@article{EckertBeyePietzschetal.2015, author = {Eckert, Sebastian and Beye, Martin and Pietzsch, Annette and Quevedo, Wilson and Hantschmann, Markus and Ochmann, Miguel and Ross, Matthew and Minitti, Michael P. and Turner, Joshua J. and Moeller, Stefan P. and Schlotter, William F. and Dakovski, Georgi L. and Khalil, Munira and Huse, Nils and F{\"o}hlisch, Alexander}, title = {Principles of femtosecond X-ray/optical cross-correlation with X-ray induced transient optical reflectivity in solids}, series = {Applied physics letters}, volume = {106}, journal = {Applied physics letters}, number = {6}, publisher = {American Institute of Physics}, address = {Melville}, issn = {0003-6951}, doi = {10.1063/1.4907949}, pages = {4}, year = {2015}, abstract = {The discovery of ultrafast X-ray induced optical reflectivity changes enabled the development of X-ray/optical cross correlation techniques at X-ray free electron lasers worldwide. We have now linked through experiment and theory the fundamental excitation and relaxation steps with the transient optical properties in finite solid samples. Therefore, we gain a thorough interpretation and an optimized detection scheme of X-ray induced changes to the refractive index and the X-ray/optical cross correlation response. (C) 2015 AIP Publishing LLC.}, language = {en} } @misc{EckertNorellMiedemaetal.2017, author = {Eckert, Sebastian and Norell, Jesper and Miedema, Piter S. and Beye, Martin and Fondell, Mattis and Quevedo, Wilson and Kennedy, Brian and Hantschmann, Markus and Pietzsch, Annette and van Kuiken, Benjamin E. and Ross, Matthew and Minitti, Michael P. and Moeller, Stefan P. and Schlotter, William F. and Khalil, Munira and Odelius, Michael and F{\"o}hlisch, Alexander}, title = {Untersuchung unabh{\"a}ngiger N-H- und N-C-Bindungsverformungen auf ultrakurzen Zeitskalen mit resonanter inelastischer R{\"o}ntgenstreuung}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {1121}, issn = {1866-8372}, doi = {10.25932/publishup-43668}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-436688}, pages = {7}, year = {2017}, abstract = {Die Femtosekundendynamik nach resonanten Photoanregungen mit optischen und R{\"o}ntgenpulsen erm{\"o}glicht eine selektive Verformung von chemischen N-H- und N-C-Bindungen in 2-Thiopyridon in w{\"a}ssriger L{\"o}sung. Die Untersuchung der orbitalspezifischen elektronischen Struktur und ihrer Dynamik auf ultrakurzen Zeitskalen mit resonanter inelastischer R{\"o}ntgenstreuung an der N1s-Resonanz am Synchrotron und dem Freie-Elektronen-Laser LCLS in Kombination mit quantenchemischen Multikonfigurationsberechnungen erbringen den direkten Nachweis dieser kontrollierten photoinduzierten Molek{\"u}lverformungen und ihrer ultrakurzen Zeitskala.}, language = {de} } @misc{EckertNorellMiedemaetal.2017, author = {Eckert, Sebastian and Norell, Jesper and Miedema, Piter S. and Beye, Martin and Fondell, Mattis and Quevedo, Wilson and Kennedy, Brian and Hantschmann, Markus and Pietzsch, Annette and van Kuiken, Benjamin E. and Ross, Matthew and Minitti, Michael P. and Moeller, Stefan P. and Schlotter, William F. and Khalil, Munira and Odelius, Michael and F{\"o}hlisch, Alexander}, title = {Ultrafast Independent N-H and N-C Bond Deformation Investigated with Resonant Inelastic X-Ray Scattering}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {1115}, issn = {1866-8372}, doi = {10.25932/publishup-43687}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-436873}, pages = {7}, year = {2017}, abstract = {The femtosecond excited-state dynamics following resonant photoexcitation enable the selective deformation of N-H and N-C chemical bonds in 2-thiopyridone in aqueous solution with optical or X-ray pulses. In combination with multiconfigurational quantum-chemical calculations, the orbital-specific electronic structure and its ultrafast dynamics accessed with resonant inelastic X-ray scattering at the N 1s level using synchrotron radiation and the soft X-ray free-electron laser LCLS provide direct evidence for this controlled photoinduced molecular deformation and its ultrashort time-scale.}, language = {en} } @article{HustonKornhuberMuehleetal.2016, author = {Huston, Joseph P. and Kornhuber, Johannes and Muehle, Christiane and Japtok, Lukasz and Komorowski, Mara and Mattern, Claudia and Reichel, Martin and Gulbins, Erich and Kleuser, Burkhard and Topic, Bianca and Silva, Maria A. De Souza and Mueller, Christian P.}, title = {A sphingolipid mechanism for behavioral extinction}, series = {Journal of neurochemistry}, volume = {137}, journal = {Journal of neurochemistry}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0022-3042}, doi = {10.1111/jnc.13537}, pages = {589 -- 603}, year = {2016}, abstract = {Reward-dependent instrumental behavior must continuously be re-adjusted according to environmental conditions. Failure to adapt to changes in reward contingencies may incur psychiatric disorders like anxiety and depression. When an expected reward is omitted, behavior undergoes extinction. While extinction involves active re-learning, it is also accompanied by emotional behaviors indicative of frustration, anxiety, and despair (extinction-induced depression). Here, we report evidence for a sphingolipid mechanism in the extinction of behavior. Rapid extinction, indicating efficient re-learning, coincided with a decrease in the activity of the enzyme acid sphingomyelinase (ASM), which catalyzes turnover of sphingomyelin to ceramide, in the dorsal hippocampus of rats. The stronger the decline in ASM activity, the more rapid was the extinction. Sphingolipid-focused lipidomic analysis showed that this results in a decline of local ceramide species in the dorsal hippocampus. Ceramides shape the fluidity of lipid rafts in synaptic membranes and by that way can control neural plasticity. We also found that aging modifies activity of enzymes and ceramide levels in selective brain regions. Aging also changed how the chronic treatment with corticosterone (stress) or intranasal dopamine modified regional enzyme activity and ceramide levels, coinciding with rate of extinction. These data provide first evidence for a functional ASM-ceramide pathway in the brain involved in the extinction of learned behavior. This finding extends the known cellular mechanisms underlying behavioral plasticity to a new class of membrane-located molecules, the sphingolipids, and their regulatory enzymes, and may offer new treatment targets for extinction- and learning-related psychopathological conditions.