@article{PrasseKnaebelMachlicaetal.2019, author = {Prasse, Paul and Knaebel, Rene and Machlica, Lukas and Pevny, Tomas and Scheffer, Tobias}, title = {Joint detection of malicious domains and infected clients}, series = {Machine learning}, volume = {108}, journal = {Machine learning}, number = {8-9}, publisher = {Springer}, address = {Dordrecht}, issn = {0885-6125}, doi = {10.1007/s10994-019-05789-z}, pages = {1353 -- 1368}, year = {2019}, abstract = {Detection of malware-infected computers and detection of malicious web domains based on their encrypted HTTPS traffic are challenging problems, because only addresses, timestamps, and data volumes are observable. The detection problems are coupled, because infected clients tend to interact with malicious domains. Traffic data can be collected at a large scale, and antivirus tools can be used to identify infected clients in retrospect. Domains, by contrast, have to be labeled individually after forensic analysis. We explore transfer learning based on sluice networks; this allows the detection models to bootstrap each other. In a large-scale experimental study, we find that the model outperforms known reference models and detects previously unknown malware, previously unknown malware families, and previously unknown malicious domains.}, language = {en} } @phdthesis{Ashouri2020, author = {Ashouri, Mohammadreza}, title = {TrainTrap}, school = {Universit{\"a}t Potsdam}, pages = {XIX, 103}, year = {2020}, language = {en} } @article{LaskovGehlKruegeretal.2006, author = {Laskov, Pavel and Gehl, Christian and Kr{\"u}ger, Stefan and M{\"u}ller, Klaus-Robert}, title = {Incremental support vector learning: analysis, implementation and applications}, series = {Journal of machine learning research}, volume = {7}, journal = {Journal of machine learning research}, publisher = {MIT Press}, address = {Cambridge, Mass.}, issn = {1532-4435}, pages = {1909 -- 1936}, year = {2006}, abstract = {Incremental Support Vector Machines (SVM) are instrumental in practical applications of online learning. This work focuses on the design and analysis of efficient incremental SVM learning, with the aim of providing a fast, numerically stable and robust implementation. A detailed analysis of convergence and of algorithmic complexity of incremental SVM learning is carried out. Based on this analysis, a new design of storage and numerical operations is proposed, which speeds up the training of an incremental SVM by a factor of 5 to 20. The performance of the new algorithm is demonstrated in two scenarios: learning with limited resources and active learning. Various applications of the algorithm, such as in drug discovery, online monitoring of industrial devices and and surveillance of network traffic, can be foreseen.}, language = {en} } @article{SteuerHumburgSelbig2006, author = {Steuer, Ralf and Humburg, Peter and Selbig, Joachim}, title = {Validation and functional annotation of expression-based clusters based on gene ontology}, series = {BMC bioinformatics}, volume = {7}, journal = {BMC bioinformatics}, number = {380}, publisher = {BioMed Central}, address = {London}, issn = {1471-2105}, doi = {10.1186/1471-2105-7-380}, pages = {12}, year = {2006}, abstract = {Background: The biological interpretation of large-scale gene expression data is one of the paramount challenges in current bioinformatics. In particular, placing the results in the context of other available functional genomics data, such as existing bio-ontologies, has already provided substantial improvement for detecting and categorizing genes of interest. One common approach is to look for functional annotations that are significantly enriched within a group or cluster of genes, as compared to a reference group. Results: In this work, we suggest the information-theoretic concept of mutual information to investigate the relationship between groups of genes, as given by data-driven clustering, and their respective functional categories. Drawing upon related approaches (Gibbons and Roth, Genome Research 12: 1574-1581, 2002), we seek to quantify to what extent individual attributes are sufficient to characterize a given group or cluster of genes. Conclusion: We show that the mutual information provides a systematic framework to assess the relationship between groups or clusters of genes and their functional annotations in a quantitative way. Within this framework, the mutual information allows us to address and incorporate several important issues, such as the interdependence of functional annotations and combinatorial combinations of attributes. It thus supplements and extends the conventional search for overrepresented attributes within a group or cluster of genes. In particular taking combinations of attributes into account, the mutual information opens the way to uncover specific functional descriptions of a group of genes or clustering result. All datasets and functional annotations used in this study are publicly available. All scripts used in the analysis are provided as additional files.}, language = {en} } @incollection{KiyHaferSchumannetal.2016, author = {Kiy, Alexander and Hafer, J{\"o}rg and Schumann, Marlen and Enke, Uta}, title = {Digitale Teilnehmerzertifikate und Open Badges verbinden}, series = {DeLFI 2016 - Die 14. E-Learning Fachtagung Informatik 11.-14. September 2016 Potsdam}, booktitle = {DeLFI 2016 - Die 14. E-Learning Fachtagung Informatik 11.-14. September 2016 Potsdam}, number = {P-262}, editor = {Lucke, Ulrike and Schwill, Andreas and Zender, Raphael}, publisher = {Gesellschaft f{\"u}r Informatik}, address = {Bonn}, isbn = {978-3-88579-656-5}, publisher = {Universit{\"a}t Potsdam}, pages = {285 -- 287}, year = {2016}, abstract = {W{\"a}hrend Qualifikationen und Kompetenzen, die auf informellem Wege erworben werden, immer mehr Beachtung finden, stellt sowohl deren Darstellung als auch die Anerkennung ein meist un{\"u}berwindbares Hindernis f{\"u}r Ausstellende und Erwerbende dar. Vermehrt wird unterdessen von klassisch papiergebundenen auf digitale Teilnahmezertifikate umgestellt, um den Nachweis von Kompetenz- und Qualifikationserwerb zu vereinfachen. In diesem Zusammenhang kann die Verbindung von digitalen Teilnahmezertifikaten und Open Badges einen Mehrwert f{\"u}r die {\"o}ffentliche Darstellung und Verifikation bieten.}, language = {de} } @article{LinkeTompitsWoltran2004, author = {Linke, Thomas and Tompits, Hans and Woltran, Stefan}, title = {On Acyclic and head-cycle free nested logic programs}, isbn = {3-540-22671-01}, year = {2004}, language = {en} } @article{LinkeTompitsWoltran2004, author = {Linke, Thomas and Tompits, Hans and Woltran, Stefan}, title = {On acyclic and head-cycle free nested logic programs}, year = {2004}, language = {en} } @incollection{HaferKostaedtLucke2021, author = {Hafer, J{\"o}rg and Kost{\"a}dt, Peter and Lucke, Ulrike}, title = {Das Corona-Virus als Treiber der Digitalisierung}, series = {Das Corona-Virus als Treiber der Digitalisierung}, booktitle = {Das Corona-Virus als Treiber der Digitalisierung}, publisher = {Springer}, address = {Wiesbaden}, isbn = {978-3-658-32608-1}, doi = {10.1007/978-3-658-32609-8_15}, pages = {219 -- 242}, year = {2021}, abstract = {Mit der Covid-19-Pandemie hat die Digitalisierung an Hochschulen weitere Bedeutung erlangt. Insbesondere dem Einsatz digitaler Medien in Lehre und Studium galt großes Augenmerk. Das legt die Hoffnung nahe, dass die Digitalisierung durch das Virus einen Schub erfahren und die Hochschulen dauerhaft ver{\"a}ndert hat. Der Beitrag geht am Beispiel der Universit{\"a}t Potsdam der Frage nach, welcher Natur diese Ver{\"a}nderungen waren - ausgehend sowohl von den unternommenen Maßnahmen als auch von den erzielten Resultaten - und inwiefern sie von Dauer sind. Dabei werden f{\"o}rderliche und hemmende Faktoren identifiziert, die in Empfehlungen f{\"u}r weitere Digitalisierungsvorhaben {\"u}bersetzt werden.}, language = {de} } @article{BordihnFernauHolzeretal.2006, author = {Bordihn, Henning and Fernau, Henning and Holzer, Markus and Manca, Vincenzo and Martin-Vide, Carlos}, title = {Iterated sequential transducers as language generating devices}, series = {Theoretical computer science}, volume = {369}, journal = {Theoretical computer science}, number = {1}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0304-3975}, doi = {10.1016/j.tcs.2006.07.059}, pages = {67 -- 81}, year = {2006}, abstract = {Iterated finite state sequential transducers are considered as language generating devices. The hierarchy induced by the size of the state alphabet is proved to collapse to the fourth level. The corresponding language families are related to the families of languages generated by Lindenmayer systems and Chomsky grammars. Finally, some results on deterministic and extended iterated finite state transducers are established.}, language = {en} } @article{StoffelKunzGerber1997, author = {Stoffel, Dominik and Kunz, Wolfgang and Gerber, Stefan}, title = {And/Or reasoning graphs for determining prime implicants in multi-level combinational networks}, year = {1997}, language = {en} } @phdthesis{Gerber1995, author = {Gerber, Stefan}, title = {Using software for fault detection in arithmetical circuits}, pages = {123 S.