo and Tiedemann, Ralph}, title = {A phylogeny of the genus Limia (Teleostei: Poeciliidae) suggests a single-lake radiation nested in a Caribbean-wide allopatric speciation scenario}, series = {BMC Research Notes}, volume = {14}, journal = {BMC Research Notes}, publisher = {BMC Research Notes / Biomed Central}, address = {London}, issn = {1756-0500}, doi = {10.1186/s13104-021-05843-x}, pages = {1 -- 8}, year = {2021}, abstract = {Objective The Caribbean is an important global biodiversity hotspot. Adaptive radiations there lead to many speciation events within a limited period and hence are particularly prominent biodiversity generators. A prime example are freshwater fish of the genus Limia, endemic to the Greater Antilles. Within Hispaniola, nine species have been described from a single isolated site, Lake Mirago{\^a}ne, pointing towards extraordinary sympatric speciation. This study examines the evolutionary history of the Limia species in Lake Mirago{\^a}ne, relative to their congeners throughout the Caribbean. Results For 12 Limia species, we obtained almost complete sequences of the mitochondrial cytochrome b gene, a well-established marker for lower-level taxonomic relationships. We included sequences of six further Limia species from GenBank (total N  = 18 species). Our phylogenies are in concordance with other published phylogenies of Limia. There is strong support that the species found in Lake Mirago{\^a}ne in Haiti are monophyletic, confirming a recent local radiation. Within Lake Mirago{\^a}ne, speciation is likely extremely recent, leading to incomplete lineage sorting in the mtDNA. Future studies using multiple unlinked genetic markers are needed to disentangle the relationships within the Lake Mirago{\^a}ne clade.}, language = {en} } @article{RoseGroegerHoelzle2021, author = {Rose, Robert and Groeger, Lars and H{\"o}lzle, Katharina}, title = {The emergence of shared leadership in innovation labs}, series = {Frontiers in Psychology}, volume = {12}, journal = {Frontiers in Psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2021.685167}, pages = {1 -- 13}, year = {2021}, abstract = {Implementing innovation laboratories to leverage intrapreneurship are an increasingly popular organizational practice. A typical feature in these creative environments are semi-autonomous teams in which multiple members collectively exert leadership influence, thereby challenging traditional command-and-control conceptions of leadership. An extensive body of research on the team-centric concept of shared leadership has recognized the potential for pluralized leadership structures in enhancing team effectiveness; however, little empirical work has been conducted in organizational contexts in which creativity is key. This study set out to explore antecedents of shared leadership and its influence on team creativity in an innovation lab. Building on extant shared leadership and innovation research, we propose antecedents customary to creative teamwork, that is, experimental culture, task reflexivity, and voice. Multisource data were collected from 104 team members and 49 evaluations of 29 coaches nested in 21 teams working in a prototypical innovation lab. We identify factors specific to creative teamwork that facilitate the emergence of shared leadership by providing room for experimentation, encouraging team members to speak up in the creative process, and cultivating a reflective application of entrepreneurial thinking. We provide specific exemplary activities for innovation lab teams to increase levels of shared leadership.}, language = {en} } @article{KasmiZouhalHammamietal.2021, author = {Kasmi, Sofien and Zouhal, Hassane and Hammami, Raouf and Clark, Cain Craig Truman and Hackney, Anthony C. and Hammami, Amri and Chtara, Moktar and Chortane, Sabri Gaied and Ben Salah, Fatma Zohra and Granacher, Urs and Ben Ounis, Omar}, title = {The effects of eccentric and plyometric training programs and their combination on stability and the functional performance in the post-ACL-surgical rehabilitation period of elite female athletes}, series = {Frontiers in physiology}, volume = {12}, journal = {Frontiers in physiology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-042X}, doi = {10.3389/fphys.2021.688385}, pages = {11}, year = {2021}, abstract = {Background: The standard method to treat physically active patients with anterior cruciate ligament (ACL) rupture is ligament reconstruction surgery. The rehabilitation training program is very important to improve functional performance in recreational athletes following ACL reconstruction. Objectives: The aims of this study were to compare the effects of three different training programs, eccentric training (ECC), plyometric training (PLYO), or combined eccentric and plyometric training (COMB), on dynamic balance (Y-BAL), the Lysholm Knee Scale (LKS), the return to sport index (RSI), and the leg symmetry index (LSI) for the single leg hop test for distance in elite female athletes after ACL surgery. Materials and Methods: Fourteen weeks after rehabilitation from surgery, 40 elite female athletes (20.3 ± 3.2 years), who had undergone an ACL reconstruction, participated in a short-term (6 weeks; two times a week) training study. All participants received the same rehabilitation protocol prior to the training study. Athletes were randomly assigned to three experimental groups, ECC (n = 10), PLYO (n = 10), and COMB (n = 10), and to a control group (CON: n = 10). Testing was conducted before and after the 6-week training programs and included the Y-BAL, LKS, and RSI. LSI was assessed after the 6-week training programs only. Results: Adherence rate was 100\% across all groups and no training or test-related injuries were reported. No significant between-group baseline differences (pre-6-week training) were observed for any of the parameters. Significant group-by-time interactions were found for Y-BAL (p < 0.001, ES = 1.73), LKS (p < 0.001, ES = 0.76), and RSI (p < 0.001, ES = 1.39). Contrast analysis demonstrated that COMB yielded significantly greater improvements in Y-BAL, LKS, and RSI (all p < 0.001), in addition to significantly better performances in LSI (all p < 0.001), than CON, PLYO, and ECC, respectively. Conclusion: In conclusion, combined (eccentric/plyometric) training seems to represent the most effective training method as it exerts positive effects on both stability and functional performance in the post-ACL-surgical rehabilitation period of elite female athletes.}, language = {en} } @article{ScharnweberAnderssonChaguacedaetal.2021, author = {Scharnweber, Inga Kristin and Andersson, Matilda L. and Chaguaceda, Fernando and Ekl{\"o}v, Peter}, title = {Intraspecific differences in metabolic rates shape carbon stable isotope trophic discrimination factors of muscle tissue in the common teleost Eurasian perch (Perca fluviatilis)}, series = {Ecology and evolution}, volume = {11}, journal = {Ecology and evolution}, number = {14}, publisher = {John Wiley \& Sons, Inc.}, address = {New Jersey}, issn = {2045-7758}, doi = {10.1002/ece3.7809}, pages = {9804 -- 9814}, year = {2021}, abstract = {Stable isotopes represent a unique approach to provide insights into the ecology of organisms. δ13C and δ15N have specifically been used to obtain information on the trophic ecology and food-web interactions. Trophic discrimination factors (TDF, Δ13C and Δ15N) describe the isotopic fractionation occurring from diet to consumer tissue, and these factors are critical for obtaining precise estimates within any application of δ13C and δ15N values. It is widely acknowledged that metabolism influences TDF, being responsible for different TDF between tissues of variable metabolic activity (e.g., liver vs. muscle tissue) or species body size (small vs. large). However, the connection between the variation of metabolism occurring within a single species during its ontogeny and TDF has rarely been considered. Here, we conducted a 9-month feeding experiment to report Δ13C and Δ15N of muscle and liver tissues for several weight classes of Eurasian perch (Perca fluviatilis), a widespread teleost often studied using stable isotopes, but without established TDF for feeding on a natural diet. In addition, we assessed the relationship between the standard metabolic rate (SMR) and TDF by measuring the oxygen consumption of the individuals. Our results showed a significant negative relationship of SMR with Δ13C, and a significant positive relationship of SMR with Δ15N of muscle tissue, but not with TDF of liver tissue. SMR varies inversely with size, which translated into a significantly different TDF of muscle tissue between size classes. In summary, our results emphasize the role of metabolism in shaping-specific TDF (i.e., Δ13C and Δ15N of muscle tissue) and especially highlight the substantial differences between individuals of different ontogenetic stages within a species. Our findings thus have direct implications for the use of stable isotope data and the applications of stable isotopes in food-web studies.}, language = {en} } @article{LeverMayerMetjeetal.2021, author = {Lever, Fabiano and Mayer, Dennis and Metje, Jan and Alisauskas, Skirmantas and Calegari, Francesca and D{\"u}sterer, Stefan and Feifel, Raimund and Niebuhr, Mario and Manschwetus, Bastian and Kuhlmann, Marion and Mazza, Tommaso and Robinson, Matthew Scott and Squibb, Richard J. and Trabattoni, Andrea and Wallner, M{\aa}ns and Wolf, Thomas J. A. and G{\"u}hr, Markus}, title = {Core-level spectroscopy of 2-thiouracil at the sulfur L1 and L2,3 edges utilizing a SASE free-electron-laser}, series = {Molecules}, volume = {26}, journal = {Molecules}, number = {21}, publisher = {MDPI}, address = {Basel}, issn = {1420-3049}, doi = {10.3390/molecules26216469}, pages = {11}, year = {2021}, abstract = {In this paper, we report X-ray absorption and core-level electron spectra of the nucleobase derivative 2-thiouracil at the sulfur L1- and L2,3-edges. We used soft X-rays from the free-electron laser FLASH2 for the excitation of isolated molecules and dispersed the outgoing electrons with a magnetic bottle spectrometer. We identified photoelectrons from the 2p core orbital, accompanied by an electron correlation satellite, as well as resonant and non-resonant Coster-Kronig and Auger-Meitner emission at the L1- and L2,3-edges, respectively. We used the electron yield to construct X-ray absorption spectra at the two edges. The experimental data obtained are put in the context of the literature currently available on sulfur core-level and 2-thiouracil spectroscopy.}, language = {en} } @article{DechBittmannSchaefer2021, author = {Dech, Silas and Bittmann, Frank and Schaefer, Laura}, title = {Muscle oxygenation level might trigger the regulation of capillary venous blood filling during fatiguing isometric muscle actions}, series = {Diagnostics}, volume = {11}, journal = {Diagnostics}, number = {11}, publisher = {MDPI}, address = {Basel}, issn = {2075-4418}, doi = {10.3390/diagnostics11111973}, pages = {17}, year = {2021}, abstract = {The regulation of oxygen and blood supply during isometric muscle actions is still unclear. Recently, two behavioral types of oxygen saturation (SvO2) and relative hemoglobin amount (rHb) in venous microvessels were described during a fatiguing holding isometric muscle action (HIMA) (type I: nearly parallel behavior of SvO2 and rHb; type II: partly inverse behavior). The study aimed to ascertain an explanation of these two regulative behaviors. Twelve subjects performed one fatiguing HIMA trial with each arm by weight holding at 60\% of the maximal voluntary isometric contraction (MVIC) in a 90° elbow flexion. Six subjects additionally executed one fatiguing PIMA trial by pulling on an immovable resistance with 60\% of the MVIC with each side and same position. Both regulative types mentioned were found during HIMA (I: n = 7, II: n = 17) and PIMA (I: n = 3, II: n = 9). During the fatiguing measurements, rHb decreased initially and started to increase in type II at an average SvO2-level of 58.75 ± 2.14\%. In type I, SvO2 never reached that specific value during loading. This might indicate the existence of a threshold around 59\% which seems to trigger the increase in rHb and could explain the two behavioral types. An approach is discussed to meet the apparent incompatibility of an increased capillary blood filling (rHb) despite high intramuscular pressures which were found by other research groups during isometric muscle actions.}, language = {en} } @article{KabothBahrBahrStepaneketal.2021, author = {Kaboth-Bahr, Stefanie and Bahr, Andr{\´e} and Stepanek, Christian and Catunda, Maria Carolina Amorim and Karas, Cyrus and Ziegler, Martin and Garc{\´i}a-Gallardo, {\´A}ngela and Grunert, Patrick}, title = {Mediterranean heat injection to the North Atlantic delayed the intensification of Northern Hemisphere glaciations}, series = {Communications Earth \& Environment}, journal = {Communications Earth \& Environment}, publisher = {Springer Nature}, address = {London}, issn = {2662-4435}, doi = {10.1038/s43247-021-00232-5}, pages = {1 -- 9}, year = {2021}, abstract = {The intensification of Northern Hemisphere glaciations at the end of the Pliocene epoch marks one of the most substantial climatic shifts of the Cenozoic. Despite global cooling, sea surface temperatures in the high latitude North Atlantic Ocean rose between 2.9-2.7 million years ago. Here we present sedimentary geochemical proxy data from the Gulf of Cadiz to reconstruct the variability of Mediterranean Outflow Water, an important heat source to the North Atlantic. We find evidence for enhanced production of Mediterranean Outflow from the mid-Pliocene to the late Pliocene which we infer could have driven a sub-surface heat channel into the high-latitude North Atlantic. We then use Earth System Models to constrain the impact of enhanced Mediterranean Outflow production on the northward heat transport in the North Atlantic. In accord with the proxy data, the numerical model results support the formation of a sub-surface channel that pumped heat from the subtropics into the high latitude North Atlantic. We further suggest that this mechanism could have delayed ice sheet growth at the end of the Pliocene.}, language = {en} } @article{SeeligRisseEngbert2021, author = {Seelig, Stefan and Risse, Sarah and Engbert, Ralf}, title = {Predictive modeling of parafoveal information processing during reading}, series = {Scientific Reports}, volume = {11}, journal = {Scientific Reports}, publisher = {Springer Nature}, address = {Berlin}, issn = {2045-2322}, doi = {10.1038/s41598-021-92140-z}, pages = {9}, year = {2021}, abstract = {Skilled reading requires information processing of the fixated and the not-yet-fixated words to generate precise control of gaze. Over the last 30 years, experimental research provided evidence that word processing is distributed across the perceptual span, which permits recognition of the fixated (foveal) word as well as preview of parafoveal words to the right of fixation. However, theoretical models have been unable to differentiate the specific influences of foveal and parafoveal information on saccade control. Here we show how parafoveal word difficulty modulates spatial and temporal control of gaze in a computational model to reproduce experimental results. In a fully Bayesian framework, we estimated model parameters for different models of parafoveal processing and carried out large-scale predictive simulations and model comparisons for a gaze-contingent reading experiment. We conclude that mathematical modeling of data from gaze-contingent experiments permits the precise identification of pathways from parafoveal information processing to gaze control, uncovering potential mechanisms underlying the parafoveal contribution to eye-movement control.}, language = {en} } @article{MusculusTuenteRaabetal.2021, author = {Musculus, Lisa and T{\"u}nte, Markus R. and Raab, Markus and Kayhan, Ezgi}, title = {An embodied cognition perspective on the role of interoception in the development of the minimal self}, series = {Frontiers in Psychology}, volume = {12}, journal = {Frontiers in Psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2021.716950}, pages = {7}, year = {2021}, abstract = {Interoception is an often neglected but crucial aspect of the human minimal self. In this perspective, we extend the embodiment account of interoceptive inference to explain the development of the minimal self in humans. To do so, we first provide a comparative overview of the central accounts addressing the link between interoception and the minimal self. Grounding our arguments on the embodiment framework, we propose a bidirectional relationship between motor and interoceptive states, which jointly contribute to the development of the minimal self. We present empirical findings on interoception in development and discuss the role of interoception in the development of the minimal self. Moreover, we make theoretical predictions that can be tested in future experiments. Our goal is to provide a comprehensive view on the mechanisms underlying the minimal self by explaining the role of interoception in the development of the minimal self.