@inproceedings{BynensVanLanduytTruyenetal.2010, author = {Bynens, Maarten and Van Landuyt, Dimitri and Truyen, Eddy and Joosen, Wouter}, title = {Towards reusable aspects: the callback mismatch problem}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-41347}, year = {2010}, abstract = {Because software development is increasingly expensive and timeconsuming, software reuse gains importance. Aspect-oriented software development modularizes crosscutting concerns which enables their systematic reuse. Literature provides a number of AOP patterns and best practices for developing reusable aspects based on compelling examples for concerns like tracing, transactions and persistence. However, such best practices are lacking for systematically reusing invasive aspects. In this paper, we present the 'callback mismatch problem'. This problem arises in the context of abstraction mismatch, in which the aspect is required to issue a callback to the base application. As a consequence, the composition of invasive aspects is cumbersome to implement, difficult to maintain and impossible to reuse. We motivate this problem in a real-world example, show that it persists in the current state-of-the-art, and outline the need for advanced aspectual composition mechanisms to deal with this.}, language = {en} } @inproceedings{GoltzPieth2010, author = {Goltz, Hans-Joachim and Pieth, Norbert}, title = {A tool for generating partition schedules of multiprocessor systems}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-41556}, year = {2010}, abstract = {A deterministic cycle scheduling of partitions at the operating system level is supposed for a multiprocessor system. In this paper, we propose a tool for generating such schedules. We use constraint based programming and develop methods and concepts for a combined interactive and automatic partition scheduling system. This paper is also devoted to basic methods and techniques for modeling and solving this partition scheduling problem. Initial application of our partition scheduling tool has proved successful and demonstrated the suitability of the methods used.}, language = {en} } @phdthesis{Ishebabi2010, author = {Ishebabi, Harold}, title = {Architecture synthesis for adaptive multiprocessor systems on chip}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-41316}, school = {Universit{\"a}t Potsdam}, year = {2010}, abstract = {This thesis presents methods for automated synthesis of flexible chip multiprocessor systems from parallel programs targeted at FPGAs to exploit both task-level parallelism and architecture customization. Automated synthesis is necessitated by the complexity of the design space. A detailed description of the design space is provided in order to determine which parameters should be modeled to facilitate automated synthesis by optimizing a cost function, the emphasis being placed on inclusive modeling of parameters from application, architectural and physical subspaces, as well as their joint coverage in order to avoid pre-constraining the design space. Given a parallel program and a set of an IP library, the automated synthesis problem is to simultaneously (i) select processors (ii) map and schedule tasks to them, and (iii) select one or several networks for inter-task communications such that design constraints and optimization objectives are met. The research objective in this thesis is to find a suitable model for automated synthesis, and to evaluate methods of using the model for architectural optimizations. Our contributions are a holistic approach for the design of such systems, corresponding models to facilitate automated synthesis, evaluation of optimization methods using state of the art integer linear and answer set programming, as well as the development of synthesis heuristics to solve runtime challenges.}, language = {en} } @inproceedings{Harrison2010, author = {Harrison, William}, title = {Malleability, obliviousness and aspects for broadcast service attachment}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-41389}, year = {2010}, abstract = {An important characteristic of Service-Oriented Architectures is that clients do not depend on the service implementation's internal assignment of methods to objects. It is perhaps the most important technical characteristic that differentiates them from more common object-oriented solutions. This characteristic makes clients and services malleable, allowing them to be rearranged at run-time as circumstances change. That improvement in malleability is impaired by requiring clients to direct service requests to particular services. Ideally, the clients are totally oblivious to the service structure, as they are to aspect structure in aspect-oriented software. Removing knowledge of a method implementation's location, whether in object or service, requires re-defining the boundary line between programming language and middleware, making clearer specification of dependence on protocols, and bringing the transaction-like concept of failure scopes into language semantics as well. This paper explores consequences and advantages of a transition from object-request brokering to service-request brokering, including the potential to improve our ability to write more parallel software.}, language = {en} } @inproceedings{Schrijvers2010, author = {Schrijvers, Tom}, title = {Overview of the monadic constraint programming framework}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-41411}, year = {2010}, abstract = {A constraint programming system combines two essential components: a constraint solver and a search engine. The constraint solver reasons about satisfiability of conjunctions of constraints, and the search engine controls the search for solutions by iteratively exploring a disjunctive search tree defined by the constraint program. The Monadic Constraint Programming framework gives a monadic definition of constraint programming where the solver is defined as a monad threaded through the monadic search tree. Search and search strategies can then be defined as firstclass objects that can themselves be built or extended by composable search transformers. Search transformers give a powerful and unifying approach to viewing search in constraint programming, and the resulting constraint programming system is first class and extremely flexible.