}, language = {en} } @misc{AlHalbouniHolohanTaherietal.2018, author = {Al-Halbouni, Djamil and Holohan, Eoghan P. and Taheri, Abbas and Sch{\"o}pfer, Martin P. J. and Emam, Sacha and Dahm, Torsten}, title = {Geomechanical modelling of sinkhole development using distinct elements}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {1061}, issn = {1866-8372}, doi = {10.25932/publishup-46843}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-468435}, pages = {35}, year = {2018}, abstract = {Mechanical and/or chemical removal of material from the subsurface may generate large subsurface cavities, the destabilisation of which can lead to ground collapse and the formation of sinkholes. Numerical simulation of the interaction of cavity growth, host material deformation and overburden collapse is desirable to better understand the sinkhole hazard but is a challenging task due to the involved high strains and material discontinuities. Here, we present 2-D distinct element method numerical simulations of cavity growth and sinkhole development. Firstly, we simulate cavity formation by quasi-static, stepwise removal of material in a single growing zone of an arbitrary geometry and depth. We benchmark this approach against analytical and boundary element method models of a deep void space in a linear elastic material. Secondly, we explore the effects of properties of different uniform materials on cavity stability and sinkhole development. We perform simulated biaxial tests to calibrate macroscopic geotechnical parameters of three model materials representative of those in which sinkholes develop at the Dead Sea shoreline: mud, alluvium and salt. We show that weak materials do not support large cavities, leading to gradual sagging or suffusion-style subsidence. Strong materials support quasi-stable to stable cavities, the overburdens of which may fail suddenly in a caprock or bedrock collapse style. Thirdly, we examine the consequences of layered arrangements of weak and strong materials. We find that these are more susceptible to sinkhole collapse than uniform materials not only due to a lower integrated strength of the overburden but also due to an inhibition of stabilising stress arching. Finally, we compare our model sinkhole geometries to observations at the Ghor Al-Haditha sinkhole site in Jordan. Sinkhole depth ∕ diameter ratios of 0.15 in mud, 0.37 in alluvium and 0.33 in salt are reproduced successfully in the calibrated model materials. The model results suggest that the observed distribution of sinkhole depth ∕ diameter values in each material type may partly reflect sinkhole growth trends.}, language = {en} } @article{AlHalbouniHolohanTaherietal.2019, author = {Al-Halbouni, Djamil and Holohan, Eoghan P. and Taheri, Abbas and Watson, Robert A. and Polom, Ulrich and Schoepfer, Martin P. J. and Emam, Sacha and Dahm, Torsten}, title = {Distinct element geomechanical modelling of the formation of sinkhole clusters within large-scale karstic depressions}, series = {Solid earth}, volume = {10}, journal = {Solid earth}, number = {4}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1869-9510}, doi = {10.5194/se-10-1219-2019}, pages = {1219 -- 1241}, year = {2019}, abstract = {The 2-D distinct element method (DEM) code (PFC2D_V5) is used here to simulate the evolution of subsidence-related karst landforms, such as single and clustered sinkholes, and associated larger-scale depressions. Subsurface material in the DEM model is removed progressively to produce an array of cavities; this simulates a network of subsurface groundwater conduits growing by chemical/mechanical erosion. The growth of the cavity array is coupled mechanically to the gravitationally loaded surroundings, such that cavities can grow also in part by material failure at their margins, which in the limit can produce individual collapse sinkholes. Two end-member growth scenarios of the cavity array and their impact on surface subsidence were examined in the models: (1) cavity growth at the same depth level and growth rate; (2) cavity growth at progressively deepening levels with varying growth rates. These growth scenarios are characterised by differing stress patterns across the cavity array and its overburden, which are in turn an important factor for the formation of sinkholes and uvalalike depressions. For growth scenario (1), a stable compression arch is established around the entire cavity array, hindering sinkhole collapse into individual cavities and favouring block-wise, relatively even subsidence across the whole cavity array. In contrast, for growth scenario (2), the stress system is more heterogeneous, such that local stress concentrations exist around individual cavities, leading to stress interactions and local wall/overburden fractures. Consequently, sinkhole collapses occur in individual cavities, which results in uneven, differential subsidence within a larger-scale depression. Depending on material properties of the cavity-hosting material and the overburden, the larger-scale depression forms either by sinkhole coalescence or by widespread subsidence linked geometrically to the entire cavity array. The results from models with growth scenario (2) are in close agreement with surface morphological and subsurface geophysical observations from an evaporite karst area on the eastern shore of the Dead Sea.