}, language = {en} } @article{RamachandranSinghRamirezCampilloetal.2021, author = {Ramachandran, Akhilesh Kumar and Singh, Utkarsh and Ramirez-Campillo, Rodrigo and Clemente, Filipe Manuel and Afonso, Jos{\´e} and Granacher, Urs}, title = {Effects of Plyometric Jump Training on Balance Performance in Healthy Participants: A Systematic Review With Meta-Analysis / Effects of plyometric-jump training on balance performance in healthy individuals across the lifespan: A systematic review with meta-analysisist}, series = {Frontiers in Physiology}, volume = {12}, journal = {Frontiers in Physiology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-042X}, doi = {10.3389/fphys.2021.730945}, pages = {22}, year = {2021}, abstract = {Postural balance represents a fundamental movement skill for the successful performance of everyday and sport-related activities. There is ample evidence on the effectiveness of balance training on balance performance in athletic and non-athletic population. However, less is known on potential transfer effects of other training types, such as plyometric jump training (PJT) on measures of balance. Given that PJT is a highly dynamic exercise mode with various forms of jump-landing tasks, high levels of postural control are needed to successfully perform PJT exercises. Accordingly, PJT has the potential to not only improve measures of muscle strength and power but also balance. To systematically review and synthetize evidence from randomized and non-randomized controlled trials regarding the effects of PJT on measures of balance in apparently healthy participants. Systematic literature searches were performed in the electronic databases PubMed, Web of Science, and SCOPUS. A PICOS approach was applied to define inclusion criteria, (i) apparently healthy participants, with no restrictions on their fitness level, sex, or age, (ii) a PJT program, (iii) active controls (any sport-related activity) or specific active controls (a specific exercise type such as balance training), (iv) assessment of dynamic, static balance pre- and post-PJT, (v) randomized controlled trials and controlled trials. The methodological quality of studies was assessed using the Physiotherapy Evidence Database (PEDro) scale. This meta-analysis was computed using the inverse variance random-effects model. The significance level was set at p <0.05. The initial search retrieved 8,251 plus 23 records identified through other sources. Forty-two articles met our inclusion criteria for qualitative and 38 for quantitative analysis (1,806 participants [990 males, 816 females], age range 9-63 years). PJT interventions lasted between 4 and 36 weeks. The median PEDro score was 6 and no study had low methodological quality (≤3). The analysis revealed significant small effects of PJT on overall (dynamic and static) balance (ES = 0.46; 95\% CI = 0.32-0.61; p < 0.001), dynamic (e.g., Y-balance test) balance (ES = 0.50; 95\% CI = 0.30-0.71; p < 0.001), and static (e.g., flamingo balance test) balance (ES = 0.49; 95\% CI = 0.31-0.67; p < 0.001). The moderator analyses revealed that sex and/or age did not moderate balance performance outcomes. When PJT was compared to specific active controls (i.e., participants undergoing balance training, whole body vibration training, resistance training), both PJT and alternative training methods showed similar effects on overall (dynamic and static) balance (p = 0.534). Specifically, when PJT was compared to balance training, both training types showed similar effects on overall (dynamic and static) balance (p = 0.514). Conclusion: Compared to active controls, PJT showed small effects on overall balance, dynamic and static balance. Additionally, PJT produced similar balance improvements compared to other training types (i.e., balance training). Although PJT is widely used in athletic and recreational sport settings to improve athletes' physical fitness (e.g., jumping; sprinting), our systematic review with meta-analysis is novel in as much as it indicates that PJT also improves balance performance. The observed PJT-related balance enhancements were irrespective of sex and participants' age. Therefore, PJT appears to be an adequate training regime to improve balance in both, athletic and recreational settings.}, language = {en} } @article{JulienMatthiasSaynischWagneretal.2022, author = {Julien, B{\"a}renzung and Matthias, Holschneider and Saynisch-Wagner, Jan and Thomas, Maik}, title = {Kalmag: a high spatio-temporal model of the geomagnetic field}, series = {Earth, planets and space}, volume = {74}, journal = {Earth, planets and space}, number = {1}, publisher = {Springer}, address = {New York}, issn = {1880-5981}, doi = {10.1186/s40623-022-01692-5}, pages = {22}, year = {2022}, abstract = {We present the extension of the Kalmag model, proposed as a candidate for IGRF-13, to the twentieth century. The dataset serving its derivation has been complemented by new measurements coming from satellites, ground-based observatories and land, marine and airborne surveys. As its predecessor, this version is derived from a combination of a Kalman filter and a smoothing algorithm, providing mean models and associated uncertainties. These quantities permit a precise estimation of locations where mean solutions can be considered as reliable or not. The temporal resolution of the core field and the secular variation was set to 0.1 year over the 122 years the model is spanning. Nevertheless, it can be shown through ensembles a posteriori sampled, that this resolution can be effectively achieved only by a limited amount of spatial scales and during certain time periods. Unsurprisingly, highest accuracy in both space and time of the core field and the secular variation is achieved during the CHAMP and Swarm era. In this version of Kalmag, a particular effort was made for resolving the small-scale lithospheric field. Under specific statistical assumptions, the latter was modeled up to spherical harmonic degree and order 1000, and signal from both satellite and survey measurements contributed to its development. External and induced fields were jointly estimated with the rest of the model. We show that their large scales could be accurately extracted from direct measurements whenever the latter exhibit a sufficiently high temporal coverage. Temporally resolving these fields down to 3 hours during the CHAMP and Swarm missions, gave us access to the link between induced and magnetospheric fields. In particular, the period dependence of the driving signal on the induced one could be directly observed. The model is available through various physical and statistical quantities on a dedicated website at https://ionocovar.agnld.uni-potsdam.de/Kalmag/.}, language = {en} } @article{CahsanKiemelWestburyetal.2021, author = {Cahsan, Binia De and Kiemel, Katrin and Westbury, Michael V. and Lauritsen, Maike and Autenrieth, Marijke and Gollmann, G{\"u}nter and Schweiger, Silke and Stenberg, Marika and Nystr{\"o}m, Per and Drews, Hauke and Tiedemann, Ralph}, title = {Southern introgression increases adaptive immune gene variability in northern range margin populations of Fire-bellied toad}, series = {Ecology and Evolution}, volume = {11}, journal = {Ecology and Evolution}, number = {14}, publisher = {John Wiley \& Sons, Inc.}, address = {New Jersey}, issn = {2045-7758}, doi = {10.1002/ece3.7805}, pages = {15}, year = {2021}, abstract = {Northern range margin populations of the European fire-bellied toad (Bombina bombina) have rapidly declined during recent decades. Extensive agricultural land use has fragmented the landscape, leading to habitat disruption and loss, as well as eutrophication of ponds. In Northern Germany (Schleswig-Holstein) and Southern Sweden (Sk{\aa}ne), this population decline resulted in decreased gene flow from surrounding populations, low genetic diversity, and a putative reduction in adaptive potential, leaving populations vulnerable to future environmental and climatic changes. Previous studies using mitochondrial control region and nuclear transcriptome-wide SNP data detected introgressive hybridization in multiple northern B. bombina populations after unreported release of toads from Austria. Here, we determine the impact of this introgression by comparing the body conditions (proxy for fitness) of introgressed and nonintrogressed populations and the genetic consequences in two candidate genes for putative local adaptation (the MHC II gene as part of the adaptive immune system and the stress response gene HSP70 kDa). We detected regional differences in body condition and observed significantly elevated levels of within individual MHC allele counts in introgressed Swedish populations, associated with a tendency toward higher body weight, relative to regional nonintrogressed populations. These differences were not observed among introgressed and nonintrogressed German populations. Genetic diversity in both MHC and HSP was generally lower in northern than Austrian populations. Our study sheds light on the potential benefits of translocations of more distantly related conspecifics as a means to increase adaptive genetic variability and fitness of genetically depauperate range margin populations without distortion of local adaptation.}, language = {en} } @article{MalchowBocediPalmeretal.2021, author = {Malchow, Anne-Kathleen and Bocedi, Greta and Palmer, Stephen C. F. and Travis, Justin M. J. and Zurell, Damaris}, title = {RangeShiftR: an R package for individual-based simulation of spatial eco-evolutionary dynamics and speciesu0027 responses to environmental changes}, series = {Ecography}, volume = {44}, journal = {Ecography}, number = {10}, publisher = {John Wiley \& Sons, Inc.}, address = {New Jersey}, issn = {1600-0587}, doi = {10.1111/ecog.05689}, pages = {10}, year = {2021}, abstract = {Reliably modelling the demographic and distributional responses of a species to environmental changes can be crucial for successful conservation and management planning. Process-based models have the potential to achieve this goal, but so far they remain underused for predictions of species' distributions. Individual-based models offer the additional capability to model inter-individual variation and evolutionary dynamics and thus capture adaptive responses to environmental change. We present RangeShiftR, an R implementation of a flexible individual-based modelling platform which simulates eco-evolutionary dynamics in a spatially explicit way. The package provides flexible and fast simulations by making the software RangeShifter available for the widely used statistical programming platform R. The package features additional auxiliary functions to support model specification and analysis of results. We provide an outline of the package's functionality, describe the underlying model structure with its main components and present a short example. RangeShiftR offers substantial model complexity, especially for the demographic and dispersal processes. It comes with elaborate tutorials and comprehensive documentation to facilitate learning the software and provide help at all levels. As the core code is implemented in C++, the computations are fast. The complete source code is published under a public licence, making adaptations and contributions feasible. The RangeShiftR package facilitates the application of individual-based and mechanistic modelling to eco-evolutionary questions by operating a flexible and powerful simulation model from R. It allows effortless interoperation with existing packages to create streamlined workflows that can include data preparation, integrated model specification and results analysis. Moreover, the implementation in R strengthens the potential for coupling RangeShiftR with other models.}, language = {en} } @article{CahsanWestburyParaskevopoulouetal.2021, author = {Cahsan, Binia De and Westbury, Michael V. and Paraskevopoulou, Sofia and Drews, Hauke and Ott, Moritz and Gollmann, G{\"u}nter and Tiedemann, Ralph}, title = {Genomic consequences of human-mediated translocations in margin populations of an endangered amphibian}, series = {Evolutionary Applications}, volume = {14}, journal = {Evolutionary Applications}, number = {6}, publisher = {John Wiley \& Sons, Inc.}, address = {New Jersey}, issn = {1752-4563}, doi = {10.1111/eva.13229}, pages = {12}, year = {2021}, abstract = {Due to their isolated and often fragmented nature, range margin populations are especially vulnerable to rapid environmental change. To maintain genetic diversity and adaptive potential, gene flow from disjunct populations might therefore be crucial to their survival. Translocations are often proposed as a mitigation strategy to increase genetic diversity in threatened populations. However, this also includes the risk of losing locally adapted alleles through genetic swamping. Human-mediated translocations of southern lineage specimens into northern German populations of the endangered European fire-bellied toad (Bombina bombina) provide an unexpected experimental set-up to test the genetic consequences of an intraspecific introgression from central population individuals into populations at the species range margin. Here, we utilize complete mitochondrial genomes and transcriptome nuclear data to reveal the full genetic extent of this translocation and the consequences it may have for these populations. We uncover signs of introgression in four out of the five northern populations investigated, including a number of introgressed alleles ubiquitous in all recipient populations, suggesting a possible adaptive advantage. Introgressed alleles dominate at the MTCH2 locus, associated with obesity/fat tissue in humans, and the DSP locus, essential for the proper development of epidermal skin in amphibians. Furthermore, we found loci where local alleles were retained in the introgressed populations, suggesting their relevance for local adaptation. Finally, comparisons of genetic diversity between introgressed and nonintrogressed northern German populations revealed an increase in genetic diversity in all German individuals belonging to introgressed populations, supporting the idea of a beneficial transfer of genetic variation from Austria into North Germany.}, language = {en} } @article{CodecoWeisAndersen2022, author = {Code{\c{c}}o, Marta S. and Weis, Philipp and Andersen, Christine}, title = {Numerical modeling of structurally controlled ore formation in magmatic-hydrothermal systems}, series = {Geochemistry, geophysics, geosystems : G 3 ; an electronic journal of the earth sciences}, volume = {23}, journal = {Geochemistry, geophysics, geosystems : G 3 ; an electronic journal of the earth sciences}, number = {8}, publisher = {American Geophysical Union}, address = {Washington, DC}, issn = {1525-2027}, doi = {10.1029/2021GC010302}, pages = {20}, year = {2022}, abstract = {Faults and fractures can be permeable pathways for focused fluid flow in structurally controlled ore-forming hydrothermal systems. However, quantifying their role in fluid flow on the scale of several kilometers with numerical models typically requires high-resolution meshes. This study introduces a modified numerical representation of m-scale fault zones using lower-dimensional elements (here, one-dimensional [1D] elements in a 2D domain) to resolve structurally controlled fluid flow with coarser mesh resolutions and apply the method to magmatic-hydrothermal ore-forming systems. We modeled horizontal and vertical structure-controlled magmatic-hydrothermal deposits to understand the role of permeability and structure connectivity on ore deposition. The simulation results of vertically extended porphyry copper systems show that ore deposition can occur along permeable vertical structures where ascending, overpressured magmatic fluids are cooled by downflowing ambient fluids. Structure permeability and fault location control the distribution of ore grades. In highly permeable structures, the mineralization can span up to 3 km vertically, resulting in heat-pipe mechanisms that promote the ascent of a magmatic vapor phase to an overlying structurally controlled epithermal system. Simulations for the formation of subhorizontal vein-type deposits suggest that the major control on fluid flow and metal deposition along horizontal structures is the absence of vertical structures above the injection location but their presence at greater distances. Using a dynamic permeability model mimicking crack-seal mechanisms within the structures leads to a pulsating behavior of fracture-controlled hydrothermal systems and prevents the inflow of ambient fluids under overpressured conditions.}, language = {en} } @article{AraziAsadiKhalkhalietal.2020, author = {Arazi, Hamid and Asadi, Abbas and Khalkhali, Farhood and Boullosa, Daniel and Hackney, Anthony C. and Granacher, Urs and Zouhal, Hassane}, title = {Association Between the Acute to Chronic Workload Ratio and Injury Occurrence in Young Male Team Soccer Players}, series = {Frontiers in Physiology}, volume = {11}, journal = {Frontiers in Physiology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-042X}, doi = {10.3389/fphys.2020.00608}, pages = {7}, year = {2020}, abstract = {This study aimed to investigate the relationship between the acute to chronic workload ratio (ACWR), based upon participant session rating of perceived exertion (sRPE), using two models [(1) rolling averages (ACWRRA); and (2) exponentially weighted moving averages (ACWREWMA)] and the injury rate in young male team soccer players aged 17.1 ± 0.7 years during a competitive mesocycle. Twenty-two players were enrolled in this study and performed four training sessions per week with 2 days of recovery and 1 match day per week. During each training session and each weekly match, training time and sRPE were recorded. In addition, training impulse (TRIMP), monotony, and strain were subsequently calculated. The rate of injury was recorded for each soccer player over a period of 4 weeks (i.e., 28 days) using a daily questionnaire. The results showed that over the course of the study, the number of non-contact injuries was significantly higher than that for contact injuries (2.5 vs. 0.5, p = 0.01). There were also significant positive correlations between sRPE and training time (r = 0.411, p = 0.039), ACWRRA (r = 0.47, p = 0.049), and ACWREWMA (r = 0.51, p = 0.038). In addition, small-to-medium correlations were detected between ACWR and non-contact injury occurrence (ACWRRA, r = 0.31, p = 0.05; ACWREWMA, r = 0.53, p = 0.03). Explained variance (r 2) for non-contact injury was significantly greater using the ACWREWMA model (ranging between 21 and 52\%) compared with ACWRRA (ranging between 17 and 39\%). In conclusion, the results of this study showed that the ACWREWMA model is more sensitive than ACWRRA to identify non-contact injury occurrence in male team soccer players during a short period in the competitive season.