@article{ChristianMayKempaetal.2009, author = {Christian, Nils and May, Patrick and Kempa, Stefan and Handorf, Thomas and Ebenhoeh, Oliver}, title = {An integrative approach towards completing genome-scale metabolic networks}, issn = {1742-206X}, doi = {10.1039/B915913b}, year = {2009}, abstract = {Genome-scale metabolic networks which have been automatically derived through sequence comparison techniques are necessarily incomplete. We propose a strategy that incorporates genomic sequence data and metabolite profiles into modeling approaches to arrive at improved gene annotations and more complete genome-scale metabolic networks. The core of our strategy is an algorithm that computes minimal sets of reactions by which a draft network has to be extended in order to be consistent with experimental observations. A particular strength of our approach is that alternative possibilities are suggested and thus experimentally testable hypotheses are produced. We carefully evaluate our strategy on the well-studied metabolic network of Escherichia coli, demonstrating how the predictions can be improved by incorporating sequence data. Subsequently, we apply our method to the recently sequenced green alga Chlamydomonas reinhardtii. We suggest specific genes in the genome of Chlamydomonas which are the strongest candidates for coding the responsible enzymes.}, language = {en} } @article{WeberAbuAyyashAbueladasetal.2009, author = {Weber, Michael H. and Abu-Ayyash, Khalil and Abueladas, Abdel-Rahman and Agnon, Amotz and Alasonati-Taš{\´a}rov{\´a}, Zuzana and Al-Zubi, Hashim and Babeyko, Andrey and Bartov, Yuval and Bauer, Klaus and Becken, Michael and Bedrosian, Paul A. and Ben-Avraham, Zvi and Bock, G{\"u}nter and Bohnhoff, Marco and Bribach, Jens and Dulski, Peter and Ebbing, Joerg and El-Kelani, Radwan J. and Foerster, Andrea and F{\"o}rster, Hans-J{\"u}rgen and Frieslander, Uri and Garfunkel, Zvi and G{\"o}tze, Hans-J{\"u}rgen and Haak, Volker and Haberland, Christian and Hassouneh, Mohammed and Helwig, Stefan L. and Hofstetter, Alfons and Hoffmann-Rothe, Arne and Jaeckel, Karl-Heinz and Janssen, Christoph and Jaser, Darweesh and Kesten, Dagmar and Khatib, Mohammed Ghiath and Kind, Rainer and Koch, Olaf and Koulakov, Ivan and Laske, Maria Gabi and Maercklin, Nils}, title = {Anatomy of the Dead Sea transform from lithospheric to microscopic scale}, issn = {8755-1209}, doi = {10.1029/2008rg000264}, year = {2009}, abstract = {Fault zones are the locations where motion of tectonic plates, often associated with earthquakes, is accommodated. Despite a rapid increase in the understanding of faults in the last decades, our knowledge of their geometry, petrophysical properties, and controlling processes remains incomplete. The central questions addressed here in our study of the Dead Sea Transform (DST) in the Middle East are as follows: (1) What are the structure and kinematics of a large fault zone? (2) What controls its structure and kinematics? (3) How does the DST compare to other plate boundary fault zones? The DST has accommodated a total of 105 km of left-lateral transform motion between the African and Arabian plates since early Miocene (similar to 20 Ma). The DST segment between the Dead Sea and the Red Sea, called the Arava/Araba Fault (AF), is studied here using a multidisciplinary and multiscale approach from the mu m to the plate tectonic scale. We observe that under the DST a narrow, subvertical zone cuts through crust and lithosphere. First, from west to east the crustal thickness increases smoothly from 26 to 39 km, and a subhorizontal lower crustal reflector is detected east of the AF. Second, several faults exist in the upper crust in a 40 km wide zone centered on the AF, but none have kilometer-size zones of decreased seismic velocities or zones of high electrical conductivities in the upper crust expected for large damage zones. Third, the AF is the main branch of the DST system, even though it has accommodated only a part (up to 60 km) of the overall 105 km of sinistral plate motion. Fourth, the AF acts as a barrier to