@article{ReeveNicholsonAltafetal.2022, author = {Reeve, Holly A. and Nicholson, Jake and Altaf, Farieha and Lonsdale, Thomas H. and Preissler, Janina and Lauterbach, Lars and Lenz, Oliver and Leimk{\"u}hler, Silke and Hollmann, Frank and Paul, Caroline E. and Vincent, Kylie A.}, title = {A hydrogen-driven biocatalytic approach to recycling synthetic analogues of NAD(P)H}, series = {Chemical communications : ChemComm}, volume = {58}, journal = {Chemical communications : ChemComm}, number = {75}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1359-7345}, doi = {10.1039/d2cc02411j}, pages = {10540 -- 10543}, year = {2022}, abstract = {We demonstrate a recycling system for synthetic nicotinamide cofactor analogues using a soluble hydrogenase with turnover number of >1000 for reduction of the cofactor analogues by H-2. Coupling this system to an ene reductase, we show quantitative conversion of N-ethylmaleimide to N-ethylsuccinimide. The biocatalyst system retained >50\% activity after 7 h.}, language = {en} } @misc{JeltschBontePe'eretal.2013, author = {Jeltsch, Florian and Bonte, Dries and Pe'er, Guy and Reineking, Bj{\"o}rn and Leimgruber, Peter and Balkenhol, Niko and Schr{\"o}der-Esselbach, Boris and Buchmann, Carsten M. and M{\"u}ller, Thomas and Blaum, Niels and Zurell, Damaris and B{\"o}hning-Gaese, Katrin and Wiegand, Thorsten and Eccard, Jana and Hofer, Heribert and Reeg, Jette and Eggers, Ute and Bauer, Silke}, title = {Integrating movement ecology with biodiversity research}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-401177}, pages = {13}, year = {2013}, abstract = {Movement of organisms is one of the key mechanisms shaping biodiversity, e.g. the distribution of genes, individuals and species in space and time. Recent technological and conceptual advances have improved our ability to assess the causes and consequences of individual movement, and led to the emergence of the new field of 'movement ecology'. Here, we outline how movement ecology can contribute to the broad field of biodiversity research, i.e. the study of processes and patterns of life among and across different scales, from genes to ecosystems, and we propose a conceptual framework linking these hitherto largely separated fields of research. Our framework builds on the concept of movement ecology for individuals, and demonstrates its importance for linking individual organismal movement with biodiversity. First, organismal movements can provide 'mobile links' between habitats or ecosystems, thereby connecting resources, genes, and processes among otherwise separate locations. Understanding these mobile links and their impact on biodiversity will be facilitated by movement ecology, because mobile links can be created by different modes of movement (i.e., foraging, dispersal, migration) that relate to different spatiotemporal scales and have differential effects on biodiversity. Second, organismal movements can also mediate coexistence in communities, through 'equalizing' and 'stabilizing' mechanisms. This novel integrated framework provides a conceptual starting point for a better understanding of biodiversity dynamics in light of individual movement and space-use behavior across spatiotemporal scales. By illustrating this framework with examples, we argue that the integration of movement ecology and biodiversity research will also enhance our ability to conserve diversity at the genetic, species, and ecosystem levels.}, language = {en} } @article{JeltschBontePeeretal.2013, author = {Jeltsch, Florian and Bonte, Dries and Peer, Guy and Reineking, Bj{\"o}rn and Leimgruber, Peter and Balkenhol, Niko and Schr{\"o}der-Esselbach, Boris and Buchmann, Carsten M. and M{\"u}ller, Thomas and Blaum, Niels and Zurell, Damaris and B{\"o}hning-Gaese, Katrin and Wiegand, Thorsten and Eccard, Jana and Hofer, Heribert and Reeg, Jette and Eggers, Ute and Bauer, Silke}, title = {Integrating movement ecology with biodiversity research - exploring new avenues to address spatiotemporal biodiversity dynamics}, doi = {10.1186/2051-3933-1-6}, year = {2013}, language = {en} } @misc{FrenkenAlacidBergeretal.2017, author = {Frenken, Thijs and Alacid, Elisabet and Berger, Stella A. and Bourne, Elizabeth Charlotte and Gerphagnon, Melanie and Grossart, Hans-Peter and Gsell, Alena S. and Ibelings, Bas W. and