@article{AbkeSchwirtlichSedelmaier2013, author = {Abke, J{\"o}rg and Schwirtlich, Vincent and Sedelmaier, Yvonne}, title = {Kompetenzf{\"o}rderung im Software Engineering durch ein mehrstufiges Lehrkonzept im Studiengang Mechatronik}, series = {Commentarii informaticae didacticae : (CID)}, journal = {Commentarii informaticae didacticae : (CID)}, number = {5}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {1868-0844}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-64899}, pages = {79 -- 84}, year = {2013}, abstract = {Dieser Beitrag stellt das Lehr-Lern-Konzept zur Kompetenzf{\"o}rderung im Software Engineering im Studiengang Mechatronik der Hochschule Aschaffenburg dar. Dieses Konzept ist mehrstufig mit Vorlesungs-, Seminar- und Projektsequenzen. Dabei werden Herausforderungen und Verbesserungspotentiale identifiziert und dargestellt. Abschließend wird ein {\"U}berblick gegeben, wie im Rahmen eines gerade gestarteten Forschungsprojektes Lehr-Lernkonzepte weiterentwickelt werden k{\"o}nnen.}, language = {de} } @article{Doerge2013, author = {D{\"o}rge, Christina}, title = {Entwicklung eines methodologischen Verfahrens zur Ermittlung von informatischen Kompetenzen}, series = {Commentarii informaticae didacticae : (CID)}, journal = {Commentarii informaticae didacticae : (CID)}, number = {5}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {1868-0844}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-64906}, pages = {85 -- 90}, year = {2013}, abstract = {Der traditionelle Weg in der Informatik besteht darin, Kompetenzen entweder normativ durch eine Expertengruppe festzulegen oder als Ableitungsergebnis eines Bildungsstandards aus einem externen Feld. Dieser Artikel stellt einen neuartigen und alternativen Ansatz vor, der sich der Methodik der Qualitativen Inhaltsanalyse (QI) bedient. Das Ziel war die Ableitung von informatischen Schl{\"u}sselkompetenzen anhand bereits etablierter und erprobter didaktischer Ans{\"a}tze der Informatikdidaktik. Dazu wurde zun{\"a}chst aus einer Reihe von Informatikdidaktikb{\"u}chern eine Liste mit m{\"o}glichen Kandidaten f{\"u}r Kompetenzen generiert. Diese Liste wurde als QI-Kategoriensystem verwendet, mit der sechs verschiedene didaktische Ans{\"a}tze analysiert wurden. Ein abschließender Verfeinerungsschritt erfolgte durch die {\"U}berpr{\"u}fung, welche der gefundenen Kompetenzen in allen vier Kernbereichen der Informatik (theoretische, technische, praktische und angewandte Informatik) Anwendung finden. Diese Methode wurde f{\"u}r die informatische Schulausbildung exemplarisch entwickelt und umgesetzt, ist aber ebenfalls ein geeignetes Vorgehen f{\"u}r die Identifizierung von Schl{\"u}sselkompetenzen in anderen Gebieten, wie z. B. in der informatischen Hochschulausbildung, und soll deshalb hier kurz vorgestellt werden.}, language = {de} } @article{MuellerFrommerHumbert2013, author = {M{\"u}ller, Dorothee and Frommer, Andreas and Humbert, Ludger}, title = {Informatik im Alltag}, series = {Commentarii informaticae didacticae : (CID)}, journal = {Commentarii informaticae didacticae : (CID)}, number = {5}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {1868-0844}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-64959}, pages = {98 -- 104}, year = {2013}, abstract = {Die Fachwissenschaft Informatik stellt Mittel bereit, deren Nutzung f{\"u}r Studierende heutzutage selbstverst{\"a}ndlich ist. Diese Tatsache darf uns allerdings nicht dar- {\"u}ber hinwegt{\"a}uschen, dass Studierende in der Regel keine Grundlage im Sinne einer informatischen Allgemeinbildung gem{\"a}{\"y} der Bildungsstandards der Gesellschaft f{\"u}r Informatik besitzen. Das Schulfach Informatik hat immer noch keinen durchg{\"a}ngigen Platz in den Stundentafeln der allgemein bildenden Schule gefunden. Zuk{\"u}nftigen Lehrkr{\"a}ften ist im Rahmen der bildungswissenschaftlichen Anteile im Studium eine hinreichende Medienkompetenz zu vermitteln. Mit der {\"u}berragenden Bedeutung der digitalen Medien kann dies nur auf der Grundlage einer ausreichenden informatischen Grundbildung erfolgen. Damit ist es angezeigt, ein Studienangebot bereitzustellen, das allen Studierenden ein Eintauchen in Elemente (Fachgebiete) der Fachwissenschaft Informatik aus der Sicht des Alltags bietet. An diesen Elementen werden exemplarisch verschiedene Aspekte der Fachwissenschaft beleuchtet, um einen Einblick in die Vielgestaltigkeit der Fragen und L{\"o}sungsstrategien der Informatik zu erlauben und so die informatische Grundbildung zu bef{\"o}rdern.