@article{ZienRaetschMikaetal.2000, author = {Zien, Alexander and R{\"a}tsch, Gunnar and Mika, Sebastian and Sch{\"o}lkopf, Bernhard and Lengauer, Thomas and M{\"u}ller, Klaus-Robert}, title = {Engineering support vector machine kernels that recognize translation initiation sites}, issn = {1367-4803}, year = {2000}, language = {en} } @article{ZieheMuellerNolteetal.2000, author = {Ziehe, Andreas and M{\"u}ller, Klaus-Robert and Nolte, G. and Mackert, B.-M. and Curio, Gabriel}, title = {Artifact reduction in magnetoneurography based on time-delayed second-order correlations}, year = {2000}, language = {en} } @article{ZieheKawanabeHarmeling2004, author = {Ziehe, Andreas and Kawanabe, Motoaki and Harmeling, Stefan}, title = {Blind separation of post-nonlinear mixtures using linearizing transformations and temporal decorrelation}, issn = {1532-4435}, year = {2004}, abstract = {We propose two methods that reduce the post-nonlinear blind source separation problem (PNL-BSS) to a linear BSS problem. The first method is based on the concept of maximal correlation: we apply the alternating conditional expectation (ACE) algorithm-a powerful technique from nonparametric statistics-to approximately invert the componentwise nonlinear functions. The second method is a Gaussianizing transformation, which is motivated by the fact that linearly mixed signals before nonlinear transformation are approximately Gaussian distributed. This heuristic, but simple and efficient procedure works as good as the ACE method. Using the framework provided by ACE, convergence can be proven. The optimal transformations obtained by ACE coincide with the sought-after inverse functions of the nonlinearitics. After equalizing the nonlinearities, temporal decorrelation separation (TDSEP) allows us to recover the source signals. Numerical simulations testing "ACE-TD" and "Gauss-TD" on realistic examples are performed with excellent results}, language = {en} } @article{ZenderMetzlerLucke2014, author = {Zender, Raphael and Metzler, Richard and Lucke, Ulrike}, title = {FreshUP-A pervasive educational game for freshmen}, series = {Pervasive and mobile computing}, volume = {14}, journal = {Pervasive and mobile computing}, publisher = {Elsevier}, address = {Amsterdam}, issn = {1574-1192}, doi = {10.1016/j.pmcj.2013.09.003}, pages = {47 -- 56}, year = {2014}, abstract = {Students beginning their studies at university face manifold problems such as orientation in a new environment and organizing their courses. This article presents the implementation and successful empirical evaluation of the pervasive browser-based educational game "FreshUP", which aims at helping to overcome the initial difficulties of freshmen. In contrast to a conventional scavenger hunt, mobile pervasive games like FreshUP, bridging in-game and real world activities, have the potential to provide help in a motivating manner using new technology which is currently becoming more and more common. (C) 2013 Elsevier B.V. All rights reserved.}, language = {en} } @article{WuebbelerZieheMackertetal.2000, author = {W{\"u}bbeler, G. and Ziehe, Andreas and Mackert, B.-M. and M{\"u}ller, Klaus-Robert and Trahms, L. and Curio, Gabriel}, title = {Independent component analysis of noninvasively recorded cortical magnetic DC-fields in humans}, year = {2000}, language = {en} } @article{WongBesnard2000, author = {Wong, P. and Besnard, Philippe}, title = {Paraconsistent reasoning as an analytical tool}, issn = {1367-0751}, year = {2000}, language = {en} } @article{WilligMitschke2006, author = {Willig, Andreas and Mitschke, Robert}, title = {Results of bit error measurements with sensor nodes and casuistic consequences for design of energy-efficient error control schemes}, isbn = {978-3-540-32158-3}, year = {2006}, abstract = {For the proper design of energy-efficient error control schemes some insight into channel error patterns is needed. This paper presents bit error and packet loss measurements taken with sensor nodes running the popular RFM}, language = {en} } @article{WilligMatheusWolisz2005, author = {Willig, Andreas and Matheus, K. and Wolisz, A.}, title = {Wireless technology in industrial networks}, issn = {0018-9219}, year = {2005}, abstract = {With the success of wireless technologies in consumer electronics, standard wireless technologies are envisioned for the deployment in industrial environments as well. Industrial applications involving mobile subsystems or just the desire to save cabling make wireless technologies attractive. Nevertheless, these applications often have stringent requirements on reliability and timing. In wired environments, timing and reliability are well catered for by fieldbus systems (which are a mature technology designed to enable communication between digital controllers and the sensors and actuators interfacing to a physical process). When wireless links are included, reliability and timing requirements are significantly more difficult to meet, due to the adverse properties of the radio channels. In this paper we thus discuss some key issues coming up in wireless fieldbus and wireless industrial communication systems:1)fundamental problems like achieving timely and reliable transmission despite channel errors; 2) the usage of existing wireless technologies for this specific field of applications; and 3) the creation of hybrid systems in which wireless stations are included into existing wired systems}, language = {en} } @article{Wildner1997, author = {Wildner, Uwe}, title = {Experimental evaluation of assigned signature checking with return address hashing on different platforms}, year = {1997}, language = {en} } @article{Wildner1996, author = {Wildner, Uwe}, title = {Compiler assisted self-checking of structural integrity using return adress hashing}, year = {1996}, language = {en} } @article{WeskevanderAalstVerbeek2004, author = {Weske, Mathias and van der Aalst, Wil M. P. and Verbeek, H. M. W.}, title = {Advances in business process management}, issn = {0169-023X}, year = {2004}, language = {en} } @article{WeiherHirschfeld2014, author = {Weiher, Marcel and Hirschfeld, Robert}, title = {Polymorphic identifiers: uniform resource access in objective-smalltalk}, series = {ACM SIGPLAN notices}, volume = {49}, journal = {ACM SIGPLAN notices}, number = {2}, publisher = {Association for Computing Machinery}, address = {New York}, issn = {0362-1340}, doi = {10.1145/2508168.2508169}, pages = {61 -- 71}, year = {2014}, abstract = {In object-oriented programming, polymorphic dispatch of operations decouples clients from specific providers of services and allows implementations to be modified or substituted without affecting clients. The Uniform Access Principle (UAP) tries to extend these qualities to resource access by demanding that access to state be indistinguishable from access to operations. Despite language features supporting the UAP, the overall goal of substitutability has not been achieved for either alternative resources such as keyed storage, files or web pages, or for alternate access mechanisms: specific kinds of resources are bound to specific access mechanisms and vice versa. Changing storage or access patterns either requires changes to both clients and service providers and trying to maintain the UAP imposes significant penalties in terms of code-duplication and/or performance overhead. We propose introducing first class identifiers as polymorphic names for storage locations to solve these problems. With these Polymorphic Identifiers, we show that we can provide uniform access to a wide variety of resource types as well as storage and access mechanisms, whether parametrized or direct, without affecting client code, without causing code duplication or significant performance penalties.