Kagami, Maiko and Kupper, Frithjof C. and Letcher, Peter M. and Loyau, Adeline and Miki, Takeshi and Nejstgaard, Jens C. and Rasconi, Serena and Rene, Albert and Rohrlack, Thomas and Rojas-Jimenez, Keilor and Schmeller, Dirk S. and Scholz, Bettina and Seto, Kensuke and Sime-Ngando, Telesphore and Sukenik, Assaf and Van de Waal, Dedmer B. and Van den Wyngaert, Silke and Van Donk, Ellen and Wolinska, Justyna and Wurzbacher, Christian and Agha, Ramsy}, title = {Integrating chytrid fungal parasites into plankton ecology: research gaps and needs}, series = {Environmental microbiology}, volume = {19}, journal = {Environmental microbiology}, publisher = {Wiley}, address = {Hoboken}, issn = {1462-2912}, doi = {10.1111/1462-2920.13827}, pages = {3802 -- 3822}, year = {2017}, abstract = {Chytridiomycota, often referred to as chytrids, can be virulent parasites with the potential to inflict mass mortalities on hosts, causing e.g. changes in phytoplankton size distributions and succession, and the delay or suppression of bloom events. Molecular environmental surveys have revealed an unexpectedly large diversity of chytrids across a wide range of aquatic ecosystems worldwide. As a result, scientific interest towards fungal parasites of phytoplankton has been gaining momentum in the past few years. Yet, we still know little about the ecology of chytrids, their life cycles, phylogeny, host specificity and range. Information on the contribution of chytrids to trophic interactions, as well as co-evolutionary feedbacks of fungal parasitism on host populations is also limited. This paper synthesizes ideas stressing the multifaceted biological relevance of phytoplankton chytridiomycosis, resulting from discussions among an international team of chytrid researchers. It presents our view on the most pressing research needs for promoting the integration of chytrid fungi into aquatic ecology.}, language = {en} } @misc{IlicicWoodhouseKarstenetal.2023, author = {Ilicic, Doris and Woodhouse, Jason Nicholas and Karsten, Ulf and Zimmermann, Jonas and Wichard, Thomas and Quartino, Maria Liliana and Campana, Gabriela Laura and Livenets, Alexandra and Van den Wyngaert, Silke and Grossart, Hans-Peter}, title = {Antarctic Glacial Meltwater Impacts the Diversity of Fungal Parasites Associated With Benthic Diatoms in Shallow Coastal Zones}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {1290}, issn = {1866-8372}, doi = {10.25932/publishup-57289}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-572895}, pages = {14}, year = {2023}, abstract = {Aquatic ecosystems are frequently overlooked as fungal habitats, although there is increasing evidence that their diversity and ecological importance are greater than previously considered. Aquatic fungi are critical and abundant components of nutrient cycling and food web dynamics, e.g., exerting top-down control on phytoplankton communities and forming symbioses with many marine microorganisms. However, their relevance for microphytobenthic communities is almost unexplored. In the light of global warming, polar regions face extreme changes in abiotic factors with a severe impact on biodiversity and ecosystem functioning. Therefore, this study aimed to describe, for the first time, fungal diversity in Antarctic benthic habitats along the salinity gradient and to determine the co-occurrence of fungal parasites with their algal hosts, which were dominated by benthic diatoms. Our results reveal that Ascomycota and Chytridiomycota are the most abundant fungal taxa in these habitats. We show that also in Antarctic waters, salinity has a major impact on shaping not just fungal but rather the whole eukaryotic community composition, with a diversity of aquatic fungi increasing as salinity decreases. Moreover, we determined correlations between putative fungal parasites and potential benthic diatom hosts, highlighting the need for further systematic analysis of fungal diversity along with studies on taxonomy and ecological roles of Chytridiomycota.