}, year = {1995}, language = {en} } @article{BaierDiCiccioMendlingetal.2018, author = {Baier, Thomas and Di Ciccio, Claudio and Mendling, Jan and Weske, Mathias}, title = {Matching events and activities by integrating behavioral aspects and label analysis}, series = {Software and systems modeling}, volume = {17}, journal = {Software and systems modeling}, number = {2}, publisher = {Springer}, address = {Heidelberg}, issn = {1619-1366}, doi = {10.1007/s10270-017-0603-z}, pages = {573 -- 598}, year = {2018}, abstract = {Nowadays, business processes are increasingly supported by IT services that produce massive amounts of event data during the execution of a process. These event data can be used to analyze the process using process mining techniques to discover the real process, measure conformance to a given process model, or to enhance existing models with performance information. Mapping the produced events to activities of a given process model is essential for conformance checking, annotation and understanding of process mining results. In order to accomplish this mapping with low manual effort, we developed a semi-automatic approach that maps events to activities using insights from behavioral analysis and label analysis. The approach extracts Declare constraints from both the log and the model to build matching constraints to efficiently reduce the number of possible mappings. These mappings are further reduced using techniques from natural language processing, which allow for a matching based on labels and external knowledge sources. The evaluation with synthetic and real-life data demonstrates the effectiveness of the approach and its robustness toward non-conforming execution logs.}, language = {en} } @article{PrzybyllaRomeike2018, author = {Przybylla, Mareen and Romeike, Ralf}, title = {Empowering learners with tools in CS education}, series = {it - Information Technology}, volume = {60}, journal = {it - Information Technology}, number = {2}, publisher = {De Gruyter}, address = {Berlin}, issn = {1611-2776}, doi = {10.1515/itit-2017-0032}, pages = {91 -- 101}, year = {2018}, abstract = {In computer science, computer systems are both, objects of investigation and tools that enable creative learning and design. Tools for learning have a long tradition in computer science education. Already in the late 1960s, Papert developed a concept which had an immense impact on the development of informal education in the following years: his theory of constructionism understands learning as a creative process of knowledge construction that is most effective when learners create something purposeful that they can try out, show around, discuss, analyse and receive praise for. By now, there are numerous learning and programming environments that are based on the constructionist ideas. Modern tools offer opportunities for students to learn in motivating ways and gain impressive results in programming games, animations, implementing 3D models or developing interactive objects. This article gives an overview of computer science education research related to tools and media to be used in educational settings. We analyse different types of tools with a special focus on the categorization and development of tools for student adequate physical computing activities in the classroom. Research around the development and evaluation of tools and learning resources in the domain of physical computing is illustrated with the example of "My Interactive Garden", a constructionist learning and programming environment. It is explained how the results from empirical studies are integrated in the continuous development of the learning material.}, language = {en} } @misc{FrankKreitz2018, author = {Frank, Mario and Kreitz, Christoph}, title = {A theorem prover for scientific and educational purposes}, series = {Electronic proceedings in theoretical computer science}, journal = {Electronic proceedings in theoretical computer science}, number = {267}, publisher = {Open Publishing Association}, address = {Sydney}, issn = {2075-2180}, doi = {10.4204/EPTCS.267.4}, pages = {59 -- 69}, year = {2018}, abstract = {We present a prototype of an integrated reasoning environment for educational purposes. The presented tool is a fragment of a proof assistant and automated theorem prover. We describe the existing and planned functionality of the theorem prover and especially the functionality of the educational fragment. This currently supports working with terms of the untyped lambda calculus and addresses both undergraduate students and researchers. We show how the tool can be used to support the students' understanding of functional programming and discuss general problems related to the process of building theorem proving software that aims at supporting both research and education.}, language = {en} } @article{MoeringLeino2022, author = {M{\"o}ring, Sebastian and Leino, Olli Tapio}, title = {Die neoliberale Bedingung von Computerspielen}, series = {Kontrollmaschinen - zur Dispositivtheorie des Computerspiels}, journal = {Kontrollmaschinen - zur Dispositivtheorie des Computerspiels}, publisher = {LiteraturWissenschaft.de}, address = {M{\"u}nster}, isbn = {978-3-643-14780-6}, pages = {41 -- 61}, year = {2022}, language = {de} } @inproceedings{KnothKiy2014, author = {Knoth, Alexander Henning and Kiy, Alexander}, title = {(Self-)confident through the introductory study phase with the Reflect App}, series = {CEUR Workshop Proceedings}, booktitle = {CEUR Workshop Proceedings}, number = {1227}, publisher = {CEUR-WS}, address = {Freiburg}, issn = {1613-0073}, pages = {172 -- 179}, year = {2014}, language = {en} } @article{LyTarkhanov2009, author = {Ly, Ibrahim and Tarkhanov, Nikolai Nikolaevich}, title = {A variational approach to the Cauchy problem for nonlinear elliptic differential equations}, issn = {0928-0219}, doi = {10.1515/Jiip.2009.037}, year = {2009}, abstract = {We discuss the relaxation of a class of nonlinear elliptic Cauchy problems with data on a piece S of the boundary surface by means of a variational approach known in the optimal control literature as "equation error method". By the Cauchy problem is meant any boundary value problem for an unknown function y in a domain X with the property that the data on S, if combined with the differential equations in X, allow one to determine all derivatives of y on S by means of functional equations. In the case of real analytic data of the Cauchy problem, the existence of a local solution near S is guaranteed by the Cauchy-Kovalevskaya theorem. We also admit overdetermined elliptic systems, in which case the set of those Cauchy data on S for which the Cauchy problem is solvable is very "thin". For this reason we discuss a variational setting of the Cauchy problem which always possesses a generalised solution.}, language = {en} } @incollection{KnothKiyKlein2015, author = {Knoth, Alexander Henning and Kiy, Alexander and Klein, M.}, title = {Mobil in und aus Situationen lernen: Erste Erfahrungen zum Studieneinstieg von Studierenden verschiedener Fachrichtungen}, series = {Lecture Notes in Informatics (LNI), Proceedings - Series of the Gesellschaft f{\"u}r Informatik}, booktitle = {Lecture Notes in Informatics (LNI), Proceedings - Series of the Gesellschaft f{\"u}r Informatik}, number = {247}, publisher = {Gesellschaft fur Informatik e.V.}, address = {Bonn}, isbn = {978-3-88579-641-1}, issn = {1617-5468}, publisher = {Universit{\"a}t Potsdam}, pages = {81 -- 93}, year = {2015}, language = {de} } @incollection{KnothKiyMueller2016, author = {Knoth, Alexander Henning and Kiy, Alexander and M{\"u}ller, Ina}, title = {Das erste Semester von Studierenden der Wirtschafts- und Sozialwissenschaften im Spiegel der Reflect-App}, series = {DeLFI 2016 - Die 14. E-Learning Fachtagung Informatik 11.-14. September 2016 Potsdam}, booktitle = {DeLFI 2016 - Die 14. E-Learning Fachtagung Informatik 11.-14. September 2016 Potsdam}, number = {P-262}, publisher = {Gesellschaft f{\"u}r Informatik e.V.}, address = {Bonn}, isbn = {978-3-88579-656-5}, publisher = {Universit{\"a}t Potsdam}, pages = {59 -- 70}, year = {2016}, abstract = {Mobile Applikationen eignen sich als strukturelle Unterst{\"u}tzungsangebote f{\"u}r Studierende w{\"a}hrend des Studieneinstiegs. Durch die App Reflect.UP werden Studienorganisation, Studieninhalte und -ziele von Studierenden reflektiert. Der bewusste Umgang mit dem studentischen Kompetenzerwerb als wissenschaftliche eflexionskompetenz ist immanenter Bestandteil der akademischen Professionalisierung und steht in diesem Beitrag im Vordergrund. Gezeigt wird, wie aus Studienordnungen und Modulbeschreibungen systematisch Fragen zur studentischen Reflexion herausgearbeitet werden und dadurch ein Kompetenzraster entsteht. Die durch den praktischen Einsatz von Reflect.UP gewonnenen Daten werden ausgewertet und dahingehend diskutiert, welche R{\"u}ckschl{\"u}sse sich hieraus auf die Problemlagen und Lernprozesse der Studierenden sowie f{\"u}r die Studiengangsorganisation(en) ziehen lassen. Dar{\"u}ber hinaus werden die St{\"a}rken und Schw{\"a}chen einer mobilen Applikation als sozial- und informationswissenschaftliches Amalgam zur strukturellen Unterst{\"u}tzung der Studieneingangsphase reflektiert.}, language = {de} } @incollection{KiyKnothMueller2018, author = {Kiy, Alexander and Knoth, Alexander Henning and M{\"u}ller, Ina}, title = {ReflectUP-App Situative und kontextbezogene Evaluation des Studieneinstiegs}, series = {Digitalisierung der Hochschullehre Neue Anforderungen an die Evaluation?}, booktitle = {Digitalisierung der Hochschullehre Neue Anforderungen an die Evaluation?