@article{ChengvandenBerghZengetal.2013,
  author    = {Cheng, Shifeng and van den Bergh, Erik and Zeng, Peng and Zhong, Xiao and Xu, Jiajia and Liu, Xin and Hofberger, Johannes and de Bruijn, Suzanne and Bhide, Amey S. and Kuelahoglu, Canan and Bian, Chao and Chen, Jing and Fan, Guangyi and Kaufmann, Kerstin and Hall, Jocelyn C. and Becker, Annette and Br{\"a}utigam, Andrea and Weber, Andreas P. M. and Shi, Chengcheng and Zheng, Zhijun and Li, Wujiao and Lv, Mingju and Tao, Yimin and Wang, Junyi and Zou, Hongfeng and Quan, Zhiwu and Hibberd, Julian M. and Zhang, Gengyun and Zhu, Xin-Guang and Xu, Xun and Schranz, M. Eric},
  title     = {The Tarenaya hassleriana Genome Provides insight Into Reproductive Trait and Genome Evolution of Crucifers},
  series = {The plant cell},
  volume    = {25},
  journal   = {The plant cell},
  number    = {8},
  publisher = {American Society of Plant Physiologists},
  address   = {Rockville},
  issn      = {1040-4651},
  doi       = {10.1105/tpc.113.113480},
  pages     = {2813 -- 2830},
  year      = {2013},
  abstract  = {The Brassicaceae, including Arabidopsis thaliana and Brassica crops, is unmatched among plants in its wealth of genomic and functional molecular data and has long served as a model for understanding gene, genome, and trait evolution. However, genome information from a phylogenetic outgroup that is essential for inferring directionality of evolutionary change has been lacking. We therefore sequenced the genome of the spider flower (Tarenaya hassleriana) from the Brassicaceae sister family, the Cleomaceae. By comparative analysis of the two lineages, we show that genome evolution following ancient polyploidy and gene duplication events affect reproductively important traits. We found an ancient genome triplication in Tarenaya (Th-alpha) that is independent of the Brassicaceae-specific duplication (At-alpha) and nested Brassica (Br-a) triplication. To showcase the potential of sister lineage genome analysis, we investigated the state of floral developmental genes and show Brassica retains twice as many floral MADS (for MINICHROMOSOME MAINTENANCE1, AGAMOUS, DEFICIENS and SERUM RESPONSE FACTOR) genes as Tarenaya that likely contribute to morphological diversity in Brassica. We also performed synteny analysis of gene families that confer self-incompatibility in Brassicaceae and found that the critical SERINE RECEPTOR KINASE receptor gene is derived from a lineage-specific tandem duplication. The T. hassleriana genome will facilitate future research toward elucidating the evolutionary history of Brassicaceae genomes.},
  language  = {en}
}
@article{ChenLiZhangetal.2019,
  author    = {Chen, Shun-Gang and Li, Ji and Zhang, Fan and Xiao, Bo and Hu, Jia-Ming and Cui, Yin-Qiu and Hofreiter, Michael and Hou, Xin-Dong and Sheng, Gui-Lian and Lai, Xu-Long and Yuan, Jun-Xia},
  title     = {Different maternal lineages revealed by ancient mitochondrial genome of Camelus bactrianus from China},
  series = {Mitochondrial DNA Part A},
  volume    = {30},
  journal   = {Mitochondrial DNA Part A},
  number    = {7},
  publisher = {Routledge, Taylor \& Francis Group},
  address   = {Abingdon},
  issn      = {2470-1394},
  doi       = {10.1080/24701394.2019.1659250},
  pages     = {786 -- 793},
  year      = {2019},
  abstract  = {Domestic Bactrian camel (Camelus bactrianus) used to be one of the most important livestock species in Chinese history, as well as the major transport carrier on the ancient Silk Road. However, archeological studies on Chinese C. bactrianus are still limited, and molecular biology research on this species is mainly focused on modern specimens. In this study, we retrieved the complete mitochondrial genome from a C. bactrianus specimen, which was excavated from northwestern China and dated at 1290-1180 cal. Phylogenetic analyses using 18 mitochondrial genomes indicated that the C. bactrianus clade was divided into two maternal lineages. The majority of samples originating from Iran to Japan and Mongolia belong to subclade A1, while our sample together with two Mongolian individuals formed the much smaller subclade A2. Furthermore, the divergence time of these two maternal lineages was estimated as 165 Kya (95\% credibility interval 117-222 Kya), this might indicate that several different evolutionary lineages were incorporated into the domestic gene pool during the initial domestication process. Bayesian skyline plot (BSP) analysis a slow increase in female effective population size of C. bactrianus from 5000 years ago, which to the beginning of domestication of C. bactrianus. The present study also revealed that there were extensive exchanges of genetic information among C. bactrianus populations in regions along the Silk Road.},
  language  = {en}
}
@article{FanStegmannSchrappeetal.,
  author    = {Fan, Xin and Stegmann, Mikkel B. and Schrappe, Oliver and Zeidler, Steffen and Jensen, Isac G. and Thorsen, Jannich and Bjerregaard, Tobias and Krstić, Miloš},
  title     = {Frequency-domain optimization of digital switching noise based on clock scheduling},
  series = {IEEE Transactions on Circuits and Systems I},
  volume    = {63},
  journal   = {IEEE Transactions on Circuits and Systems I},
  number    = {7},
  issn      = {1549-8328},
  doi       = {10.1109/TCSI.2016.2546118},
  pages     = {982 -- 993},
  abstract  = {The simultaneous switching activity in digital circuits challenges the design of mixed-signal SoCs. Rather than focusing on time-domain noise voltage minimization, this work optimizes switching noise in the frequency domain. A two-tier solution based on the on-chip clock scheduling is proposed. First, to cope with the switching noise at the fundamental clock frequency, which usually dominates in terms of noise power, a two-phase clocking scheme is employed for system timing. Second, on-chip clock latencies are manipulated to target harmonic peaks in specific frequency bands for the spectral noise optimization. An automated design flow, which allows for noise optimization in user-defined application-specific frequency bands, is developed. The effectiveness of our design solution is validated by measurements of substrate noise and conductive EMI (electromagnetic interference) noise on a test chip, which consists of four wireless sensor node baseband processors each addressing a distinct clock-tree-synthesis strategy. Compared to the reference synchronous design, the proposed clock scheduling solution substantially reduces noise in the target GSM-850 band, i.e., by 11.1 dB on the substrate noise and 12.9 dB on the EMI noise, along with dramatic noise peak drops measured at the 50-MHz clock frequency.},
  language  = {en}
}