}, language = {en} } @book{GellerHirschfeldBracha2010, author = {Geller, Felix and Hirschfeld, Robert and Bracha, Gilad}, title = {Pattern Matching for an object-oriented and dynamically typed programming language}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-065-6}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-43035}, publisher = {Universit{\"a}t Potsdam}, pages = {81}, year = {2010}, abstract = {Pattern matching is a well-established concept in the functional programming community. It provides the means for concisely identifying and destructuring values of interest. This enables a clean separation of data structures and respective functionality, as well as dispatching functionality based on more than a single value. Unfortunately, expressive pattern matching facilities are seldomly incorporated in present object-oriented programming languages. We present a seamless integration of pattern matching facilities in an object-oriented and dynamically typed programming language: Newspeak. We describe language extensions to improve the practicability and integrate our additions with the existing programming environment for Newspeak. This report is based on the first author's master's thesis.}, language = {en} } @misc{RepsilberKernTelaaretal.2010, author = {Repsilber, Dirk and Kern, Sabine and Telaar, Anna and Walzl, Gerhard and Black, Gillian F. and Selbig, Joachim and Parida, Shreemanta K. and Kaufmann, Stefan H. E. and Jacobsen, Marc}, title = {Biomarker discovery in heterogeneous tissue samples}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {854}, issn = {1866-8372}, doi = {10.25932/publishup-42934}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-429343}, pages = {17}, year = {2010}, abstract = {Background: For heterogeneous tissues, such as blood, measurements of gene expression are confounded by relative proportions of cell types involved. Conclusions have to rely on estimation of gene expression signals for homogeneous cell populations, e.g. by applying micro-dissection, fluorescence activated cell sorting, or in-silico deconfounding. We studied feasibility and validity of a non-negative matrix decomposition algorithm using experimental gene expression data for blood and sorted cells from the same donor samples. Our objective was to optimize the algorithm regarding detection of differentially expressed genes and to enable its use for classification in the difficult scenario of reversely regulated genes. This would be of importance for the identification of candidate biomarkers in heterogeneous tissues. Results: Experimental data and simulation studies involving noise parameters estimated from these data revealed that for valid detection of differential gene expression, quantile normalization and use of non-log data are optimal. We demonstrate the feasibility of predicting proportions of constituting cell types from gene expression data of single samples, as a prerequisite for a deconfounding-based classification approach. Classification cross-validation errors with and without using deconfounding results are reported as well as sample-size dependencies. Implementation of the algorithm, simulation and analysis scripts are available. Conclusions: The deconfounding algorithm without decorrelation using quantile normalization on non-log data is proposed for biomarkers that are difficult to detect, and for cases where confounding by varying proportions of cell types is the suspected reason. In this case, a deconfounding ranking approach can be used as a powerful alternative to, or complement of, other statistical learning approaches to define candidate biomarkers for molecular diagnosis and prediction in biomedicine, in realistically noisy conditions and with moderate sample sizes.}, language = {en} } @article{ReinhardtMascherGueletal.2010, author = {Reinhardt, Wolfgang and Mascher, Michael and G{\"u}l, Senol and Magenheim, Johannes}, title = {Integration eines Rapid-Feedback-Moduls in eine koaktive Lern- und Arbeitsumgebung}, series = {Commentarii informaticae didacticae : (CID)}, journal = {Commentarii informaticae didacticae : (CID)}, number = {4}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {1868-0844}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-64339}, pages = {53 -- 58}, year = {2010}, abstract = {Die Evaluierung von Lehrveranstaltungen hat in vielen Lehreinrichtungen eine lange Tradition. In diesen klassischen Evaluierungsszenarien werden einmalig pro Semester Umfrageb{\"o}gen an die Studierenden verteilt und anschließend manuell ausgewertet. Die Ergebnisse sind dann zumeist am Ende der Vorlesungszeit vorhanden und geben einen punktuellen Einblick in die Qualit{\"a}t der Lehrveranstaltung bis zum Zeitpunkt der durchgef{\"u}hrten Evaluation. In diesem Artikel stellen wir das Konzept des Rapid Feedback, seine Einsatzm{\"o}glichkeiten in universit{\"a}ren Lehrveranstaltungen und eine prototypische Integration in eine koaktive Lern- und Arbeitsumgebung vor.}, language = {de} } @book{LangeBoehmNaumann2010, author = {Lange, Dustin and B{\"o}hm, Christoph and Naumann, Felix}, title = {Extracting structured information from Wikipedia articles to populate infoboxes}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-081-6}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-45714}, publisher = {Universit{\"a}t Potsdam}, pages = {27}, year = {2010}, abstract = {Roughly every third Wikipedia article contains an infobox - a table that displays important facts about the subject in attribute-value form. The schema of an infobox, i.e., the attributes that can be expressed for a concept, is defined by an infobox template. Often, authors do not specify all template attributes, resulting in incomplete infoboxes. With iPopulator, we introduce a system that automatically populates infoboxes of Wikipedia articles by extracting attribute values from the article's text. In contrast to prior work, iPopulator detects and exploits the structure of attribute values for independently extracting value parts. We have tested iPopulator on the entire set of infobox templates and provide a detailed analysis of its effectiveness. For instance, we achieve an average extraction precision of 91\% for 1,727 distinct infobox template attributes.}, language = {en} } @book{WistSchaeferVogleretal.2010, author = {Wist, Dominic and Schaefer, Mark and Vogler, Walter and Wollowski, Ralf}, title = {STG decomposition : internal communication for SI implementability}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-037-3}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-40786}, publisher = {Universit{\"a}t Potsdam}, pages = {36}, year = {2010}, abstract = {STG decomposition is a promising approach to tackle the complexity problems arising in logic synthesis of speed independent circuits, a robust asynchronous (i.e. clockless) circuit type. Unfortunately, STG decomposition can result in components that in isolation have irreducible CSC conflicts. Generalising earlier work, it is shown how to resolve such conflicts by introducing internal communication between the components via structural techniques only.}, language = {en} }