}, editor = {Harris-Huemmert, Susan and Pohlenz, Philipp and Mitterauer, Lukas}, publisher = {Waxmann}, address = {M{\"u}nster}, isbn = {978-3-8309-3807-1}, publisher = {Universit{\"a}t Potsdam}, pages = {85 -- 102}, year = {2018}, language = {de} } @article{PrasseIversenLienhardetal.2022, author = {Prasse, Paul and Iversen, Pascal and Lienhard, Matthias and Thedinga, Kristina and Herwig, Ralf and Scheffer, Tobias}, title = {Pre-Training on In Vitro and Fine-Tuning on Patient-Derived Data Improves Deep Neural Networks for Anti-Cancer Drug-Sensitivity Prediction}, series = {MDPI}, volume = {14}, journal = {MDPI}, edition = {16}, publisher = {MDPI}, address = {Basel, Schweiz}, issn = {2072-6694}, doi = {10.3390/cancers14163950}, pages = {1 -- 14}, year = {2022}, abstract = {Large-scale databases that report the inhibitory capacities of many combinations of candidate drug compounds and cultivated cancer cell lines have driven the development of preclinical drug-sensitivity models based on machine learning. However, cultivated cell lines have devolved from human cancer cells over years or even decades under selective pressure in culture conditions. Moreover, models that have been trained on in vitro data cannot account for interactions with other types of cells. Drug-response data that are based on patient-derived cell cultures, xenografts, and organoids, on the other hand, are not available in the quantities that are needed to train high-capacity machine-learning models. We found that pre-training deep neural network models of drug sensitivity on in vitro drug-sensitivity databases before fine-tuning the model parameters on patient-derived data improves the models' accuracy and improves the biological plausibility of the features, compared to training only on patient-derived data. From our experiments, we can conclude that pre-trained models outperform models that have been trained on the target domains in the vast majority of cases.}, language = {en} } @article{EverardoPerezOsorio2020, author = {Everardo P{\´e}rez, Flavio Omar and Osorio, Mauricio}, title = {Towards an answer set programming methodology for constructing programs following a semi-automatic approach}, series = {Electronic notes in theoretical computer science}, volume = {354}, journal = {Electronic notes in theoretical computer science}, publisher = {Elsevier}, address = {Amsterdam [u.a.]}, issn = {1571-0661}, doi = {10.1016/j.entcs.2020.10.004}, pages = {29 -- 44}, year = {2020}, abstract = {Answer Set Programming (ASP) is a successful rule-based formalism for modeling and solving knowledge-intense combinatorial (optimization) problems. Despite its success in both academic and industry, open challenges like automatic source code optimization, and software engineering remains. This is because a problem encoded into an ASP might not have the desired solving performance compared to an equivalent representation. Motivated by these two challenges, this paper has three main contributions. First, we propose a developing process towards a methodology to implement ASP programs, being faithful to existing methods. Second, we present ASP encodings that serve as the basis from the developing process. Third, we demonstrate the use of ASP to reverse the standard solving process. That is, knowing answer sets in advance, and desired strong equivalent properties, "we" exhaustively reconstruct ASP programs if they exist. This paper was originally motivated by the search of propositional formulas (if they exist) that represent the semantics of a new aggregate operator. Particularly, a parity aggregate. This aggregate comes as an improvement from the already existing parity (xor) constraints from xorro, where lacks expressiveness, even though these constraints fit perfectly for reasoning modes like sampling or model counting. To this end, this extended version covers the fundaments from parity constraints as well as the xorro system. Hence, we delve a little more in the examples and the proposed methodology over parity constraints. Finally, we discuss our results by showing the only representation available, that satisfies different properties from the classical logic xor operator, which is also consistent with the semantics of parity constraints from xorro.}, language = {en} } @phdthesis{Koehlmann2016, author = {K{\"o}hlmann, Wiebke}, title = {Zug{\"a}nglichkeit virtueller Klassenzimmer f{\"u}r Blinde}, publisher = {Logos}, address = {Berlin}, isbn = {978-3-8325-4273-3}, pages = {i-x, 310, i-clxxvi}, year = {2016}, abstract = {E-Learning-Anwendungen bieten Chancen f{\"u}r die gesetzlich vorgeschriebene Inklusion von Lernenden mit Beeintr{\"a}chtigungen. Die gleichberechtigte Teilhabe von blinden Lernenden an Veranstaltungen in virtuellen Klassenzimmern ist jedoch durch den synchronen, multimedialen Charakter und den hohen Informationsumfang dieser L{\"o}sungen kaum m{\"o}glich. Die vorliegende Arbeit untersucht die Zug{\"a}nglichkeit virtueller Klassenzimmer f{\"u}r blinde Nutzende, um eine m{\"o}glichst gleichberechtigte Teilhabe an synchronen, kollaborativen Lernszenarien zu erm{\"o}glichen. Im Rahmen einer Produktanalyse werden dazu virtuelle Klassenzimmer auf ihre Zug{\"a}nglichkeit und bestehende Barrieren untersucht und Richtlinien f{\"u}r die zug{\"a}ngliche Gestaltung von virtuellen Klassenzimmern definiert. Anschließend wird ein alternatives Benutzungskonzept zur Darstellung und Bedienung virtueller Klassenzimmer auf einem zweidimensionalen taktilen Braille-Display entwickelt, um eine m{\"o}glichst gleichberechtigte Teilhabe blinder Lernender an synchronen Lehrveranstaltungen zu erm{\"o}glichen. Nach einer ersten Evaluation mit blinden Probanden erfolgt die prototypische Umsetzung des Benutzungskonzepts f{\"u}r ein Open-Source-Klassenzimmer. Die abschließende Evaluation der prototypischen Umsetzung zeigt die Verbesserung der Zug{\"a}nglichkeit von virtuellen Klassenzimmern f{\"u}r blinde Lernende unter Verwendung eines taktilen Fl{\"a}chendisplays und best{\"a}tigt die Wirksamkeit der im Rahmen dieser Arbeit entwickelten Konzepte.}, language = {de} } @phdthesis{AlSaffar2016, author = {Al-Saffar, Loay Talib Ahmed}, title = {Analysing prerequisites, expectations, apprehensions, and attitudes of University students studying computer science}, school = {Universit{\"a}t Potsdam}, pages = {128}, year = {2016}, language = {en} } @book{OPUS4-7534, title = {Process design for natural scientists}, series = {Communications in computer and information science ; 500}, journal = {Communications in computer and information science ; 500}, editor = {Lambrecht, Anna-Lena and Margaria, Tizian}, publisher = {Springer}, address = {Wiesbaden}, isbn = {978-3-662-45005-5}, pages = {X, 251}, year = {2014}, abstract = {This book presents an agile and model-driven approach to manage scientific workflows. The approach is based on the Extreme Model Driven Design (XMDD) paradigm and aims at simplifying and automating the complex data analysis processes carried out by scientists in their day-to-day work. Besides documenting the impact the workflow modeling might have on the work of natural scientists, this book serves three major purposes: 1. It acts as a primer for practitioners who are interested to learn how to think in terms of services and workflows when facing domain-specific scientific processes. 2. It provides interesting material for readers already familiar with this kind of tools, because it introduces systematically both the technologies used in each case study and the basic concepts behind them. 3. As the addressed thematic field becomes increasingly relevant for lectures in both computer science and experimental sciences, it also provides helpful material for teachers that plan similar courses.}, language = {en} } @phdthesis{Wust2015, author = {Wust, Johannes}, title = {Mixed workload managment for in-memory databases}, pages = {VIII, 167}, year = {2015}, language = {en} } @article{Teske2014, author = {Teske, Daniel}, title = {Geocoder accuracy ranking}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {161 -- 174}, year = {2014}, abstract = {Finding an address on a map is sometimes tricky: the chosen map application may be unfamiliar with the enclosed region. There are several geocoders on the market, they have different databases and algorithms to compute the query. Consequently, the geocoding results differ in their quality. Fortunately the geocoders provide a rich set of metadata. The workflow described in this paper compares this metadata with the aim to find out which geocoder is offering the best-fitting coordinate for a given address.}, language = {en} } @article{Sens2014, author = {Sens, Henriette}, title = {Web-Based map generalization tools put to the test: a jABC workflow}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {175 -- 185}, year = {2014}, abstract = {Geometric generalization is a fundamental concept in the digital mapping process. An increasing amount of spatial data is provided on the web as well as a range of tools to process it. This jABC workflow is used for the automatic testing of web-based generalization services like mapshaper.org by executing its functionality, overlaying both datasets before and after the transformation and displaying them visually in a .tif file. Mostly Web Services and command line tools are used to build an environment where ESRI shapefiles can be uploaded, processed through a chosen generalization service and finally visualized in Irfanview.