}, language = {en} } @article{WeidlichMendlingWeske2011, author = {Weidlich, Matthias and Mendling, Jan and Weske, Mathias}, title = {Efficient consistency measurement based on behavioral profiles of process models}, series = {IEEE transactions on software engineering}, volume = {37}, journal = {IEEE transactions on software engineering}, number = {3}, publisher = {Inst. of Electr. and Electronics Engineers}, address = {Los Alamitos}, issn = {0098-5589}, doi = {10.1109/TSE.2010.96}, pages = {410 -- 429}, year = {2011}, abstract = {Engineering of process-driven business applications can be supported by process modeling efforts in order to bridge the gap between business requirements and system specifications. However, diverging purposes of business process modeling initiatives have led to significant problems in aligning related models at different abstract levels and different perspectives. Checking the consistency of such corresponding models is a major challenge for process modeling theory and practice. In this paper, we take the inappropriateness of existing strict notions of behavioral equivalence as a starting point. Our contribution is a concept called behavioral profile that captures the essential behavioral constraints of a process model. We show that these profiles can be computed efficiently, i.e., in cubic time for sound free-choice Petri nets w.r.t. their number of places and transitions. We use behavioral profiles for the definition of a formal notion of consistency which is less sensitive to model projections than common criteria of behavioral equivalence and allows for quantifying deviation in a metric way. The derivation of behavioral profiles and the calculation of a degree of consistency have been implemented to demonstrate the applicability of our approach. We also report the findings from checking consistency between partially overlapping models of the SAP reference model.}, language = {en} } @article{WangZhouLin2000, author = {Wang, Kewen and Zhou, Lizhu and Lin, Fangzhen}, title = {Alternating fixpoint theory for logic programs with priority}, isbn = {3-540-67797-6}, year = {2000}, language = {en} } @article{WangZhou2001, author = {Wang, Kewen and Zhou, Lizhu}, title = {An extension to GCWA and query evaluation for disjunctive deductive databases}, year = {2001}, language = {en} } @article{Wang2001, author = {Wang, Kewen}, title = {A comparative study of disjunctive well-founded semantics}, isbn = {3-540-42593-4}, year = {2001}, language = {en} } @article{Wang2001, author = {Wang, Kewen}, title = {Disjunctive well-founded semantics revisited}, year = {2001}, language = {en} } @article{Wang2001, author = {Wang, Kewen}, title = {A top-down procedure for disjucntive well-founded semantics}, year = {2001}, language = {en} } @article{Wang2001, author = {Wang, Kewen}, title = {A top-down procedure for disjucntive well-founded semantics}, isbn = {3-540-42254-4}, year = {2001}, language = {en} } @article{Wang2000, author = {Wang, Kewen}, title = {Argumentation-based abduction in disjunctive logic programming}, year = {2000}, language = {en} } @article{WaltonGordon2015, author = {Walton, Douglas and Gordon, Thomas F.}, title = {Formalizing informal logic}, series = {Informal logic : reasoning and argumentation in theory and practics}, volume = {35}, journal = {Informal logic : reasoning and argumentation in theory and practics}, number = {4}, publisher = {Centre for Research in Reasoning, Argumentation and Rhetoric, University of Windsor}, address = {Windsor}, issn = {0824-2577}, pages = {508 -- 538}, year = {2015}, abstract = {In this paper we investigate the extent to which formal argumentation models can handle ten basic characteristics of informal logic identified in the informal logic literature. By showing how almost all of these characteristics can be successfully modelled formally, we claim that good progress can be made toward the project of formalizing informal logic. Of the formal argumentation models available, we chose the Carneades Argumentation System (CAS), a formal, computational model of argument that uses argument graphs as its basis, structures of a kind very familiar to practitioners of informal logic through their use of argument diagrams.}, language = {en} } @article{WaitelonisJuergesSack2019, author = {Waitelonis, J{\"o}rg and J{\"u}rges, Henrik and Sack, Harald}, title = {Remixing entity linking evaluation datasets for focused benchmarking}, series = {Semantic Web}, volume = {10}, journal = {Semantic Web}, number = {2}, publisher = {IOS Press}, address = {Amsterdam}, issn = {1570-0844}, doi = {10.3233/SW-180334}, pages = {385 -- 412}, year = {2019}, abstract = {In recent years, named entity linking (NEL) tools were primarily developed in terms of a general approach, whereas today numerous tools are focusing on specific domains such as e.g. the mapping of persons and organizations only, or the annotation of locations or events in microposts. However, the available benchmark datasets necessary for the evaluation of NEL tools do not reflect this focalizing trend. We have analyzed the evaluation process applied in the NEL benchmarking framework GERBIL [in: Proceedings of the 24th International Conference on World Wide Web (WWW'15), International World Wide Web Conferences Steering Committee, Republic and Canton of Geneva, Switzerland, 2015, pp. 1133-1143, Semantic Web 9(5) (2018), 605-625] and all its benchmark datasets. Based on these insights we have extended the GERBIL framework to enable a more fine grained evaluation and in depth analysis of the available benchmark datasets with respect to different emphases. This paper presents the implementation of an adaptive filter for arbitrary entities and customized benchmark creation as well as the automated determination of typical NEL benchmark dataset properties, such as the extent of content-related ambiguity and diversity. These properties are integrated on different levels, which also enables to tailor customized new datasets out of the existing ones by remixing documents based on desired emphases. Besides a new system library to enrich provided NIF [in: International Semantic Web Conference (ISWC'13), Lecture Notes in Computer Science, Vol. 8219, Springer, Berlin, Heidelberg, 2013, pp. 98-113] datasets with statistical information, best practices for dataset remixing are presented, and an in depth analysis of the performance of entity linking systems on special focus datasets is presented.}, language = {en} } @article{VolkmannLinkeWaschulziketal.1998, author = {Volkmann, Gerald and Linke, Thomas and Waschulzik, Thomas and Ohmes, Rick and Schaub, Torsten H. and Wischnewsky, M.}, title = {HExProSA - ein hybrides Expertensystem zur Prozeßkontrolle und St{\"o}rfallanalyse von Abwasserbehandlungsanlagen : Erfahrungen bei der Evaluierung eines Prototypen}, year = {1998}, language = {de} } @article{Vierheller2014, author = {Vierheller, Janine}, title = {Exploratory Data Analysis}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, editor = {Lambrecht, Anna-Lena and Margaria, Tiziana}, publisher = {Axel Springer Verlag}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {110 -- 126}, year = {2014}, abstract = {In bioinformatics the term exploratory data analysis refers to different methods to get an overview of large biological data sets. Hence, it helps to create a framework for further analysis and hypothesis testing. The workflow facilitates this first important step of the data analysis created by high-throughput technologies. The results are different plots showing the structure of the measurements. The goal of the workflow is the automatization of the exploratory data analysis, but also the flexibility should be guaranteed. The basic tool is the free software R.}, language = {en} } @article{VidelaGuziolowskiEduatietal.2015, author = {Videla, Santiago and Guziolowski, Carito and Eduati, Federica and Thiele, Sven and Gebser, Martin and Nicolas, Jacques and Saez-Rodriguez, Julio and Schaub, Torsten H. and Siegel, Anne}, title = {Learning Boolean logic models of signaling networks with ASP}, series = {Theoretical computer science}, volume = {599}, journal = {Theoretical computer science}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0304-3975}, doi = {10.1016/j.tcs.2014.06.022}, pages = {79 -- 101}, year = {2015}, abstract = {Boolean networks provide a simple yet powerful qualitative modeling approach in systems biology. However, manual identification of logic rules underlying the system being studied is in most cases out of reach. Therefore, automated inference of Boolean logical networks from experimental data is a fundamental question in this field. This paper addresses the problem consisting of learning from a prior knowledge network describing causal interactions and phosphorylation activities at a pseudo-steady state, Boolean logic models of immediate-early response in signaling transduction networks. The underlying optimization problem has been so far addressed through mathematical programming approaches and the use of dedicated genetic algorithms. In a recent work we have shown severe limitations of stochastic approaches in this domain and proposed to use Answer Set Programming (ASP), considering a simpler problem setting. Herein, we extend our previous work in order to consider more realistic biological conditions including numerical datasets, the presence of feedback-loops in the prior knowledge network and the necessity of multi-objective optimization. In order to cope with such extensions, we propose several discretization schemes and elaborate upon our previous ASP encoding. Towards real-world biological data, we evaluate the performance of our approach over in silico numerical datasets based on a real and large-scale prior knowledge network. The correctness of our encoding and discretization schemes are dealt with in Appendices A-B. (C) 2014 Elsevier B.V. All rights reserved.