}, language = {de} } @article{EhlenzBergnerSchroeder2016, author = {Ehlenz, Matthias and Bergner, Nadine and Schroeder, Ulrik}, title = {Synergieeffekte zwischen Fach- und Lehramtsstudierenden in Softwarepraktika}, series = {Commentarii informaticae didacticae (CID)}, journal = {Commentarii informaticae didacticae (CID)}, number = {10}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-376-3}, issn = {1868-0844}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-94875}, pages = {99 -- 102}, year = {2016}, abstract = {Dieser Beitrag diskutiert die Konzeption eines Software-Projektpraktikums im Bereich E-Learning, welches Lehramts- und Fachstudierenden der Informatik erm{\"o}glicht, voneinander zu profitieren und praxisrelevante Ergebnisse generiert. Vorbereitungen, Organisation und Durchf{\"u}hrung werden vorgestellt und diskutiert. Den Abschluss bildet ein Ausblick auf die Fortf{\"u}hrung des Konzepts und den Ausbau des Forschungsgebietes.}, language = {de} } @article{DennertMoellerGarmann2016, author = {Dennert-M{\"o}ller, Elisabeth and Garmann, Robert}, title = {Das „Startprojekt"}, series = {Commentarii informaticae didacticae (CID)}, journal = {Commentarii informaticae didacticae (CID)}, number = {10}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-376-3}, issn = {1868-0844}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-94780}, pages = {11 -- 23}, year = {2016}, abstract = {Absolventinnen und Absolventen unserer Informatik-Bachelorstudieng{\"a}nge ben{\"o}tigen f{\"u}r kompetentes berufliches Handeln sowohl fachliche als auch {\"u}berfachliche Kompetenzen. Vielfach verlangen wir von Erstsemestern in Grundlagen-Lehrveranstaltungen fast ausschließlich den Aufbau von Fachkompetenz und vernachl{\"a}ssigen dabei h{\"a}ufig Selbstkompetenz, Methodenkompetenz und Sozialkompetenz. Gerade die drei letztgenannten sind f{\"u}r ein erfolgreiches Studium unabdingbar und sollten von Anfang an entwickelt werden. Wir stellen unser „Startprojekt" als einen Beitrag vor, im ersten Semester die eigenverantwortliche, {\"u}berfachliche Kompetenzentwicklung in einem fachlichen Kontext zu f{\"o}rdern.}, language = {de} } @article{Kujath2016, author = {Kujath, Bertold}, title = {Lernwirksamkeits- und Zielgruppenanalyse f{\"u}r ein Lehrvideo zum informatischen Probleml{\"o}sen}, series = {Commentarii informaticae didacticae (CID)}, journal = {Commentarii informaticae didacticae (CID)}, number = {10}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-376-3}, issn = {1868-0844}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-94797}, pages = {25 -- 39}, year = {2016}, abstract = {Aus einer Vergleichsstudie mit starken und schwachen Probleml{\"o}sern konnten Erkenntnisse {\"u}ber die effizienten Herangehensweisen von Hochleistern an Informatikprobleme gewonnen werden. Diese Erkenntnisse wurden in einem Lehrvideo zum informatischen Probleml{\"o}sen didaktisch aufgearbeitet, sodass Lernenden der Einsatz von Baumstrukturen und Rekursion im konkreten Kontext gezeigt werden kann. Nun wurde die tats{\"a}chliche Lernwirksamkeit des Videos sowie die Definition der Zielgruppe in einer Vergleichsstudie mit 66 Studienanf{\"a}ngern {\"u}berpr{\"u}ft.}, language = {de} } @article{ZscheygeWeicker2016, author = {Zscheyge, Oliver and Weicker, Karsten}, title = {Werkzeugunterst{\"u}tzung bei der Vermittlung der Grundlagen wissenschaftlichen Schreibens}, series = {Commentarii informaticae didacticae (CID)}, journal = {Commentarii informaticae didacticae (CID)}, number = {10}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-376-3}, issn = {1868-0844}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-94814}, pages = {57 -- 68}, year = {2016}, abstract = {Der Unterricht großer Studierendengruppen im wissenschaftlichen Schreiben birgt vielf{\"a}ltige organisatorische Herausforderungen und eine zeitintensive Betreuung durch die Dozenten. Diese Arbeit stellt ein Lehrkonzept mit Peer-Reviews vor, in dem das Feedback der Peers durch eine automatisierte Analyse erg{\"a}nzt wird. Die Software Confopy liefert metrik- und strukturbasierte Hinweise f{\"u}r die Verbesserung des wissenschaftlichen Schreibstils. Der Nutzen von Confopy wird an 47 studentischen Arbeiten in Draft- und Final-Version illustriert.}, language = {de} } @article{BoehneKreitzKnobelsdorf2016, author = {B{\"o}hne, Sebastian and Kreitz, Christoph and Knobelsdorf, Maria}, title = {Mathematisches Argumentieren und Beweisen mit dem Theorembeweiser Coq}, series = {Commentarii informaticae didacticae (CID)}, journal = {Commentarii informaticae didacticae (CID)}, number = {10}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-376-3}, issn = {1868-0844}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-94824}, pages = {69 -- 80}, year = {2016}, abstract = {Informatik-Studierende haben in der Mehrzahl Schwierigkeiten, einen Einstieg in die Theoretische Informatik zu finden und die Leistungsanforderungen in den Endklausuren der zugeh{\"o}rigen Lehrveranstaltungen zu erf{\"u}llen. Wir argumentieren, dass dieser Symptomatik mangelnde Kompetenzen im Umgang mit abstrakten und stark formalisierten Themeninhalten zugrunde liegen und schlagen vor, einen Beweisassistenten als interaktives Lernwerkzeug in der Eingangslehre der Theoretischen Informatik zu nutzen, um entsprechende Kompetenzen zu st{\"a}rken.