}, language = {en} } @article{Noack2014, author = {Noack, Franziska}, title = {CREADED: Colored-Relief application for digital elevation data}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {186 -- 199}, year = {2014}, abstract = {In the geoinformatics field, remote sensing data is often used for analyzing the characteristics of the current investigation area. This includes DEMs, which are simple raster grids containing grey scales representing the respective elevation values. The project CREADED that is presented in this paper aims at making these monochrome raster images more significant and more intuitively interpretable. For this purpose, an executable interactive model for creating a colored and relief-shaded Digital Elevation Model (DEM) has been designed using the jABC framework. The process is based on standard jABC-SIBs and SIBs that provide specific GIS functions, which are available as Web services, command line tools and scripts.}, language = {en} } @article{Respondek2014, author = {Respondek, Tobias}, title = {A workflow for computing potential areas for wind turbines}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, pages = {200 -- 215}, year = {2014}, abstract = {This paper describes the implementation of a workflow model for service-oriented computing of potential areas for wind turbines in jABC. By implementing a re-executable model the manual effort of a multi-criteria site analysis can be reduced. The aim is to determine the shift of typical geoprocessing tools of geographic information systems (GIS) from the desktop to the web. The analysis is based on a vector data set and mainly uses web services of the "Center for Spatial Information Science and Systems" (CSISS). This paper discusses effort, benefits and problems associated with the use of the web services.}, language = {en} } @article{Scheele2014, author = {Scheele, Lasse}, title = {Location analysis for placing artificial reefs}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {216 -- 228}, year = {2014}, abstract = {Location analyses are among the most common tasks while working with spatial data and geographic information systems. Automating the most frequently used procedures is therefore an important aspect of improving their usability. In this context, this project aims to design and implement a workflow, providing some basic tools for a location analysis. For the implementation with jABC, the workflow was applied to the problem of finding a suitable location for placing an artificial reef. For this analysis three parameters (bathymetry, slope and grain size of the ground material) were taken into account, processed, and visualized with the The Generic Mapping Tools (GMT), which were integrated into the workflow as jETI-SIBs. The implemented workflow thereby showed that the approach to combine jABC with GMT resulted in an user-centric yet user-friendly tool with high-quality cartographic outputs.}, language = {en} } @article{Holler2014, author = {Holler, Robin}, title = {GraffDok - a graffiti documentation application}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {239 -- 251}, year = {2014}, abstract = {GraffDok is an application helping to maintain an overview over sprayed images somewhere in a city. At the time of writing it aims at vandalism rather than at beautiful photographic graffiti in an underpass. Looking at hundreds of tags and scribbles on monuments, house walls, etc. it would be interesting to not only record them in writing but even make them accessible electronically, including images. GraffDok's workflow is simple and only requires an EXIF-GPS-tagged photograph of a graffito. It automatically determines its location by using reverse geocoding with the given GPS-coordinates and the Gisgraphy WebService. While asking the user for some more meta data, GraffDok analyses the image in parallel with this and tries to detect fore- and background - before extracting the drawing lines and make them stand alone. The command line based tool ImageMagick is used here as well as for accessing EXIF data. Any meta data is written to csv-files, which will stay easily accessible and can be integrated in TeX-files as well. The latter ones are converted to PDF at the end of the workflow, containing a table about all graffiti and a summary for each - including the generated characteristic graffiti pattern image.}, language = {en} } @article{Reso2014, author = {Reso, Judith}, title = {Protein Classification Workflow}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, editor = {Lambrecht, Anna-Lena and Margaria, Tiziana}, publisher = {Springer Verlag}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {65 -- 72}, year = {2014}, abstract = {The protein classification workflow described in this report enables users to get information about a novel protein sequence automatically. The information is derived by different bioinformatic analysis tools which calculate or predict features of a protein sequence. Also, databases are used to compare the novel sequence with known proteins.}, language = {en} } @article{Schulze2014, author = {Schulze, Gunnar}, title = {Workflow for rapid metagenome analysis}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {88 -- 100}, year = {2014}, abstract = {Analyses of metagenomes in life sciences present new opportunities as well as challenges to the scientific community and call for advanced computational methods and workflows. The large amount of data collected from samples via next-generation sequencing (NGS) technologies render manual approaches to sequence comparison and annotation unsuitable. Rather, fast and efficient computational pipelines are needed to provide comprehensive statistics and summaries and enable the researcher to choose appropriate tools for more specific analyses. The workflow presented here builds upon previous pipelines designed for automated clustering and annotation of raw sequence reads obtained from next-generation sequencing technologies such as 454 and Illumina. Employing specialized algorithms, the sequence reads are processed at three different levels. First, raw reads are clustered at high similarity cutoff to yield clusters which can be exported as multifasta files for further analyses. Independently, open reading frames (ORFs) are predicted from raw reads and clustered at two strictness levels to yield sets of non-redundant sequences and ORF families. Furthermore, single ORFs are annotated by performing searches against the Pfam database}, language = {en} } @article{Vierheller2014, author = {Vierheller, Janine}, title = {Exploratory Data Analysis}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, editor = {Lambrecht, Anna-Lena and Margaria, Tiziana}, publisher = {Axel Springer Verlag}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {110 -- 126}, year = {2014}, abstract = {In bioinformatics the term exploratory data analysis refers to different methods to get an overview of large biological data sets. Hence, it helps to create a framework for further analysis and hypothesis testing. The workflow facilitates this first important step of the data analysis created by high-throughput technologies. The results are different plots showing the structure of the measurements. The goal of the workflow is the automatization of the exploratory data analysis, but also the flexibility should be guaranteed. The basic tool is the free software R.}, language = {en} } @article{Schuett2014, author = {Sch{\"u}tt, Christine}, title = {Identification of differentially expressed genes}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {127 -- 139}, year = {2014}, abstract = {With the jABC it is possible to realize workflows for numerous questions in different fields. The goal of this project was to create a workflow for the identification of differentially expressed genes. This is of special interest in biology, for it gives the opportunity to get a better insight in cellular changes due to exogenous stress, diseases and so on. With the knowledge that can be derived from the differentially expressed genes in diseased tissues, it becomes possible to find new targets for treatment.}, language = {en} } @article{Kuntzsch2014, author = {Kuntzsch, Christian}, title = {Visualization of data transfer paths}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {140 -- 148}, year = {2014}, abstract = {A workflow for visualizing server connections using the Google Maps API was built in the jABC. It makes use of three basic services: An XML-based IP address geolocation web service, a command line tool and the Static Maps API. The result of the workflow is an URL leading to an image file of a map, showing server connections between a client and a target host.}, language = {en} } @article{Hibbe2014, author = {Hibbe, Marcel}, title = {Spotlocator - Guess Where the Photo Was Taken!}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, editor = {Lambrecht, Anna-Lena and Margaria, Tiziana}, publisher = {Springer Verlag}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {149 -- 160}, year = {2014}, abstract = {Spotlocator is a game wherein people have to guess the spots of where photos were taken. The photos of a defined area for each game are from panoramio.com. They are published at http://spotlocator. drupalgardens.com with an ID. Everyone can guess the photo spots by sending a special tweet via Twitter that contains the hashtag \#spotlocator, the guessed coordinates and the ID of the photo. An evaluation is published for all tweets. The players are informed about the distance to the real photo spots and the positions are shown on a map.