}, language = {en} } @article{LipusJiaBartholomaeusetal.2022, author = {Lipus, Daniel and Jia, Zeyu and Bartholom{\"a}us, Alexander and Burckhardt, Oliver and Sondermann, Megan and Wagner, Dirk and Kallmeyer, Jens}, title = {Circular metagenome-assembled genome of Methanobacterium sp. strain ERen5, a putative methanogenic, H2-utilizing terrestrial subsurface archaeon}, series = {Microbiology Resource Announcements}, volume = {11}, journal = {Microbiology Resource Announcements}, number = {10}, publisher = {American Society for Microbiology}, address = {Washington}, issn = {2576-098X}, doi = {10.1128/mra.00676-22}, pages = {2}, year = {2022}, abstract = {A circular, single-contig Methanobacterium sp. metagenome-assembled genome (MAG) was recovered from high-CO2 enrichments inoculated with drill core material from the tectonic Eger Rift terrestrial subsurface. Annotation of the recovered MAG highlighted putative methanogenesis genes, providing valuable information on archaeal activity in the deep biosphere.}, language = {en} } @article{BartholomaeusMitzscherlingLipusetal.2022, author = {Bartholom{\"a}us, Alexander and Mitzscherling, Julia and Lipus, Daniel and MacLean, Joana and Wagner, Dirk}, title = {Draft genome sequence of Paenalcaligenes niemegkensis NGK35T, isolated from plastic-polluted soil of an abandoned landfill}, series = {Microbiology Resource Announcements}, volume = {11}, journal = {Microbiology Resource Announcements}, number = {10}, publisher = {American Society for Microbiology}, address = {Washington}, issn = {2576-098X}, doi = {10.1128/mra.00671-22}, pages = {2}, year = {2022}, abstract = {The Gram-negative bacterium Paenalcaligenes niemegkensis NGK35(T) was isolated from plastic debris in an abandoned landfill. It has the ability to grow on polyethylene and hexadecane as the sole carbon sources. Here, we report the corresponding draft genome, which contains 3.66 Mbp and is characterized by a G+C content of 52.1\%.}, language = {en} } @article{TaboriSchneiderLuethetal.2022, author = {Tabori, Harold and Schneider, Jochen and L{\"u}th, Stefan and Zagoya, Carlos and Barucha, Anton and Lehmann, Thomas and Kauf, Eberhard and Barth, Astrid and Mainz, Jochen G.}, title = {Elevated levels of toxic bile acids in serum of cystic fibrosis patients with CFTR mutations causing pancreatic insufficiency}, series = {International journal of molecular sciences}, volume = {23}, journal = {International journal of molecular sciences}, number = {20}, publisher = {MDPI}, address = {Basel}, issn = {1422-0067}, doi = {10.3390/ijms232012436}, pages = {16}, year = {2022}, abstract = {Hepatobiliary involvement is a hallmark in cystic fibrosis (CF), as the causative CF Transmembrane Conductance Regulator (CFTR) defect is expressed in the biliary tree. However, bile acid (BA) compositions in regard to pancreatic insufficiency, which is present at an early stage in about 85\% of CF patients, have not been satisfactorily understood. We assess the pattern of serum BAs in people with CF (pwCF) without CFTR modulator therapy in regard to pancreatic insufficiency and the CFTR genotype. In 47 pwCF, 10 free and 12 taurine- and glycine-conjugated BAs in serum were prospectively assessed. Findings were related to genotype, pancreatic insufficiency prevalence (PIP)-score, and hepatic involvement indicated by serum liver enzymes, as well as clinical and ultrasound criteria for CF-related liver disease. Serum concentrations of total primary BAs and free cholic acid (CA) were significantly higher in pwCF with higher PIP-scores (p = 0.025, p = 0.009, respectively). Higher total BAs were seen in pwCF with PIP-scores >= 0.88 (p = 0.033) and with pancreatic insufficiency (p = 0.034). Free CA was higher in patients with CF-related liver involvement without cirrhosis, compared to pwCF without liver disease (2.3-fold, p = 0.036). pwCF with severe CFTR genotypes, as assessed by the PIP-score, reveals more toxic BA compositions in serum. Subsequent studies assessing changes in BA homeostasis during new highly effective CFTR-modulating therapies are of high interest.}, language = {en} } @article{DattaMorassiSassoKiwitetal.2022, author = {Datta, Suparno and Morassi Sasso, Ariane and Kiwit, Nina and Bose, Subhronil and Nadkarni, Girish and Miotto, Riccardo and B{\"o}ttinger, Erwin P.}, title = {Predicting hypertension onset from longitudinal electronic health records with deep learning}, series = {JAMIA Open}, volume = {5}, journal = {JAMIA Open}, number = {4}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {2574-2531}, doi = {10.1093/jamiaopen/ooac097}, pages = {10}, year = {2022}, abstract = {Objective: Hypertension has long been recognized as one of the most important predisposing factors for cardiovascular diseases and mortality. In recent years, machine learning methods have shown potential in diagnostic and predictive approaches in chronic diseases. Electronic health records (EHRs) have emerged as a reliable source of longitudinal data. The aim of this study is to predict the onset of hypertension using modern deep learning (DL) architectures, specifically long short-term memory (LSTM) networks, and longitudinal EHRs. Materials and Methods: We compare this approach to the best performing models reported from previous works, particularly XGboost, applied to aggregated features. Our work is based on data from 233 895 adult patients from a large health system in the United States. We divided our population into 2 distinct longitudinal datasets based on the diagnosis date. To ensure generalization to unseen data, we trained our models on the first dataset (dataset A "train and validation") using cross-validation, and then applied the models to a second dataset (dataset B "test") to assess their performance. We also experimented with 2 different time-windows before the onset of hypertension and evaluated the impact on model performance. Results: With the LSTM network, we were able to achieve an area under the receiver operating characteristic curve value of 0.98 in the "train and validation" dataset A and 0.94 in the "test" dataset B for a prediction time window of 1 year. Lipid disorders, type 2 diabetes, and renal disorders are found to be associated with incident hypertension. Conclusion: These findings show that DL models based on temporal EHR data can improve the identification of patients at high risk of hypertension and corresponding driving factors. In the long term, this work may support identifying individuals who are at high risk for developing hypertension and facilitate earlier intervention to prevent the future development of hypertension.}, language = {en} } @article{MuecksteinHeinzelGranacheretal.2022, author = {M{\"u}ckstein, Marie and Heinzel, Stephan and Granacher, Urs and Brahms, Markus and Rapp, Michael A. and Stelzel, Christine}, title = {Modality-specific effects of mental fatigue in multitasking}, series = {Acta psychologica : international journal of psychonomics}, volume = {230}, journal = {Acta psychologica : international journal of psychonomics}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0001-6918}, doi = {10.1016/j.actpsy.2022.103766}, pages = {12}, year = {2022}, abstract = {The mechanisms underlying increased dual-task costs in the comparison of modality compatible stimulus -response mappings (e.g., visual-manual, auditory-vocal) and modality incompatible mappings (e.g., visual -vocal, auditory-manual) remain elusive. To investigate whether additional control mechanisms are at work in simultaneously processing two modality incompatible mappings, we applied a transfer logic between both types of dual-task mappings in the context of a mental fatigue induction. We expected an increase in dual-task costs for both modality mappings after a fatigue induction with modality compatible tasks. In contrast, we expected an additional, selective increase in modality incompatible dual-task costs after a fatigue induction with modality incompatible tasks. We tested a group of 45young individuals (19-30 years) in an online pre-post design, in which participants were assigned to one of three groups. The two fatigue groups completed a 90-min time-on -task intervention with a dual task comprising either compatible or incompatible modality mappings. The third group paused for 90 min as a passive control group. Pre and post-session contained single and dual tasks in both modality mappings for all participants. In addition to behavioral performance measurements, seven subjective items (effort, focus, subjective fatigue, motivation, frustration, mental and physical capacity) were analyzed. Mean dual-task performance during and after the intervention indicated a practice effect instead of the presumed fatigue effect for all three groups. The modality incompatible intervention group showed a selective performance improvement for the modality incompatible mapping but no transfer to the modality compatible dual task. In contrast, the compatible intervention group showed moderately improved performance in both modality map-pings. Still, participants reported increased subjective fatigue and reduced motivation after the fatigue inter-vention. This dynamic interplay of training and fatigue effects suggests that high control demands were involved in the prolonged performance of a modality incompatible dual task, which are separable from modality compatible dual-task demands.}, language = {en} } @article{OwoyeleTrujillodeMeloetal.2022, author = {Owoyele, Babajide and Trujillo, James and de Melo, Gerard and Pouw, Wim}, title = {Masked-Piper: masking personal identities in visual recordings while preserving multimodal information}, series = {SoftwareX}, volume = {20}, journal = {SoftwareX}, publisher = {Elsevier}, address = {Amsterdam}, issn = {2352-7110}, doi = {10.1016/j.softx.2022.101236}, pages = {4}, year = {2022}, abstract = {In this increasingly data-rich world, visual recordings of human behavior are often unable to be shared due to concerns about privacy. Consequently, data sharing in fields such as behavioral science, multimodal communication, and human movement research is often limited. In addition, in legal and other non-scientific contexts, privacy-related concerns may preclude the sharing of video recordings and thus remove the rich multimodal context that humans recruit to communicate. Minimizing the risk of identity exposure while preserving critical behavioral information would maximize utility of public resources (e.g., research grants) and time invested in audio-visual research. Here we present an open-source computer vision tool that masks the identities of humans while maintaining rich information about communicative body movements. Furthermore, this masking tool can be easily applied to many videos, leveraging computational tools to augment the reproducibility and accessibility of behavioral research. The tool is designed for researchers and practitioners engaged in kinematic and affective research. Application areas include teaching/education, communication and human movement research, CCTV, and legal contexts.}, language = {en} } @article{GiraudierVenturaBortWendtetal.2022, author = {Giraudier, Manon and Ventura-Bort, Carlos and Wendt, Julia and Lischke, Alexander and Weymar, Mathias}, title = {Memory advantage for untrustworthy faces}, series = {PLoS one}, volume = {17}, journal = {PLoS one}, number = {2}, publisher = {PLoS}, address = {San Fransisco}, issn = {1932-6203}, doi = {10.1371/journal.pone.0264034}, pages = {11}, year = {2022}, abstract = {The Covid-19 pandemic imposed new constraints on empirical research and forced researchers to transfer from traditional laboratory research to the online environment. This study tested the validity of a web-based episodic memory paradigm by comparing participants' memory performance for trustworthy and untrustworthy facial stimuli in a supervised laboratory setting and an unsupervised web setting. Consistent with previous results, we observed enhanced episodic memory for untrustworthy compared to trustworthy faces. Most importantly, this memory bias was comparable in the online and the laboratory experiment, suggesting that web-based procedures are a promising tool for memory research.}, language = {en} } @article{GiraudierVenturaBortWendtetal.2022, author = {Giraudier, Manon and Ventura-Bort, Carlos and Wendt, Julia and Lischke, Alexander and Weymar, Mathias}, title = {Memory advantage for untrustworthy faces: Replication across lab- and web-based studies}, series = {PLoS ONE}, volume = {17}, journal = {PLoS ONE}, edition = {2}, publisher = {PLoS ONE}, address = {San Francisco, California, US}, issn = {1932-6203}, doi = {10.1371/journal.pone.0264034}, pages = {1 -- 11}, year = {2022}, abstract = {The Covid-19 pandemic imposed new constraints on empirical research and forced researchers to transfer from traditional laboratory research to the online environment. This study tested the validity of a web-based episodic memory paradigm by comparing participants' memory performance for trustworthy and untrustworthy facial stimuli in a supervised laboratory setting and an unsupervised web setting. Consistent with previous results, we observed enhanced episodic memory for untrustworthy compared to trustworthy faces. Most importantly, this memory bias was comparable in the online and the laboratory experiment, suggesting that web-based procedures are a promising tool for memory research.}, language = {en} } @article{RikaniFrielerSchewe2022, author = {Rikani, Albano and Frieler, Katja and Schewe, Jacob}, title = {Climate change and international migration}, series = {PLoS one}, volume = {17}, journal = {PLoS one}, number = {11}, publisher = {PLoS}, address = {San Fransisco}, issn = {1932-6203}, doi = {10.1371/journal.pone.0276764}, pages = {25}, year = {2022}, abstract = {International migration patterns, at the global level, can to a large extent be explained through economic factors in origin and destination countries. On the other hand, it has been shown that global climate change is likely to affect economic development over the coming decades. Here, we demonstrate how these future climate impacts on national income levels could alter the global migration landscape. Using an empirically calibrated global migration model, we investigate two separate mechanisms. The first is through destination-country income, which has been shown consistently to have a positive effect on immigration. As countries' income levels relative to each other are projected to change in the future both due to different rates of economic growth and due to different levels of climate change impacts, the relative distribution of immigration across destination countries also changes as a result, all else being equal. Second, emigration rates have been found to have a complex, inverted U-shaped dependence on origin-country income. Given the available migration flow data, it is unclear whether this dependence-found in spatio-temporal panel data-also pertains to changes in a given migration flow over time. If it does, then climate change will additionally affect migration patterns through origin countries' emigration rates, as the relative and absolute positions of countries on the migration "hump" change. We illustrate these different possibilities, and the corresponding effects of 3 degrees C global warming (above pre-industrial) on global migration patterns, using climate model projections and two different methods for estimating climate change effects on macroeconomic development.}, language = {en} } @article{GiraudierVenturaBortBurgeretal.2022, author = {Giraudier, Manon and Ventura-Bort, Carlos and Burger, Andreas M. and Claes, Nathalie and D'Agostini, Martina and Fischer, Rico and Franssen, Mathijs and Kaess, Michael and Koenig, Julian and Liepelt, Roman and Nieuwenhuis, Sander and Sommer, Aldo and Usichenko, Taras and Van Diest, Ilse and von Leupoldt, Andreas and Warren, Christopher Michael and Weymar, Mathias}, title = {Evidence for a modulating effect of transcutaneous auricular vagus nerve stimulation (taVNS) on salivary alpha-amylase as indirect noradrenergic marker: A pooled mega-analysis}, series = {Brain Stimulation}, volume = {15}, journal = {Brain Stimulation}, edition = {6}, publisher = {Elsevier}, address = {New York, NY, USA}, issn = {1876-4754}, doi = {10.1016/j.brs.2022.09.009}, pages = {1378 -- 1388}, year = {2022}, abstract = {Background Non-invasive transcutaneous auricular vagus nerve stimulation (taVNS) has received tremendous attention as a potential neuromodulator of cognitive and affective functions, which likely exerts its effects via activation of the locus coeruleus-noradrenaline (LC-NA) system. Reliable effects of taVNS on markers of LC-NA system activity, however, have not been demonstrated yet. Methods The aim of the present study was to overcome previous limitations by pooling raw data from a large sample of ten taVNS studies (371 healthy participants) that collected salivary alpha-amylase (sAA) as a potential marker of central NA release. Results While a meta-analytic approach using summary statistics did not yield any significant effects, linear mixed model analyses showed that afferent stimulation of the vagus nerve via taVNS increased sAA levels compared to sham stimulation (b = 0.16, SE = 0.05, p = 0.001). When considering potential confounders of sAA, we further replicated previous findings on the diurnal trajectory of sAA activity. Conclusion(s) Vagal activation via taVNS increases sAA release compared to sham stimulation, which likely substantiates the assumption that taVNS triggers NA release. Moreover, our results highlight the benefits of data pooling and data sharing in order to allow stronger conclusions in research.