}, language = {de} } @article{SteenWisniewskiBenzmueller2016, author = {Steen, Alexander and Wisniewski, Max and Benzm{\"u}ller, Christoph}, title = {Einsatz von Theorembeweisern in der Lehre}, series = {Commentarii informaticae didacticae (CID)}, journal = {Commentarii informaticae didacticae (CID)}, number = {10}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-376-3}, issn = {1868-0844}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-94853}, pages = {81 -- 92}, year = {2016}, abstract = {Dieser Beitrag diskutiert den Einsatz von interaktiven und automatischen Theorembeweisern in der universit{\"a}ren Lehre. Moderne Theorembeweiser scheinen geeignet zur Implementierung des dialogischen Lernens und als E-Assessment-Werkzeug in der Logikausbilding. Exemplarisch skizzieren wir ein innovaties Lehrprojekt zum Thema „Komputationale Metaphysik", in dem die zuvor genannten Werkzeuge eingesetzt werden.}, language = {de} } @article{Gebhardt2016, author = {Gebhardt, Kai}, title = {Kooperative und kompetenzorientierte {\"U}bungen in der Softwaretechnik}, series = {Commentarii informaticae didacticae (CID)}, journal = {Commentarii informaticae didacticae (CID)}, number = {10}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-376-3}, issn = {1868-0844}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-94867}, pages = {95 -- 98}, year = {2016}, abstract = {Die Unterrichtsmethode Stationsarbeit kann verwendet werden, um Individualisierung und Differenzierung im Lernprozess zu erm{\"o}glichen. Dieser Beitrag schl{\"a}gt Aufgabenformate vor, die in einer Stationsarbeit {\"u}ber das Klassendiagramm aus der Unified Modeling Language verwendet werden k{\"o}nnen. Die Aufgabenformate wurden bereits mit Studierenden erprobt.}, language = {de} } @article{Teske2014, author = {Teske, Daniel}, title = {Geocoder accuracy ranking}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {161 -- 174}, year = {2014}, abstract = {Finding an address on a map is sometimes tricky: the chosen map application may be unfamiliar with the enclosed region. There are several geocoders on the market, they have different databases and algorithms to compute the query. Consequently, the geocoding results differ in their quality. Fortunately the geocoders provide a rich set of metadata. The workflow described in this paper compares this metadata with the aim to find out which geocoder is offering the best-fitting coordinate for a given address.}, language = {en} } @article{Sens2014, author = {Sens, Henriette}, title = {Web-Based map generalization tools put to the test: a jABC workflow}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {175 -- 185}, year = {2014}, abstract = {Geometric generalization is a fundamental concept in the digital mapping process. An increasing amount of spatial data is provided on the web as well as a range of tools to process it. This jABC workflow is used for the automatic testing of web-based generalization services like mapshaper.org by executing its functionality, overlaying both datasets before and after the transformation and displaying them visually in a .tif file. Mostly Web Services and command line tools are used to build an environment where ESRI shapefiles can be uploaded, processed through a chosen generalization service and finally visualized in Irfanview.}, language = {en} } @article{Noack2014, author = {Noack, Franziska}, title = {CREADED: Colored-Relief application for digital elevation data}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {186 -- 199}, year = {2014}, abstract = {In the geoinformatics field, remote sensing data is often used for analyzing the characteristics of the current investigation area. This includes DEMs, which are simple raster grids containing grey scales representing the respective elevation values. The project CREADED that is presented in this paper aims at making these monochrome raster images more significant and more intuitively interpretable. For this purpose, an executable interactive model for creating a colored and relief-shaded Digital Elevation Model (DEM) has been designed using the jABC framework. The process is based on standard jABC-SIBs and SIBs that provide specific GIS functions, which are available as Web services, command line tools and scripts.}, language = {en} } @article{Respondek2014, author = {Respondek, Tobias}, title = {A workflow for computing potential areas for wind turbines}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, pages = {200 -- 215}, year = {2014}, abstract = {This paper describes the implementation of a workflow model for service-oriented computing of potential areas for wind turbines in jABC. By implementing a re-executable model the manual effort of a multi-criteria site analysis can be reduced. The aim is to determine the shift of typical geoprocessing tools of geographic information systems (GIS) from the desktop to the web. The analysis is based on a vector data set and mainly uses web services of the "Center for Spatial Information Science and Systems" (CSISS). This paper discusses effort, benefits and problems associated with the use of the web services.