}, language = {en} } @article{VandenhoutenBehrensSchnor2004, author = {Vandenhouten, Ralf and Behrens, Thomas and Schnor, Bettina}, title = {Entwicklung eines Gatewaysystems f{\"u}r telematikbasiertes Ger{\"a}temonitoring}, issn = {0949-8214}, year = {2004}, language = {de} } @article{vanHoolandVerborghDeWildeetal.2013, author = {van Hooland, Seth and Verborgh, Ruben and De Wilde, Max and Hercher, Johannes and Mannens, Erik and Van de Walle, Rik}, title = {Evaluating the success of vocabulary reconciliation for cultural heritage collections}, series = {Journal of the American Society for Information Science and Technology}, volume = {64}, journal = {Journal of the American Society for Information Science and Technology}, number = {3}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {1532-2882}, doi = {10.1002/asi.22763}, pages = {464 -- 479}, year = {2013}, abstract = {The concept of Linked Data has made its entrance in the cultural heritage sector due to its potential use for the integration of heterogeneous collections and deriving additional value out of existing metadata. However, practitioners and researchers alike need a better understanding of what outcome they can reasonably expect of the reconciliation process between their local metadata and established controlled vocabularies which are already a part of the Linked Data cloud. This paper offers an in-depth analysis of how a locally developed vocabulary can be successfully reconciled with the Library of Congress Subject Headings (LCSH) and the Arts and Architecture Thesaurus (AAT) through the help of a general-purpose tool for interactive data transformation (OpenRefine). Issues negatively affecting the reconciliation process are identified and solutions are proposed in order to derive maximum value from existing metadata and controlled vocabularies in an automated manner.}, language = {en} } @article{UflackerKowarkZeier2011, author = {Uflacker, Matthias and Kowark, Thomas and Zeier, Alexander}, title = {An instrument for real-time design interaction capture}, isbn = {978-3-642-13756-3}, year = {2011}, language = {en} } @article{Uflacker2010, author = {Uflacker, Matthias}, title = {Computational analysis of virtual team collaboration in teh early stages of engineering design}, isbn = {978-3-86956-036-6}, year = {2010}, language = {en} } @article{TroegerMerzky2014, author = {Troeger, Peter and Merzky, Andre}, title = {Towards standardized job submission and control in infrastructure clouds}, series = {Journal of grid computing}, volume = {12}, journal = {Journal of grid computing}, number = {1}, publisher = {Springer}, address = {Dordrecht}, issn = {1570-7873}, doi = {10.1007/s10723-013-9275-2}, pages = {111 -- 125}, year = {2014}, abstract = {The submission and management of computational jobs is a traditional part of utility computing environments. End users and developers of domain-specific software abstractions often have to deal with the heterogeneity of such batch processing systems. This lead to a number of application programming interface and job description standards in the past, which are implemented and established for cluster and Grid systems. With the recent rise of cloud computing as new utility computing paradigm, the standardized access to batch processing facilities operated on cloud resources becomes an important issue. Furthermore, the design of such a standard has to consider a tradeoff between feature completeness and the achievable level of interoperability. The article discusses this general challenge, and presents some existing standards with traditional cluster and Grid computing background that may be applicable to cloud environments. We present OCCI-DRMAA as one approach for standardized access to batch processing facilities hosted in a cloud.}, language = {en} } @article{TranPontelliBalduccinietal.2022, author = {Tran, Son Cao and Pontelli, Enrico and Balduccini, Marcello and Schaub, Torsten}, title = {Answer set planning}, series = {Theory and practice of logic programming}, journal = {Theory and practice of logic programming}, publisher = {Cambridge University Press}, address = {New York}, issn = {1471-0684}, doi = {10.1017/S1471068422000072}, pages = {73}, year = {2022}, abstract = {Answer Set Planning refers to the use of Answer Set Programming (ASP) to compute plans, that is, solutions to planning problems, that transform a given state of the world to another state. The development of efficient and scalable answer set solvers has provided a significant boost to the development of ASP-based planning systems. This paper surveys the progress made during the last two and a half decades in the area of answer set planning, from its foundations to its use in challenging planning domains. The survey explores the advantages and disadvantages of answer set planning. It also discusses typical applications of answer set planning and presents a set of challenges for future research.}, language = {en} } @article{TiwariPrakashGrossetal.2020, author = {Tiwari, Abhishek and Prakash, Jyoti and Groß, Sascha and Hammer, Christian}, title = {A large scale analysis of Android}, series = {The journal of systems and software}, volume = {170}, journal = {The journal of systems and software}, publisher = {Elsevier}, address = {New York}, issn = {0164-1212}, doi = {10.1016/j.jss.2020.110775}, pages = {17}, year = {2020}, abstract = {Many Android applications embed webpages via WebView components and execute JavaScript code within Android. Hybrid applications leverage dedicated APIs to load a resource and render it in a WebView. Furthermore, Android objects can be shared with the JavaScript world. However, bridging the interfaces of the Android and JavaScript world might also incur severe security threats: Potentially untrusted webpages and their JavaScript might interfere with the Android environment and its access to native features. No general analysis is currently available to assess the implications of such hybrid apps bridging the two worlds. To understand the semantics and effects of hybrid apps, we perform a large-scale study on the usage of the hybridization APIs in the wild. We analyze and categorize the parameters to hybridization APIs for 7,500 randomly selected and the 196 most popular applications from the Google Playstore as well as 1000 malware samples. Our results advance the general understanding of hybrid applications, as well as implications for potential program analyses, and the current security situation: We discovered thousands of flows of sensitive data from Android to JavaScript, the vast majority of which could flow to potentially untrustworthy code. Our analysis identified numerous web pages embedding vulnerabilities, which we exemplarily exploited. Additionally, we discovered a multitude of applications in which potentially untrusted JavaScript code may interfere with (trusted) Android objects, both in benign and malign applications.