}, language = {en} } @article{deJongKukrejaTrabantetal.2013, author = {de Jong, S. and Kukreja, R. and Trabant, C. and Pontius, N. and Chang, C. F. and Kachel, T. and Beye, Martin and Sorgenfrei, Nomi and Back, C. H. and Braeuer, B. and Schlotter, W. F. and Turner, J. J. and Krupin, O. and Doehler, M. and Zhu, D. and Hossain, M. A. and Scherz, A. O. and Fausti, D. and Novelli, F. and Esposito, M. and Lee, W. S. and Chuang, Y. D. and Lu, D. H. and Moore, R. G. and Yi, M. and Trigo, M. and Kirchmann, P. and Pathey, L. and Golden, M. S. and Buchholz, Marcel and Metcalf, P. and Parmigiani, F. and Wurth, W. and F{\"o}hlisch, Alexander and Schuessler-Langeheine, Christian and Duerr, H. A.}, title = {Speed limit of the insulator-metal transition in magnetite}, series = {Nature materials}, volume = {12}, journal = {Nature materials}, number = {10}, publisher = {Nature Publ. Group}, address = {London}, issn = {1476-1122}, doi = {10.1038/NMAT3718}, pages = {882 -- 886}, year = {2013}, abstract = {As the oldest known magnetic material, magnetite (Fe3O4) has fascinated mankind for millennia. As the first oxide in which a relationship between electrical conductivity and fluctuating/localized electronic order was shown(1), magnetite represents a model system for understanding correlated oxides in general. Nevertheless, the exact mechanism of the insulator-metal, or Verwey, transition has long remained inaccessible(2-8). Recently, three- Fe- site lattice distortions called trimeronswere identified as the characteristic building blocks of the low-temperature insulating electronically ordered phase(9). Here we investigate the Verwey transition with pump- probe X- ray diffraction and optical reflectivity techniques, and show how trimerons become mobile across the insulator-metal transition. We find this to be a two- step process. After an initial 300 fs destruction of individual trimerons, phase separation occurs on a 1.5 +/- 0.2 ps timescale to yield residual insulating and metallic regions. This work establishes the speed limit for switching in future oxide electronics(10).}, language = {en} } @article{NideverOlsenWalkeretal.2017, author = {Nidever, David L. and Olsen, Knut and Walker, Alistair R. and Katherina Vivas, A. and Blum, Robert D. and Kaleida, Catherine and Choi, Yumi and Conn, Blair C. and Gruendl, Robert A. and Bell, Eric F. and Besla, Gurtina and Munoz, Ricardo R. and Gallart, Carme and Martin, Nicolas F. and Olszewski, Edward W. and Saha, Abhijit and Monachesi, Antonela and Monelli, Matteo and de Boer, Thomas J. L. and Johnson, L. Clifton and Zaritsky, Dennis and Stringfellow, Guy S. and van der Marel, Roeland P. and Cioni, Maria-Rosa L. and Jin, Shoko and Majewski, Steven R. and Martinez-Delgado, David and Monteagudo, Lara and Noel, Noelia E. D. and Bernard, Edouard J. and Kunder, Andrea and Chu, You-Hua and Bell, Cameron P. M. and Santana, Felipe and Frechem, Joshua and Medina, Gustavo E. and Parkash, Vaishali and Seron Navarrete, J. C. and Hayes, Christian}, title = {SMASH: Survey of the MAgellanic Stellar History}, series = {The astronomical journal}, volume = {154}, journal = {The astronomical journal}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0004-6256}, doi = {10.3847/1538-3881/aa8d1c}, pages = {310 -- 326}, year = {2017}, abstract = {The Large and Small Magellanic Clouds are unique local laboratories for studying the formation and evolution of small galaxies in exquisite detail. The Survey of the MAgellanic Stellar History (SMASH) is an NOAO community Dark Energy Camera (DECam) survey of the Clouds mapping 480 deg2 (distributed over similar to 2400 square degrees at similar to 20\% filling factor) to similar to 24th. mag in ugriz. The primary goals of SMASH are to identify low surface brightness stellar populations associated with the stellar halos and tidal debris of the Clouds, and to derive spatially resolved star formation histories. Here, we present a summary of the survey, its data reduction, and a description of the first public Data Release (DR1). The SMASH DECam data have been reduced with a combination of the NOAO Community Pipeline, the PHOTRED automated point-spread-function photometry pipeline, and custom calibration software. The astrometric precision is similar to 15 mas and the accuracy is similar to 2 mas with respect to the Gaia reference frame. The photometric precision is similar to 0.5\%-0.7\% in griz and similar to 1\% in u with a calibration accuracy of similar to 1.3\% in all bands. The median 5s point source depths in ugriz are 23.9, 24.8, 24.5, 24.2, and 23.5 mag. The SMASH data have already been used to discover the Hydra II Milky Way satellite, the SMASH 1 old globular cluster likely associated with the LMC, and extended stellar populations around the LMC out to R. similar to. 18.4 kpc. SMASH DR1 contains measurements of similar to 100 million objects distributed in 61 fields. A prototype version of the NOAO Data Lab provides data access and exploration tools.