}, language = {en} } @article{GiraudierVenturaBortWeymar2020, author = {Giraudier, Manon and Ventura-Bort, Carlos and Weymar, Mathias}, title = {Transcutaneous Vagus Nerve Stimulation (tVNS) Improves High-Confidence Recognition Memory but Not Emotional Word Processing}, series = {Frontiers in Psychology}, volume = {11}, journal = {Frontiers in Psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2020.01276}, pages = {13}, year = {2020}, abstract = {Previous clinical research found that invasive vagus nerve stimulation (VNS) enhanced word recognition memory in epileptic patients, an effect assumed to be related to the activation of brainstem arousal systems. In this study, we applied non-invasive transcutaneous auricular VNS (tVNS) to replicate and extend the previous work. Using a single-blind, randomized, between-subject design, 60 healthy volunteers received active or sham stimulation during a lexical decision task, in which emotional and neutral stimuli were classified as words or non-words. In a subsequent recognition memory task (1 day after stimulation), participants' memory performance on these words and their subjective memory confidence were tested. Salivary alpha-amylase (sAA) levels, a putative indirect measure of central noradrenergic activation, were also measured before and after stimulation. During encoding, pleasant words were more accurately detected than neutral and unpleasant words. However, no tVNS effects were observed on task performance or on overall sAA level changes. tVNS also did not modulate overall recognition memory, which was particularly enhanced for pleasant emotional words. However, when hit rates were split based on confidence ratings reflecting familiarity- and recollection-based memory, higher recollection-based memory performance (irrespective of emotional category) was observed during active stimulation than during sham stimulation. To summarize, we replicated prior findings of enhanced processing and memory for emotional (pleasant) words. Whereas tVNS showed no effects on word processing, subtle effects on recollection-based memory performance emerged, which may indicate that tVNS facilitates hippocampus-mediated consolidation processes.}, language = {en} } @article{VenturaBortWendtWeymar2021, author = {Ventura-Bort, Carlos and Wendt, Julia and Weymar, Mathias}, title = {The Role of Interoceptive Sensibility and Emotional Conceptualization for the Experience of Emotions}, series = {Frontiers in psychology}, volume = {12}, journal = {Frontiers in psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne, Schweiz}, issn = {1664-1078}, doi = {10.3389/fpsyg.2021.712418}, pages = {1 -- 15}, year = {2021}, abstract = {The theory of constructed emotions suggests that different psychological components, including core affect (mental and neural representations of bodily changes), and conceptualization (meaning-making based on prior experiences and semantic knowledge), are involved in the formation of emotions. However, little is known about their role in experiencing emotions. In the current study, we investigated how individual differences in interoceptive sensibility and emotional conceptualization (as potential correlates of these components) interact to moderate three important aspects of emotional experiences: emotional intensity (strength of emotion felt), arousal (degree of activation), and granularity (ability to differentiate emotions with precision). To this end, participants completed a series of questionnaires assessing interoceptive sensibility and emotional conceptualization and underwent two emotion experience tasks, which included standardized material (emotion differentiation task; ED task) and self-experienced episodes (day reconstruction method; DRM). Correlational analysis showed that individual differences in interoceptive sensibility and emotional conceptualization were related to each other. Principal Component Analysis (PCA) revealed two independent factors that were referred to as sensibility and monitoring. The Sensibility factor, interpreted as beliefs about the accuracy of an individual in detecting internal physiological and emotional states, predicted higher granularity for negative words. The Monitoring factor, interpreted as the tendency to focus on the internal states of an individual, was negatively related to emotional granularity and intensity. Additionally, Sensibility scores were more strongly associated with greater well-being and adaptability measures than Monitoring scores. Our results indicate that independent processes underlying individual differences in interoceptive sensibility and emotional conceptualization contribute to emotion experiencing.}, language = {en} } @article{DiehnSchlaadKneipp2022, author = {Diehn, Sabrina Maria and Schlaad, Helmut and Kneipp, Janina}, title = {Multivariate imaging for fast evaluation of in situ dark field microscopy hyperspectral data}, series = {Molecules : a journal of synthetic chemistry and natural product chemistry}, volume = {27}, journal = {Molecules : a journal of synthetic chemistry and natural product chemistry}, number = {16}, publisher = {MDPI}, address = {Basel}, issn = {1420-3049}, doi = {10.3390/molecules27165146}, pages = {15}, year = {2022}, abstract = {Dark field scattering microscopy can create large hyperspectral data sets that contain a wealth of information on the properties and the molecular environment of noble metal nanoparticles. For a quick screening of samples of microscopic dimensions that contain many different types of plasmonic nanostructures, we propose a multivariate analysis of data sets of thousands to several hundreds of thousands of scattering spectra. By using non-negative matrix factorization for decomposing the spectra, components are identified that represent individual plasmon resonances and relative contributions of these resonances to particular microscopic focal volumes in the mapping data sets. Using data from silver and gold nanoparticles in the presence of different molecules, including gold nanoparticle-protein agglomerates or silver nanoparticles forming aggregates in the presence of acrylamide, plasmonic properties are observed that differ from those of the original nanoparticles. For the case of acrylamide, we show that the plasmon resonances of the silver nanoparticles are ideally suited to support surface enhanced Raman scattering (SERS) and the two-photon excited process of surface enhanced hyper Raman scattering (SEHRS). Both vibrational tools give complementary information on the in situ formed polyacrylamide and the molecular composition at the nanoparticle surface.}, language = {en} } @article{SinghSinha2022, author = {Singh, Manudeo and Sinha, Rajiv}, title = {Integrating hydrological connectivity in a process-response framework for restoration and monitoring prioritisation of floodplain wetlands in the Ramganga Basin, India}, series = {Water}, volume = {14}, journal = {Water}, number = {21}, publisher = {MDPI}, address = {Basel}, issn = {2073-4441}, doi = {10.3390/w14213520}, pages = {22}, year = {2022}, abstract = {Floodplain wetlands are critical for sustaining various ecological and hydrological functions in a riverine environment. Severe anthropogenic alterations and human occupation of floodplains have threatened these wetlands in several parts of the world. A major handicap in designing sustainable restoration and monitoring strategies for these wetlands is the lack of scientific process-based understanding and information on the basin-scale controls of their degradation. Here, we offer a novel approach to integrate the connectivity of the wetlands with the surrounding landscape along with other attributes such as stream density, hydrometeorological parameters, and groundwater dynamics to explain their degradation and then to prioritise them for restoration and monitoring. We hypothesise that the best possible connectivity scenario for the existence of a wetland would be if (a) the wetland has a high connectivity with its upslope area, and (b) the wetland has a low connectivity with its downslope region. The first condition ensures the flow of water into the wetland and the second condition allows longer water residence time in the wetland. Accordingly, we define four connectivity-based wetland health scenarios-good, no impact, bad, and worst. We have implemented the proposed method in 3226 wetlands in the Ramganga Basin in north India. Further, we have applied specific selection criteria, such as distance from the nearest stream and stream density, to prioritise the wetlands for restoration and monitoring. We conclude that the connectivity analysis offers a quick process-based assessment of wetlands' health status and serves as an important criterion to prioritise the wetlands for developing appropriate management strategies.}, language = {en} } @article{RybakovaMuellerOlimietal.2022, author = {Rybakova, Daria and M{\"u}ller, Henry and Olimi, Expedito and Sch{\"a}fer, Angelika and Cernava, Tomislav and Berg, Gabriele}, title = {To defend or to attack? Antagonistic interactions between Serratia plymuthica and fungal plant pathogens, a species-specific volatile dialogue}, series = {Frontiers in sustainable food systems}, volume = {6}, journal = {Frontiers in sustainable food systems}, publisher = {Frontiers Media}, address = {Lausanne}, issn = {2571-581X}, doi = {10.3389/fsufs.2022.1020634}, pages = {14}, year = {2022}, abstract = {Volatile organic compounds (VOCs) are involved in microbial interspecies communication and in the mode of action of various antagonistic interactions. They are important for balancing host-microbe interactions and provide the basis for developing biological control strategies to control plant pathogens. We studied the interactions between the bacterial antagonist Serratia plymuthica HRO-C48 and three fungal plant pathogens Rhizoctonia solani, Leptosphaeria maculans and Verticillium longisporum. Significant differences in fungal growth inhibition by the Serratia-emitted VOCs in pairwise dual culture assays and changes in the transcriptome of the bacterium and in the volatilomes of both interacting partners were observed. Even though the rate of fungal growth inhibition by Serratia was variable, the confrontation of the bacterium with the VOCs of all three fungi changed the levels of expression of the genes involved in stress response, biofilm formation, and the production of antimicrobial VOCs. Pairwise interacting microorganisms switched between defense (downregulation of gene expression) and attack (upregulation of gene expression and metabolism followed by growth inhibition of the interacting partner) modes, subject to the combinations of microorganisms that were interacting. In the attack mode HRO-C48 significantly inhibited the growth of R. solani while simultaneously boosting its own metabolism; by contrast, its metabolism was downregulated when HRO-C48 went into a defense mode that was induced by the L. maculans and V. longisporum VOCs. L. maculans growth was slightly reduced by the one bacterial VOC methyl acetate that induced a strong downregulation of expression of genes involved in almost all metabolic functions in S. plymuthica. Similarly, the interaction between S. plymuthica and V. longisporum resulted in an insignificant growth reduction of the fungus and repressed the rate of bacterial metabolism on the transcriptional level, accompanied by an intense volatile dialogue. Overall, our results indicate that VOCs substantially contribute to the highly break species-specific interactions between pathogens and their natural antagonists and thus deserving of increased consideration for pathogen control.}, language = {en} } @article{HuthSchwarzGorb2022, author = {Huth, Steven and Schwarz, Lisa-Maricia and Gorb, Stanislav N.}, title = {Quantifying the influence of pollen aging on the adhesive properties of Hypochaeris radicata pollen}, series = {Insects}, volume = {13}, journal = {Insects}, number = {9}, publisher = {MDPI}, address = {Basel}, issn = {2075-4450}, doi = {10.3390/insects13090811}, pages = {13}, year = {2022}, abstract = {Simple Summary Pollination is the transfer of pollen from a plant's male part (anther) to the corresponding female part (stigma). It is a fundamental biological process that ensures plant reproduction. Most studies investigate pollination from a biological perspective, but the underlying physical processes are poorly understood. Many plants rely on insects to transport pollen and the forces with which pollen adhere to insects and floral surfaces are fundamental for successful pollination. We quantified pollen adhesion by measuring the forces necessary to detach Hypochaeris radicata (catsear, a common insect-pollinated plant) pollen from glass and studied for the first time how the adhesion forces change with pollen aging. Our results show that newly formed adhesion bonds between H. radicata pollen and glass are stronger for fresh pollen than for old ones. On the other hand, when H. radicata pollen age in contact with glass, the adhesion between pollen and glass strengthens over time. These effects are probably caused by the viscous liquid covering most pollen (pollenkitt) changing its viscoelastic properties as it dries. Although pollination is one of the most crucial biological processes that ensures plant reproduction, its mechanisms are poorly understood. Especially in insect-mediated pollination, a pollen undergoes several attachment and detachment cycles when being transferred from anther to insect and from insect to stigma. The influence of the properties of pollen, insect and floral surfaces on the adhesion forces that mediate pollen transfer have been poorly studied. Here, we investigate the adhesive properties of Hypochaeris radicata pollen and their dependence on pollen aging by quantifying the pull-off forces from glass slides using centrifugation and atomic force microscopy. We found that the properties of the pollenkitt-the viscous, lipid liquid on the surface of most pollen grains-influences the forces necessary to detach a pollen from hydrophilic surfaces. Our results show that aged H. radicata pollen form weaker adhesions to hydrophilic glass than fresh ones. On the other hand, when a pollen grain ages in contact with glass, the adhesion between the two surfaces increases over time. This study shows for the first time the pollen aging effect on the pollination mechanism.}, language = {en} } @article{HeinrichBalanzateguiBensetal.2018, author = {Heinrich, Ingo and Balanzategui, Daniel and Bens, Oliver and Blasch, Gerald and Blume, Theresa and Boettcher, Falk and Borg, Erik and Brademann, Brian and Brauer, Achim and Conrad, Christopher and Dietze, Elisabeth and Dr{\"a}ger, Nadine and Fiener, Peter and Gerke, Horst H. and G{\"u}ntner, Andreas and Heine, Iris and Helle, Gerhard and Herbrich, Marcus and Harfenmeister, Katharina and Heussner, Karl-Uwe and Hohmann, Christian and Itzerott, Sibylle and Jurasinski, Gerald and Kaiser, Knut and Kappler, Christoph and Koebsch, Franziska and Liebner, Susanne and Lischeid, Gunnar and Merz, Bruno and Missling, Klaus Dieter and Morgner, Markus and Pinkerneil, Sylvia and Plessen, Birgit and Raab, Thomas and Ruhtz, Thomas and Sachs, Torsten and Sommer, Michael and Spengler, Daniel and Stender, Vivien and St{\"u}ve, Peter and Wilken, Florian}, title = {Interdisciplinary Geo-ecological Research across Time Scales in the Northeast German Lowland Observatory (TERENO-NE)}, series = {Vadose zone journal}, volume = {17}, journal = {Vadose zone journal}, number = {1}, publisher = {Soil Science Society of America}, address = {Madison}, issn = {1539-1663}, doi = {10.2136/vzj2018.06.0116}, pages = {25}, year = {2018}, abstract = {The Northeast German Lowland Observatory (TERENO-NE) was established to investigate the regional impact of climate and land use change. TERENO-NE focuses on the Northeast German lowlands, for which a high vulnerability has been determined due to increasing temperatures and decreasing amounts of precipitation projected for the coming decades. To facilitate in-depth evaluations of the effects of climate and land use changes and to separate the effects of natural and anthropogenic drivers in the region, six sites were chosen for comprehensive monitoring. In addition, at selected sites, geoarchives were used to substantially extend the instrumental records back in time. It is this combination of diverse disciplines working across different time scales that makes the observatory TERENO-NE a unique observation platform. We provide information about the general characteristics of the observatory and its six monitoring sites and present examples of interdisciplinary research activities at some of these sites. We also illustrate how monitoring improves process understanding, how remote sensing techniques are fine-tuned by the most comprehensive ground-truthing site DEMMIN, how soil erosion dynamics have evolved, how greenhouse gas monitoring of rewetted peatlands can reveal unexpected mechanisms, and how proxy data provides a long-term perspective of current ongoing changes.}, language = {en} } @article{PuppeWannerSommer2018, author = {Puppe, Daniel and Wanner, Manfred and Sommer, Michael}, title = {Data on euglyphid testate amoeba densities, corresponding protozoic silicon pools, and selected soil parameters of initial and forested biogeosystems}, series = {Data in brief}, volume = {21}, journal = {Data in brief}, publisher = {Elsevier}, address = {Amsterdam}, issn = {2352-3409}, doi = {10.1016/j.dib.2018.10.164}, pages = {1697 -- 1703}, year = {2018}, abstract = {The dataset in the present article provides information on protozoic silicon (Si) pools represented by euglyphid testate amoebae (TA) in soils of initial and forested biogeosystems. Protozoic Si pools were calculated from densities of euglyphid TA shells and corresponding Si contents. The article also includes data on potential annual biosilicification rates of euglyphid TA at the examined sites. Furthermore, data on selected soil parameters (e.g., readily-available Si, soil pH) and site characteristics (e.g., soil groups, climate data) can be found. The data might be interesting for researchers focusing on biological processes in Si cycling in general and euglyphid TA and corresponding protozoic Si pools in particular.