}, language = {en} } @article{ThonLandwehrDeRaedt2011, author = {Thon, Ingo and Landwehr, Niels and De Raedt, Luc}, title = {Stochastic relational processes efficient inference and applications}, series = {Machine learning}, volume = {82}, journal = {Machine learning}, number = {2}, publisher = {Springer}, address = {Dordrecht}, issn = {0885-6125}, doi = {10.1007/s10994-010-5213-8}, pages = {239 -- 272}, year = {2011}, abstract = {One of the goals of artificial intelligence is to develop agents that learn and act in complex environments. Realistic environments typically feature a variable number of objects, relations amongst them, and non-deterministic transition behavior. While standard probabilistic sequence models provide efficient inference and learning techniques for sequential data, they typically cannot fully capture the relational complexity. On the other hand, statistical relational learning techniques are often too inefficient to cope with complex sequential data. In this paper, we introduce a simple model that occupies an intermediate position in this expressiveness/efficiency trade-off. It is based on CP-logic (Causal Probabilistic Logic), an expressive probabilistic logic for modeling causality. However, by specializing CP-logic to represent a probability distribution over sequences of relational state descriptions and employing a Markov assumption, inference and learning become more tractable and effective. Specifically, we show how to solve part of the inference and learning problems directly at the first-order level, while transforming the remaining part into the problem of computing all satisfying assignments for a Boolean formula in a binary decision diagram. We experimentally validate that the resulting technique is able to handle probabilistic relational domains with a substantial number of objects and relations.}, language = {en} } @article{Thomas2010, author = {Thomas, Ivonne}, title = {Reliable digital identities for SOA and the Web}, isbn = {978-3-86956-036-6}, year = {2010}, language = {en} } @article{ThienenNoweskiRauthetal.2012, author = {Thienen, Julia von and Noweski, Christine and Rauth, Ingo and Meinel, Christoph and Lange, Sabine}, title = {If you want to know who are, tell me where you are : the importance of places}, year = {2012}, language = {en} } @article{ThienenNoweskiMeineletal.2011, author = {Thienen, Julia von and Noweski, Christine and Meinel, Christoph and Rauth, Ingo}, title = {The co-evolution of theory and practice in design thinking - or - "Mind the oddness trap!"}, isbn = {978-3-642-13756-3}, year = {2011}, language = {en} } @article{ThienenNoweskiMeineletal.2012, author = {Thienen, Julia von and Noweski, Christine and Meinel, Christoph and Lang, Sabine and Nicolai, Claudia and Bartz, Andreas}, title = {What can design thinking learn from behavior group theraphy?}, isbn = {978-3-642-31990-7}, year = {2012}, language = {en} } @article{ThielscherSchaub1995, author = {Thielscher, Michael and Schaub, Torsten H.}, title = {Default reasoning by deductive planning}, year = {1995}, language = {en} } @article{Teske2014, author = {Teske, Daniel}, title = {Geocoder accuracy ranking}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {161 -- 174}, year = {2014}, abstract = {Finding an address on a map is sometimes tricky: the chosen map application may be unfamiliar with the enclosed region. There are several geocoders on the market, they have different databases and algorithms to compute the query. Consequently, the geocoding results differ in their quality. Fortunately the geocoders provide a rich set of metadata. The workflow described in this paper compares this metadata with the aim to find out which geocoder is offering the best-fitting coordinate for a given address.}, language = {en} } @article{TavakoliAlirezazadehHedayatipouretal.2021, author = {Tavakoli, Hamad and Alirezazadeh, Pendar and Hedayatipour, Ava and Nasib, A. H. Banijamali and Landwehr, Niels}, title = {Leaf image-based classification of some common bean cultivars using discriminative convolutional neural networks}, series = {Computers and electronics in agriculture : COMPAG online ; an international journal}, volume = {181}, journal = {Computers and electronics in agriculture : COMPAG online ; an international journal}, publisher = {Elsevier}, address = {Amsterdam [u.a.]}, issn = {0168-1699}, doi = {10.1016/j.compag.2020.105935}, pages = {11}, year = {2021}, abstract = {In recent years, many efforts have been made to apply image processing techniques for plant leaf identification. However, categorizing leaf images at the cultivar/variety level, because of the very low inter-class variability, is still a challenging task. In this research, we propose an automatic discriminative method based on convolutional neural networks (CNNs) for classifying 12 different cultivars of common beans that belong to three various species. We show that employing advanced loss functions, such as Additive Angular Margin Loss and Large Margin Cosine Loss, instead of the standard softmax loss function for the classification can yield better discrimination between classes and thereby mitigate the problem of low inter-class variability. The method was evaluated by classifying species (level I), cultivars from the same species (level II), and cultivars from different species (level III), based on images from the leaf foreside and backside. The results indicate that the performance of the classification algorithm on the leaf backside image dataset is superior. The maximum mean classification accuracies of 95.86, 91.37 and 86.87\% were obtained at the levels I, II and III, respectively. The proposed method outperforms the previous relevant works and provides a reliable approach for plant cultivars identification.}, language = {en} } @article{Tarnick1995, author = {Tarnick, Steffen}, title = {Controllable self-checking checkers for conditional concurrent checking}, year = {1995}, language = {en} } @article{Tarnick1994, author = {Tarnick, Steffen}, title = {Bounding error masking in linear output space compression schemes}, year = {1994}, language = {en} } @article{Tarnick1994, author = {Tarnick, Steffen}, title = {Controllable self-checking checkers for conditional concurrent checking}, year = {1994}, language = {en} } @article{SugiyamaKawanabeMueller2004, author = {Sugiyama, Masashi and Kawanabe, Motoaki and M{\"u}ller, Klaus-Robert}, title = {Trading variance reduction with unbiasedness : the regularized subspace information criterion for robust model selection in kernel regression}, issn = {0899-7667}, year = {2004}, abstract = {A well-known result by Stein (1956) shows that in particular situations, biased estimators can yield better parameter estimates than their generally preferred unbiased counterparts. This letter follows the same spirit, as we will stabilize the unbiased generalization error estimates by regularization and finally obtain more robust model selection criteria for learning. We trade a small bias against a larger variance reduction, which has the beneficial effect of being more precise on a single training set. We focus on the subspace information criterion (SIC), which is an unbiased estimator of the expected generalization error measured by the reproducing kernel Hilbert space norm. SIC can be applied to the kernel regression, and it was shown in earlier experiments that a small regularization of SIC has a stabilization effect. However, it remained open how to appropriately determine the degree of regularization in SIC. In this article, we derive an unbiased estimator of the expected squared error, between SIC and the expected generalization error and propose determining the degree of regularization of SIC such that the estimator of the expected squared error is minimized. Computer simulations with artificial and real data sets illustrate that the proposed method works effectively for improving the precision of SIC, especially in the high-noise-level cases. We furthermore compare the proposed method to the original SIC, the cross-validation, and an empirical Bayesian method in ridge parameter selection, with good results}, language = {en} } @article{Strickroth2019, author = {Strickroth, Sven}, title = {PLATON}, series = {Education Sciences}, volume = {9}, journal = {Education Sciences}, number = {4}, publisher = {MDPI}, address = {Basel}, issn = {2227-7102}, doi = {10.3390/educsci9040254}, pages = {26}, year = {2019}, abstract = {Lesson planning is both an important and demanding task—especially as part of teacher training. This paper presents the requirements for a lesson planning system and evaluates existing systems regarding these requirements. One major drawback of existing software tools is that most are limited to a text- or form-based representation of the lesson designs. In this article, a new approach with a graphical, time-based representation with (automatic) analyses methods is proposed and the system architecture and domain model are described in detail. The approach is implemented in an interactive, web-based prototype called PLATON, which additionally supports the management of lessons in units as well as the modelling of teacher and student-generated resources. The prototype was evaluated in a study with 61 prospective teachers (bachelor's and master's preservice teachers as well as teacher trainees in post-university teacher training) in Berlin, Germany, with a focus on usability. The results show that this approach proofed usable for lesson planning and offers positive effects for the perception of time and self-reflection.