}, language = {en} } @article{AlHalbouniHolohanTaherietal.2018, author = {Al-Halbouni, Djamil and Holohan, Eoghan P. and Taheri, Abbas and Sch{\"o}pfer, Martin P. J. and Emam, Sacha and Dahm, Torsten}, title = {Geomechanical modelling of sinkhole development using distinct elements}, series = {Solid earth}, volume = {9}, journal = {Solid earth}, number = {6}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1869-9510}, doi = {10.5194/se-9-1341-2018}, pages = {1341 -- 1373}, year = {2018}, abstract = {Mechanical and/or chemical removal of material from the subsurface may generate large subsurface cavities, the destabilisation of which can lead to ground collapse and the formation of sinkholes. Numerical simulation of the interaction of cavity growth, host material deformation and overburden collapse is desirable to better understand the sinkhole hazard but is a challenging task due to the involved high strains and material discontinuities. Here, we present 2-D distinct element method numerical simulations of cavity growth and sinkhole development. Firstly, we simulate cavity formation by quasi-static, stepwise removal of material in a single growing zone of an arbitrary geometry and depth. We benchmark this approach against analytical and boundary element method models of a deep void space in a linear elastic material. Secondly, we explore the effects of properties of different uniform materials on cavity stability and sinkhole development. We perform simulated biaxial tests to calibrate macroscopic geotechnical parameters of three model materials representative of those in which sinkholes develop at the Dead Sea shoreline: mud, alluvium and salt. We show that weak materials do not support large cavities, leading to gradual sagging or suffusion-style subsidence. Strong materials support quasi-stable to stable cavities, the overburdens of which may fail suddenly in a caprock or bedrock collapse style. Thirdly, we examine the consequences of layered arrangements of weak and strong materials. We find that these are more susceptible to sinkhole collapse than uniform materials not only due to a lower integrated strength of the overburden but also due to an inhibition of stabilising stress arching. Finally, we compare our model sinkhole geometries to observations at the Ghor Al-Haditha sinkhole site in Jordan. Sinkhole depth / diameter ratios of 0.15 in mud, 0.37 in alluvium and 0.33 in salt are reproduced successfully in the calibrated model materials. The model results suggest that the observed distribution of sinkhole depth / diameter values in each material type may partly reflect sinkhole growth trends.}, language = {en} } @article{SchulzeMakuchWagnerKounavesetal.2018, author = {Schulze-Makuch, Dirk and Wagner, Dirk and Kounaves, Samuel P. and Mangelsdorf, Kai and Devine, Kevin G. and de Vera, Jean-Pierre and Schmitt-Kopplin, Philippe and Grossart, Hans-Peter and Parro, Victor and Kaupenjohann, Martin and Galy, Albert and Schneider, Beate and Airo, Alessandro and Froesler, Jan and Davila, Alfonso F. and Arens, Felix L. and Caceres, Luis and Cornejo, Francisco Solis and Carrizo, Daniel and Dartnell, Lewis and DiRuggiero, Jocelyne and Flury, Markus and Ganzert, Lars and Gessner, Mark O. and Grathwohl, Peter and Guan, Lisa and Heinz, Jacob and Hess, Matthias and Keppler, Frank and Maus, Deborah and McKay, Christopher P. and Meckenstock, Rainer U. and Montgomery, Wren and Oberlin, Elizabeth A. and Probst, Alexander J. and Saenz, Johan S. and Sattler, Tobias and Schirmack, Janosch and Sephton, Mark A. and Schloter, Michael and Uhl, Jenny and Valenzuela, Bernardita and Vestergaard, Gisle and Woermer, Lars and Zamorano, Pedro}, title = {Transitory microbial habitat in the hyperarid Atacama Desert}, series = {Proceedings of the National Academy of Sciences of the United States of America}, volume = {115}, journal = {Proceedings of the National Academy of Sciences of the United States of America}, number = {11}, publisher = {National Acad. of Sciences}, address = {Washington}, issn = {0027-8424}, doi = {10.1073/pnas.1714341115}, pages = {2670 -- 2675}, year = {2018}, language = {en} } @article{PerringBernhardtRoemermannBaetenetal.2018, author = {Perring, Michael P. and Bernhardt-Roemermann, Markus and Baeten, Lander and Midolo, Gabriele and Blondeel, Haben and Depauw, Leen and Landuyt, Dries and Maes, Sybryn L. and De Lombaerde, Emiel and Caron, Maria Mercedes and Vellend, Mark and Brunet, Joerg and Chudomelova, Marketa and Decocq, Guillaume and Diekmann, Martin and Dirnboeck, Thomas and Doerfler, Inken and Durak, Tomasz and De Frenne, Pieter and Gilliam, Frank S. and Hedl, Radim and Heinken, Thilo and Hommel, Patrick and Jaroszewicz, Bogdan and Kirby, Keith J. and Kopecky, Martin and Lenoir, Jonathan and Li, Daijiang and Malis, Frantisek and Mitchell, Fraser J. G. and Naaf, Tobias and Newman, Miles and Petrik, Petr and Reczynska, Kamila and Schmidt, Wolfgang and Standovar, Tibor and Swierkosz, Krzysztof and Van Calster, Hans and Vild, Ondrej and Wagner, Eva Rosa and Wulf, Monika and Verheyen, Kris}, title = {Global environmental change effects on plant community composition trajectories depend upon management legacies}, series = {Global change biology}, volume = {24}, journal = {Global change biology}, number = {4}, publisher = {Wiley}, address = {Hoboken}, issn = {1354-1013}, doi = {10.1111/gcb.14030}, pages = {1722 -- 1740}, year = {2018}, abstract = {The contemporary state of functional traits and species richness in plant communities depends on legacy effects of past disturbances. Whether temporal responses of community properties to current environmental changes are altered by such legacies is, however, unknown. We expect global environmental changes to interact with land-use legacies given different community trajectories initiated by prior management, and subsequent responses to altered resources and conditions. We tested this expectation for species richness and functional traits using 1814 survey-resurvey plot pairs of understorey communities from 40 European temperate forest datasets, syntheses of management transitions since the year 1800, and a trait database. We also examined how plant community indicators of resources and conditions changed in response to management legacies and environmental change. Community trajectories were clearly influenced by interactions between management legacies from over 200 years ago and environmental