fluids to a depth of 4 km, and the lithology changes abruptly across it. Fifth, in the top few hundred meters of the AF a locally transpressional regime is observed in a 100-300 m wide zone of deformed and displaced material, bordered by subparallel faults forming a positive flower structure. Other segments of the AF have a transtensional character with small pull-aparts along them. The damage zones of the individual faults are only 5-20 m wide at this depth range. Sixth, two areas on the AF show mesoscale to microscale faulting and veining in limestone sequences with faulting depths between 2 and 5 km. Seventh, fluids in the AF are carried downward into the fault zone. Only a minor fraction of fluids is derived from ascending hydrothermal fluids. However, we found that on the kilometer scale the AF does not act as an important fluid conduit. Most of these findings are corroborated using thermomechanical modeling where shear deformation in the upper crust is localized in one or two major faults; at larger depth, shear deformation occurs in a 20-40 km wide zone with a mechanically weak decoupling zone extending subvertically through the entire lithosphere.}, language = {en} } @article{KuehnSorgenfreiGiangrisostomietal.2018, author = {K{\"u}hn, Danilo and Sorgenfrei, Florian and Giangrisostomi, Erika and Jay, Raphael and Musazay, Abdurrahman and Ovsyannikov, Ruslan and Strahlman, Christian and Svensson, Svante and M{\aa}rtensson, Nils and F{\"o}hlisch, Alexander}, title = {Capabilities of angle resolved time of flight electron spectroscopy with the 60 degrees wide angle acceptance lens}, series = {Journal of electron spectroscopy and related phenomena : the international journal on theoretical and experimental aspects of electron spectroscopy}, volume = {224}, journal = {Journal of electron spectroscopy and related phenomena : the international journal on theoretical and experimental aspects of electron spectroscopy}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0368-2048}, doi = {10.1016/j.elspec.2017.06.008}, pages = {45 -- 50}, year = {2018}, abstract = {The simultaneous detection of energy, momentum and temporal information in electron spectroscopy is the key aspect to enhance the detection efficiency in order to broaden the range of scientific applications. Employing a novel 60 degrees wide angle acceptance lens system, based on an additional accelerating electron optical element, leads to a significant enhancement in transmission over the previously employed 30 degrees electron lenses. Due to the performance gain, optimized capabilities for time resolved electron spectroscopy and other high transmission applications with pulsed ionizing radiation have been obtained. The energy resolution and transmission have been determined experimentally utilizing BESSY II as a photon source. Four different and complementary lens modes have been characterized. (C) 2017 The Authors. Published by Elsevier B.V.}, language = {en} } @article{MaercklinBedrosianHaberlandetal.2005, author = {Maercklin, Nils and Bedrosian, Paul A. and Haberland, Christian and Ritter, O. and Ryberg, Trond and Weber, Michael H. and Weckmann, Ute}, title = {Characterizing a large shear-zone with seismic and magnetotelluric methods : the case of the Dead Sea Transform}, issn = {0094-8276}, year = {2005}, abstract = {Seismic tomography, imaging of seismic scatterers, and magnetotelluric soundings reveal a sharp lithologic contrast along a similar to 10 km long segment of the Arava Fault (AF), a prominent fault of the southern Dead Sea Transform (DST) in the Middle East. Low seismic velocities and resistivities occur on its western side and higher values east of it, and the boundary between the two units coincides partly with a seismic scattering image. At 1 - 4 km depth the boundary is offset to the east of the AF surface trace, suggesting that at least two fault strands exist, and that slip occurred on multiple strands throughout the margin's history. A westward fault jump, possibly associated with straightening of a fault bend, explains both our observations