}, language = {en} } @article{Scheele2014, author = {Scheele, Lasse}, title = {Location analysis for placing artificial reefs}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {216 -- 228}, year = {2014}, abstract = {Location analyses are among the most common tasks while working with spatial data and geographic information systems. Automating the most frequently used procedures is therefore an important aspect of improving their usability. In this context, this project aims to design and implement a workflow, providing some basic tools for a location analysis. For the implementation with jABC, the workflow was applied to the problem of finding a suitable location for placing an artificial reef. For this analysis three parameters (bathymetry, slope and grain size of the ground material) were taken into account, processed, and visualized with the The Generic Mapping Tools (GMT), which were integrated into the workflow as jETI-SIBs. The implemented workflow thereby showed that the approach to combine jABC with GMT resulted in an user-centric yet user-friendly tool with high-quality cartographic outputs.}, language = {en} } @article{Holler2014, author = {Holler, Robin}, title = {GraffDok - a graffiti documentation application}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {239 -- 251}, year = {2014}, abstract = {GraffDok is an application helping to maintain an overview over sprayed images somewhere in a city. At the time of writing it aims at vandalism rather than at beautiful photographic graffiti in an underpass. Looking at hundreds of tags and scribbles on monuments, house walls, etc. it would be interesting to not only record them in writing but even make them accessible electronically, including images. GraffDok's workflow is simple and only requires an EXIF-GPS-tagged photograph of a graffito. It automatically determines its location by using reverse geocoding with the given GPS-coordinates and the Gisgraphy WebService. While asking the user for some more meta data, GraffDok analyses the image in parallel with this and tries to detect fore- and background - before extracting the drawing lines and make them stand alone. The command line based tool ImageMagick is used here as well as for accessing EXIF data. Any meta data is written to csv-files, which will stay easily accessible and can be integrated in TeX-files as well. The latter ones are converted to PDF at the end of the workflow, containing a table about all graffiti and a summary for each - including the generated characteristic graffiti pattern image.}, language = {en} } @article{Reso2014, author = {Reso, Judith}, title = {Protein Classification Workflow}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, editor = {Lambrecht, Anna-Lena and Margaria, Tiziana}, publisher = {Springer Verlag}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {65 -- 72}, year = {2014}, abstract = {The protein classification workflow described in this report enables users to get information about a novel protein sequence automatically. The information is derived by different bioinformatic analysis tools which calculate or predict features of a protein sequence. Also, databases are used to compare the novel sequence with known proteins.}, language = {en} } @article{Schulze2014, author = {Schulze, Gunnar}, title = {Workflow for rapid metagenome analysis}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {88 -- 100}, year = {2014}, abstract = {Analyses of metagenomes in life sciences present new opportunities as well as challenges to the scientific community and call for advanced computational methods and workflows. The large amount of data collected from samples via next-generation sequencing (NGS) technologies render manual approaches to sequence comparison and annotation unsuitable. Rather, fast and efficient computational pipelines are needed to provide comprehensive statistics and summaries and enable the researcher to choose appropriate tools for more specific analyses. The workflow presented here builds upon previous pipelines designed for automated clustering and annotation of raw sequence reads obtained from next-generation sequencing technologies such as 454 and Illumina. Employing specialized algorithms, the sequence reads are processed at three different levels. First, raw reads are clustered at high similarity cutoff to yield clusters which can be exported as multifasta files for further analyses. Independently, open reading frames (ORFs) are predicted from raw reads and clustered at two strictness levels to yield sets of non-redundant sequences and ORF families. Furthermore, single ORFs are annotated by performing searches against the Pfam database}, language = {en} } @article{Vierheller2014, author = {Vierheller, Janine}, title = {Exploratory Data Analysis}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, editor = {Lambrecht, Anna-Lena and Margaria, Tiziana}, publisher = {Axel Springer Verlag}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {110 -- 126}, year = {2014}, abstract = {In bioinformatics the term exploratory data analysis refers to different methods to get an overview of large biological data sets. Hence, it helps to create a framework for further analysis and hypothesis testing. The workflow facilitates this first important step of the data analysis created by high-throughput technologies. The results are different plots showing the structure of the measurements. The goal of the workflow is the automatization of the exploratory data analysis, but also the flexibility should be guaranteed. The basic tool is the free software R.