}, language = {en} } @article{StoffelKunzGerber1997, author = {Stoffel, Dominik and Kunz, Wolfgang and Gerber, Stefan}, title = {And/Or reasoning graphs for determining prime implicants in multi-level combinational networks}, year = {1997}, language = {en} } @article{StoffelKunz1997, author = {Stoffel, Dominik and Kunz, Wolfgang}, title = {Record \& play : a structural fixed point iteration for sequential circuit verification}, isbn = {0-8186-8200-0}, year = {1997}, language = {en} } @article{StoffelKunz1996, author = {Stoffel, Dominik and Kunz, Wolfgang}, title = {Logic equivalence checking by optimization techniues}, year = {1996}, language = {en} } @article{SteuerHumburgSelbig2006, author = {Steuer, Ralf and Humburg, Peter and Selbig, Joachim}, title = {Validation and functional annotation of expression-based clusters based on gene ontology}, series = {BMC bioinformatics}, volume = {7}, journal = {BMC bioinformatics}, number = {380}, publisher = {BioMed Central}, address = {London}, issn = {1471-2105}, doi = {10.1186/1471-2105-7-380}, pages = {12}, year = {2006}, abstract = {Background: The biological interpretation of large-scale gene expression data is one of the paramount challenges in current bioinformatics. In particular, placing the results in the context of other available functional genomics data, such as existing bio-ontologies, has already provided substantial improvement for detecting and categorizing genes of interest. One common approach is to look for functional annotations that are significantly enriched within a group or cluster of genes, as compared to a reference group. Results: In this work, we suggest the information-theoretic concept of mutual information to investigate the relationship between groups of genes, as given by data-driven clustering, and their respective functional categories. Drawing upon related approaches (Gibbons and Roth, Genome Research 12: 1574-1581, 2002), we seek to quantify to what extent individual attributes are sufficient to characterize a given group or cluster of genes. Conclusion: We show that the mutual information provides a systematic framework to assess the relationship between groups or clusters of genes and their functional annotations in a quantitative way. Within this framework, the mutual information allows us to address and incorporate several important issues, such as the interdependence of functional annotations and combinatorial combinations of attributes. It thus supplements and extends the conventional search for overrepresented attributes within a group or cluster of genes. In particular taking combinations of attributes into account, the mutual information opens the way to uncover specific functional descriptions of a group of genes or clustering result. All datasets and functional annotations used in this study are publicly available. All scripts used in the analysis are provided as additional files.}, language = {en} } @article{SteinertStabernack2022, author = {Steinert, Fritjof and Stabernack, Benno}, title = {Architecture of a low latency H.264/AVC video codec for robust ML based image classification how region of interests can minimize the impact of coding artifacts}, series = {Journal of Signal Processing Systems for Signal, Image, and Video Technology}, volume = {94}, journal = {Journal of Signal Processing Systems for Signal, Image, and Video Technology}, number = {7}, publisher = {Springer}, address = {New York}, issn = {1939-8018}, doi = {10.1007/s11265-021-01727-2}, pages = {693 -- 708}, year = {2022}, abstract = {The use of neural networks is considered as the state of the art in the field of image classification. A large number of different networks are available for this purpose, which, appropriately trained, permit a high level of classification accuracy. Typically, these networks are applied to uncompressed image data, since a corresponding training was also carried out using image data of similar high quality. However, if image data contains image errors, the classification accuracy deteriorates drastically. This applies in particular to coding artifacts which occur due to image and video compression. Typical application scenarios for video compression are narrowband transmission channels for which video coding is required but a subsequent classification is to be carried out on the receiver side. In this paper we present a special H.264/Advanced Video Codec (AVC) based video codec that allows certain regions of a picture to be coded with near constant picture quality in order to allow a reliable classification using neural networks, whereas the remaining image will be coded using constant bit rate. We have combined this feature with the ability to run with lowest latency properties, which is usually also required in remote control applications scenarios. The codec has been implemented as a fully hardwired High Definition video capable hardware architecture which is suitable for Field Programmable Gate Arrays.}, language = {en} } @article{SteinertHirschfeld2012, author = {Steinert, Bastian and Hirschfeld, Robert}, title = {Applying design knowledge to programming}, year = {2012}, language = {en} } @article{SteinertCassouHirschfeld2013, author = {Steinert, Bastian and Cassou, Damien and Hirschfeld, Robert}, title = {CoExist overcoming aversion to change preserving immediate access to source code and run-time information of previous development states}, series = {ACM SIGPLAN notices}, volume = {48}, journal = {ACM SIGPLAN notices}, number = {2}, publisher = {Association for Computing Machinery}, address = {New York}, issn = {0362-1340}, doi = {10.1145/2480360.2384591}, pages = {107 -- 117}, year = {2013}, abstract = {Programmers make many changes to the program to eventually find a good solution for a given task. In this course of change, every intermediate development state can of value, when, for example, a promising ideas suddenly turn out inappropriate or the interplay of objects turns out more complex than initially expected before making changes. Programmers would benefit from tool support that provides immediate access to source code and run-time of previous development states of interest. We present IDE extensions, implemented for Squeak/Smalltalk, to preserve, retrieve, and work with this information. With such tool support, programmers can work without worries because they can rely on tools that help them with whatever their explorations will reveal. They no longer have to follow certain best practices only to avoid undesired consequences of changing code.}, language = {en} } @article{Stede2020, author = {Stede, Manfred}, title = {From connectives to coherence relations}, series = {Revue roumaine de linguistique : RRL = Romanian review of linguistics}, volume = {65}, journal = {Revue roumaine de linguistique : RRL = Romanian review of linguistics}, number = {3}, publisher = {Ed. Academiei Rom{\^a}ne}, address = {Bucure{\c{s}}ti}, issn = {0035-3957}, pages = {213 -- 233}, year = {2020}, abstract = {The notion of coherence relations is quite widely accepted in general, but concrete proposals differ considerably on the questions of how they should be motivated, which relations are to be assumed, and how they should be defined. This paper takes a "bottom-up" perspective by assessing the contribution made by linguistic signals (connectives), using insights from the relevant literature as well as verification by practical text annotation. We work primarily with the German language here and focus on the realm of contrast. Thus, we suggest a new inventory of contrastive connective functions and discuss their relationship to contrastive coherence relations that have been proposed in earlier work.