}, language = {en} } @article{Blaese2014, author = {Blaese, Leif}, title = {Data mining for unidentified protein squences}, series = {Process design for natural scientists: an agile model-driven approach}, journal = {Process design for natural scientists: an agile model-driven approach}, number = {500}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {73 -- 87}, year = {2014}, abstract = {Through the use of next generation sequencing (NGS) technology, a lot of newly sequenced organisms are now available. Annotating those genes is one of the most challenging tasks in sequence biology. Here, we present an automated workflow to find homologue proteins, annotate sequences according to function and create a three-dimensional model.}, language = {en} } @article{Lis2014, author = {Lis, Monika}, title = {Constructing a Phylogenetic Tree}, series = {Process Design for Natural Scientists: an agile model-driven approach}, journal = {Process Design for Natural Scientists: an agile model-driven approach}, number = {500}, editor = {Lambrecht, Anna-Lena and Margaria, Tiziana}, publisher = {Springer Verlag}, address = {Berlin}, isbn = {978-3-662-45005-5}, issn = {1865-0929}, pages = {101 -- 109}, year = {2014}, abstract = {In this project I constructed a workflow that takes a DNA sequence as input and provides a phylogenetic tree, consisting of the input sequence and other sequences which were found during a database search. In this phylogenetic tree the sequences are arranged depending on similarities. In bioinformatics, constructing phylogenetic trees is often used to explore the evolutionary relationships of genes or organisms and to understand the mechanisms of evolution itself.}, language = {en} } @phdthesis{Lincke2014, author = {Lincke, Jens}, title = {Evolving Tools in a Collaborative Self-supporting Development Environment}, school = {Universit{\"a}t Potsdam}, pages = {164}, year = {2014}, language = {en} } @phdthesis{Mueller2008, author = {M{\"u}ller, Claudia}, title = {Graphentheoretische Analyse der Evolution von Wiki-basierten Netzwerken f{\"u}r selbstorganisiertes Wissensmanagement}, address = {Potsdam}, pages = {x, 287 S. : graph. Darst.}, year = {2008}, language = {de} } @phdthesis{Gharib2008, author = {Gharib, Mona}, title = {Incremental answer set programming}, address = {Potsdam}, pages = {184 S. : graph. Darst.}, year = {2008}, language = {en} } @book{OPUS4-10652, title = {Proceedings of the 2nd International Workshop on e-learning and Virtual and Remote Laboratories}, series = {Technische Berichte des Hasso-Plattner-Instituts f{\"u}r Softwaresystemtechnik an der Universit{\"a}t Potsda}, volume = {21}, journal = {Technische Berichte des Hasso-Plattner-Instituts f{\"u}r Softwaresystemtechnik an der Universit{\"a}t Potsda}, editor = {Rabe, Bernhard and Rasche, Andreas}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-940793-17-1}, issn = {1613-5652}, pages = {98 S.}, year = {2008}, language = {en} } @book{deCarvalhoJuergensen2008, author = {de Carvalho, Jackson Marques and J{\"u}rgensen, Helmut}, title = {Document authoring environments and authoring mathematics}, series = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, volume = {2008, 1}, journal = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, publisher = {Univ.}, address = {Potsdam}, issn = {0946-7580}, pages = {8 S.}, year = {2008}, language = {en} } @book{GoesselOcheretnySogomonyanetal.2008, author = {Goessel, Michael and Ocheretny, Vitaly and Sogomonyan, Egor S. and Marienfeld, Daniel}, title = {New methods of concurrent checking}, series = {Frontiers in electronic testing}, volume = {42}, journal = {Frontiers in electronic testing}, publisher = {Springer}, address = {Dordrecht; Heidelberg}, isbn = {978-1-402-08419-5}, doi = {10.1007/978-1-4020-8420-1}, pages = {250 S.}, year = {2008}, language = {en} } @book{Tepoyan2008, author = {Tepoyan, Liparit}, title = {The Mixed problem for a degenerate operator equation}, series = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Mathematik, Arbeitsgruppe Partiell}, journal = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Mathematik, Arbeitsgruppe Partiell}, publisher = {Univ.}, address = {Potsdam}, issn = {1437-739X}, pages = {13 S.}, year = {2008}, language = {en} } @book{KnobelsdorfKreitz2013, author = {Knobelsdorf, Maria and Kreitz, Christoph}, title = {Ein konstruktivistischer Lehransatz f{\"u}r die Einf{\"u}hrungsveranstaltung der Theoretische Informatik}, isbn = {978-3-86956-220-9}, year = {2013}, language = {de} } @phdthesis{Rasche2008, author = {Rasche, Andreas}, title = {Ausf{\"u}hrung und Entwicklung Adaptiver Komponentenbasierter Anwendungen}, address = {Potsdam}, isbn = {978-3-86727-698-6}, pages = {195 S., graph. Darst.}, year = {2008}, language = {de} } @phdthesis{Li2008, author = {Li, Nanjun}, title = {Modeling, Simulation and Evaluation of TCP/IP Networks}, address = {Potsdam}, pages = {124 S., ii-xi, : graph. Darst.}, year = {2008}, language = {en} } @phdthesis{Rasche2008, author = {Rasche, Andreas}, title = {Ausf{\"u}hrung und Entwicklung adaptiver komponentenbasierter Anwendungen}, publisher = {Cuvillier}, address = {G{\"o}ttingen}, isbn = {978-3-86727-698-6}, pages = {195 S.: graph. Darst.}, year = {2008}, language = {de} } @phdthesis{Troeger2008, author = {Tr{\"o}ger, Peter}, title = {Dynamische Ressourcenverwaltung f{\"u}r dienstbasierte Software-Systeme}, publisher = {Cuvillier}, address = {G{\"o}ttingen}, isbn = {978-3-86727-622-1}, pages = {v, 174 S.: Ill., garph. Darst.}, year = {2008}, language = {de} } @phdthesis{Li2008, author = {Li, Nanjun}, title = {Modeling, simulation and evaluation of TCP/IP Networks}, pages = {xi, 124 S.: graph. Drst.}, year = {2008}, language = {en} } @phdthesis{Troeger2008, author = {Tr{\"o}ger, Peter}, title = {Dynamische Ressourcenverwaltung f{\"u}r dienstbasierte Software-Systeme}, address = {Potsdam}, pages = {174 S., graph. Darst.}, year = {2008}, language = {de} } @book{BrauerKarp2008, author = {Brauer, Uwe and Karp, Lavi}, title = {Well-posedness of Einstein-Euler Systems in asymptotically flat spacetimes}, series = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Mathematik, Arbeitsgruppe Partiell}, journal = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Mathematik, Arbeitsgruppe Partiell}, publisher = {Univ.}, address = {Potsdam}, issn = {1437-739X}, pages = {83 S.}, year = {2008}, language = {en} } @phdthesis{Kratzke2007, author = {Kratzke, Nane}, title = {Modellbasierte Analyse interorganisationaler Wissensfl{\"u}sse}, publisher = {Gito-Verl.}, address = {Berlin}, isbn = {978-3-936771-92-3}, pages = {223 S. : graph. Darst.}, year = {2007}, language = {de} } @misc{MarquesdeCarvalhoJuergensen2007, author = {Marques de Carvalho, Jackson W. and J{\"u}rgensen, Helmut}, title = {Flexible Structured Mathematics Notation : IADIS, International Conference Interfaces and Human Computer Interaction, Lisabon, 2007}, series = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, volume = {2007, 1}, journal = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, publisher = {Univ.}, address = {Potsdam}, issn = {0946-7580}, pages = {5 S.}, year = {2007}, language = {en} } @misc{StoepelSchubertMargariaSteffen2007, author = {St{\"o}pel, Christoph and Schubert, Wolfgang and Margaria-Steffen, Tiziana}, title = {Plug-ins und Dienste : Ans{\"a}tze zu Bew{\"a}ltigung zeitvarianter Gesch{\"a}ftsprozesse}, series = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, volume = {2007, 2}, journal = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, publisher = {Univ.}, address = {Potsdam}, issn = {0946-7580}, pages = {14 S.}, year = {2007}, language = {de} } @book{MargariaKubczakSteffen2007, author = {Margaria, Tiziana and Kubczak, Christian and Steffen, Bernhard}, title = {Bio-jETI: a Service Integration, Design, and Provisioning Platform for Orchestrated Bioinformatics Processes - ("part of From Components to Processes")}, series = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, volume = {2007, 4}, journal = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, publisher = {Univ.}, address = {Potsdam}, issn = {0946-7580}, pages = {16 S.}, year = {2007}, language = {en} } @book{Weske2007, author = {Weske, Mathias}, title = {Business Process Management : Concepts, Languages, Architectures}, publisher = {Springer-Verlag Berlin Heidelberg}, address = {Berlin, Heidelberg}, isbn = {978-3-540-73521-2}, doi = {10.1007/978-3-540-73522-9}, pages = {368 S.}, year = {2007}, language = {en} } @book{Margaria2007, author = {Margaria, Tiziana}, title = {Proceedings / EuroSPI 2007, European Software Process Improvement, 26.-28.09.2007, University of Potsdam, Germany}, editor = {Messnarz, Richard}, publisher = {ASQF}, address = {Erlangen}, isbn = {978-3-9809145-6-7}, pages = {Getr. Z{\"a}hl.}, year = {2007}, language = {en} } @phdthesis{Puhlmann2007, author = {Puhlmann, Frank}, title = {On the application of a theory for mobile systems to business process management}, address = {Potsdam}, pages = {xiv, 219 S. : graph. Darst.}, year = {2007}, language = {en} } @book{AbrahamssonBaddooMargariaetal.2007, author = {Abrahamsson, Pekka and Baddoo, Nathan and Margaria, Tiziana and Messnarz, Richard}, title = {Software Process Improvement : 14th europea conference, EuroSpi 2007, Potsdam, Germany, September 26-28, 2007 ; Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4764}, journal = {Lecture Notes in Computer Science}, publisher = {Springer}, address = {Berlin}, pages = {223 S.