and the narrow fault zone observed by others}, language = {en} } @article{MaercklinHaberlandRybergetal.2004, author = {Maercklin, Nils and Haberland, Christian and Ryberg, Trond and Weber, Michael H. and Bartov, Yosef}, title = {Imaging the Dead Sea Transform with scattered seismic waves}, issn = {0956-540X}, year = {2004}, abstract = {With controlled seismic sources and specifically designed receiver arrays, we image a subvertical boundary between two lithological blocks at the Arava Fault (AF) in the Middle East. The AF is the main strike-slip fault of the Dead Sea Transform (DST) in the segment between the Dead Sea and the Red Sea. Our imaging (migration) method is based on array beamforming and coherence analysis of P to P scattered seismic phases. We use a 1-D background velocity model and the direct P arrival as a reference phase. Careful resolution testing is necessary, because the target volume is irregularly sampled by rays. A spread function describing energy dispersion at localized point scatterers and synthetic calculations for large planar structures provides estimates of the resolution of the images. We resolve a 7 km long steeply dipping reflector offset roughly 1 km from the surface trace of the AF. The reflector can be imaged from about 1 km down to 4 km depth. Previous and ongoing studies in this region have shown a strong contrast across the fault: low seismic velocities and electrical resistivities to the west and high velocities and resistivities to the east of it. We therefore suggest that the imaged reflector marks the contrast between young sedimentary fill in the west and Precambrian rocks in the east. If correct, the boundary between the two blocks is offset about 1 km east of the current surface trace of the AF}, language = {en} } @article{HellwigBarthelsSalffneretal.2009, author = {Hellwig, Christian and Barthels, Nils and Salffner, Katharina and Siepchen, Bastian and Weber, Christian and Krassen, Henning}, title = {Ist unser Klima noch zu retten?}, year = {2009}, language = {de} } @article{ImholtReilEccardetal.2015, author = {Imholt, Christian and Reil, Daniela and Eccard, Jana and Jacob, Daniela and Hempelmann, Nils and Jacob, Jens}, title = {Quantifying the past and future impact of climate on outbreak patterns of bank voles (Myodes glareolus)}, series = {Pest management science}, volume = {71}, journal = {Pest management science}, number = {2}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {1526-498X}, doi = {10.1002/ps.3838}, pages = {166 -- 172}, year = {2015}, abstract = {BACKGROUND Central European outbreak populations of the bank vole (Myodes glareolus Schreber) are known to cause damage in forestry and to transmit the most common type of Hantavirus (Puumala virus, PUUV) to humans. A sound estimation of potential effects of future climate scenarios on population dynamics is a prerequisite for long-term management strategies. Historic abundance time series were used to identify the key weather conditions associated with bank vole abundance, and were extrapolated to future climate scenarios to derive potential long-term changes in bank vole abundance dynamics. RESULTS Classification and regression tree analysis revealed the most relevant weather parameters associated with high and low bank vole abundances. Summer temperatures 2 years prior to trapping had the highest impact on abundance fluctuation. Extrapolation of the identified parameters to future climate conditions revealed an increase in years with high vole abundance. CONCLUSION Key weather patterns associated with vole abundance reflect the importance of superabundant food supply through masting to the occurrence of bank vole outbreaks. Owing to changing climate, these outbreaks are predicted potentially to increase in frequency 3-4-fold by the end of this century. This may negatively affect damage patterns in forestry and the risk of human PUUV infection in the long term. (c) 2014 Society of Chemical Industry}, language = {en} } @article{AmbergausdemMooreBekketal.2022, author = {Amberg, Maximilian and aus dem Moore, Nils