}, language = {en} } @article{SrinivasanSenthilkumarMohamedetal.2012, author = {Srinivasan, K. and Senthilkumar, D. V. and Mohamed, I. Raja and Murali, K. and Lakshmanan, M. and Kurths, J{\"u}rgen}, title = {Anticipating, complete and lag synchronizations in RC phase-shift network based coupled Chua's circuits without delay}, series = {Chaos : an interdisciplinary journal of nonlinear science}, volume = {22}, journal = {Chaos : an interdisciplinary journal of nonlinear science}, number = {2}, publisher = {American Institute of Physics}, address = {Melville}, issn = {1054-1500}, doi = {10.1063/1.4711375}, pages = {8}, year = {2012}, abstract = {We construct a new RC phase shift network based Chua's circuit, which exhibits a period-doubling bifurcation route to chaos. Using coupled versions of such a phase-shift network based Chua's oscillators, we describe a new method for achieving complete synchronization (CS), approximate lag synchronization (LS), and approximate anticipating synchronization (AS) without delay or parameter mismatch. Employing the Pecora and Carroll approach, chaos synchronization is achieved in coupled chaotic oscillators, where the drive system variables control the response system. As a result, AS or LS or CS is demonstrated without using a variable delay line both experimentally and numerically.}, language = {en} } @article{Sommerfeld1994, author = {Sommerfeld, Erdmute}, title = {Operations on cognitive structures : their modelling on the basis of graph theory}, year = {1994}, language = {en} } @article{SogomonyanSinghGoessel1998, author = {Sogomonyan, Egor S. and Singh, Adit D. and G{\"o}ssel, Michael}, title = {A scan based concrrent BIST approach for low cost on-line testing}, year = {1998}, language = {en} } @article{SogomonyanSinghGoessel1999, author = {Sogomonyan, Egor S. and Singh, Adit D. and G{\"o}ssel, Michael}, title = {A multi-mode scannable memory element for high test application efficiency and delay testing}, year = {1999}, language = {en} } @article{SogomonyanSinghGoessel1998, author = {Sogomonyan, Egor S. and Singh, Adit D. and G{\"o}ssel, Michael}, title = {A multi-mode scannable memory element for high test application efficiency and delay testing}, year = {1998}, language = {en} } @article{SogomonyanGoessel1995, author = {Sogomonyan, Egor S. and G{\"o}ssel, Michael}, title = {A new parity preserving multi-input signature analyser}, year = {1995}, language = {en} } @article{SogomonyanGoessel1996, author = {Sogomonyan, Egor S. and G{\"o}ssel, Michael}, title = {Concurrently self-testing embedded checkers for ultra-reliable fault-tolerant systems}, year = {1996}, language = {en} } @article{SinghSogomonyanGoesseletal.1999, author = {Singh, Adit D. and Sogomonyan, Egor S. and G{\"o}ssel, Michael and Seuring, Markus}, title = {Testability evaluation of sequential designs incorporating the multi-mode scannable memory element}, year = {1999}, language = {en} } @article{ShenoyKrauledatBlankertzetal.2006, author = {Shenoy, Pradeep and Krauledat, Matthias and Blankertz, Benjamin and Rao, Rajesh P. N. and M{\"u}ller, Klaus-Robert}, title = {Towards adaptive classification for BCI}, doi = {10.1088/1741-2560/3/1/R02}, year = {2006}, abstract = {Non-stationarities are ubiquitous in EEG signals. They are especially apparent in the use of EEG-based brain- computer interfaces (BCIs): (a) in the differences between the initial calibration measurement and the online operation of a BCI, or (b) caused by changes in the subject's brain processes during an experiment (e.g. due to fatigue, change of task involvement, etc). In this paper, we quantify for the first time such systematic evidence of statistical differences in data recorded during offline and online sessions. Furthermore, we propose novel techniques of investigating and visualizing data distributions, which are particularly useful for the analysis of (non-) stationarities. Our study shows that the brain signals used for control can change substantially from the offline calibration sessions to online control, and also within a single session. In addition to this general characterization of the signals, we propose several adaptive classification schemes and study their performance on data recorded during online experiments. An encouraging result of our study is that surprisingly simple adaptive methods in combination with an offline feature selection scheme can significantly increase BCI performance}, language = {en} } @article{SeuringGoesselSogomonyan1998, author = {Seuring, Markus and G{\"o}ssel, Michael and Sogomonyan, Egor S.}, title = {A structural approach for space compaction for concurrent checking and BIST}, year = {1998}, language = {en} } @article{SeuringGoesselSogomonyan1998, author = {Seuring, Markus and G{\"o}ssel, Michael and Sogomonyan, Egor S.}, title = {Ein strukturelles Verfahren zur Kompaktierung von Schaltungsausgaben f{\"u}r online-Fehlererkennungen und Selbstests}, year = {1998}, language = {de} } @article{SeuringGoessel1999, author = {Seuring, Markus and G{\"o}ssel, Michael}, title = {A structural approach for space compaction for sequential circuits}, year = {1999}, language = {en} } @article{SeuringGoessel1999, author = {Seuring, Markus and G{\"o}ssel, Michael}, title = {A structural method for output compaction of sequential automata implemented as circuits}, year = {1999}, language = {en} } @article{Seuring1999, author = {Seuring, Markus}, title = {Built-in self test mit multi-mode scannable memory elementen}, year = {1999}, language = {en} } @article{Sens2014, author = {Sens, Henriette}, title = {Web-Based map generalization tools put to the test: a jABC workflow}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {175 -- 185}, year = {2014}, abstract = {Geometric generalization is a fundamental concept in the digital mapping process. An increasing amount of spatial data is provided on the web as well as a range of tools to process it. This jABC workflow is used for the automatic testing of web-based generalization services like mapshaper.org by executing its functionality, overlaying both datasets before and after the transformation and displaying them visually in a .tif file. Mostly Web Services and command line tools are used to build an environment where ESRI shapefiles can be uploaded, processed through a chosen generalization service and finally visualized in Irfanview.}, language = {en} } @article{Schuett2014, author = {Sch{\"u}tt, Christine}, title = {Identification of differentially expressed genes}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {127 -- 139}, year = {2014}, abstract = {With the jABC it is possible to realize workflows for numerous questions in different fields. The goal of this project was to create a workflow for the identification of differentially expressed genes. This is of special interest in biology, for it gives the opportunity to get a better insight in cellular changes due to exogenous stress, diseases and so on. With the knowledge that can be derived from the differentially expressed genes in diseased tissues, it becomes possible to find new targets for treatment.}, language = {en} } @article{Schoebel2010, author = {Sch{\"o}bel, Michael}, title = {A runtime environment for online processing of operating system kernel events}, isbn = {978-3-86956-036-6}, year = {2010}, language = {en} } @article{Schwill1996, author = {Schwill, Andreas}, title = {Un approccio uniforme all'insegnamento dell'Informatica}, year = {1996}, language = {it} } @article{Schwill1997, author = {Schwill, Andreas}, title = {Computer science education based on fundamental ideas}, year = {1997}, language = {en} } @article{Schwill1997, author = {Schwill, Andreas}, title = {Fundamental ideas : rethinking computer science education}, year = {1997}, language = {en} } @article{Schwill1997, author = {Schwill, Andreas}, title = {Grafische Datenverarbeitung : eine fruchtbare Verbindung von Mathematik und Informatik}, year = {1997}, language = {de} } @article{Schwill2002, author = {Schwill, Andreas}, title = {Modelle in der Fachsprache der Informatik}, isbn = {3-88579-351-2}, year = {2002}, language = {de} } @article{Schwill2001, author = {Schwill, Andreas}, title = {Ab wann kann man mit Indern Informatik machen? : eine Studie {\"u}ber informatische F{\"a}higkeiten von Kindern}, year = {2001}, language = {de} } @article{Schwill2001, author = {Schwill, Andreas}, title = {Gedanken zur Lehramtsausbildung Informatik}, isbn = {3-85133-022-6}, year = {2001}, language = {de} } @article{Schwill2001, author = {Schwill, Andreas}, title = {Die Vielfalt der Modelle in der Informatik}, isbn = {3-88579-334-2}, year = {2001}, language = {de} } @article{Schwill2000, author = {Schwill, Andreas}, title = {Bericht zur Arbeitsgruppe "Modellbildung und f{\"a}cher{\"u}bergreifender Unterricht"}, isbn = {3-88120-314-1}, year = {2000}, language = {de} } @article{Schwill2000, author = {Schwill, Andreas}, title = {Modellbildung im Schulfach Informatik}, isbn = {3-88120-301-x}, year = {2000}, language = {de} } @article{Schulze2014, author = {Schulze, Gunnar}, title = {Workflow for rapid