}, year = {2007}, language = {en} } @book{PolyvyanyyKuropka2007, author = {Polyvyanyy, Artem and Kuropka, Dominik}, title = {A Quantitative Evalution of the Enhanced Topic-based Vector Space Model}, series = {Technische Berichte des Hasso-Plattner-Instituts f{\"u}r Softwaresystemtechnik an der Universit{\"a}t Potsda}, volume = {19}, journal = {Technische Berichte des Hasso-Plattner-Instituts f{\"u}r Softwaresystemtechnik an der Universit{\"a}t Potsda}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-939469-95-7}, issn = {1613-5652}, pages = {88 S.}, year = {2007}, language = {en} } @phdthesis{Kuznetsov2007, author = {Kuznetsov, Grigory}, title = {Fehlererkennung in systemmetrischen Block-Chiffren}, address = {Potsdam}, pages = {118 S. : graph. Darst.}, year = {2007}, language = {de} } @phdthesis{Rzeha2007, author = {Rzeha, Jan}, title = {Generation and Storage of Diagnosis Data On-Chip}, address = {Potsdam}, pages = {VII, 94 S. : graph. Darst.}, year = {2007}, language = {en} } @phdthesis{Marienfeld2007, author = {Marienfeld, Daniel}, title = {Effiziente Fehlerkennung f{\"u}r arithmetische Einheiten}, address = {Potsdam}, pages = {VIII, 122 S. : graph. Darst.}, year = {2007}, language = {de} } @book{OPUS4-11818, title = {Accessible Media : Pre-Proceedings of a Workshop Potsdam 8-9 May, 2006}, series = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, volume = {2006, 7}, journal = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, editor = {J{\"u}rgensen, Helmut}, publisher = {Univ.}, address = {Potsdam}, issn = {0946-7580}, year = {2006}, language = {en} } @book{Krahmer2006, author = {Krahmer, Sebastian}, title = {Generating runtime call graphs}, series = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, volume = {2006, 8}, journal = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, publisher = {Univ.}, address = {Potsdam}, issn = {0946-7580}, pages = {16 S.}, year = {2006}, language = {en} } @book{JeskeBrehmerMengeetal.2006, author = {Jeske, Janin and Brehmer, Bastian and Menge, Falko and H{\"u}ttenrauch, Stefan and Adam, Christian and Sch{\"u}ler, Benjamin and Schult, Wolfgang and Rasche, Andreas and Polze, Andreas}, title = {Aspektorientierte Programmierung : {\"U}berblick {\"u}ber Techniken und Werkzeuge}, series = {Technische Berichte des Hasso-Plattner-Instituts f{\"u}r Softwaresystemtechnik an der Universit{\"a}t Potsda}, volume = {14}, journal = {Technische Berichte des Hasso-Plattner-Instituts f{\"u}r Softwaresystemtechnik an der Universit{\"a}t Potsda}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {3-939469-23-8}, issn = {1613-5652}, pages = {88 S.}, year = {2006}, language = {de} } @phdthesis{Leininger2006, author = {Leininger, Andreas}, title = {New diagnosis and test methods with high compaction rates}, publisher = {Mensch \& Buch Verl.}, address = {Berlin}, isbn = {3-86664-066-8}, pages = {IX, 98 S. : Ill., graph. Darst.}, year = {2006}, language = {en} } @article{ShenoyKrauledatBlankertzetal.2006, author = {Shenoy, Pradeep and Krauledat, Matthias and Blankertz, Benjamin and Rao, Rajesh P. N. and M{\"u}ller, Klaus-Robert}, title = {Towards adaptive classification for BCI}, doi = {10.1088/1741-2560/3/1/R02}, year = {2006}, abstract = {Non-stationarities are ubiquitous in EEG signals. They are especially apparent in the use of EEG-based brain- computer interfaces (BCIs): (a) in the differences between the initial calibration measurement and the online operation of a BCI, or (b) caused by changes in the subject's brain processes during an experiment (e.g. due to fatigue, change of task involvement, etc). In this paper, we quantify for the first time such systematic evidence of statistical differences in data recorded during offline and online sessions. Furthermore, we propose novel techniques of investigating and visualizing data distributions, which are particularly useful for the analysis of (non-) stationarities. Our study shows that the brain signals used for control can change substantially from the offline calibration sessions to online control, and also within a single session. In addition to this general characterization of the signals, we propose several adaptive classification schemes and study their performance on data recorded during online experiments. An encouraging result of our study is that surprisingly simple adaptive methods in combination with an offline feature selection scheme can significantly increase BCI performance}, language = {en} } @article{Bobda2009, author = {Bobda, Christophe}, title = {Special issue on ReCoSoC 2007 : editorial}, issn = {0141-9331}, doi = {10.1016/j.micpro.2009.01.001}, year = {2009}, language = {en} } @article{BlankertzDornhegeKrauledatetal.2006, author = {Blankertz, Benjamin and Dornhege, Guido and Krauledat, Matthias and M{\"u}ller, Klaus-Robert and Kunzmann, Volker and Losch, Florian and Curio, Gabriel}, title = {The Berlin brain-computer interface : EEG-based communication without subject training}, issn = {1534-4320}, doi = {10.1109/Tnsre.2006.875557}, year = {2006}, abstract = {The Berlin Brain-Computer Interface (BBCI) project develops a noninvasive BCI system whose key features are 1) the use of well-established motor competences as control paradigms, 2) high-dimensional features from 128-channel electroencephalogram (EEG), and 3) advanced machine learning techniques. As reported earlier, our experiments demonstrate that very high information transfer rates can be achieved using the readiness potential (RP) when predicting the laterality of upcoming left-versus right-hand movements in healthy subjects. A more recent study showed that the RP similarily accompanies phantom movements in arm amputees, but the signal strength decreases with longer loss of the limb. In a complementary approach, oscillatory features are used to discriminate imagined movements (left hand versus right hand versus foot). In a recent feedback study with six healthy subjects with no or very little experience with BCI control, three subjects achieved an information transfer rate above 35 bits per minute (bpm), and further two subjects above 24 and 15 bpm, while one subject could not achieve any BCI control. These results are encouraging for an EEG-based BCI system in untrained subjects that is independent of peripheral nervous system activity and does not rely on evoked potentials even when compared to results with very well-trained subjects operating other BCI systems}, language = {en} } @phdthesis{Mueller2016, author = {M{\"u}ller, Stephan Heinz}, title = {Aggregates Caching for Enterprise Applications}, school = {Universit{\"a}t Potsdam}, pages = {167}, year = {2016}, abstract = {The introduction of columnar in-memory databases, along with hardware evolution, has made the execution of transactional and analytical enterprise application workloads on a single system both feasible and viable. Yet, we argue that executing analytical aggregate queries directly on the transactional data can decrease the overall system performance. Despite the aggregation capabilities of columnar in-memory databases, the direct access to records of a materialized aggregate is always more efficient than aggregating on the fly. The traditional approach to materialized aggregates, however, introduces significant overhead in terms of materialized view selection, maintenance, and exploitation. When this overhead is handled by the application, it increases the application complexity, and can slow down the transactional throughput of inserts, updates, and deletes. In this thesis, we motivate, propose, and evaluate the aggregate cache, a materialized aggregate engine in the main-delta architecture of a columnar in-memory database that provides efficient means to handle costly aggregate queries of enterprise applications. For our design, we leverage the specifics of the main-delta architecture that separates a table into a main and delta partition. The central concept is to only cache the partial aggregate query result as defined on the main partition of a table, because the main partition is relatively stable as records are only inserted into the delta partition. We contribute by proposing incremental aggregate maintenance and query compensation techniques for mixed workloads of enterprise applications. In addition, we introduce aggregate profit metrics that increase the likelihood of persisting the most profitable aggregates in the aggregate cache. Query compensation and maintenance of materialized aggregates based on joins of multiple tables is expensive due to the partitioned tables in the main-delta architecture. Our analysis of enterprise applications has revealed several data schema and workload patterns. This includes the observation that transactional data is persisted in header and item tables, whereas in many cases, the insertion of related header and item records is executed in a single database transaction. We contribute by proposing an approach to transport these application object semantics to the database system and optimize the query processing using the aggregate cache by applying partition pruning and predicate pushdown techniques. For the experimental evaluation, we propose the FICO benchmark that is based on data from a productive ERP system with extracted mixed workloads. Our evaluation reveals that the aggregate cache can accelerate the execution of aggregate queries up to a factor of 60 whereas the speedup highly depends on the number of aggregated records in the main and delta partitions. In mixed workloads, the proposed aggregate maintenance and query compensation techniques perform up to an order of magnitude better than traditional materialized aggregate maintenance approaches. The introduced aggregate profit metrics outperform existing costbased metrics by up to 20\%. Lastly, the join pruning and predicate pushdown techniques can accelerate query execution in the aggregate cache in the presence of multiple partitioned tables by up to an order of magnitude.