and Bekk, Anke and Bergmann, Tobias and Edenhofer, Ottmar and Flachsland, Christian and George, Jan and Haywood, Luke and Heinemann, Maik and Held, Anne and Kalkuhl, Matthias and Kellner, Maximilian and Koch, Nicolas and Luderer, Gunnar and Meyer, Henrika and Nikodinoska, Dragana and Pahle, Michael and Roolfs, Christina and Schill, Wolf-Peter}, title = {Reformoptionen f{\"u}r ein nachhaltiges Steuer- und Abgabensystem}, series = {Perspektiven der Wirtschaftspolitik}, volume = {23}, journal = {Perspektiven der Wirtschaftspolitik}, number = {3}, publisher = {De Gruyter}, address = {Berlin}, issn = {1465-6493}, doi = {10.1515/pwp-2021-0051}, pages = {165 -- 199}, year = {2022}, abstract = {Steuern und Abgaben auf Produkte oder Verbrauch mit gesellschaftlichen Folgekosten (externe Kosten) - sogenannte Pigou- oder Lenkungssteuern - sind ein gesellschaftliches „Win-Win-Instrument". Sie verbessern die Wohlfahrt und sch{\"u}tzen gleichzeitig die Umwelt und das Klima. Dies wird erreicht, indem umweltsch{\"a}digende Aktivit{\"a}ten einen Preis bekommen, der m{\"o}glichst exakt der H{\"o}he des Schadens entspricht. Eine konsequente Bepreisung der externen Kosten nach diesem Prinzip k{\"o}nnte in Deutschland erhebliche zus{\"a}tzliche Einnahmen erbringen: Basierend auf bisherigen Studien zu externen Kosten w{\"a}ren zus{\"a}tzliche Einnahmen in der Gr{\"o}ßenordnung von 348 bis 564 Milliarden Euro pro Jahr (44 bis 71 Prozent der gesamten Steuereinnahmen) m{\"o}glich. Die Autoren warnen allerdings, dass die Bezifferung der externen Kosten mit erheblichen Unsicherheiten verbunden ist. Damit Lenkungssteuern und -abgaben ihre positiven Lenkungs- und Wohlstandseffekte voll entfalten k{\"o}nnen, seien zudem institutionelle Reformen notwendig.}, language = {de} } @article{WeberAbuAyyashAbueladasetal.2004, author = {Weber, Michael H. and Abu-Ayyash, Khalil and Abueladas, Abdel-Rahman and Agnon, Amotz and Al-Amoush, H. and Babeyko, Andrey and Bartov, Yosef and Baumann, M. and Ben-Avraham, Zvi and Bock, G{\"u}nter and Bribach, Jens and El-Kelani, R. and Forster, A. and F{\"o}rster, Hans-J{\"u}rgen and Frieslander, U. and Garfunkel, Zvi and Grunewald, Steffen and Gotze, Hans-J{\"u}rgen and Haak, Volker and Haberland, Christian and Hassouneh, Mohammed and Helwig, S. and Hofstetter, Alfons and Jackel, K. H. and Kesten, Dagmar and Kind, Rainer and Maercklin, Nils and Mechie, James and Mohsen, Amjad and Neubauer, F. M. and Oberh{\"a}nsli, Roland and Qabbani, I. and Ritter, O. and Rumpker, G. and Rybakov, M. and Ryberg, Trond and Scherbaum, Frank and Schmidt, J. and Schulze, A. and Sobolev, Stephan Vladimir and Stiller, M. and Th,}, title = {The crustal structure of the Dead Sea Transform}, year = {2004}, abstract = {To address one of the central questions of plate tectonics-How do large transform systems work and what are their typical features?-seismic investigations across the Dead Sea Transform (DST), the boundary between the African and Arabian plates in the Middle East, were conducted for the first time. A major component of these investigations was a combined reflection/ refraction survey across the territories of Palestine, Israel and Jordan. The main results of this study are: (1) The seismic basement is offset by 3-5 km under the DST, (2) The DST cuts through the entire crust, broadening in the lower crust, (3) Strong lower crustal reflectors are imaged only on one side of the DST, (4) The seismic velocity sections show a steady increase in the depth of the crust-mantle transition (Moho) from 26 km at the Mediterranean to 39 km under the Jordan highlands, with only a small but visible, asymmetric topography of the Moho under the DST. These observations can be linked to the left-lateral movement of 105 km of the two plates in the last 17 Myr, accompanied by strong deformation within a narrow zone cutting through the entire crust. Comparing the DST and the San Andreas Fault (SAF) system, a strong asymmetry in subhorizontal lower crustal reflectors and a deep reaching deformation zone both occur around the DST and the SAF. The fact that such