}, language = {en} } @article{IlicicWoodhouseKarstenetal.2022, author = {Ilicic, Doris and Woodhouse, Jason Nicholas and Karsten, Ulf and Zimmermann, Jonas and Wichard, Thomas and Quartino, Maria Liliana and Campana, Gabriela Laura and Livenets, Alexandra and Van den Wyngaert, Silke and Grossart, Hans-Peter}, title = {Antarctic Glacial Meltwater Impacts the Diversity of Fungal Parasites Associated With Benthic Diatoms in Shallow Coastal Zones}, series = {Frontiers in microbiology}, journal = {Frontiers in microbiology}, number = {13}, publisher = {Frontiers Media}, address = {Lausanne}, issn = {1664-302X}, doi = {10.3389/fmicb.2022.805694}, pages = {12}, year = {2022}, abstract = {Aquatic ecosystems are frequently overlooked as fungal habitats, although there is increasing evidence that their diversity and ecological importance are greater than previously considered. Aquatic fungi are critical and abundant components of nutrient cycling and food web dynamics, e.g., exerting top-down control on phytoplankton communities and forming symbioses with many marine microorganisms. However, their relevance for microphytobenthic communities is almost unexplored. In the light of global warming, polar regions face extreme changes in abiotic factors with a severe impact on biodiversity and ecosystem functioning. Therefore, this study aimed to describe, for the first time, fungal diversity in Antarctic benthic habitats along the salinity gradient and to determine the co-occurrence of fungal parasites with their algal hosts, which were dominated by benthic diatoms. Our results reveal that Ascomycota and Chytridiomycota are the most abundant fungal taxa in these habitats. We show that also in Antarctic waters, salinity has a major impact on shaping not just fungal but rather the whole eukaryotic community composition, with a diversity of aquatic fungi increasing as salinity decreases. Moreover, we determined correlations between putative fungal parasites and potential benthic diatom hosts, highlighting the need for further systematic analysis of fungal diversity along with studies on taxonomy and ecological roles of Chytridiomycota.}, language = {en} } @article{SpillingSchulzPauletal.2016, author = {Spilling, Kristian and Schulz, Kai G. and Paul, Allanah J. and Boxhammer, Tim and Achterberg, Eric Pieter and Hornick, Thomas and Lischka, Silke and Stuhr, Annegret and Bermudez, Rafael and Czerny, Jan and Crawfurd, Kate and Brussaard, Corina P. D. and Grossart, Hans-Peter and Riebesell, Ulf}, title = {Effects of ocean acidification on pelagic carbon fluxes in a mesocosm experiment}, series = {Biogeosciences}, volume = {13}, journal = {Biogeosciences}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1726-4170}, doi = {10.5194/bg-13-6081-2016}, pages = {6081 -- 6093}, year = {2016}, abstract = {About a quarter of anthropogenic CO2 emissions are currently taken up by the oceans, decreasing seawater pH. We performed a mesocosm experiment in the Baltic Sea in order to investigate the consequences of increasing CO2 levels on pelagic carbon fluxes. A gradient of different CO2 scenarios, ranging from ambient (similar to 370 mu atm) to high (similar to 1200 mu atm), were set up in mesocosm bags (similar to 55m(3)). We determined standing stocks and temporal changes of total particulate carbon (TPC), dissolved organic carbon (DOC), dissolved inorganic carbon (DIC), and particulate organic carbon (POC) of specific plankton groups. We also measured carbon flux via CO2 exchange with the atmosphere and sedimentation (export), and biological rate measurements of primary production, bacterial production, and total respiration. The experiment lasted for 44 days and was divided into three different phases (I: t0-t16; II: t17-t30; III: t31-t43). Pools of TPC, DOC, and DIC were approximately 420, 7200, and 25 200 mmol Cm-2 at the start of the experiment, and the initial CO2 additions increased the DIC pool by similar to 7\% in the highest CO2 treatment. Overall, there was a decrease in TPC and increase of DOC over the course of the experiment. The decrease in TPC was lower, and increase in DOC higher, in treatments with added CO2. During phase I the estimated gross primary production (GPP) was similar to 100 mmol C m(-2) day(-1), from which 75-95\% was respired, similar to 1\% ended up in the TPC (including export), and 5-25\% was added to the DOC pool. During phase II, the respiration loss increased to similar to 100\% of GPP at the ambient CO2 concentration, whereas respiration was lower (85-95\% of GPP) in the highest CO2 treatment. Bacterial production was similar to 30\% lower, on average, at the highest CO2 