}, language = {en} } @phdthesis{Kilic2016, author = {Kilic, Mukayil}, title = {Vernetztes Pr{\"u}fen von elektronischen Komponenten {\"u}ber das Internet}, school = {Universit{\"a}t Potsdam}, pages = {104, XVI}, year = {2016}, language = {de} } @article{WilligMitschke2006, author = {Willig, Andreas and Mitschke, Robert}, title = {Results of bit error measurements with sensor nodes and casuistic consequences for design of energy-efficient error control schemes}, isbn = {978-3-540-32158-3}, year = {2006}, abstract = {For the proper design of energy-efficient error control schemes some insight into channel error patterns is needed. This paper presents bit error and packet loss measurements taken with sensor nodes running the popular RFM}, language = {en} } @article{RozinatVanderAalst2006, author = {Rozinat, A and Van der Aalst, Wil M. P.}, title = {Conformance testing: Measuring the fit and appropriateness of event logs and process models}, year = {2006}, abstract = {Most information systems log events (e.g., transaction logs, audit traits) to audit and monitor the processes they support. At the same time, many of these processes have been explicitly modeled. For example, SAP R/3 logs events in transaction logs and there are EPCs (Event-driven Process Chains) describing the so-called reference models. These reference models describe how the system should be used. The coexistence of event logs and process models raises an interesting question: "Does the event log conform to the process model and vice versa?". This paper demonstrates that there is not a simple answer to this question. To tackle the problem, we distinguish two dimensions of conformance: fitness (the event log may be the result of the process modeled) and appropriateness (the model is a likely candidate from a structural and behavioral point of view). Different metrics have been defined and a Conformance Checker has been implemented within the ProM Framework}, language = {en} } @article{Konczak2006, author = {Konczak, Kathrin}, title = {Voting Theory in Answer Set Programming}, year = {2006}, language = {en} } @article{GerbserLeeLierler2006, author = {Gerbser, Martin and Lee, Joohyung and Lierler, Yuliya}, title = {Elementary sets for logic programs}, isbn = {978-1-57735-281-5}, year = {2006}, language = {en} } @article{Konczak2006, author = {Konczak, Kathrin}, title = {Weak order equivalence for Logic Programs with Prefernces}, year = {2006}, language = {en} } @book{HuettenrauchKylauGrundetal.2006, author = {H{\"u}ttenrauch, Stefan and Kylau, Uwe and Grund, Martin and Queck, Tobias and Ploskonos, Anna and Schreiter, Torben and Breest, Martin and Haubrock, S{\"o}ren and Bouche, Paul}, title = {Fundamentals of Service-Oriented Engineering}, series = {Technische Berichte des Hasso-Plattner-Instituts f{\"u}r Softwaresystemtechnik an der Universit{\"a}t Potsdam}, volume = {18}, journal = {Technische Berichte des Hasso-Plattner-Instituts f{\"u}r Softwaresystemtechnik an der Universit{\"a}t Potsdam}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {3-939469-35-1}, issn = {1613-5652}, year = {2006}, language = {en} } @book{KuropkaMeyer2005, author = {Kuropka, Dominik and Meyer, Harald}, title = {Survey on service composition}, series = {Technische Berichte des Hasso-Plattner-Instituts f{\"u}r Softwaresystemtechnik an der Universit{\"a}t Potsda}, volume = {10}, journal = {Technische Berichte des Hasso-Plattner-Instituts f{\"u}r Softwaresystemtechnik an der Universit{\"a}t Potsda}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {3-937786-78-3}, issn = {1613-5652}, pages = {35 S.}, year = {2005}, language = {en} } @article{KonczakVogel2005, author = {Konczak, Kathrin and Vogel, Ralf}, title = {Abduction and Preferences in Linguistics}, year = {2005}, language = {en} } @article{CaludeJurgensen2005, author = {Calude, C. S. and Jurgensen, Helmut}, title = {Is complexity a source of incompleteness?}, issn = {0196-8858}, year = {2005}, abstract = {In this paper we prove Chaitin's "heuristic principle," the theorems of a finitely-specified theory cannot be significantly more complex than the theory itself, for an appropriate measure of complexity. We show that the measure is invariant under the change of the Godel numbering. For this measure, the theorems of a finitely-specified, sound, consistent theory strong enough to formalize arithmetic which is arithmetically sound (like Zermelo-Fraenkel set theory with choice or Peano Arithmetic) have bounded complexity, hence every sentence of the theory which is significantly more complex than the theory is unprovable. Previous results showing that incompleteness is not accidental, but ubiquitous are here reinforced in probabilistic terms: the probability that a true sentence of length n is provable in the theory tends to zero when n tends to infinity, while the probability that a sentence of length n is true is strictly positive. (c) 2004 Elsevier Inc. All rights reserved}, language = {en} } @article{Bordihn2005, author = {Bordihn, Henning}, title = {On the number of components in cooperating distributed grammar systems}, issn = {0304-3975}, year = {2005}, abstract = {It is proved that the number of components in context-free cooperating distributed (CD) grammar systems can be reduced to 3 when they are working in the so-called sf-mode of derivation, which is the cooperation protocol which has been considered first for CD grammar systems. In this derivation mode, a component continues the derivation until and unless there is a nonterminal in the sentential form which cannot be rewritten according to that component. Moreover, it is shown that CD grammar systems in sf-mode with only one component can generate only the context-free languages but they can generate non-context-free languages if two components are used. The sf-mode of derivation is compared with other well-known cooperation protocols with respect to the hierarchies induced by the number of components. (C) 2004 Elsevier B.V. All rights reserved}, language = {en} } @article{BeerenwinkelSingLengaueretal.2005, author = {Beerenwinkel, Niko and Sing, Tobias and Lengauer, Thomas and Rahnenfuhrer, Joerg and Roomp, Kirsten and Savenkov, Igor and Fischer, Roman and Hoffmann, Daniel and Selbig, Joachim and Korn, Klaus and Walter, Hauke and Berg, Thomas and Braun, Patrick and Faetkenheuer, Gerd and Oette, Mark and Rockstroh, Juergen and Kupfer, Bernd and Kaiser, Rolf and Daeumer, Martin}, title = {Computational methods for the design of effective therapies against drug resistant HIV strains}, year = {2005}, abstract = {The development of drug resistance is a major obstacle to successful treatment of HIV infection. The extraordinary replication dynamics of HIV facilitates its escape from selective pressure exerted by the human immune system and by combination drug therapy. We have developed several computational methods whose combined use can support the design of optimal antiretroviral therapies based on viral genomic data}, language = {en} } @article{BrzozowskiJuergensen2005, author = {Brzozowski, J. A. and J{\"u}rgensen, Helmut}, title = {Representation of semiautomata by canonical words and equivalences}, issn = {0129-0541}, year = {2005}, abstract = {We study a novel representation of semiautomata, which is motivated by the method of trace-assertion specifications of software modules. Each state of the semiautomaton is represented by an arbitrary word leading to that state, the canonical word. The transitions of the semiautomaton give rise to a right congruence, the state-equivalence, on the set of input words of the semiautomaton: two words are state-equivalent if and only if they lead to the same state. We present a simple algorithm for finding a set of generators for state-equivalence. Directly from this set of generators, we construct a confluent prefix-rewriting system which permits us to transform any word to its canonical representative. In general, the rewriting system may allow infinite derivations. To address this issue, we impose the condition of prefix-continuity on the set of canonical words. A set is prefix-continuous if, whenever a word w and a prefix u of w axe in the set, then all the prefixes of w longer than u are also in the set. Prefix-continuous sets include prefix-free and prefix-closed sets as special cases. We prove that the rewriting system is Noetherian if and only if the set of canonical words is prefix-continuous. Furthermore, if the set of canonical words is prefix- continuous, then the set of rewriting rules is irredundant. We show that each prefix-continuous canonical set corresponds to a spanning forest of the semiautomaton}, language = {en} } @article{BordihnHolzerKutrib2005, author = {Bordihn, Henning and Holzer, Markus and Kutrib, Martin}, title = {Unsolvability levels of operation problems for subclasses of context-free languages}, issn = {0129-0541}, year = {2005}, abstract = {We investigate the operation problem for linear and deterministic context-free languages: Fix an operation on formal languages. Given linear (deterministic, respectively) context-free languages, is the application of this operation to the given languages still a linear (deterministic, respectively) context-free language? Besides the classical operations, for which the linear and deterministic context-free languages are not closed, we also consider the recently introduced root and power operation. We show non-semidecidability, to be more precise, we show completeness for the second level of the arithmetic hierarchy for all of the aforementioned operations, except for the power operation, if the underlying alphabet contains at least two letters. The result for the power opera, tion solves an open problem stated in Theoret. Comput. Sci. 314 (2004) 445-449}, language = {en} } @article{BruggemeierDovifatKubisch2005, author = {Bruggemeier, M. and Dovifat, A. and Kubisch, D.