}, language = {en} } @article{FilipovicGerkeFilipovicetal.2018, author = {Filipovic, Vilim and Gerke, Horst H. and Filipovic, Lana and Sommer, Michael}, title = {Quantifying subsurface lateral flow along sloping horizon boundaries in soil profiles of a hummocky ground moraine}, series = {Vadose zone journal}, volume = {17}, journal = {Vadose zone journal}, number = {1}, publisher = {Soil Science Society of America}, address = {Madison}, issn = {1539-1663}, doi = {10.2136/vzj2017.05.0106}, pages = {12}, year = {2018}, abstract = {Subsurface lateral flow in hillslope soils depends on lower permeability or texture-contrasting soil horizons. In the arable hummocky soil landscape, erosion processes caused glacial till appearance closer to the soil surface at upslope positions. The objective of this work was to quantify the potential for subsurface lateral flow depending on the erosion-affected spatial hydropedological complexity. The eroded Haplic Luvisol profile was studied due to the presence of a relatively dense C horizon that varied in depth, thickness, and sloping angle. A two-dimensional numerical modeling and sensitivity analysis for the saturated hydraulic conductivity (K-s) of the C horizon and the depth to C horizon (i.e., soil solum thickness) was performed for rainstorms in 2011 and 2012 using HYDRUS-2D. A K-s value of <2.5 cm d(-1) for the C horizon was required for lateral flow initiation. Lateral flow was (i) increasing with decreasing solum thickness, indicating an erosion-induced feedback on subsurface lateral flow, and (ii) dependent on the soil moisture regime prior to rainstorms. The effect of lateral flow on the movement of a conservative tracer was simulated in the form of a "virtual experiment". Simulation scenarios revealed only a relatively small lateral shift of the tracer plume caused by a local decoupling of water (already lateral) from subsequent tracer movement (still vertical). Longer term simulations suggested that, for the present conditions, lateral flow was limited mostly to occasional summer storm events. Even without considering preferential flow contribution to lateral flow, highly complex hydropedologic interactions are present in erosion-affected heterogeneous soil profiles.}, language = {en} } @article{PalmaVeraReyerLanghammeretal.2022, author = {Palma-Vera, Sergio E. and Reyer, Henry and Langhammer, Martina and Reinsch, Norbert and Derezanin, Lorena and Fickel, J{\"o}rns and Qanbari, Saber and Weitzel, Joachim M. and Franzenburg, Soeren and Hemmrich-Stanisak, Georg and Sch{\"o}n, Jennifer}, title = {Genomic characterization of the world's longest selection experiment in mouse reveals the complexity of polygenic traits}, series = {BMC Biology}, volume = {20}, journal = {BMC Biology}, number = {1}, publisher = {BMC}, address = {London}, issn = {1741-7007}, doi = {10.1186/s12915-022-01248-9}, pages = {20}, year = {2022}, abstract = {Background Long-term selection experiments are a powerful tool to understand the genetic background of complex traits. The longest of such experiments has been conducted in the Research Institute for Farm Animal Biology (FBN), generating extreme mouse lines with increased fertility, body mass, protein mass and endurance. For >140 generations, these lines have been maintained alongside an unselected control line, representing a valuable resource for understanding the genetic basis of polygenic traits. However, their history and genomes have not been reported in a comprehensive manner yet. Therefore, the aim of this study is to provide a summary of the breeding history and phenotypic traits of these lines along with their genomic characteristics. We further attempt to decipher the effects of the observed line-specific patterns of genetic variation on each of the selected traits. Results Over the course of >140 generations, selection on the control line has given rise to two extremely fertile lines (>20 pups per litter each), two giant growth lines (one lean, one obese) and one long-distance running line. Whole genome sequencing analysis on 25 animals per line revealed line-specific patterns of genetic variation among lines, as well as high levels of homozygosity within lines. This high degree of distinctiveness results from the combined effects of long-term continuous selection, genetic drift, population bottleneck and isolation. Detection of line-specific patterns of genetic differentiation and structural variation revealed multiple candidate genes behind the improvement of the selected traits. Conclusions The genomes of the Dummerstorf trait-selected mouse lines display distinct patterns of genomic variation harbouring multiple trait-relevant genes. Low levels of within-line genetic diversity indicate that many of the beneficial alleles have arrived to fixation alongside with neutral alleles. This study represents the first step in deciphering the influence of selection and neutral evolutionary forces on the genomes of these extreme mouse lines and depicts the genetic complexity underlying polygenic traits.}, language = {en} } @article{HouZhaoZhangetal.2022, author = {Hou, Xindong and Zhao, Jian and Zhang, Hucai and Preick, Michaela and Hu, Jiaming and Xiao, Bo and Wang, Linying and Deng, Miaoxuan and Liu, Sizhao and Chang, Fengqin and Sheng, Guilian and Lai, Xulong and Hofreiter, Michael and Yuan, Junxia}, title = {Paleogenomes reveal a complex evolutionary history of late Pleistocene bison in Northeastern China}, series = {Genes}, volume = {13}, journal = {Genes}, number = {10}, publisher = {MDPI}, address = {Basel}, issn = {2073-4425}, doi = {10.3390/genes13101684}, pages = {16}, year = {2022}, abstract = {Steppe bison are a typical representative of the Mid-Late Pleistocene steppes of the northern hemisphere. Despite the abundance of fossil remains, many questions related to their genetic diversity, population structure and dispersal route are still elusive. Here, we present both near-complete and partial mitochondrial genomes, as well as a partial nuclear genome from fossil bison samples excavated from Late Pleistocene strata in northeastern China. Maximum-likelihood and Bayesian trees both suggest the bison clade are divided into three maternal haplogroups (A, B and C), and Chinese individuals fall in two of them. Bayesian analysis shows that the split between haplogroup C and the ancestor of haplogroups A and B dates at 326 ky BP (95\% HPD: 397-264 ky BP). In addition, our nuclear phylogenomic tree also supports a basal position for the individual carrying haplogroup C. Admixture analyses suggest that CADG467 (haplogroup C) has a similar genetic structure to steppe bison from Siberia (haplogroup B). Our new findings indicate that the genetic diversity of Pleistocene bison was probably even higher than previously thought and that northeastern Chinese populations of several mammalian species, including Pleistocene bison, were genetically distinct.}, language = {en} } @article{PopescuChitoran2022, author = {Popescu, Anisia and Chitoran, Ioana}, title = {Linking gestural representations to syllable count judgments}, series = {Laboratory Phonology}, volume = {13}, journal = {Laboratory Phonology}, number = {1}, publisher = {Open Library of Humanities}, issn = {1868-6346}, doi = {10.16995/labphon.7681}, pages = {1 -- 48}, year = {2022}, abstract = {A special class of English words with tense vowel/diphthong nuclei and liquid codas receive variable syllable count judgments (one and over-one syllables). Tilsen and Cohn (2016) showed that differences in judgments correlate with differences in production, supporting their hypothesis that meta-phonological judgments and speech motor control share a common representation. In the present study, we further propose that syllable count judgments are related to subsegmental representation in the rime, and are independent of acoustic duration. We test the hypothesis by comparing English and German, chosen for their similar word structures and vowel length contrast, and their crucial difference in the gestural specification of coda liquids. In English, coda liquids have an earlier vocalic gesture relative to the consonantal one, while in German, both gestures are simultaneous. We stipulated that sesquisyllabic (over-one) judgments are related to the count of sequentially-timed vocalic gestures in the rime. The difference in the coda liquid composition between the two languages predicts that sesquisyllables should not emerge in German. Our predictions were confirmed by the results of parallel production (acoustic) and syllable count judgment experiments in English and German. We propose a model accounting for these results, and we discuss its typological implications and its limitations.}, language = {en} } @article{MaoutsaOpper2022, author = {Maoutsa, Dimitra Despoina and Opper, Manfred}, title = {Deterministic particle flows for constraining stochastic nonlinear systems}, series = {Physical Review Research / American Physical Society}, volume = {4}, journal = {Physical Review Research / American Physical Society}, number = {4}, publisher = {American Physical Society}, address = {College Park}, issn = {2643-1564}, doi = {10.1103/PhysRevResearch.4.043035}, pages = {17}, year = {2022}, abstract = {Devising optimal interventions for constraining stochastic systems is a challenging endeavor that has to confront the interplay between randomness and dynamical nonlinearity. Existing intervention methods that employ stochastic path sampling scale poorly with increasing system dimension and are slow to converge. Here we propose a generally applicable and practically feasible methodology that computes the optimal interventions in a noniterative scheme. We formulate the optimal dynamical adjustments in terms of deterministically sampled probability flows approximated by an interacting particle system. Applied to several biologically inspired models, we demonstrate that our method provides the necessary optimal controls in settings with terminal, transient, or generalized collective state constraints and arbitrary system dynamics.}, language = {en} } @article{WalterZemellaSchrammetal.2022, author = {Walter, Ruben Magnus and Zemella, Anne and Schramm, Marina and Kiebist, Jan and Kubick, Stefan}, title = {Vesicle-based cell-free synthesis of short and long unspecific peroxygenases}, series = {Frontiers in Bioengineering and Biotechnology}, volume = {10}, journal = {Frontiers in Bioengineering and Biotechnology}, publisher = {Frontiers Media}, address = {Lausanne}, issn = {2296-4185}, doi = {10.3389/fbioe.2022.964396}, pages = {14}, year = {2022}, abstract = {Unspecific peroxygenases (UPOs, EC 1.11.2.1) are fungal enzymes that catalyze the oxyfunctionalization of non-activated hydrocarbons, making them valuable biocatalysts. Despite the increasing interest in UPOs that has led to the identification of thousands of putative UPO genes, only a few of these have been successfully expressed and characterized. There is currently no universal expression system in place to explore their full potential. Cell-free protein synthesis has proven to be a sophisticated technique for the synthesis of difficult-to-express proteins. In this work, we aimed to establish an insect-based cell-free protein synthesis (CFPS) platform to produce UPOs. CFPS relies on translationally active cell lysates rather than living cells. The system parameters can thus be directly manipulated without having to account for cell viability, thereby making it highly adaptable. The insect-based lysate contains translocationally active, ER-derived vesicles, called microsomes. These microsomes have been shown to allow efficient translocation of proteins into their lumen, promoting post-translational modifications such as disulfide bridge formation and N-glycosylations. In this study the ability of a redox optimized, vesicle-based, eukaryotic CFPS system to synthesize functional UPOs was explored. The influence of different reaction parameters as well as the influence of translocation on enzyme activity was evaluated for a short UPO from Marasmius rotula and a long UPO from Agrocybe aegerita. The capability of the CFPS system described here was demonstrated by the successful synthesis of a novel UPO from Podospora anserina, thus qualifying CFPS as a promising tool for the identification and evaluation of novel UPOs and variants thereof.}, language = {en} } @article{MasigolRezakhaniPourmoghaddametal.2022, author = {Masigol, Hossein and Rezakhani, Forough and Pourmoghaddam, Mohammad Javad and Khodaparast, Seyed Akbar and Grossart, Hans-Peter}, title = {The introduction of two new species of aquatic fungi from Anzali Lagoon, Northern Iran}, series = {Diversity}, volume = {14}, journal = {Diversity}, number = {10}, publisher = {MDPI}, address = {Basel}, issn = {1424-2818}, doi = {10.3390/d14100889}, pages = {12}, year = {2022}, abstract = {During a survey of aquatic fungi from Anzali Lagoon in Iran, several fungal specimens were isolated from freshwater habitats. Morphological evidence and comparing sequencing based on rDNA (ITS and LSU) and protein-coding genes (TEF1 and TUB2) showed that some isolates belong to undescribed fungal species. These isolates belong to Arthrobotrys and Sarocladium, two ascomycetes genera. Arthrobotrys hyrcanus, sp. nov., differs from closely related species such as A. dianchiensis by its larger conidia and septation of primary conidia. Sarocladium pseudokiliense, sp. nov., was similar to S. kiliense, but distinguished by its conidial shape and the absence of adelophialides and chlamydospores. Morphological descriptions, illustrations and multilocus phylogenetic analysis for both new species are provided.}, language = {en} } @article{SavchenkoLomadzeSanteretal.2022, author = {Savchenko, Vladyslav and Lomadze, Nino and Santer, Svetlana and Guskova, Olga}, title = {Spiropyran/merocyanine amphiphile in various solvents}, series = {International journal of molecular sciences}, volume = {23}, journal = {International journal of molecular sciences}, number = {19}, publisher = {MDPI}, address = {Basel}, issn = {1422-0067}, doi = {10.3390/ijms231911535}, pages = {24}, year = {2022}, abstract = {This joint experimental-theoretical work focuses on molecular and photophysical properties of the spiropyran-containing amphiphilic molecule in organic and aqueous solutions. Being dissolved in tested organic solvents, the system demonstrates positive photochromism, i.e., upon UV stimulus the colorless spiropyran form is transformed into colorful merocyanine isomer. However, the aqueous solution of the amphiphile possesses a negative photochromism: the orange-red merocyanine form becomes thermodynamically more stable in water, and both UV and vis stimuli lead to the partial or complete photobleaching of the solution. The explanation of this phenomenon is given on the basis of density functional theory calculations and classical modeling including thermodynamic integration. The simulations reveal that stabilization of merocyanine in water proceeds with the energy of ca. 70 kJ mol-1, and that the Helmholtz free energy of hydration of merocyanine form is 100 kJ mol-1 lower as compared to the behavior of SP isomer in water. The explanation of such a difference lies in the molecular properties of the merocyanine: after ring-opening reaction this molecule transforms into a zwitterionic form, as evidenced by the electrostatic potential plotted around the opened form. The presence of three charged groups on the periphery of a flat conjugated backbone stimulates the self-assembly of merocyanine molecules in water, ending up with the formation of elongated associates with stack-like building blocks, as shown in molecular dynamics simulations of the aqueous solution with the concentration above critical micelle concentration. Our quantitative evaluation of the hydrophilicity switching in spiropyran/merocyanine containing surfactants may prompt the search for new systems, including colloidal and polymeric ones, aiming at remote tuning of their morphology, which could give new promising shapes and patterns for the needs of modern nanotechnology.}, language = {en} } @article{GahlautPathakGupta2022, author = {Gahlaut, Shashank K. and Pathak, Anisha and Gupta, Banshi D.}, title = {Recent advances in silver nanostructured substrates for plasmonic sensors}, series = {Biosensors : open access journal}, volume = {12}, journal = {Biosensors : open access journal}, number = {9}, publisher = {MDPI}, address = {Basel}, issn = {2079-6374}, doi = {10.3390/bios12090713}, pages = {37}, year = {2022}, abstract = {Noble metal nanostructures are known to confine photon energies to their dimensions with resonant oscillations of their conduction electrons, leading to the ultrahigh enhancement of electromagnetic fields in numerous spectroscopic methods. Of all the possible plasmonic nanomaterials, silver offers the most intriguing properties, such as best field enhancements and tunable resonances in visible-to-near infrared regions. This review highlights the recent developments in silver nanostructured substrates for plasmonic sensing with the main emphasis on surface plasmon resonance (SPR) and surface-enhanced Raman spectroscopy (SERS) over the past decade. The main focus is on the synthesis of silver nanostructured substrates via physical vapor deposition and chemical synthesis routes and their applications in each sensing regime. A comprehensive review of recent literature on various possible silver nanostructures prepared through these methodologies is discussed and critically reviewed for various planar and optical fiber-based substrates.}, language = {en} } @article{TauschLokaSchulzeetal.2022, author = {Tausch, Simon H. and Loka, Tobias P. and Schulze, Jakob M. and Andrusch, Andreas and Klenner, Jeanette and Dabrowski, Piotr Wojciech and Lindner, Martin S. and Nitsche, Andreas and Renard, Bernhard Y.}, title = {PathoLive-real-time pathogen identification from metagenomic illumina datasets}, series = {Life}, volume = {12}, journal = {Life}, number = {9}, publisher = {MDPI}, address = {Basel}, issn = {2075-1729}, doi = {10.3390/life12091345}, pages = {17}, year = {2022}, abstract = {Over the past years, NGS has become a crucial workhorse for open-view pathogen diagnostics. Yet, long turnaround times result from using massively parallel high-throughput technologies as the analysis can only be performed after sequencing has finished. The interpretation of results can further be challenged by contaminations, clinically irrelevant sequences, and the sheer amount and complexity of the data. We implemented PathoLive, a real-time diagnostics pipeline for the detection of pathogens from clinical samples hours before sequencing has finished. Based on real-time alignment with HiLive2, mappings are scored with respect to common contaminations, low-entropy areas, and sequences of widespread, non-pathogenic organisms. The results are visualized using an interactive taxonomic tree that provides an easily interpretable overview of the relevance of hits. For a human plasma sample that was spiked in vitro with six pathogenic viruses, all agents were clearly detected after only 40 of 200 sequencing cycles. For a real-world sample from Sudan, the results correctly indicated the presence of Crimean-Congo hemorrhagic fever virus. In a second real-world dataset from the 2019 SARS-CoV-2 outbreak in Wuhan, we found the presence of a SARS coronavirus as the most relevant hit without the novel virus reference genome being included in the database. For all samples, clinically irrelevant hits were correctly de-emphasized. Our approach is valuable to obtain fast and accurate NGS-based pathogen identifications and correctly prioritize and visualize them based on their clinical significance: PathoLive is open source and available on GitLab and BioConda.