}, language = {en} } @article{Schuett2014, author = {Sch{\"u}tt, Christine}, title = {Identification of differentially expressed genes}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {127 -- 139}, year = {2014}, abstract = {With the jABC it is possible to realize workflows for numerous questions in different fields. The goal of this project was to create a workflow for the identification of differentially expressed genes. This is of special interest in biology, for it gives the opportunity to get a better insight in cellular changes due to exogenous stress, diseases and so on. With the knowledge that can be derived from the differentially expressed genes in diseased tissues, it becomes possible to find new targets for treatment.}, language = {en} } @article{Kuntzsch2014, author = {Kuntzsch, Christian}, title = {Visualization of data transfer paths}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {140 -- 148}, year = {2014}, abstract = {A workflow for visualizing server connections using the Google Maps API was built in the jABC. It makes use of three basic services: An XML-based IP address geolocation web service, a command line tool and the Static Maps API. The result of the workflow is an URL leading to an image file of a map, showing server connections between a client and a target host.}, language = {en} } @article{Hibbe2014, author = {Hibbe, Marcel}, title = {Spotlocator - Guess Where the Photo Was Taken!}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, editor = {Lambrecht, Anna-Lena and Margaria, Tiziana}, publisher = {Springer Verlag}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {149 -- 160}, year = {2014}, abstract = {Spotlocator is a game wherein people have to guess the spots of where photos were taken. The photos of a defined area for each game are from panoramio.com. They are published at http://spotlocator. drupalgardens.com with an ID. Everyone can guess the photo spots by sending a special tweet via Twitter that contains the hashtag \#spotlocator, the guessed coordinates and the ID of the photo. An evaluation is published for all tweets. The players are informed about the distance to the real photo spots and the positions are shown on a map.}, language = {en} } @article{Blaese2014, author = {Blaese, Leif}, title = {Data mining for unidentified protein squences}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {73 -- 87}, year = {2014}, abstract = {Through the use of next generation sequencing (NGS) technology, a lot of newly sequenced organisms are now available. Annotating those genes is one of the most challenging tasks in sequence biology. Here, we present an automated workflow to find homologue proteins, annotate sequences according to function and create a three-dimensional model.}, language = {en} } @article{Lis2014, author = {Lis, Monika}, title = {Constructing a Phylogenetic Tree}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, editor = {Lambrecht, Anna-Lena and Margaria, Tiziana}, publisher = {Springer Verlag}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {101 -- 109}, year = {2014}, abstract = {In this project I constructed a workflow that takes a DNA sequence as input and provides a phylogenetic tree, consisting of the input sequence and other sequences which were found during a database search. In this phylogenetic tree the sequences are arranged depending on similarities. In bioinformatics, constructing phylogenetic trees is often used to explore the evolutionary relationships of genes or organisms and to understand the mechanisms of evolution itself.}, language = {en} } @article{FroitzheimBergnerSchroeder2015, author = {Froitzheim, Manuel and Bergner, Nadine and Schroeder, Ulrik}, title = {Android-Workshop zur Vertiefung der Kenntnisse bez{\"u}glich Datenstrukturen und Programmierung in der Studieneingangsphase}, series = {HDI 2014 : Gestalten von {\"U}berg{\"a}ngen}, volume = {2015}, journal = {HDI 2014 : Gestalten von {\"U}berg{\"a}ngen}, number = {9}, editor = {Schwill, Andreas}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-80247}, pages = {11 -- 26}, year = {2015}, abstract = {Die Studieneingangsphase stellt f{\"u}r Studierende eine Schl{\"u}sselphase des terti{\"a}ren Ausbildungsabschnitts dar. Fachwissenschaftliches Wissen wird praxisfern vermittelt und die Studierenden k{\"o}nnen die Zusammenh{\"a}nge zwischen den Themenfeldern der verschiedenen Vorlesungen nicht erkennen. Zur Verbesserung der Situation wurde ein Workshop entwickelt, der die Verbindung der Programmierung und der Datenstrukturen vertieft. Dabei wird das Spiel Go-Moku1 als Android-App von den Studierenden selbst{\"a}ndig entwickelt. Die Kombination aus Software (Java, Android-SDK) und Hardware (Tablet-Computer) f{\"u}r ein kleines realistisches Softwareprojekt stellt f{\"u}r die Studierenden eine neue Erfahrung dar.