change. Importantly, higher rates of nitrogen deposition led to increased species richness and plant height in forests managed less intensively in 1800 (i.e., high forests), and to decreases in forests with a more intensive historical management in 1800 (i.e., coppiced forests). There was evidence that these declines in community variables in formerly coppiced forests were ameliorated by increased rates of temperature change between surveys. Responses were generally apparent regardless of sites' contemporary management classifications, although sometimes the management transition itself, rather than historic or contemporary management types, better explained understorey responses. Main effects of environmental change were rare, although higher rates of precipitation change increased plant height, accompanied by increases in fertility indicator values. Analysis of indicator values suggested the importance of directly characterising resources and conditions to better understand legacy and environmental change effects. Accounting for legacies of past disturbance can reconcile contradictory literature results and appears crucial to anticipating future responses to global environmental change.}, language = {en} } @article{VannesteValdesVerheyenetal.2018, author = {Vanneste, Thomas and Valdes, Alicia and Verheyen, Kris and Perring, Michael P. and Bernhardt-Roemermann, Markus and Andrieu, Emilie and Brunet, Jorg and Cousins, Sara A. O. and Deconchat, Marc and De Smedt, Pallieter and Diekmann, Martin and Ehrmann, Steffen and Heinken, Thilo and Hermy, Martin and Kolb, Annette and Lenoir, Jonathan and Liira, Jaan and Naaf, Tobias and Paal, Taavi and Wulf, Monika and Decocq, Guillaume and De Frenne, Pieter}, title = {Functional trait variation of forest understorey plant communities across Europe}, series = {Basic and applied ecology : Journal of the Gesellschaft f{\"u}r {\"O}kologie}, volume = {34}, journal = {Basic and applied ecology : Journal of the Gesellschaft f{\"u}r {\"O}kologie}, publisher = {Elsevier GmbH}, address = {M{\"u}nchen}, issn = {1439-1791}, doi = {10.1016/j.baae.2018.09.004}, pages = {1 -- 14}, year = {2018}, abstract = {Global environmental changes are expected to alter the functional characteristics of understorey herb-layer communities, potentially affecting forest ecosystem functioning. However, little is known about what drives the variability of functional traits in forest understories. Here, we assessed the role of different environmental drivers in shaping the functional trait distribution of understorey herbs in fragmented forests across three spatial scales. We focused on 708 small, deciduous forest patches located in 16 agricultural landscape windows, spanning a 2500-km macroclimatic gradient across the temperate forest biome in Europe. We estimated the relative effect of patch-scale, landscape-scale and macroclimatic variables on the community mean and variation of plant height, specific leaf area and seed mass. Macroclimatic variables (monthly temperature and precipitation extremes) explained the largest proportion of variation in community trait means (on average 77\% of the explained variation). In contrast, patch-scale factors dominated in explaining community trait variation (on average 68\% of the explained variation). Notably, patch age, size and internal heterogeneity had a positive effect on the community-level variability. Landscape-scale variables explained only a minor part of the variation in both trait distribution properties. The variation explained by shared combinations of the variable groups was generally negligible. These findings highlight the importance of considering multiple spatial scales in predictions of environmental-change effects on the functionality of forest understories. We propose that forest management sustainability could benefit from conserving larger, historically continuous and internally heterogeneous forest patches to maximise ecosystem service diversity in rural landscapes. (C) 2018 Gesellschaft fur Okologie. Published by Elsevier GmbH. All rights reserved.}, language = {en} } @book{GuentherPetscheFischeretal.2015, author = {G{\"u}nther, Oliver and Petsche, Hans-Joachim and Fischer, Martin H. and Franz, Norbert P. and Steup, Martin and Sixtus, Elena and Heimann, Heinz-Dieter and Pr{\"o}ve, Ralf}, title = {Raum und Zahl im Fokus der Wissenschaften}, series = {Studieren ++ : Konzepte, Perspektiven, Kompetenzen ; 1}, journal = {Studieren ++ : Konzepte, Perspektiven, Kompetenzen ; 1}, editor = {Petsche, Hans-Joachim}, publisher = {Trafo}, address = {Berlin}, isbn = {978-3-86464-082-7}, pages = {168}, year = {2015}, abstract = {Die nun begonnene Reihe „studieren++" resultiert aus einer von der Universit{\"a}t Potsdam angebotenen Vorlesungsreihe. Das Besondere an dieser Vorlesungsreihe ist der multidisziplin{\"a}re Anspruch und die konsequent umgesetzte Zusammenarbeit {\"u}ber Disziplingrenzen hinweg. Die nicht nur {\"u}ber Instituts-, sondern {\"u}ber Fakult{\"a}tsgrenzen praktizierte Interdisziplinarit{\"a}t erlaubt die Betrachtung eines Problems oder Sachverhalts aus unterschiedlichen Blickwinkeln. Wissenschaftliche Fragestellungen sind komplex und nicht immer auf eine Disziplin beschr{\"a}nkt. Sie in ihrer G{\"a}nze erfassen und nachhaltige L{\"o}sungsstrategien oder Konzepte entwickeln zu k{\"o}nnen gelingt oft nur durch eine multidisziplin{\"a}re Kooperation. Eine Lehrveranstaltung wie die vorliegende ist nicht nur f{\"u}r die Studierenden einer Universit{\"a}t eine hervorragende M{\"o}glichkeit, um {\"u}ber die Grenzen der eigenen Disziplin hinaus zu blicken und die Zusammenarbeit mit Wissenschaftlerinnen und Wissenschaftlern aus anderen Bereichen zu pflegen. So lernt man, sich in andere Sichtweisen hineinzuversetzen und sich zwischen den Disziplinen zu bewegen - eine Kompetenz, die