lower crustal reflectors and deep deformation zones are observed in such different transform systems suggests that these structures are possibly fundamental features of large transform plate boundaries}, language = {en} } @article{JoestHenselKappeletal.2016, author = {J{\"o}st, Moritz and Hensel, Goetz and Kappel, Christian and Druka, Arnis and Sicard, Adrien and Hohmann, Uwe and Beier, Sebastian and Himmelbach, Axel and Waugh, Robbie and Kumlehn, Jochen and Stein, Nils and Lenhard, Michael}, title = {The INDETERMINATE DOMAIN Protein BROAD LEAF1 Limits Barley Leaf Width by Restricting Lateral Proliferation}, series = {Current biology}, volume = {26}, journal = {Current biology}, publisher = {Cell Press}, address = {Cambridge}, issn = {0960-9822}, doi = {10.1016/j.cub.2016.01.047}, pages = {903 -- 909}, year = {2016}, abstract = {Variation in the size, shape, and positioning of leaves as the major photosynthetic organs strongly impacts crop yield, and optimizing these aspects is a central aim of cereal breeding [1, 2]. Leaf growth in grasses is driven by cell proliferation and cell expansion in a basal growth zone [3]. Although several factors influencing final leaf size and shape have been identified from rice and maize [4-14], what limits grass leaf growth in the longitudinal or transverse directions during leaf development remains poorly understood. To identify factors involved in this process, we characterized the barley mutant broad leaf1 (blf1). Mutants form wider but slightly shorter leaves due to changes in the numbers of longitudinal cell files and of cells along the leaf length. These differences arise during primordia outgrowth because of more cell divisions in the width direction increasing the number of cell files. Positional cloning, analysis of independent alleles, and transgenic complementation confirm that BLF1 encodes a presumed transcriptional regulator of the INDETERMINATE DOMAIN family. In contrast to loss-of-function mutants, moderate overexpression of BLF1 decreases leaf width below wild-type levels. A functional BLF1-vYFP fusion protein expressed from the endogenous promoter shows a dynamic expression pattern in the shoot apical meristem and young leaf primordia. Thus, we propose that the BLF1 gene regulates barley leaf size by restricting cell proliferation in the leaf-width direction. Given the agronomic importance of canopy traits in cereals, identifying functionally different BLF1 alleles promises to allow for the generation of optimized cereal ideotypes.}, language = {en} } @article{HavingaKoolAchilleetal.2016, author = {Havinga, Reinout and Kool, Anneleen and Achille, Frederic and Bavcon, Joze and Berg, Christian and Bonomi, Costantino and Burkart, Michael and De Meyere, Dirk and Havstrom, Mats and Kessler, Paul and Knickmann, Barbara and Koester, Nils and Martinez, Remy and Ostgaard, Havard and Ravnjak, Blanka and Scheen, Anne-Cathrine and Smith, Pamela and Smith, Paul and Socher, Stephanie A. and Vange, Vibekke}, title = {The Index Seminum: Seeds of change for seed exchange}, series = {Taxon}, volume = {65}, journal = {Taxon}, publisher = {International Association for Plant Taxonomy}, address = {Bratislava}, issn = {0040-0262}, doi = {10.12705/652.9}, pages = {333 -- 336}, year = {2016}, abstract = {Botanic gardens have been exchanging seeds through seed catalogues for centuries. In many gardens, these catalogues remain an important source of plant material. Living collections have become more relevant for genetic analysis and derived research, since genomics of non-model organisms heavily rely on living material. The range of species that is made available annually on all seed lists combined, provides an unsurpassed source of instantly accessible plant material for research collections. Still, the Index Seminum has received criticism in the past few decades. The current exchange model dictates that associated data is manually entered into each database. The amount of time involved and the human errors occurring in this process are difficult to justify when the data was initially produced