}, language = {de} } @article{GrellSchaubSelbig2006, author = {Grell, Susanne and Schaub, Torsten H. and Selbig, Joachim}, title = {Modelling biological networks by action languages via set programming}, issn = {0302-9743}, doi = {10.1007/11799573}, year = {2006}, language = {en} } @article{DelgrandeSchaubTompits2006, author = {Delgrande, James Patrick and Schaub, Torsten H. and Tompits, Hans}, title = {A Preference-Based Framework for Updating logic Programs : preliminary reports}, year = {2006}, language = {en} } @article{GressmannJanhunenMerceretal.2006, author = {Gressmann, Jean and Janhunen, Tomi and Mercer, Robert E. and Schaub, Torsten H. and Thiele, Sven and Tichy, Richard}, title = {On probing and multi-threading in platypus}, year = {2006}, language = {en} } @article{AngerGebserSchaub2006, author = {Anger, Christian and Gebser, Martin and Schaub, Torsten H.}, title = {Approaching the core of unfounded sets}, year = {2006}, language = {en} } @article{ShenoyKrauledatBlankertzetal.2006, author = {Shenoy, Pradeep and Krauledat, Matthias and Blankertz, Benjamin and Rao, Rajesh P. N. and M{\"u}ller, Klaus-Robert}, title = {Towards adaptive classification for BCI}, doi = {10.1088/1741-2560/3/1/R02}, year = {2006}, abstract = {Non-stationarities are ubiquitous in EEG signals. They are especially apparent in the use of EEG-based brain- computer interfaces (BCIs): (a) in the differences between the initial calibration measurement and the online operation of a BCI, or (b) caused by changes in the subject's brain processes during an experiment (e.g. due to fatigue, change of task involvement, etc). In this paper, we quantify for the first time such systematic evidence of statistical differences in data recorded during offline and online sessions. Furthermore, we propose novel techniques of investigating and visualizing data distributions, which are particularly useful for the analysis of (non-) stationarities. Our study shows that the brain signals used for control can change substantially from the offline calibration sessions to online control, and also within a single session. In addition to this general characterization of the signals, we propose several adaptive classification schemes and study their performance on data recorded during online experiments. An encouraging result of our study is that surprisingly simple adaptive methods in combination with an offline feature selection scheme can significantly increase BCI performance}, language = {en} } @article{Bobda2009, author = {Bobda, Christophe}, title = {Special issue on ReCoSoC 2007 : editorial}, issn = {0141-9331}, doi = {10.1016/j.micpro.2009.01.001}, year = {2009}, language = {en} } @article{BlankertzDornhegeKrauledatetal.2006, author = {Blankertz, Benjamin and Dornhege, Guido and Krauledat, Matthias and M{\"u}ller, Klaus-Robert and Kunzmann, Volker and Losch, Florian and Curio, Gabriel}, title = {The Berlin brain-computer interface : EEG-based communication without subject training}, issn = {1534-4320}, doi = {10.1109/Tnsre.2006.875557}, year = {2006}, abstract = {The Berlin Brain-Computer Interface (BBCI) project develops a noninvasive BCI system whose key features are 1) the use of well-established motor competences as control paradigms, 2) high-dimensional features from 128-channel electroencephalogram (EEG), and 3) advanced machine learning techniques. As reported earlier, our experiments demonstrate that very high information transfer rates can be achieved using the readiness potential (RP) when predicting the laterality of upcoming left-versus right-hand movements in healthy subjects. A more recent study showed that the RP similarily accompanies phantom movements in arm amputees, but the signal strength decreases with longer loss of the limb. In a complementary approach, oscillatory features are used to discriminate imagined movements (left hand versus right hand versus foot). In a recent feedback study with six healthy subjects with no or very little experience with BCI control, three subjects achieved an information transfer rate above 35 bits per minute (bpm), and further two subjects above 24 and 15 bpm, while one subject could not achieve any BCI control. These results are encouraging for an EEG-based BCI system in untrained subjects that is independent of peripheral nervous system activity and does not rely on evoked potentials even when compared to results with very well-trained subjects operating other BCI systems}, language = {en} } @article{WilligMitschke2006, author = {Willig, Andreas and Mitschke, Robert}, title = {Results of bit error measurements with sensor nodes and casuistic consequences for design of energy-efficient error control schemes}, isbn = {978-3-540-32158-3}, year = {2006}, abstract = {For the proper design of energy-efficient error control schemes some insight into channel error patterns is needed. This paper presents bit error and packet loss measurements taken with sensor nodes running the popular RFM}, language = {en} } @article{RozinatVanderAalst2006, author = {Rozinat, A and Van der Aalst, Wil M. P.