metagenome analysis}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {88 -- 100}, year = {2014}, abstract = {Analyses of metagenomes in life sciences present new opportunities as well as challenges to the scientific community and call for advanced computational methods and workflows. The large amount of data collected from samples via next-generation sequencing (NGS) technologies render manual approaches to sequence comparison and annotation unsuitable. Rather, fast and efficient computational pipelines are needed to provide comprehensive statistics and summaries and enable the researcher to choose appropriate tools for more specific analyses. The workflow presented here builds upon previous pipelines designed for automated clustering and annotation of raw sequence reads obtained from next-generation sequencing technologies such as 454 and Illumina. Employing specialized algorithms, the sequence reads are processed at three different levels. First, raw reads are clustered at high similarity cutoff to yield clusters which can be exported as multifasta files for further analyses. Independently, open reading frames (ORFs) are predicted from raw reads and clustered at two strictness levels to yield sets of non-redundant sequences and ORF families. Furthermore, single ORFs are annotated by performing searches against the Pfam database}, language = {en} } @article{SchulmeisterScheller1996, author = {Schulmeister, Thomas and Scheller, Frieder W.}, title = {The mathematics of exponential signal amplification in amperometric three enzyme electrodes}, year = {1996}, language = {en} } @article{SchulmeisterRoseVoigt1996, author = {Schulmeister, Thomas and Rose, J{\"u}rgen and Voigt, Horst}, title = {Some extensions of Schmidt's partition method for sequence comparison based on binary character amino acid properties}, year = {1996}, language = {en} } @article{SchubertGloedeHegewaldetal.1994, author = {Schubert, Wolfgang and Gl{\"o}de, Dirk and Hegewald, Eberhard and Koutzevlov, Atanas}, title = {ESF-Abschlußbericht}, publisher = {Univ.}, address = {Potsdam}, year = {1994}, language = {de} } @article{SchroederPreikschatGiloi1995, author = {Schr{\"o}der-Preikschat, Wolfgang and Giloi, Wolfgang K.}, title = {The next generation parallel architecture - multiple executing threads}, year = {1995}, language = {en} } @article{SchroederPreikschatGarnatzHaacketal.1996, author = {Schr{\"o}der-Preikschat, Wolfgang and Garnatz, Thomas and Haack, Ute and Sander, Michael}, title = {Experience made with the design and development of a message-passing kernel for a dual-processor-node parallel computer}, year = {1996}, language = {en} } @article{SchroederPreikschat1995, author = {Schr{\"o}der-Preikschat, Wolfgang}, title = {Experience developing an object-oriented parallel operating system}, year = {1995}, language = {en} } @article{SchroederPreikschat1994, author = {Schr{\"o}der-Preikschat, Wolfgang}, title = {PEACE - software backplane for parallel computing}, year = {1994}, language = {en} } @article{SchrapeAndjelkovicBreitenreiteretal.2021, author = {Schrape, Oliver and Andjelkovic, Marko and Breitenreiter, Anselm and Zeidler, Steffen and Balashov, Alexey and Krstić, Miloš}, title = {Design and evaluation of radiation-hardened standard cell flip-flops}, series = {IEEE transactions on circuits and systems : a publication of the IEEE Circuits and Systems Society: 1, Regular papers}, volume = {68}, journal = {IEEE transactions on circuits and systems : a publication of the IEEE Circuits and Systems Society: 1, Regular papers}, number = {11}, publisher = {Inst. of Electr. and Electronics Engineers}, address = {New York, NY}, issn = {1549-8328}, doi = {10.1109/TCSI.2021.3109080}, pages = {4796 -- 4809}, year = {2021}, abstract = {Use of a standard non-rad-hard digital cell library in the rad-hard design can be a cost-effective solution for space applications. In this paper we demonstrate how a standard non-rad-hard flip-flop, as one of the most vulnerable digital cells, can be converted into a rad-hard flip-flop without modifying its internal structure. We present five variants of a Triple Modular Redundancy (TMR) flip-flop: baseline TMR flip-flop, latch-based TMR flip-flop, True-Single Phase Clock (TSPC) TMR flip-flop, scannable TMR flip-flop and self-correcting TMR flipflop. For all variants, the multi-bit upsets have been addressed by applying special placement constraints, while the Single Event Transient (SET) mitigation was achieved through the usage of customized SET filters and selection of optimal inverter sizes for the clock and reset trees. The proposed flip-flop variants feature differing performance, thus enabling to choose the optimal solution for every sensitive node in the circuit, according to the predefined design constraints. Several flip-flop designs have been validated on IHP's 130nm BiCMOS process, by irradiation of custom-designed shift registers. It has been shown that the proposed TMR flip-flops are robust to soft errors with a threshold Linear Energy Transfer (LET) from (32.4 MeV.cm(2)/mg) to (62.5 MeV.cm(2)/mg), depending on the variant.}, language = {en} } @article{ScholzKaplanGuyetal.2005, author = {Scholz, Matthias and Kaplan, F. and Guy, C. L. and Kopka, Joachim and Selbig, Joachim}, title = {Non-linear PCA : a missing data approach}, issn = {1367-4803}, year = {2005}, abstract = {Motivation: Visualizing and analysing the potential non-linear structure of a dataset is becoming an important task in molecular biology. This is even more challenging when the data have missing values. Results: Here, we propose an inverse model that performs non-linear principal component analysis (NLPCA) from incomplete datasets. Missing values are ignored while optimizing the model, but can be estimated afterwards. Results are shown for both artificial and experimental datasets. In contrast to linear methods, non-linear methods were able to give better missing value estimations for non-linear structured data. Application: We applied this technique to a time course of metabolite data from a cold stress experiment on the model plant Arabidopsis thaliana, and could approximate the mapping function from any time point to the metabolite responses. Thus, the inverse NLPCA provides greatly improved information for better understanding the complex response to cold stress}, language = {en} } @article{SchneiderBrickDziobek2020, author = {Schneider, Jan Niklas and Brick, Timothy R. and Dziobek, Isabel}, title = {Distance to the neutral face predicts arousal ratings of dynamic facial expressions in individuals with and without Autism Spectrum Disorder}, series = {Frontiers in psychology}, volume = {11}, journal = {Frontiers in psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2020.577494}, pages = {15}, year = {2020}, abstract = {Arousal is one of the dimensions of core affect and frequently used to describe experienced or observed emotional states. While arousal ratings of facial expressions are collected in many studies it is not well understood how arousal is displayed in or interpreted from facial expressions. In the context of socioemotional disorders such as Autism Spectrum Disorder, this poses the question of a differential use of facial information for arousal perception. In this study, we demonstrate how automated face-tracking tools can be used to extract predictors of arousal judgments. We find moderate to strong correlations among all measures of static information on one hand and all measures of dynamic information on the other. Based on these results, we tested two measures, average distance to the neutral face and average facial movement speed, within and between neurotypical individuals (N = 401) and individuals with autism (N = 19). Distance to the neutral face was predictive of arousal in both groups. Lower mean arousal ratings were found for the autistic group, but no difference in correlation of the measures and arousal ratings could be found between groups. Results were replicated in an high autistic traits group. The findings suggest a qualitatively similar perception of arousal for individuals with and without autism. No correlations between valence ratings and any of the measures could be found, emphasizing the specificity of our tested measures. Distance and speed predictors share variability and thus speed should not be discarded as a predictor of arousal ratings.