in der hochkomplexen Arbeitswelt von heute von hohem Nutzen ist. Der vorliegende erste Band der Reihe hat „Raum und Zahl" zum Thema und ist aus einer Ringvorlesung aus dem Wintersemester 2013/2014 entstanden. Drei der f{\"u}nf Fakult{\"a}ten, insgesamt neun Institute der Universit{\"a}t Potsdam, haben sich an der Vorlesung beteiligt und sich dieses spannenden Themas angenommen. Als jemand, der sich jahrelang wissenschaftlich mit algorithmischer Geometrie sowie mit raumbezogenen Datenbanken und Navigationssystemen besch{\"a}ftigt hat, kann ich nur bekr{\"a}ftigen, dass die Bez{\"u}ge zwischen Raum und Zahl, zwischen R{\"a}umen und Zahlen, noch viel st{\"a}rker im {\"o}ffentlichen Bewusstsein verankert geh{\"o}ren. R{\"a}ume auch quantitativ zu erfassen und zu verstehen ist eine Kulturtechnik, die an Wichtigkeit eher noch zunimmt, vor allem vor dem Hintergrund, dass wir genetisch nicht allzu gut auf derartige Herausforderungen vorbereitet sind. Denn viele unserer einschl{\"a}gigen Gene entstammen noch aus der Zeit der Savanne, einer Zeit, zu der das Raumkonzept sich fast ausschließlich auf die unmittelbare r{\"a}umliche Umgebung bezog und Zahlen jenseits von 10 nur wenig Relevanz f{\"u}r das eigene {\"U}berleben hatten. Als Pr{\"a}sident der Universit{\"a}t Potsdam freut es mich ganz besonders, dass sich die hier vertretenen Wissenschaftler bereit erkl{\"a}rt haben, ihre {\"U}berlegungen mit den Studierenden und ihren Kolleginnen und Kollegen zu teilen. Herrn Kollegen Hans-Joachim Petsche m{\"o}chte ich f{\"u}r sein Engagement danken und ihm zu dieser gelungenen Reihe gratulieren. Der Geist der Wissenschaft, der nicht nur einsam im B{\"u}ro oder Labor gelebt wird, sondern gerade an einer Universit{\"a}t auch aktiv nach außen getragen werden sollte, wird hier in besonderer Weise sichtbar. Ich w{\"u}nsche Ihnen viel Freude bei der Lekt{\"u}re des Bandes und freue mich auf weitere Ver{\"o}ffentlichungen in dieser Reihe.}, subject = {Raum}, language = {de} } @article{PlueDeFrenneAcharyaetal.2013, author = {Plue, Jan and De Frenne, Pieter and Acharya, Kamal P. and Brunet, Jorg and Chabrerie, Olivier and Decocq, Guillaume and Diekmann, Martin and Graae, Bente J. and Heinken, Thilo and Hermy, Martin and Kolb, Annette and Lemke, Isgard and Liira, Jaan and Naaf, Tobias and Shevtsova, Anna and Verheyen, Kris and Wulf, Monika and Cousins, Sara A. O.}, title = {Climatic control of forest herb seed banks along a latitudinal gradient}, series = {Global ecology and biogeography : a journal of macroecology}, volume = {22}, journal = {Global ecology and biogeography : a journal of macroecology}, number = {10}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {1466-822X}, doi = {10.1111/geb.12068}, pages = {1106 -- 1117}, year = {2013}, abstract = {Aim Seed banks are central to the regeneration strategy of many plant species. Any factor altering seed bank density thus affects plant regeneration and population dynamics. Although seed banks are dynamic entities controlled by multiple environmental drivers, climatic factors are the most comprehensive, but still poorly understood. This study investigates how climatic variation structures seed production and resulting seed bank patterns. Location Temperate forests along a 1900km latitudinal gradient in north-western (NW) Europe. Methods Seed production and seed bank density were quantified in 153 plots along the gradient for four forest herbs with different seed longevity: Geum urbanum, Milium effusum, Poa nemoralis and Stachys sylvatica. We tested the importance of climatic and local environmental factors in shaping seed production and seed bank density. Results Seed production was determined by population size, and not by climatic factors. G.urbanum and M.effusum seed bank density declined with decreasing temperature (growing degree days) and/or increasing temperature range (maximum-minimum temperature). P.nemoralis and S.sylvatica seed bank density were limited by population size and not by climatic variables. Seed bank density was also influenced by other, local environmental factors such as soil pH or light availability. Different seed bank patterns emerged due to differential seed longevities. Species with long-lived seeds maintained constant seed bank densities by counteracting the reduced chance of regular years with high seed production at colder northern latitudes. Main conclusions Seed bank patterns show clear interspecific variation in response to climate across the distribution range. Not all seed banking species may be as well equipped to buffer climate change via their seed bank, notably in short-term persistent species. Since the buffering capacity of seed banks is key to species persistence, these results provide crucial information to advance climatic change predictions on range shifts, community and biodiversity responses.}, language = {en} } @article{XinLaRueObergetal.2015, author = {Xin, Hong and LaRue, Jerry and Oberg, Henrik and Beye, Martin and Turner, J. J. and Gladh, J{\"o}rgen and Ng, May L. and Sellberg, Jonas A. and Kaya, Sarp and Mercurio, G. and Hieke, F. and Nordlund, Dennis and Schlotter, William F. and Dakovski, Georgi L. and Minitti, Michael P. and F{\"o}hlisch, Alexander and Wolf, Martin and Wurth, Wilfried and Ogasawara, Hirohito and Norskov, Jens K. and Ostrom, Henrik and Pettersson, Lars G. M. and Nilsson, Anders and Abild-Pedersen, Frank}, title = {Strong Influence of Coadsorbate Interaction on CO Desorption Dynamics on Ru(0001) Probed by Ultrafast X-Ray Spectroscopy and Ab Initio Simulations}, series = {Physical review letters}, volume = {114}, journal = {Physical review letters}, number = {15}, publisher = {American Physical Society}, address = {College Park}, issn = {0031-9007}, doi = {10.1103/PhysRevLett.114.156101}, pages = {6}, year = {2015}, abstract = {We show