}, title = {Conformance testing: Measuring the fit and appropriateness of event logs and process models}, year = {2006}, abstract = {Most information systems log events (e.g., transaction logs, audit traits) to audit and monitor the processes they support. At the same time, many of these processes have been explicitly modeled. For example, SAP R/3 logs events in transaction logs and there are EPCs (Event-driven Process Chains) describing the so-called reference models. These reference models describe how the system should be used. The coexistence of event logs and process models raises an interesting question: "Does the event log conform to the process model and vice versa?". This paper demonstrates that there is not a simple answer to this question. To tackle the problem, we distinguish two dimensions of conformance: fitness (the event log may be the result of the process modeled) and appropriateness (the model is a likely candidate from a structural and behavioral point of view). Different metrics have been defined and a Conformance Checker has been implemented within the ProM Framework}, language = {en} } @article{GerbserSchaub2006, author = {Gerbser, Martin and Schaub, Torsten H.}, title = {Tableau calculi for answer set programming}, issn = {0302-9743}, doi = {10.1007/11799573}, year = {2006}, language = {en} } @article{Konczak2006, author = {Konczak, Kathrin}, title = {Voting Theory in Answer Set Programming}, year = {2006}, language = {en} } @article{AngerGebserJanhunenetal.2006, author = {Anger, Christian and Gebser, Martin and Janhunen, Tomi and Schaub, Torsten H.}, title = {What's a head without a body?}, year = {2006}, language = {en} } @article{GerbserLeeLierler2006, author = {Gerbser, Martin and Lee, Joohyung and Lierler, Yuliya}, title = {Elementary sets for logic programs}, isbn = {978-1-57735-281-5}, year = {2006}, language = {en} } @article{GerbserSchaub2006, author = {Gerbser, Martin and Schaub, Torsten H.}, title = {Characterizing (ASP) inferences by unit propagation}, year = {2006}, language = {en} } @article{Konczak2006, author = {Konczak, Kathrin}, title = {Weak order equivalence for Logic Programs with Prefernces}, year = {2006}, language = {en} } @article{DelgrandeSchaubTompits2007, author = {Delgrande, James Patrick and Schaub, Torsten H. and Tompits, Hans}, title = {A preference-based framework for updating logic programs}, isbn = {978-3-540- 72199-4}, year = {2007}, language = {en} } @article{MileoSchaub2007, author = {Mileo, Alessandra and Schaub, Torsten H.}, title = {Qualitative constraint enforcement in advanced policy specification}, year = {2007}, language = {en} } @article{DelgrandeLangSchaub2007, author = {Delgrande, James Patrick and Lang, J{\´e}r{\^o}me and Schaub, Torsten H.}, title = {Belief change based on global minimisation}, year = {2007}, language = {en} } @article{KonczakLinkeSchaub2006, author = {Konczak, Kathrin and Linke, Thomas and Schaub, Torsten H.}, title = {Graphs and colorings for answer set programming}, issn = {1471-0684}, doi = {10.1017/S1471068405002528}, year = {2006}, abstract = {We investigate the usage of rule dependency graphs and their colorings for characterizing and computing answer sets of logic programs. This approach provides us with insights into the interplay between rules when inducing answer sets. We start with different characterizations of answer sets in terms of totally colored dependency graphs that differ ill graph-theoretical aspects. We then develop a series of operational characterizations of answer sets in terms of operators on partial colorings. In analogy to the notion of a derivation in proof theory, our operational characterizations are expressed as (non-deterministically formed) sequences of colorings, turning an uncolored graph into a totally colored one. In this way, we obtain an operational framework in which different combinations of operators result in different formal properties. Among others, we identify the basic strategy employed by the noMoRe system and justify its algorithmic approach. Furthermore, we distinguish operations corresponding to Fitting's operator as well as to well-founded semantics}, language = {en} } @article{GebserSchaubThiele2007, author = {Gebser, Martin and Schaub, Torsten H. and Thiele, Sven}, title = {GrinGo : a new grounder for answer set programming}, isbn = {978-3-540- 72199-4}, year = {2007}, language = {en} } @article{KonczakVogel2005, author = {Konczak, Kathrin and Vogel, Ralf}, title = {Abduction and Preferences in Linguistics}, year = {2005}, language = {en} } @article{CaludeJurgensen2005, author = {Calude, C. S. and Jurgensen, Helmut}, title = {Is complexity a source of incompleteness?