}, language = {en} } @article{RanaMalikOeztuerk2022, author = {Rana, Kamal and Malik, Nishant and {\"O}zt{\"u}rk, Ugur}, title = {Landsifier v1.0: a Python library to estimate likely triggers of mapped landslides}, series = {Natural hazards and earth system sciences}, volume = {22}, journal = {Natural hazards and earth system sciences}, number = {11}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1561-8633}, doi = {10.5194/nhess-22-3751-2022}, pages = {3751 -- 3764}, year = {2022}, abstract = {Landslide hazard models aim at mitigating landslide impact by providing probabilistic forecasting, and the accuracy of these models hinges on landslide databases for model training and testing. Landslide databases at times lack information on the underlying triggering mechanism, making these inventories almost unusable in hazard models. We developed a Python-based unique library, Landsifier, that contains three different machine-Learning frameworks for assessing the likely triggering mechanisms of individual landslides or entire inventories based on landslide geometry. Two of these methods only use the 2D landslide planforms, and the third utilizes the 3D shape of landslides relying on an underlying digital elevation model (DEM). The base method extracts geometric properties of landslide polygons as a feature space for the shallow learner - random forest (RF). An alternative method relies on landslide planform images as an input for the deep learning algorithm - convolutional neural network (CNN). The last framework extracts topological properties of 3D landslides through topological data analysis (TDA) and then feeds these properties as a feature space to the random forest classifier. We tested all three interchangeable methods on several inventories with known triggers spread over the Japanese archipelago. To demonstrate the effectiveness of developed methods, we used two testing configurations. The first configuration merges all the available data for the k-fold cross-validation, whereas the second configuration excludes one inventory during the training phase to use as the sole testing inventory. Our geometric-feature-based method performs satisfactorily, with classification accuracies varying between 67 \% and 92 \%. We have introduced a more straightforward but data-intensive CNN alternative, as it inputs only landslide images without manual feature selection. CNN eases the scripting process without losing classification accuracy. Using topological features from 3D landslides (extracted through TDA) in the RF classifier improves classification accuracy by 12 \% on average. TDA also requires less training data. However, the landscape autocorrelation could easily bias TDA-based classification. Finally, we implemented the three methods on an inventory without any triggering information to showcase a real-world application.}, language = {en} } @article{OsterDiasWolffetal.2021, author = {Oster, Mathias and Dias, Marcelo A. and Wolff, Timo de and Evans, Myfanwy}, title = {Reentrant tensegrity}, series = {Science advances / American Association for the Advancement of Science}, volume = {7}, journal = {Science advances / American Association for the Advancement of Science}, number = {50}, publisher = {American Association for the Advancement of Science}, address = {Washington}, issn = {2375-2548}, doi = {10.1126/sciadv.abj6737}, pages = {6}, year = {2021}, abstract = {We present a three-periodic, chiral, tensegrity structure and demonstrate that it is auxetic. Our tensegrity structure is constructed using the chiral symmetry Pi(+) cylinder packing, transforming cylinders to elastic elements and cylinder contacts to incompressible rods. The resulting structure displays local reentrant geometry at its vertices and is shown to be auxetic when modeled as an equilibrium configuration of spatial constraints subject to a quasi-static deformation. When the structure is subsequently modeled as a lattice material with elastic elements, the auxetic behavior is again confirmed through finite element modeling. The cubic symmetry of the original structure means that the auxetic behavior is observed in both perpendicular directions and is close to isotropic in magnitude. This structure could be the simplest three-dimensional analog to the two-dimensional reentrant honeycomb. This, alongside the chirality of the structure, makes it an interesting design target for multifunctional materials.}, language = {en} } @article{UllrichGoehmannZemellaetal.2022, author = {Ullrich, Jessica and G{\"o}hmann, Philip Jonas and Zemella, Anne and Kubick, Stefan}, title = {Oligomerization of the heteromeric γ-aminobutyric acid receptor GABAB in a eukaryotic cell-free system}, series = {Scientific reports}, volume = {12}, journal = {Scientific reports}, number = {1}, publisher = {Springer Nature}, address = {[London]}, issn = {2045-2322}, doi = {10.1038/s41598-022-24885-0}, pages = {10}, year = {2022}, abstract = {Understanding the assembly mechanism and function of membrane proteins is a fundamental problem in biochemical research. Among the membrane proteins, G protein-coupled receptors (GPCRs) represent the largest class in the human body and have long been considered to function as monomers. Nowadays, the oligomeric assembly of GPCRs is widely accepted, although the functional importance and therapeutic intervention remain largely unexplored. This is partly due to difficulties in the heterologous production of membrane proteins. Cell-free protein synthesis (CFPS) with its endogenous endoplasmic reticulum-derived structures has proven as a technique to address this issue. In this study, we investigate for the first time the conceptual CFPS of a heteromeric GPCR, the gamma-aminobutyric acid receptor type B (GABA(B)), from its protomers BR1 and BR2 using a eukaryotic cell-free lysate. Using a fluorescence-based proximity ligation assay, we provide evidence for colocalization and thus suggesting heterodimerization. We prove the heterodimeric assembly by a bioluminescence resonance energy transfer saturation assay providing the manufacturability of a heterodimeric GPCR by CFPS. Additionally, we show the binding of a fluorescent orthosteric antagonist, demonstrating the feasibility of combining the CFPS of GPCRs with pharmacological applications. These results provide a simple and powerful experimental platform for the synthesis of heteromeric GPCRs and open new perspectives for the modelling of protein-protein interactions. Accordingly, the presented technology enables the targeting of protein assemblies as a new interface for pharmacological intervention in disease-relevant dimers.}, language = {en} } @article{VassilevaAlHalbouniMotaghetal.2021, author = {Vassileva, Magdalena and Al-Halbouni, Djamil and Motagh, Mahdi and Walter, Thomas R. and Dahm, Torsten and Wetzel, Hans-Ulrich}, title = {A decade-long silent ground subsidence hazard culminating in a metropolitan disaster in Maceio, Brazil}, series = {Scientific reports}, volume = {11}, journal = {Scientific reports}, number = {1}, publisher = {Springer Nature}, address = {Berlin}, issn = {2045-2322}, doi = {10.1038/s41598-021-87033-0}, pages = {13}, year = {2021}, abstract = {Ground subsidence caused by natural or anthropogenic processes affects major urban areas worldwide. Sinkhole formation and infrastructure fractures have intensified in the federal capital of Maceio (Alagoas, Brazil) since early 2018, forcing authorities to relocate affected residents and place buildings under demolition. In this study, we present a 16-year history (2004-2020) of surface displacement, which shows precursory deformations in 2004-2005, reaching a maximum cumulative subsidence of approximately 200 cm near the Mundau Lagoon coast in November 2020. By integrating the displacement observations with numerical source modelling, we suggest that extensive subsidence can be primarily associated with the removal of localized, deep-seated material at the location and depth where salt is mined. We discuss the accelerating subsidence rates, influence of severe precipitation events on the aforementioned geological instability, and related hazards. This study suggests that feedback destabilization mechanisms may arise in evaporite systems due to anthropogenic activities, fostering enhanced and complex superficial ground deformation.}, language = {en} } @article{PauzonMishurovaFischeretal.2022, author = {Pauzon, Camille and Mishurova, Tatiana and Fischer, Marie and Ahlstr{\"o}m, Johan and Fritsch, Tilman and Bruno, Giovanni and Hryha, Eduard}, title = {Impact of contour scanning and helium-rich process gas on performances of Alloy 718 lattices produced by laser powder bed fusion}, series = {Materials \& Design}, volume = {215}, journal = {Materials \& Design}, publisher = {Elsevier}, address = {Oxford}, issn = {0264-1275}, doi = {10.1016/j.matdes.2022.110501}, pages = {12}, year = {2022}, abstract = {Contour scanning and process gas type are process parameters typically considered achieving second order effects compared to first order factors such as laser power and scanning speed. The present work highlights that contour scanning is crucial to ensure geometrical accuracy and thereby the high performance under uniaxial compression of complex Alloy 718 lattice structures. Studies of X-ray computed tomography visualizations of as-built and compression-strained structures reveal the continuous and smooth bending and compression of the walls, and the earlier onset of internal contact appearance in the denser lattices printed with contour. In contrast, the effect of addition of He to the Ar process gas appears to have limited influence on the mechanical response of the lattices and their microstructure as characterized by electron backscattered diffraction. However, the addition of He proved to significantly enhance the cooling rate and to reduce the amount of the generated spatters as evidenced by in situ monitoring of the process emissions, which is very promising for the process stability and powder reusability during laser powder bed fusion.}, language = {en} } @article{BroennekeMuellerMouratisetal.2021, author = {Br{\"o}nneke, Jan Benedikt and M{\"u}ller, Jennifer and Mouratis, Konstantinos and Hagen, Julia and Stern, Ariel Dora}, title = {Regulatory, legal, and market aspects of smart wearables for cardiac monitoring}, series = {Sensors}, volume = {21}, journal = {Sensors}, number = {14}, publisher = {MDPI}, address = {Basel}, issn = {1424-8220}, doi = {10.3390/s21144937}, pages = {19}, year = {2021}, abstract = {In the area of cardiac monitoring, the use of digitally driven technologies is on the rise. While the development of medical products is advancing rapidly, allowing for new use-cases in cardiac monitoring and other areas, regulatory and legal requirements that govern market access are often evolving slowly, sometimes creating market barriers. This article gives a brief overview of the existing clinical studies regarding the use of smart wearables in cardiac monitoring and provides insight into the main regulatory and legal aspects that need to be considered when such products are intended to be used in a health care setting. Based on this brief overview, the article elaborates on the specific requirements in the main areas of authorization/certification and reimbursement/compensation, as well as data protection and data security. Three case studies are presented as examples of specific market access procedures: the USA, Germany, and Belgium. This article concludes that, despite the differences in specific requirements, market access pathways in most countries are characterized by a number of similarities, which should be considered early on in product development. The article also elaborates on how regulatory and legal requirements are currently being adapted for digitally driven wearables and proposes an ongoing evolution of these requirements to facilitate market access for beneficial medical technology in the future.}, language = {en} } @article{EgliMehrabiSeppelt2021, author = {Egli, Lukas and Mehrabi, Zia and Seppelt, Ralf}, title = {More farms, less specialized landscapes, and higher crop diversity stabilize food supplies}, series = {Environmental research letters}, volume = {16}, journal = {Environmental research letters}, number = {5}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {1748-9326}, doi = {10.1088/1748-9326/abf529}, pages = {10}, year = {2021}, abstract = {Theoretical and empirical studies show increased diversity in crops, supply chains, and markets helps stabilize food systems. At the same time global commodity markets and industrial agriculture have driven homogenization of local and regional production systems, and consolidated power in fewer larger specialized farms and distributers. This is a global challenge, with no obvious global solutions. An important question therefore, is how individual countries can build their own resilience through maintaining or increasing diversity within their borders. Here we show, using farm level data from Germany, that spreading production risk by growing the same crops across different farms carries stabilizing benefits by allowing for increased spatiotemporal asynchrony within crops. We also find that increasing asynchrony between the year-to-year production of different crops has stabilizing effects on food supply. Importantly, the benefits of increasing crop diversity are lower in specialized landscapes growing the same crop on large patches. Our results illustrate clear benefits of diversified crops, producers, and agricultural landscapes to buffer supply side shocks, and for incorporation in subsidies and other regulatory measures aimed at stabilizing food systems.}, language = {en} } @article{ChromikKlopfensteinPfitzneretal.2022, author = {Chromik, Jonas and Klopfenstein, Sophie Anne Ines and Pfitzner, Bjarne and Sinno, Zeena-Carola and Arnrich, Bert and Balzer, Felix and Poncette, Akira-Sebastian}, title = {Computational approaches to alleviate alarm fatigue in intensive care medicine: a systematic literature review}, series = {Frontiers in digital health}, volume = {4}, journal = {Frontiers in digital health}, publisher = {Frontiers Media}, address = {Lausanne}, issn = {2673-253X}, doi = {10.3389/fdgth.2022.843747}, pages = {15}, year = {2022}, abstract = {Patient monitoring technology has been used to guide therapy and alert staff when a vital sign leaves a predefined range in the intensive care unit (ICU) for decades. However, large amounts of technically false or clinically irrelevant alarms provoke alarm fatigue in staff leading to desensitisation towards critical alarms. With this systematic review, we are following the Preferred Reporting Items for Systematic Reviews (PRISMA) checklist in order to summarise scientific efforts that aimed to develop IT systems to reduce alarm fatigue in ICUs. 69 peer-reviewed publications were included. The majority of publications targeted the avoidance of technically false alarms, while the remainder focused on prediction of patient deterioration or alarm presentation. The investigated alarm types were mostly associated with heart rate or arrhythmia, followed by arterial blood pressure, oxygen saturation, and respiratory rate. Most publications focused on the development of software solutions, some on wearables, smartphones, or headmounted displays for delivering alarms to staff. The most commonly used statistical models were tree-based. In conclusion, we found strong evidence that alarm fatigue can be alleviated by IT-based solutions. However, future efforts should focus more on the avoidance of clinically non-actionable alarms which could be accelerated by improving the data availability.}, language = {en} } @article{JonesWiesner2022, author = {Jones, Chris and Wiesner, Karoline}, title = {Clarifying how degree entropies and degree-degree correlations relate to network robustness}, series = {Entropy : an international and interdisciplinary journal of entropy and information studies}, volume = {24}, journal = {Entropy : an international and interdisciplinary journal of entropy and information studies}, number = {9}, publisher = {MDPI}, address = {Basel}, issn = {1099-4300}, doi = {10.3390/e24091182}, pages = {13}, year = {2022}, abstract = {It is often claimed that the entropy of a network's degree distribution is a proxy for its robustness. Here, we clarify the link between degree distribution entropy and giant component robustness to node removal by showing that the former merely sets a lower bound to the latter for randomly configured networks when no other network characteristics are specified. Furthermore, we show that, for networks of fixed expected degree that follow degree distributions of the same form, the degree distribution entropy is not indicative of robustness. By contrast, we show that the remaining degree entropy and robustness have a positive monotonic relationship and give an analytic expression for the remaining degree entropy of the log-normal distribution. We also show that degree-degree correlations are not by themselves indicative of a network's robustness for real networks. We propose an adjustment to how mutual information is measured which better encapsulates structural properties related to robustness.