that coadsorbed oxygen atoms have a dramatic influence on the CO desorption dynamics from Ru(0001). In contrast to the precursor-mediated desorption mechanism on Ru(0001), the presence of surface oxygen modifies the electronic structure of Ru atoms such that CO desorption occurs predominantly via the direct pathway. This phenomenon is directly observed in an ultrafast pump-probe experiment using a soft x-ray free-electron laser to monitor the dynamic evolution of the valence electronic structure of the surface species. This is supported with the potential of mean force along the CO desorption path obtained from density-functional theory calculations. Charge density distribution and frozen-orbital analysis suggest that the oxygen-induced reduction of the Pauli repulsion, and consequent increase of the dative interaction between the CO 5 sigma and the charged Ru atom, is the electronic origin of the distinct desorption dynamics. Ab initio molecular dynamics simulations of CO desorption from Ru(0001) and oxygen-coadsorbed Ru(0001) provide further insights into the surface bond-breaking process.}, language = {en} } @article{DeFrenneKolbGraaeetal.2011, author = {De Frenne, P. and Kolb, Annette and Graae, Benete Jessen and Decocq, Guillaume and Baltora, S. and De Schrijver, A. and Brunet, J. and Chabrerie, Olivier and Cousins, Sara A. O. and Dhondt, Rob and Diekmann, Martin and Gruwez, R. and Heinken, Thilo and Hermy, Martin and Liira, J. and Saguez, R. and Shevtsova, Anna and Baskin, Carol C. and Verheyen, Kris}, title = {A latitudinal gradient in seed nutrients of the forest herb Anemone nemorosa}, series = {Plant biology}, volume = {13}, journal = {Plant biology}, number = {3}, publisher = {Wiley-Blackwell}, address = {Malden}, issn = {1435-8603}, doi = {10.1111/j.1438-8677.2010.00404.x}, pages = {493 -- 501}, year = {2011}, abstract = {The nutrient concentration in seeds determines many aspects of potential success of the sexual reproductive phase of plants, including the seed predation probability, efficiency of seed dispersal and seedling performance. Despite considerable research interest in latitudinal gradients of foliar nutrients, a similar gradient for seeds remains unexplored. We investigated a potential latitudinal gradient in seed nutrient concentrations within the widespread European understorey forest herb Anemone nemorosa L. We sampled seeds of A. nemorosa in 15 populations along a 1900-km long latitudinal gradient at three to seven seed collection dates post-anthesis and investigated the relative effects of growing degree-hours > 5 degrees C, soil characteristics and latitude on seed nutrient concentrations. Seed nitrogen, nitrogen:phosphorus ratio and calcium concentration decreased towards northern latitudes, while carbon:nitrogen ratios increased. When taking differences in growing degree-hours and measured soil characteristics into account and only considering the most mature seeds, the latitudinal decline remained particularly significant for seed nitrogen concentration. We argue that the decline in seed nitrogen concentration can be attributed to northward decreasing seed provisioning due to lower soil nitrogen availability or greater investment in clonal reproduction. This pattern may have large implications for the reproductive performance of this forest herb as the degree of seed provisioning ultimately co-determines seedling survival and reproductive success.}, language = {en} } @article{LemkeKolbGraaeetal.2015, author = {Lemke, Isgard H. and Kolb, Annette and Graae, Bente J. and De Frenne, Pieter and Acharya, Kamal P. and Blandino, Cristina and Brunet, Jorg and Chabrerie, Olivier and Cousins, Sara A. O. and Decocq, Guillaume and Heinken, Thilo and Hermy, Martin and Liira, Jaan and Schmucki, Reto and Shevtsova, Anna and Verheyen, Kris and Diekmann, Martin}, title = {Patterns of phenotypic trait variation in two temperate forest herbs along a broad climatic gradient}, series = {Plant ecology : an international journal}, volume = {216}, journal = {Plant ecology : an international journal}, number = {11}, publisher = {Springer}, address = {Dordrecht}, issn = {1385-0237}, doi = {10.1007/s11258-015-0534-0}, pages = {1523 -- 1536}, year = {2015}, abstract = {Phenotypic trait variation plays a major role in the response of plants to global environmental change, particularly in species with low migration capabilities and recruitment success. However, little is known about the variation of functional traits within populations and about differences in this variation on larger spatial scales. In a first approach, we therefore related trait expression to climate and local environmental conditions, studying two temperate forest herbs, Milium effusum and Stachys sylvatica, along a similar to 1800-2500 km latitudinal gradient. Within each of 9-10 regions in six European countries, we collected data from six populations of each species and recorded several variables in each region (temperature, precipitation) and population (light availability, soil parameters). For each plant, we measured height, leaf area, specific leaf area, seed mass and the number of seeds and examined environmental effects on within-population trait variation as well as on trait means. Most importantly, trait variation differed both between and within populations. Species, however, differed in their response. Intrapopulation variation in Milium was consistently positively affected by higher mean temperatures and precipitation as well as by more fertile local soil conditions, suggesting that more productive conditions may select for larger phenotypic variation. In Stachys, particularly light availability positively influenced trait variation, whereas local soil conditions had no consistent effects. Generally, our study emphasises that intra-population variation may differ considerably across larger scales-due to phenotypic plasticity and/or underlying genetic diversity-possibly affecting species response to global environmental change.