}, issn = {0196-8858}, year = {2005}, abstract = {In this paper we prove Chaitin's "heuristic principle," the theorems of a finitely-specified theory cannot be significantly more complex than the theory itself, for an appropriate measure of complexity. We show that the measure is invariant under the change of the Godel numbering. For this measure, the theorems of a finitely-specified, sound, consistent theory strong enough to formalize arithmetic which is arithmetically sound (like Zermelo-Fraenkel set theory with choice or Peano Arithmetic) have bounded complexity, hence every sentence of the theory which is significantly more complex than the theory is unprovable. Previous results showing that incompleteness is not accidental, but ubiquitous are here reinforced in probabilistic terms: the probability that a true sentence of length n is provable in the theory tends to zero when n tends to infinity, while the probability that a sentence of length n is true is strictly positive. (c) 2004 Elsevier Inc. All rights reserved}, language = {en} } @article{Bordihn2005, author = {Bordihn, Henning}, title = {On the number of components in cooperating distributed grammar systems}, issn = {0304-3975}, year = {2005}, abstract = {It is proved that the number of components in context-free cooperating distributed (CD) grammar systems can be reduced to 3 when they are working in the so-called sf-mode of derivation, which is the cooperation protocol which has been considered first for CD grammar systems. In this derivation mode, a component continues the derivation until and unless there is a nonterminal in the sentential form which cannot be rewritten according to that component. Moreover, it is shown that CD grammar systems in sf-mode with only one component can generate only the context-free languages but they can generate non-context-free languages if two components are used. The sf-mode of derivation is compared with other well-known cooperation protocols with respect to the hierarchies induced by the number of components. (C) 2004 Elsevier B.V. All rights reserved}, language = {en} } @article{BeerenwinkelSingLengaueretal.2005, author = {Beerenwinkel, Niko and Sing, Tobias and Lengauer, Thomas and Rahnenfuhrer, Joerg and Roomp, Kirsten and Savenkov, Igor and Fischer, Roman and Hoffmann, Daniel and Selbig, Joachim and Korn, Klaus and Walter, Hauke and Berg, Thomas and Braun, Patrick and Faetkenheuer, Gerd and Oette, Mark and Rockstroh, Juergen and Kupfer, Bernd and Kaiser, Rolf and Daeumer, Martin}, title = {Computational methods for the design of effective therapies against drug resistant HIV strains}, year = {2005}, abstract = {The development of drug resistance is a major obstacle to successful treatment of HIV infection. The extraordinary replication dynamics of HIV facilitates its escape from selective pressure exerted by the human immune system and by combination drug therapy. We have developed several computational methods whose combined use can support the design of optimal antiretroviral therapies based on viral genomic data}, language = {en} } @article{BrzozowskiJuergensen2005, author = {Brzozowski, J. A. and J{\"u}rgensen, Helmut}, title = {Representation of semiautomata by canonical words and equivalences}, issn = {0129-0541}, year = {2005}, abstract = {We study a novel representation of semiautomata, which is motivated by the method of trace-assertion specifications of software modules. Each state of the semiautomaton is represented by an arbitrary word leading to that state, the canonical word. The transitions of the semiautomaton give rise to a right congruence, the state-equivalence, on the set of input words of the semiautomaton: two words are state-equivalent if and only if they lead to the same state. We present a simple algorithm for finding a set of generators for state-equivalence. Directly from this set of generators, we construct a confluent prefix-rewriting system which permits us to transform any word to its canonical representative. In general, the rewriting system may allow infinite derivations. To address this issue, we impose the condition of prefix-continuity on the set of canonical words. A set is prefix-continuous if, whenever a word w and a prefix u of w axe in the set, then all the prefixes of w longer than u are also in the set. Prefix-continuous sets include prefix-free and prefix-closed sets as special cases. We prove that the rewriting system is Noetherian if and only if the set of canonical words is prefix-continuous. Furthermore, if the set of canonical words is prefix- continuous, then the set of rewriting rules is irredundant. We show that each prefix-continuous canonical set corresponds to a spanning forest of the semiautomaton}, language = {en} }