}, language = {en} } @article{SchneidenbachSchnorPetri2003, author = {Schneidenbach, Lars and Schnor, Bettina and Petri, Stefan}, title = {Architecture and Implementation of the Socket Interface on Top of GAMMA}, isbn = {0-7695-2037-5}, year = {2003}, language = {en} } @article{SchneidenbachSchnor2007, author = {Schneidenbach, Lars and Schnor, Bettina}, title = {Design Issues in the Implementation of MPI2 One Sided Communication in Ethernet based Networks}, isbn = {978-0-88986-637-9}, year = {2007}, abstract = {In current research, one sided communication of the MPI2 standard is pushed as a promising technique [6, 7, 10, 18]. But measurements of applications and MPI2 primitives show a different picture [17]. In this paper we analyze de sign issues of MPI2 one sided communication and its im plementations. We focus on asynchronous communication for parallel applications in Ethernet cluster environments. Further, one sided communication is compared to two sided communication. This paper will prove that the key problem to performance is not only the implementation of MPI2 one sided communication - it is the design.}, language = {en} } @article{SchneidenbachSchnor2005, author = {Schneidenbach, Lars and Schnor, Bettina}, title = {Migration of MPI Applications to IPv6 Networks}, isbn = {0-88986-468-3}, year = {2005}, language = {en} } @article{SchmidtBergBuettneretal.1996, author = {Schmidt, Henning and Berg, Ralph and B{\"u}ttner, Lars and Cordson, J{\"o}rg and Luther, Eva-Maria and Sch{\"o}n, Friedrich}, title = {PEACE - Beispiel einer anwendungsorientierten Betriebssystemstruktur}, year = {1996}, language = {de} } @article{Schmidt2010, author = {Schmidt, Alexander}, title = {Automatic extraction of locking protocols}, isbn = {978-3-86956-036-6}, year = {2010}, language = {en} } @article{SchirrmannLandwehrGiebeletal.2021, author = {Schirrmann, Michael and Landwehr, Niels and Giebel, Antje and Garz, Andreas and Dammer, Karl-Heinz}, title = {Early detection of stripe rust in winter wheat using deep residual neural networks}, series = {Frontiers in plant science : FPLS}, volume = {12}, journal = {Frontiers in plant science : FPLS}, publisher = {Frontiers Media}, address = {Lausanne}, issn = {1664-462X}, doi = {10.3389/fpls.2021.469689}, pages = {14}, year = {2021}, abstract = {Stripe rust (Pst) is a major disease of wheat crops leading untreated to severe yield losses. The use of fungicides is often essential to control Pst when sudden outbreaks are imminent. Sensors capable of detecting Pst in wheat crops could optimize the use of fungicides and improve disease monitoring in high-throughput field phenotyping. Now, deep learning provides new tools for image recognition and may pave the way for new camera based sensors that can identify symptoms in early stages of a disease outbreak within the field. The aim of this study was to teach an image classifier to detect Pst symptoms in winter wheat canopies based on a deep residual neural network (ResNet). For this purpose, a large annotation database was created from images taken by a standard RGB camera that was mounted on a platform at a height of 2 m. Images were acquired while the platform was moved over a randomized field experiment with Pst-inoculated and Pst-free plots of winter wheat. The image classifier was trained with 224 x 224 px patches tiled from the original, unprocessed camera images. The image classifier was tested on different stages of the disease outbreak. At patch level the image classifier reached a total accuracy of 90\%. To test the image classifier on image level, the image classifier was evaluated with a sliding window using a large striding length of 224 px allowing for fast test performance. At image level, the image classifier reached a total accuracy of 77\%. Even in a stage with very low disease spreading (0.5\%) at the very beginning of the Pst outbreak, a detection accuracy of 57\% was obtained. Still in the initial phase of the Pst outbreak with 2 to 4\% of Pst disease spreading, detection accuracy with 76\% could be attained. With further optimizations, the image classifier could be implemented in embedded systems and deployed on drones, vehicles or scanning systems for fast mapping of Pst outbreaks.}, language = {en} } @article{SchickBojahrHerzogetal.2014, author = {Schick, Daniel and Bojahr, Andre and Herzog, Marc and Shayduk, Roman and von Korff Schmising, Clemens and Bargheer, Matias}, title = {Udkm1Dsim-A simulation toolkit for 1D ultrafast dynamics in condensed matter}, series = {Computer physics communications : an international journal devoted to computational physics and computer programs in physics}, volume = {185}, journal = {Computer physics communications : an international journal devoted to computational physics and computer programs in physics}, number = {2}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0010-4655}, doi = {10.1016/j.cpc.2013.10.009}, pages = {651 -- 660}, year = {2014}, abstract = {The UDKM1DSIM toolbox is a collection of MATLAB (MathWorks Inc.) classes and routines to simulate the structural dynamics and the according X-ray diffraction response in one-dimensional crystalline sample structures upon an arbitrary time-dependent external stimulus, e.g. an ultrashort laser pulse. The toolbox provides the capabilities to define arbitrary layered structures on the atomic level including a rich database of corresponding element-specific physical properties. The excitation of ultrafast dynamics is represented by an N-temperature model which is commonly applied for ultrafast optical excitations. Structural dynamics due to thermal stress are calculated by a linear-chain model of masses and springs. The resulting X-ray diffraction response is computed by dynamical X-ray theory. The UDKM1DSIM toolbox is highly modular and allows for introducing user-defined results at any step in the simulation procedure. Program summary Program title: udkm1Dsim Catalogue identifier: AERH_v1_0 Program summary URL: http://cpc.cs.qub.ac.uk/summaries/AERH_v1_0.html Licensing provisions: BSD No. of lines in distributed program, including test data, etc.: 130221 No. of bytes in distributed program, including test data, etc.: 2746036 Distribution format: tar.gz Programming language: Matlab (MathWorks Inc.). Computer: PC/Workstation. Operating system: Running Matlab installation required (tested on MS Win XP -7, Ubuntu Linux 11.04-13.04). Has the code been vectorized or parallelized?: Parallelization for dynamical XRD computations. Number of processors used: 1-12 for Matlab Parallel Computing Toolbox; 1 - infinity for Matlab Distributed Computing Toolbox External routines: Optional: Matlab Parallel Computing Toolbox, Matlab Distributed Computing Toolbox Required (included in the package): mtimesx Fast Matrix Multiply for Matlab by James Tursa, xml io tools by Jaroslaw Tuszynski, textprogressbar by Paul Proteus Nature of problem: Simulate the lattice dynamics of 1D crystalline sample structures due to an ultrafast excitation including thermal transport and compute the corresponding transient X-ray diffraction pattern. Solution method: Restrictions: The program is restricted to 1D sample structures and is further limited to longitudinal acoustic phonon modes and symmetrical X-ray diffraction geometries. Unusual features: The program is highly modular and allows the inclusion of user-defined inputs at any time of the simulation procedure. Running time: The running time is highly dependent on the number of unit cells in the sample structure and other simulation parameters such as time span or angular grid for X-ray diffraction computations. However, the example files are computed in approx. 1-5 min each on a 8 Core Processor with 16 GB RAM available.}, language = {en} } @article{SchefflerSchnor2004, author = {Scheffler, Thomas and Schnor, Bettina}, title = {Securing Next generation Mobile Networks}, isbn = {0-86341-388-9}, year = {2004}, language = {en} } @article{SchefflerSchnor2005, author = {Scheffler, Thomas and Schnor, Bettina}, title = {Privacy Requirements for Embedded Sensor Devices}, isbn = {978-3-800729-09-8}, year = {2005}, abstract = {This paper analyses data privacy issues as they arise from different deployment scenarios for networks that use embedded sensor devices. Maintaining data privacy in pervasive environments requires the management and implementation of privacy protection measures close to the data source. We propose a set of atomic privacy parameters that is generic enough to form specific privacy classes and might be applied directly at the embedded sensor device.}, language = {en} }