}, title = {Micropolitical innovation arenas as a tool for analyzing innovation processes in the context of electronic government}, issn = {0937-6429}, year = {2005}, abstract = {E-Government requires technical and organizational innovation. Research has already shown that the respective innovation process is complex and contingent upon specific organizational structures. Managing such innovation processes successfully is difficult. Drawing on assumptions of micropolitical behavior, a framework of innovation arenas is proposed. It supports the analysis of ongoing E-Government projects as well as the ex post investigation of successful or failed projects. Testing this framework in case studies already demonstrates its usefulness for individual actors making strategic choices about change management. Furthermore, the results indicate that many commonly held assumptions about successful change management have to be reconsidered}, language = {en} } @article{MeineckeZieheKurthsetal.2005, author = {Meinecke, Frank C. and Ziehe, Andreas and Kurths, J{\"u}rgen and M{\"u}ller, Klaus-Robert}, title = {Measuring phase synchronization of superimposed signals}, issn = {0031-9007}, year = {2005}, abstract = {Phase synchronization is an important phenomenon that occurs in a wide variety of complex oscillatory processes. Measuring phase synchronization can therefore help to gain fundamental insight into nature. In this Letter we point out that synchronization analysis techniques can detect spurious synchronization, if they are fed with a superposition of signals such as in electroencephalography or magnetoencephalography data. We show how techniques from blind source separation can help to nevertheless measure the true synchronization and avoid such pitfalls}, language = {en} } @article{ScholzKaplanGuyetal.2005, author = {Scholz, Matthias and Kaplan, F. and Guy, C. L. and Kopka, Joachim and Selbig, Joachim}, title = {Non-linear PCA : a missing data approach}, issn = {1367-4803}, year = {2005}, abstract = {Motivation: Visualizing and analysing the potential non-linear structure of a dataset is becoming an important task in molecular biology. This is even more challenging when the data have missing values. Results: Here, we propose an inverse model that performs non-linear principal component analysis (NLPCA) from incomplete datasets. Missing values are ignored while optimizing the model, but can be estimated afterwards. Results are shown for both artificial and experimental datasets. In contrast to linear methods, non-linear methods were able to give better missing value estimations for non-linear structured data. Application: We applied this technique to a time course of metabolite data from a cold stress experiment on the model plant Arabidopsis thaliana, and could approximate the mapping function from any time point to the metabolite responses. Thus, the inverse NLPCA provides greatly improved information for better understanding the complex response to cold stress}, language = {en} } @book{BenschBoldtBordihnetal.2004, author = {Bensch, Suna and Boldt, Oliver and Bordihn, Henning and J{\"u}rgensen, Helmut}, title = {Workshop "Formale Methoden der Linguistik" und "14. Theorietag Automaten und Formale Sprachen"}, series = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, volume = {2004, 2}, journal = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, publisher = {Univ.}, address = {Potsdam}, issn = {0946-7580}, pages = {144 S.}, year = {2004}, language = {de} } @book{KytmanovMyslivetsTarkhanov2004, author = {Kytmanov, Alexander M. and Myslivets, Simona and Tarkhanov, Nikolai Nikolaevich}, title = {Zeta-function of a nonlinear system}, series = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Mathematik, Arbeitsgruppe Partiell}, journal = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Mathematik, Arbeitsgruppe Partiell}, publisher = {Univ.}, address = {Potsdam}, issn = {1437-739X}, pages = {11 S.}, year = {2004}, language = {en} } @book{Tarkhanov2004, author = {Tarkhanov, Nikolai Nikolaevich}, title = {Harmonic integrals on domains with edges}, series = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Mathematik, Arbeitsgruppe Partiell}, journal = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Mathematik, Arbeitsgruppe Partiell}, publisher = {Univ.}, address = {Potsdam}, issn = {1437-739X}, pages = {41 S.}, year = {2004}, language = {en} } @book{KytmanovMyslivetsTarkhanov2004, author = {Kytmanov, Alexander M. and Myslivets, Simona and Tarkhanov, Nikolai Nikolaevich}, title = {Power sums of roots of a nonlinear system}, series = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Mathematik, Arbeitsgruppe Partiell}, journal = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Mathematik, Arbeitsgruppe Partiell}, publisher = {Univ.}, address = {Potsdam}, issn = {1437-739X}, pages = {12 S.}, year = {2004}, language = {en} } @book{OPUS4-14421, title = {Grundfragen Multimedialen Lehrens und Lernens : 2. Workshop GML2 2004}, editor = {Rebensburg, Klaus}, publisher = {Books on Demand}, address = {Norderstedt}, isbn = {3-8334-1573-8}, pages = {293 S. : Ill., graph. Darst.}, year = {2004}, abstract = {Tagungsband vom 2. Workshop GML² 2005 Dem Lernen und Lehren mit Neuen Medien werden in Zeiten der Informationsgesellschaft oft sagenhafte Eigenschaften zugeschrieben: es sei anschaulicher, attraktiver, motivierender, effizienter, kosteng{\"u}nstiger, gehe besser auf den Lernenden ein, steigere den Lernerfolg, orientiere sich mehr an den kognitiven Strukturen von Lernenden etc.. Damit wenigstens einige der genannten Vorteile wirksam werden, sind geeignete didaktische und methodische Modelle und Konzepte unverzichtbar. Hinzu kommen detaillierte Kenntnisse in der Gestaltung von Lernoberfl{\"a}chen, der technischen Realisierung von Lerninhalten, dem Aufbau lernf{\"o}rderlicher Strukturen und Betreuungskonzepte und dem Betrieb von teilweise virtuellen Universit{\"a}ten. Inwieweit gesteckte Ziele erreicht wurden, ist anhand von Evaluationsmaßnahmen zu ermitteln. S{\"a}mtliche Aspekte m{\"u}ssen bereits in die Planung entsprechender Angebote einbezogen werden.}, language = {de} } @article{CordesKaiserSelbig2006, author = {Cordes, Frank and Kaiser, Rolf and Selbig, Joachim}, title = {Bioinformatics approach to predicting HIV drug resistance}, issn = {1473-7159}, doi = {10.1586/14737159.6.2.207}, year = {2006}, abstract = {The emergence of drug resistance remains one of the most challenging issues in the treatment of HIV-1 infection. The extreme replication dynamics of HIV facilitates its escape from the selective pressure exerted by the human immune system and by the applied combination drug therapy. This article reviews computational methods whose combined use can support the design of optimal antiretroviral therapies based on viral genotypic and phenotypic data. Genotypic assays are based on the analysis of mutations associated with reduced drug susceptibility, but are difficult to interpret due to the numerous mutations and mutational patterns that confer drug resistance. Phenotypic resistance or susceptibility can be experimentally evaluated by measuring the inhibition of the viral replication in cell culture assays. However, this procedure is expensive and time consuming}, language = {en} } @article{LemmCurioHlushchuketal.2006, author = {Lemm, Steven and Curio, Gabriel and Hlushchuk, Yevhen and M{\"u}ller, Klaus-Robert}, title = {Enhancing the signal-to-noise ratio of ICA-based extracted ERPs}, issn = {0018-9294}, doi = {10.1109/Tbme.2006.870258}, year = {2006}, abstract = {When decomposing single trial electroencephalography it is a challenge to incorporate prior physiological knowledge. Here, we develop a method that uses prior information about the phase-locking property of event-related potentials in a regularization framework to bias a blind source separation algorithm toward an improved separation of single-trial phase-locked responses in terms of an increased signal-to-noise ratio. In particular, we suggest a transformation of the data, using weighted average of the single trial and trial-averaged response, that redirects the focus of source separation methods onto the subspace of event-related potentials. The practical benefit with respect to an improved separation of such components from ongoing background activity and extraneous noise is first illustrated on artificial data and finally verified in a real-world application of extracting single-trial somatosensory evoked potentials from multichannel EEG-recordings}, language = {en} } @phdthesis{Schuschel2006, author = {Schuschel, Hilmar}, title = {Integrierte Prozessplanung und -ausf{\"u}hrung}, address = {Potsdam}, pages = {135 S.}, year = {2006}, language = {de} }