}, language = {en} } @article{KindermannDoblerNiedeggenetal.2021, author = {Kindermann, Liana and Dobler, Magnus and Niedeggen, Daniela and Linst{\"a}dter, Anja}, title = {A new protocol for estimation of woody aboveground biomass in disturbance-prone ecosystems}, series = {Ecological indicators : integrating monitoring, assessment and management}, volume = {135}, journal = {Ecological indicators : integrating monitoring, assessment and management}, publisher = {Elsevier}, address = {Amsterdam}, issn = {1470-160X}, doi = {10.1016/j.ecolind.2021.108466}, pages = {16}, year = {2021}, abstract = {Almost one third of global drylands are open forests and savannas, which are typically shaped by frequent natural disturbances such as wildfire and herbivory. Studies on ecosystem functions and services of woody vegetation require robust estimates of aboveground biomass (AGB). However, most methods have been developed for comparatively undisturbed forest ecosystems. As they are not tailored to accurately quantify AGB of small and irregular growth forms, their application on these growth forms may lead to unreliable or even biased AGB estimates in disturbance-prone dryland ecosystems. Moreover, these methods cannot quantify AGB losses caused by disturbance agents. Here we propose a methodology to estimate individual-and stand-level woody AGB in disturbance-prone ecosystems. It consists of flexible field sampling routines and estimation workflows for six growth classes, delineated by size and damage criteria. It also comprises a detailed damage assessment, harnessing the ecological archive of woody growth for past disturbances. Based on large inventories collected along steep gradients of elephant disturbances in African dryland ecosystems, we compared the AGB estimates generated with our proposed method against estimates from a less adapted forest inventory method. We evaluated the necessary stepwise procedures of method adaptation and analyzed each step's effect on stand-level AGB estimation. We further explored additional advantages of our proposed method with regard to disturbance impact quantification. Results indicate that a majority of growth forms and individuals in savanna vegetation could only be assessed if methods of AGB estimation were adapted to the conditions of a disturbance-prone ecosystem. Furthermore, our damage assessment demonstrated that one third to half of all woody AGB was lost to disturbances. Consequently, less adapted methods may be insufficient and are likely to render inaccurate AGB estimations. Our proposed method has the potential to accurately quantify woody AGB in disturbance-prone ecosystems, as well as AGB losses. Our method is more time consuming than conventional allometric approaches, yet it can cover sufficient areas within reasonable timespans, and can also be easily adapted to alternative sampling schemes.}, language = {en} } @article{KoertingKoellnerKurasetal.2021, author = {K{\"o}rting, Friederike Magdalena and K{\"o}llner, Nicole and Kuras, Agnieszka and B{\"o}sche, Nina Kristin and Rogass, Christian and Mielke, Christian and Elger, Kirsten and Altenberger, Uwe}, title = {A solar optical hyperspectral library of rare-earth-bearing minerals, rare-earth oxide powders, copper-bearing minerals and Apliki mine surface samples}, series = {Earth system science data : ESSD}, volume = {13}, journal = {Earth system science data : ESSD}, publisher = {Copernics Publications}, address = {Katlenburg-Lindau}, issn = {1866-3508}, doi = {10.5194/essd-13-923-2021}, pages = {923 -- 942}, year = {2021}, abstract = {Mineral resource exploration and mining is an essential part of today's high-tech industry. Elements such as rare-earth elements (REEs) and copper are, therefore, in high demand. Modern exploration techniques from multiple platforms (e.g., spaceborne and airborne), to detect and map the spectral characteristics of the materials of interest, require spectral libraries as an essential reference. They include field and laboratory spectral information in combination with geochemical analyses for validation. Here, we present a collection of REE- and copper-related hyperspectral spectra with associated geochemical information. The libraries contain reflectance spectra from rare-earth element oxides, REE-bearing minerals, copper-bearing minerals and mine surface samples from the Apliki copper-gold-pyrite mine in the Republic of Cyprus. The samples were measured with the HySpex imaging spectrometers in the visible and near infrared (VNIR) and shortwave infrared (SWIR) range (400-2500 nm). The geochemical validation of each sample is provided with the reflectance spectra. The spectral libraries are openly available to assist future mineral mapping campaigns and laboratory spectroscopic analyses. The spectral libraries and corresponding geochemistry are published via GFZ Data Services with the following DOIs: https://doi.org/10.5880/GFZ.1.4.2019.004 (13 REE-bearing minerals and 16 oxide powders, Koerting et al., 2019a), https://doi.org/10.5880/GFZ.1.4.2019.003 (20 copper-bearing minerals, Koellner et al., 2019), and https://doi.org/10.5880/GFZ.1.4.2019.005 (37 copper-bearing surface material samples from the Apliki coppergold-pyrite mine in Cyprus, Koerting et al., 2019b). All spectral libraries are united and comparable by the internally consistent method of hyperspectral data acquisition in the laboratory.}, language = {en} } @article{KindermannDoblerNiedeggenetal.2022, author = {Kindermann, Liana and Dobler, Magnus and Niedeggen, Daniela and Chimbioputo Fabiano, Ezequiel and Linst{\"a}dter, Anja}, title = {Dataset on woody aboveground biomass, disturbance losses, and wood density from an African savanna ecosystem}, series = {Data in Brief}, volume = {42}, journal = {Data in Brief}, publisher = {Elsevier}, address = {Amsterdam, Niederlande}, issn = {2352-3409}, doi = {10.1016/j.dib.2022.108155}, pages = {1 -- 16}, year = {2022}, abstract = {This dataset comprises tree inventories and damage assessments performed in Namibia's semi-arid Zambezi Region. Data were sampled in savannas and savanna woodlands along steep gradients of elephant population densities to capture the effects of those (and other) disturbances on individual-level and stand-level aboveground woody biomass (AGB). The dataset contains raw data on dendrometric measures and processed data on specific wood density (SWD), woody aboveground biomass, and biomass losses through disturbance impacts. Allometric proxies (height, canopy diameters, and in adult trees also stem circumferences) were recorded for n = 6,179 tree and shrub individuals. Wood samples were taken for each encountered species to measure specific wood density. These measurements have been used to estimate woody aboveground biomass via established allometric models, advanced through our improved methodologies and workflows that accounted for tree and shrub architecture shaped by disturbance impacts. To this end, we performed a detailed damage assessment on each woody individual in the field. In addition to estimations of standing biomass, our new method also delivered data on biomass losses to different disturbance agents (elephants, fire, and others) on the level of plant individuals and stands. The data presented here have been used within a study published with Ecological Indicators (Kindermann et al., 2022) to evaluate the benefits of our improved methodology in comparison to a standard reference method of aboveground biomass estimations. Additionally, it has been employed in a study on carbon storage and sequestration in vegetation and soils (Sandhage-Hofmann et al., 2021). The raw data of dendrometric measurements can be subjected to other available allometric models for biomass estimation. The processed data can be used to analyze disturbance impacts on woody aboveground biomass, or for regional carbon storage estimates. The data on species-specific wood density can be used for application to other dendrometric datasets to (re-) estimate biomass through allometric models requiring wood density. It can further be used for plant functional trait analyses.}, language = {en} } @article{DaempflingMielkeKoellneretal.2022, author = {D{\"a}mpfling, Helge L. C. and Mielke, Christian and Koellner, Nicole and Lorenz, Melanie and Rogass, Christian and Altenberger, Uwe and Harlov, Daniel E. and Knoper, Michael}, title = {Automatic element and mineral detection in thin sections using hyperspectral transmittance imaging microscopy (HyperTIM)}, series = {European journal of mineralogy}, volume = {34}, journal = {European journal of mineralogy}, number = {3}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {0935-1221}, doi = {10.5194/ejm-34-275-2022}, pages = {275 -- 284}, year = {2022}, abstract = {In this study we present a novel method for the automatic detection of minerals and elements using hyperspectral transmittance imaging microscopy measurements of complete thin sections (HyperTIM). This is accomplished by using a hyperspectral camera system that operates in the visible and near-infrared (VNIR) range with a specifically designed sample holder, scanning setup, and a microscope lens. We utilize this method on a monazite ore thin section from Steenkampskraal (South Africa), which we analyzed for the rare earth element (REE)-bearing mineral monazite ((Ce,Nd,La)PO4), with high concentrations of Nd. The transmittance analyses with the hyperspectral VNIR camera can be used to identify REE minerals and Nd in thin sections. We propose a three-point band depth index, the Nd feature depth index (NdFD), and its related product the Nd band depth index (NdBDI), which enables automatic mineral detection and classification for the Nd-bearing monazites in thin sections. In combination with the average concentration of the relative Nd content, it permits a destruction-free, total concentration calculation for Nd across the entire thin section.}, language = {en} } @article{WangKuhnGongetal.2021, author = {Wang, Rong and Kuhn, Gerhard and Gong, Xun and Biskaborn, Boris K. and Gersonde, Rainer and Lembke-Jene, Lester and Lohmann, Gerrit and Tiedemann, Ralf and Diekmann, Bernhard}, title = {Deglacial land-ocean linkages at the Alaskan continental margin in the Bering Sea}, series = {Frontiers in Earth Science}, volume = {9}, journal = {Frontiers in Earth Science}, publisher = {Frontiers Media}, address = {Lausanne}, issn = {2296-6463}, doi = {10.3389/feart.2021.712415}, pages = {16}, year = {2021}, abstract = {A marine sediment record from the central Bering Sea, spanning the last 20 thousand years (ka), was studied to unravel the depositional history with regard to terrigenous sediment supply and biogenic sedimentation. Methodic approaches comprised the inference of accumulation rates of siliciclastic and biogenic components, grain-size analysis, and (clay) mineralogy, as well as paleoclimatic modelling. Changes in the depositional history provides insight into land-ocean linkages of paleoenvironmental changes. During the finale of the Last Glacial Maximum, the depositional environment was characterized by hemipelagic background sedimentation. A marked change in the terrigenous sediment provenance during the late Heinrich 1 Stadial (15.7-14.5 ka), indicated by increases in kaolinite and a high glaciofluvial influx of clay, gives evidence of the deglaciation of the Brooks Range in the hinterland of Alaska. This meltwater pulse also stimulated the postglacial onset of biological productivity. Glacial melt implies regional climate warming during a time of widespread cooling on the northern hemisphere. Our simulation experiment with a coupled climate model suggests atmospheric teleconnections to the North Atlantic, with impacts on the dynamics of the Aleutian Low system that gave rise to warmer winters and an early onset of spring during that time. The late deglacial period between 14.5 and 11.0 ka was characterized by enhanced fluvial runoff and biological productivity in the course of climate amelioration, sea-level rise, seasonal sea-ice retreat, and permafrost thaw in the hinterland. The latter processes temporarily stalled during the Younger Dryas stadial (12.9-11.7 ka) and commenced again during the Preboreal (earliest Holocene), after 11.7 ka. High river runoff might have fertilized the Bering Sea and contributed to enhanced upper ocean stratification. Since 11.0 ka, advanced transgression has shifted the coast line and fluvial influence of the Yukon River away from the study site. The opening of the Bering Strait strengthened contour currents along the continental slope, leaving behind winnowed sand-rich sediments through the early to mid-Holocene, with non-deposition occurring since about 6.0 ka.}, language = {en} } @article{ArnoldHagemannGilissenetal.2022, author = {Arnold, Patrick and Hagemann, Justus and Gilissen, Emmanuel and Hofreiter, Michael}, title = {Otter shrew mitogenomes (Afrotheria, Potamogalidae) reconstructed from historical museum skins}, series = {Mitochondrial DNA. Part B}, volume = {7}, journal = {Mitochondrial DNA. Part B}, number = {9}, publisher = {Taylor \& Francis Group}, address = {London}, issn = {2380-2359}, doi = {10.1080/23802359.2022.2122747}, pages = {1699 -- 1701}, year = {2022}, abstract = {African otter shrews (Potamogalidae) are Afrotherian mammals adapted to a semi-aquatic lifestyle. Given their rareness, genetic data on otter shrews are limited. By applying laboratory methods tuned for the recovery of archival DNA and an iterative mapping approach, we reconstructed whole mitochondrial genomes of the Giant (Potamogale velox) and Ruwenzori pygmy otter shrew (Micropotamogale ruwenzorii) from historical museum skins. Phylogenetic analyses are consistent with previous reports in recovering a sister relationship between African otter shrews and Malagasy tenrecs. The long branches separating both lineages, however, support their recognition as separate families.}, language = {en} } @article{OlimiBickelWicaksonoetal.2022, author = {Olimi, Expedito and Bickel, Samuel and Wicaksono, Wisnu Adi and Kusstatscher, Peter and Matzer, Robert and Cernava, Tomislav and Berg, Gabriele}, title = {Deciphering the microbial composition of biodynamic preparations and their effects on the apple rhizosphere microbiome}, series = {Frontiers in soil science}, volume = {2}, journal = {Frontiers in soil science}, publisher = {Frontiers Media}, address = {Lausanne}, issn = {2673-8619}, doi = {10.3389/fsoil.2022.1020869}, pages = {18}, year = {2022}, abstract = {Soil microbial communities are crucial for plant growth and are already depleted by anthropogenic activities. The application of microbial transplants provides a strategy to restore beneficial soil traits, but less is known about the microbiota of traditional inoculants used in biodynamic agriculture. In this study, we used amplicon sequencing and quantitative PCR to decipher microbial communities of composts, biodynamic manures, and plant preparations from Austria and France. In addition, we investigated the effect of extracts derived from biodynamic manure and compost on the rhizosphere microbiome of apple trees. Microbiota abundance, composition, and diversity of biodynamic manures, plant preparations, and composts were distinct. Microbial abundances ranged between 1010-1011 (bacterial 16S rRNA genes) and 109-1011 (fungal ITS genes). The bacterial diversity was significantly higher in biodynamic manures compared to compost without discernible differences in abundance. Fungal diversity was not significantly different while abundance was increased in biodynamic manures. The microbial communities of biodynamic manures and plant preparations were specific for each production site, but all contain potentially plant-beneficial bacterial genera. When applied in apple orchards, biodynamic preparations (extracts) had the non-significant effect of reducing bacterial and fungal abundance in apple rhizosphere (4 months post-application), while increasing fungal and lowering bacterial Shannon diversity. One to four months after inoculation, individual taxa indicated differential abundance. We observed the reduction of the pathogenic fungus Alternaria, and the enrichment of potentially beneficial bacterial genera such as Pseudomonas. Our study paves way for the science-based adaptation of empirically developed biodynamic formulations under different farming practices to restore the vitality of agricultural soils.}, language = {en} } @article{HashemiRazaghiMoghadamLaitinenetal.2022, author = {Hashemi, Seirana and Razaghi-Moghadam, Zahra and Laitinen, Roosa A. E. and Nikoloski, Zoran}, title = {Relative flux trade-offs and optimization of metabolic network functionalities}, series = {Computational and structural biotechnology journal}, volume = {20}, journal = {Computational and structural biotechnology journal}, publisher = {Research Network of Computational and Structural Biotechnology (RNCSB)}, address = {Gotenburg}, issn = {2001-0370}, doi = {10.1016/j.csbj.2022.07.038}, pages = {3963 -- 3971}, year = {2022}, abstract = {Trade-offs between traits are present across different levels of biological systems and ultimately reflect constraints imposed by physicochemical laws and the structure of underlying biochemical networks. Yet, mechanistic explanation of how trade-offs between molecular traits arise and how they relate to optimization of fitness-related traits remains elusive. Here, we introduce the concept of relative flux trade-offs and propose a constraint-based approach, termed FluTOr, to identify metabolic reactions whose fluxes are in relative trade-off with respect to an optimized fitness-related cellular task, like growth. We then employed FluTOr to identify relative flux trade-offs in the genome-scale metabolic networks of Escherichia coli, Saccharomyces cerevisiae, and Arabidopsis thaliana. For the metabolic models of E. coli and S. cerevisiae we showed that: (i) the identified relative flux trade-offs depend on the carbon source used and that (ii) reactions that participated in relative trade-offs in both species were implicated in cofactor biosynthesis. In contrast to the two microorganisms, the relative flux trade-offs for the metabolic model of A. thaliana did not depend on the available nitrogen sources, reflecting the differences in the underlying metabolic network as well as the considered environments. Lastly, the established connection between relative flux trade-offs allowed us to identify overexpression targets that can be used to optimize fitness-related traits. Altogether, our computational approach and findings demonstrate how relative flux trade-offs can shape optimization of metabolic tasks, important in biotechnological applications.