concentration than in the controls during phases II and III. This resulted in a higher accumulation of DOC and lower reduction in the TPC pool in the elevated CO2 treatments at the end of phase II extending throughout phase III. The "extra" organic carbon at high CO2 remained fixed in an increasing biomass of small-sized plankton and in the DOC pool, and did not transfer into large, sinking aggregates. Our results revealed a clear effect of increasing CO2 on the carbon budget and mineralization, in particular under nutrient limited conditions. Lower carbon loss processes (respiration and bacterial remineralization) at elevated CO2 levels resulted in higher TPC and DOC pools than ambient CO2 concentration. These results highlight the importance of addressing not only net changes in carbon standing stocks but also carbon fluxes and budgets to better disentangle the effects of ocean acidification.}, language = {en} } @misc{SpillingSchulzPauletal.2016, author = {Spilling, Kristian and Schulz, Kai Georg and Paul, Allanah J. and Boxhammer, Tim and Achterberg, Eric Pieter and Hornick, Thomas and Lischka, Silke and Stuhr, Annegret and Berm{\´u}dez, Rafael and Czerny, Jan and Crawfurd, Kate and Brussaard, Corina P. D. and Grossart, Hans-Peter and Riebesell, Ulf}, title = {Effects of ocean acidification on pelagic carbon fluxes in a mesocosm experiment}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {544}, issn = {1866-8372}, doi = {10.25932/publishup-41183}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-411835}, pages = {13}, year = {2016}, abstract = {About a quarter of anthropogenic CO2 emissions are currently taken up by the oceans, decreasing seawater pH. We performed a mesocosm experiment in the Baltic Sea in order to investigate the consequences of increasing CO2 levels on pelagic carbon fluxes. A gradient of different CO2 scenarios, ranging from ambient (similar to 370 mu atm) to high (similar to 1200 mu atm), were set up in mesocosm bags (similar to 55m(3)). We determined standing stocks and temporal changes of total particulate carbon (TPC), dissolved organic carbon (DOC), dissolved inorganic carbon (DIC), and particulate organic carbon (POC) of specific plankton groups. We also measured carbon flux via CO2 exchange with the atmosphere and sedimentation (export), and biological rate measurements of primary production, bacterial production, and total respiration. The experiment lasted for 44 days and was divided into three different phases (I: t0-t16; II: t17-t30; III: t31-t43). Pools of TPC, DOC, and DIC were approximately 420, 7200, and 25 200 mmol Cm-2 at the start of the experiment, and the initial CO2 additions increased the DIC pool by similar to 7\% in the highest CO2 treatment. Overall, there was a decrease in TPC and increase of DOC over the course of the experiment. The decrease in TPC was lower, and increase in DOC higher, in treatments with added CO2. During phase I the estimated gross primary production (GPP) was similar to 100 mmol C m(-2) day(-1), from which 75-95\% was respired, similar to 1\% ended up in the TPC (including export), and 5-25\% was added to the DOC pool. During phase II, the respiration loss increased to similar to 100\% of GPP at the ambient CO2 concentration, whereas respiration was lower (85-95\% of GPP) in the highest CO2 treatment. Bacterial production was similar to 30\% lower, on average, at the highest CO2 concentration than in the controls during phases II and III. This resulted in a higher accumulation of DOC and lower reduction in the TPC pool in the elevated CO2 treatments at the end of phase II extending throughout phase III. The "extra" organic carbon at high CO2 remained fixed in an increasing biomass of small-sized plankton and in the DOC pool, and did not transfer into large, sinking aggregates. Our results revealed a clear effect of increasing CO2 on the carbon budget and mineralization, in particular under nutrient limited conditions. Lower carbon loss processes (respiration and bacterial remineralization) at elevated CO2 levels resulted in higher TPC and DOC pools than ambient CO2 concentration. These results highlight the importance of addressing not only net changes in carbon standing stocks but also carbon fluxes and budgets to better disentangle the effects of ocean acidification.}, language = {en} }