as a report from another database. The authors propose that an online marketplace for seed exchange should be established, with enhanced search possibilities and downloadable accession data in a standardised format. Such online service should preferably be supervised and coordinated by Botanic Gardens Conservation International (BGCI). This manuscript is the outcome of a workshop on July 9th, 2015, at the European botanic gardens congress "Eurogard VII" in Paris, where the first two authors invited members of the botanic garden community to discuss how the anachronistic Index Seminum can be transformed into an improved and modern tool for seed exchange.}, language = {en} } @article{OttoMareljaSchoofsetal.2018, author = {Otto, Nils and Marelja, Zvonimir and Schoofs, Andreas and Kranenburg, Holger and Bittern, Jonas and Yildirim, Kerem and Berh, Dimitri and Bethke, Maria and Thomas, Silke and Rode, Sandra and Risse, Benjamin and Jiang, Xiaoyi and Pankratz, Michael and Leimk{\"u}hler, Silke and Kl{\"a}mbt, Christian}, title = {The sulfite oxidase Shopper controls neuronal activity by regulating glutamate homeostasis in Drosophila ensheathing glia}, series = {Nature Communications}, volume = {9}, journal = {Nature Communications}, publisher = {Nature Publ. Group}, address = {London}, issn = {2041-1723}, doi = {10.1038/s41467-018-05645-z}, pages = {12}, year = {2018}, abstract = {Specialized glial subtypes provide support to developing and functioning neural networks. Astrocytes modulate information processing by neurotransmitter recycling and release of neuromodulatory substances, whereas ensheathing glial cells have not been associated with neuromodulatory functions yet. To decipher a possible role of ensheathing glia in neuronal information processing, we screened for glial genes required in the Drosophila central nervous system for normal locomotor behavior. Shopper encodes a mitochondrial sulfite oxidase that is specifically required in ensheathing glia to regulate head bending and peristalsis. shopper mutants show elevated sulfite levels affecting the glutamate homeostasis which then act on neuronal network function. Interestingly, human patients lacking the Shopper homolog SUOX develop neurological symptoms, including seizures. Given an enhanced expression of SUOX by oligodendrocytes, our findings might indicate that in both invertebrates and vertebrates more than one glial cell type may be involved in modulating neuronal activity.}, language = {en} } @article{FondellEckertJayetal.2017, author = {Fondell, Mattis and Eckert, Sebastian and Jay, Raphael Martin and Weniger, Christian and Quevedo, Wilson and Niskanen, Johannes and Kennedy, Brian and Sorgenfrei, Florian and Schick, Daniel and Giangrisostomi, Erika and Ovsyannikov, Ruslan and Adamczyk, Katrin and Huse, Nils and Wernet, Philippe and Mitzner, Rolf and F{\"o}hlisch, Alexander}, title = {Time-resolved soft X-ray absorption spectroscopy in transmission mode on liquids at MHz repetition rates}, series = {Structural dynamics}, volume = {4}, journal = {Structural dynamics}, publisher = {American Institute of Physics}, address = {Melville}, issn = {2329-7778}, doi = {10.1063/1.4993755}, pages = {11}, year = {2017}, abstract = {We present a setup combining a liquid flatjet sample delivery and a MHz laser system for time-resolved soft X-ray absorption measurements of liquid samples at the high brilliance undulator beamline UE52-SGM at Bessy II yielding unprecedented statistics in this spectral range. We demonstrate that the efficient detection of transient absorption changes in transmission mode enables the identification of photoexcited species in dilute samples. With iron(II)-trisbipyridine in aqueous solution as a benchmark system, we present absorption measurements at various edges in the soft X-ray regime. In combination with the wavelength tunability of the laser system, the set-up opens up opportunities to study the photochemistry of many systems at low concentrations, relevant to materials sciences, chemistry, and biology. (C) 2017 Author(s).}, language = {en} }