}, language = {en} } @article{YadavHusainFutrell2022, author = {Yadav, Himanshu and Husain, Samar and Futrell, Richard}, title = {Assessing corpus evidence for formal and psycholinguistic constraints on nonprojectivity}, series = {Computational linguistics}, volume = {48}, journal = {Computational linguistics}, number = {2}, publisher = {MIT Press}, address = {Cambridge}, issn = {0891-2017}, doi = {10.1162/coli_a_00437}, pages = {375 -- 401}, year = {2022}, abstract = {Formal constraints on crossing dependencies have played a large role in research on the formal complexity of natural language grammars and parsing. Here we ask whether the apparent evidence for constraints on crossing dependencies in treebanks might arise because of independent constraints on trees, such as low arity and dependency length minimization. We address this question using two sets of experiments. In Experiment 1, we compare the distribution of formal properties of crossing dependencies, such as gap degree, between real trees and baseline trees matched for rate of crossing dependencies and various other properties. In Experiment 2, we model whether two dependencies cross, given certain psycholinguistic properties of the dependencies. We find surprisingly weak evidence for constraints originating from the mild context-sensitivity literature (gap degree and well-nestedness) beyond what can be explained by constraints on rate of crossing dependencies, topological properties of the trees, and dependency length. However, measures that have emerged from the parsing literature (e.g., edge degree, end-point crossings, and heads' depth difference) differ strongly between real and random trees. Modeling results show that cognitive metrics relating to information locality and working-memory limitations affect whether two dependencies cross or not, but they do not fully explain the distribution of crossing dependencies in natural languages. Together these results suggest that crossing constraints are better characterized by processing pressures than by mildly context-sensitive constraints.}, language = {en} } @article{StechemesserLevermannWenz2022, author = {Stechemesser, Annika and Levermann, Anders and Wenz, Leonie}, title = {Temperature impacts on hate speech online: evidence from 4 billion geolocated tweets from the USA}, series = {The lancet. Planetary health}, volume = {6}, journal = {The lancet. Planetary health}, number = {9}, publisher = {Elsevier}, address = {Amsterdam}, issn = {2542-5196}, doi = {10.1016/S2542-5196(22)00173-5}, pages = {E714 -- E725}, year = {2022}, abstract = {Background - A link between weather and aggression in the offline world has been established across a variety of societal settings. Simultaneously, the rapid digitalisation of nearly every aspect of everyday life has led to a high frequency of interpersonal conflicts online. Hate speech online has become a prevalent problem that has been shown to aggravate mental health conditions, especially among young people and marginalised groups. We examine the effect of temperature on the occurrence of hate speech on the social media platform Twitter and interpret the results in the context of the interlinkage between climate change, human behaviour, and mental health. Methods - In this quantitative empirical study, we used a supervised machine learning approach to identify hate speech in a dataset containing around 4 billion geolocated tweets from 773 cities across the USA between May 1, 2014 and May 1, 2020. We statistically evaluated the changes in daily hate tweets against changes in local temperature, isolating the temperature influence from confounding factors using binned panel-regression models. Findings - The prevalence of hate tweets was lowest at moderate temperatures (12 to 21?) and marked increases in the number of hate tweets were observed at hotter and colder temperatures, reaching up to 12middot5\% (95\% CI 8middot0-16middot5) for cold temperature extremes (-6 to -3?) and up to 22middot0\% (95\% CI 20middot5-23middot5) for hot temperature extremes (42 to 45?). Outside of the moderate temperature range, the hate tweets also increased as a proportion of total tweeting activity. The quasi-quadratic shape of the temperature-hate tweet curve was robust across varying climate zones, income quartiles, religious and political beliefs, and both city-level and state-level aggregations. However, temperature ranges with the lowest prevalence of hate tweets were centred around the local temperature mean and the magnitude of the increases in hate tweets for hot and cold temperatures varied across the climate zones. Interpretation - Our results highlight hate speech online as a potential channel through which temperature alters interpersonal conflict and societal aggression. We provide empirical evidence that hot and cold temperatures can aggravate aggressive tendencies online. The prevalence of the results across climatic and socioeconomic subgroups points to limitations in the ability of humans to adapt to temperature extremes.}, language = {en} } @article{ThongthaisongKasadaGrossartetal.2022, author = {Thongthaisong, Patch and Kasada, Minoru and Grossart, Hans-Peter and Wollrab, Sabine}, title = {Critical role of parasite-mediated energy pathway on community response to nutrient enrichment}, series = {Ecology and evolution}, volume = {12}, journal = {Ecology and evolution}, number = {12}, publisher = {John Wiley \& Sons, Inc.}, address = {[Hoboken]}, issn = {2045-7758}, doi = {10.1002/ece3.9622}, pages = {12}, year = {2022}, abstract = {Parasites form an integral part of food webs, however, they are often ignored in classic food web theory or limited to the investigation of trophic transmission pathways. Specifically, direct consumption of parasites by nonhost predators is rarely considered, while it can contribute substantially to energy flow in food webs. In aquatic systems, chytrids constitute a major group of fungal parasites whose free-living infective stages (zoospores) form a highly nutritional food source to zooplankton. Thereby, the consumption of zoospores can create an energy pathway from otherwise inedible phytoplankton to zooplankton ( "mycoloop "). This parasite-mediated energy pathway might be of special importance during phytoplankton blooms dominated by inedible or toxic primary producers like cyanobacteria, which are on the rise with eutrophication and global warming. We theoretically investigated community dynamics and energy transfer in a food web consisting of an edible nonhost and an inedible host phytoplankton species, a parasitic fungus, and a zooplankton species grazing on edible phytoplankton and fungi. Food web dynamics were investigated along a nutrient gradient contrasting nonadaptive zooplankton species representative for filter feeders like cladocerans and zooplankton with the ability to actively adapt their feeding preferences like many copepod species. Overall, the importance of the mycoloop for zooplankton increases with nutrient availability. This increase is smooth for nonadaptive consumers. For adaptive consumers, we observe an abrupt shift from an almost exclusive preference for edible phytoplankton at low nutrient levels to a strong preference for parasitic fungi at high nutrient levels. The model predicts that parasitic fungi could contribute up to 50\% of the zooplankton diet in nutrient-rich environments, which agrees with empirical observations on zooplankton gut content from eutrophic systems during blooms of inedible diatoms or cyanobacteria. Our findings highlight the role of parasite-mediated energy pathways for predictions of energy flow and community composition under current and future environmental change.}, language = {en} } @article{Pinkas2024, author = {Pinkas, Ronen}, title = {The forgotten language of nontheistic mysticism}, series = {Religions}, volume = {15}, journal = {Religions}, number = {5}, publisher = {MDPI}, address = {Basel}, issn = {2077-1444}, doi = {10.3390/rel15050531}, pages = {27}, year = {2024}, abstract = {In You Shall Be as Gods, Erich Fromm (1900-1980) defines his position as nontheistic mysticism. This research clarifies the term, considers its importance within Fromm's humanism, and explores its potential origins. The nontheistic mystical position plays a central role in Fromm's understanding of the relationship between mysticism and organized religion, religion and religiosity, and it clarifies the relationship between religion, philosophy, and social psychoanalysis, whose combination constitutes his humanistic ethics. Nontheistic mysticism relates, as well, to Fromm's understanding of human nature; it involves the question of the relationship between language, perception, and experience. The nontheistic mystical position is linked to Fromm's negative theology, the x experience, and idolatry. Hence, the nontheistic mystical position is relevant to Fromm's understanding of self-realization and his vision of a sane society. Unlike some scholarly opinion, the conclusions of this paper suggest that Fromm's humanism is not radical, as long as radical is defined as an absolute atheistic secular feature that eliminates the range of religious language and experience. Rather, it is a broad and cautious humanism that, on the one hand, internalizes the transcendent divinity into the human subject and transforms it into anthropological-ethical phenomena, but, on the other, implies that atheism carries the risk of an idolatrous identification of the human being with God. Consequently, this humanism requires a religious-mystical component to adequately portray the spiritual and ethical potentials of humanity and its challenges. Nontheistic mysticism is a consciousness mechanism aimed at the fine-tuning of the individual's moral compass, which is affected by the pathologies of normalcy that prevail in all societies.}, language = {en} } @article{FernerLinstaedterRogassetal.2021, author = {Ferner, Jessica and Linst{\"a}dter, Anja and Rogass, Christian and S{\"u}dekum, Karl-Heinz and Schmidtlein, Sebastian}, title = {Towards forage resource monitoring in subtropical savanna grasslands}, series = {European journal of remote sensing}, volume = {54}, journal = {European journal of remote sensing}, number = {1}, publisher = {geoLAB, Laboratory of Geomatics}, address = {Florence}, issn = {2279-7254}, doi = {10.1080/22797254.2021.1934556}, pages = {364 -- 384}, year = {2021}, abstract = {Forage supply of savanna grasslands plays a crucial role for local food security and consequently, a reliable monitoring system could help to better manage vital forage resources. To help installing such a monitoring system, we investigated whether in-situ hyperspectral data could be resampled to match the spectral resolution of multi- and hyperspectral satellites; if the type of sensor affected model transfer; and if spatio-temporal patterns of forage characteristics could be related to environmental drivers. We established models for forage quantity (green biomass) and five forage quality proxies (metabolisable energy, acid/neutral detergent fibre, ash, phosphorus). Hyperspectral resolution of the Hyperion satellite mostly resulted in higher accuracies (i.e. higher R-2, lower RMSE). When applied to satellite data, though, the greater quality of the multispectral Sentinel-2 satellite data leads to more realistic forage maps. By analysing a three-year time series, we found plant phenology and cumulated precipitation to be the most important environmental drivers of forage supply. We conclude that none of the investigated satellites provide optimal conditions for monitoring purposes. Future hyperspectral satellite missions like EnMAP, combining the high information level of Hyperion with the good data quality and resolution of Sentinel-2, will provide the prerequisites for installing a regular monitoring service.}, language = {en} } @article{HuangBorchardtRode2022, author = {Huang, Jingshui and Borchardt, Dietrich and Rode, Michael}, title = {How do inorganic nitrogen processing pathways change quantitatively at daily, seasonal, and multiannual scales in a large agricultural stream?}, series = {Hydrology and earth system sciences : HESS}, volume = {26}, journal = {Hydrology and earth system sciences : HESS}, number = {22}, publisher = {Copernicus Publ.}, address = {G{\"o}ttingen}, issn = {1027-5606}, doi = {10.5194/hess-26-5817-2022}, pages = {5817 -- 5833}, year = {2022}, abstract = {Large agricultural streams receive excessive inputs of nitrogen. However, quantifying the role of these streams in nitrogen processing remains limited because continuous direct measurements of the interacting and highly time-varying nitrogen processing pathways in larger streams and rivers are very complex. Therefore, we employed a monitoring-driven modelling approach with high-frequency in situ data and the river water quality model Water Quality Analysis Simulation Program (WASP) 7.5.2 in the 27.4 km reach of the sixth-order agricultural stream called Lower Bode (central Germany) for a 5-year period (2014-2018). Paired high-frequency sensor data (15 min interval) of discharge, nitrate, dissolved oxygen, and chlorophyll a at upstream and downstream stations were used as model boundaries and for setting model constraints. The WASP model simulated 15 min intervals of discharge, nitrate, and dissolved oxygen with Nash-Sutcliffe efficiency values higher than 0.9 for calibration and validation, enabling the calculation of gross and net dissolved inorganic nitrogen uptake and pathway rates on a daily, seasonal, and multiannual scale. Results showed daily net uptake rate of dissolved inorganic nitrogen ranged from -17.4 to 553.9 mgNm(-2)d(-1). The highest daily net uptake could reach almost 30 \% of the total input loading, which occurred at extreme low flow in summer 2018. The growing season (spring and summer) accounted for 91 \% of the average net annual uptake of dissolved inorganic nitrogen in the measured period. In spring, both the DIN gross and net uptake were dominated by the phytoplankton uptake pathway. In summer, benthic algae assimilation dominated the gross uptake of dissolved inorganic nitrogen. Conversely, the reach became a net source of dissolved inorganic nitrogen with negative daily net uptake values in autumn and winter, mainly because the release from benthic algae surpassed uptake processes. Over the 5 years, average gross and net uptake rates of dissolved inorganic nitrogen were 124.1 and 56.8 mgNm(-2)d(-1), which accounted for only 2.7 \% and 1.2 \% of the total loadings in the Lower Bode, respectively. The 5-year average gross DIN uptake decreased from assimilation by benthic algae through assimilation by phytoplankton to denitrification. Our study highlights the value of combining river water quality modelling with high-frequency data to obtain a reliable budget of instream dissolved inorganic nitrogen processing which facilitates our ability to manage nitrogen in aquatic systems. This study provides a methodology that can be applied to any large stream to quantify nitrogen processing pathway dynamics and complete our understanding of nitrogen cycling.}, language = {en} } @article{KoukouliotiStavrakakiVomvaetal.2022, author = {Koukoulioti, Vasiliki and Stavrakaki, Stavroula and Vomva, Maria and Adani, Flavia}, title = {Gender marking and clitic pronoun resolution in simultaneous bilingual children}, series = {Languages : open access journal}, volume = {7}, journal = {Languages : open access journal}, number = {4}, publisher = {MDPI}, address = {Basel}, issn = {2226-471X}, doi = {10.3390/languages7040250}, pages = {49}, year = {2022}, abstract = {The acquisition of clitics still remains a highly controversial issue in Greek acquisition literature despite the bulk of studies performed. Object clitics have been shown to be early acquired by monolingual children in terms of production rates, whereas only highly proficient bilingual children achieve target-like performance. Crucially, errors in gender marking are persistent for monolingual and bilingual children even when adult-like production rates are achieved. This study aims to readdress the acquisition of clitics in an innovative way, by entering the variable of gender in an experimental design targeting to assess production and processing by bilingual and monolingual children. Moreover, we examined the role of language proficiency (in terms of general verbal intelligence and syntactic production abilities). The groups had comparable performance in both tasks (in terms of correct responses and error distribution in production and reaction times in comprehension). However, verbal intelligence had an effect on the performance of the monolingual but not of the bilingual group in the production task, and bilingual children were overall slower in the comprehension task. Syntactic production abilities did not have any effect. We argue that gender marking affects clitic processing, and we discuss the implications of our findings for bilingual acquisition.}, language = {en} } @article{Homolka2022, author = {Homolka, Walter}, title = {The messianic concept in modern Judaism}, series = {Teologia i Moralność}, volume = {17}, journal = {Teologia i Moralność}, number = {1}, publisher = {Uniwersytet Imienia Adama Mickiewicza}, address = {Poznań}, issn = {1898-2964}, doi = {10.14746/TIM.2022.31.1.10}, pages = {145 -- 172}, year = {2022}, abstract = {The history of the Messiah in Judaism is a history of disappointed hopes. Again and again, there were salvation fi gures to whom this role was ascribed. But redemption from occupation and foreign rule, exile, oppression and persecution failed to materialize. Therefore, the expectation of the Messiah fell to the periphery of Jewish theology. This article examinesin what ways the messianic concept plays a role in modern times and what it contributes to describing the relationship between God and humanity in Judaism. The author intends to show the development from the abandonment of a personal Messiah towards the affi rmation of the prophets' hope for a universal messianic age in which the duty of all people to participate in the healing of the world becomes central. What becomes also clear is: The messiah idea cannot be a bridge between Christianity and Judaism.}, language = {en} }