}, language = {en} } @article{AtsawawaranuntComasBruMozhdehietal.2018, author = {Atsawawaranunt, Kamolphat and Comas-Bru, Laia and Mozhdehi, Sahar Amirnezhad and Deininger, Michael and Harrison, Sandy P. and Baker, Andy and Boyd, Meighan and Kaushal, Nikita and Ahmad, Syed Masood and Brahim, Yassine Ait and Arienzo, Monica and Bajo, Petra and Braun, Kerstin and Burstyn, Yuval and Chawchai, Sakonvan and Duan, Wuhui and Hatvani, Istvan Gabor and Hu, Jun and Kern, Zoltan and Labuhn, Inga and Lachniet, Matthew and Lechleitner, Franziska A. and Lorrey, Andrew and Perez-Mejias, Carlos and Pickering, Robyn and Scroxton, Nick and Atkinson, Tim and Ayalon, Avner and Baldini, James and Bar-Matthews, Miriam and Pablo Bernal, Juan and Breitenbach, Sebastian Franz Martin and Boch, Ronny and Borsato, Andrea and Cai, Yanjun and Carolin, Stacy and Cheng, Hai and Columbu, Andrea and Couchoud, Isabelle and Cruz, Francisco and Demeny, Attila and Dominguez-Villar, David and Dragusin, Virgil and Drysdale, Russell and Ersek, Vasile and Finne, Martin and Fleitmann, Dominik and Fohlmeister, Jens Bernd and Frappier, Amy and Genty, Dominique and Holzkamper, Steffen and Hopley, Philip and Kathayat, Gayatri and Keenan-Jones, Duncan and Koltai, Gabriella and Luetscher, Marc and Li, Ting-Yong and Lone, Mahjoor Ahmad and Markowska, Monika and Mattey, Dave and McDermott, Frank and Moreno, Ana and Moseley, Gina and Nehme, Carole and Novello, Valdir F. and Psomiadis, David and Rehfeld, Kira and Ruan, Jiaoyang and Sekhon, Natasha and Sha, Lijuan and Sholz, Denis and Shopov, Yavor and Smith, Andrew and Strikis, Nicolas and Treble, Pauline and Unal-Imer, Ezgi and Vaks, Anton and Vansteenberge, Stef and Veiga-Pires, Cristina and Voarintsoa, Ny Riavo and Wang, Xianfeng and Wong, Corinne and Wortham, Barbara and Wurtzel, Jennifer and Zong, Baoyun}, title = {The SISAL database}, series = {Earth System Science Data}, volume = {10}, journal = {Earth System Science Data}, number = {3}, publisher = {Copernicus}, address = {G{\"o}ttingen}, organization = {SISAL Working Grp Members}, issn = {1866-3508}, doi = {10.5194/essd-10-1687-2018}, pages = {1687 -- 1713}, year = {2018}, abstract = {Stable isotope records from speleothems provide information on past climate changes, most particularly information that can be used to reconstruct past changes in precipitation and atmospheric circulation. These records are increasingly being used to provide "out-of-sample" evaluations of isotope-enabled climate models. SISAL (Speleothem Isotope Synthesis and Analysis) is an international working group of the Past Global Changes (PAGES) project. The working group aims to provide a comprehensive compilation of speleothem isotope records for climate reconstruction and model evaluation. The SISAL database contains data for individual speleothems, grouped by cave system. Stable isotopes of oxygen and carbon (delta O-18, delta C-13) measurements are referenced by distance from the top or bottom of the speleothem. Additional tables provide information on dating, including information on the dates used to construct the original age model and sufficient information to assess the quality of each data set and to erect a standardized chronology across different speleothems. The metadata table provides location information, information on the full range of measurements carried out on each speleothem and information on the cave system that is relevant to the interpretation of the records, as well as citations for both publications and archived data.}, language = {en} } @article{FischerHrubcovaDahmetal.2022, author = {Fischer, Tom{\´a}š and Hrubcova, Pavla and Dahm, Torsten and Woith, Heiko and Vylita, Tom{\´a}š and Ohrnberger, Matthias and Vlček, Josef and Horalek, Josef and Dedecek, Petr and Zimmer, Martin and Lipus, Martin P. and Pierdominici, Simona and Kallmeyer, Jens and Kr{\"u}ger, Frank and Hannemann, Katrin and Korn, Michael and Kaempf, Horst and Reinsch, Thomas and Klicpera, Jakub and Vollmer, Daniel and Daskalopoulou, Kyriaki}, title = {ICDP drilling of the Eger Rift observatory}, series = {Scientific drilling : reports on deep earth sampling and monitoring}, volume = {31}, journal = {Scientific drilling : reports on deep earth sampling and monitoring}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1816-8957}, doi = {10.5194/sd-31-31-2022}, pages = {31 -- 49}, year = {2022}, abstract = {The new in situ geodynamic laboratory established in the framework of the ICDP Eger project aims to develop the most modern, comprehensive, multiparameter laboratory at depth for studying earthquake swarms, crustal fluid flow, mantle-derived CO2 and helium degassing, and processes of the deep biosphere. In order to reach a new level of high-frequency, near-source and multiparameter observation of earthquake swarms and related phenomena, such a laboratory comprises a set of shallow boreholes with high-frequency 3-D seismic arrays as well as modern continuous real-time fluid monitoring at depth and the study of the deep biosphere. This laboratory is located in the western part of the Eger Rift at the border of the Czech Republic and Germany (in the West Bohemia-Vogtland geodynamic region) and comprises a set of five boreholes around the seismoactive zone. To date, all monitoring boreholes have been drilled. This includes the seismic monitoring boreholes S1, S2 and S3 in the crystalline units north and east of the major Nov{\´y} Kostel seismogenic zone, borehole F3 in the Hartoušov mofette field and borehole S4 in the newly discovered Bažina maar near Lib{\´a}. Supplementary borehole P1 is being prepared in the Neualbenreuth maar for paleoclimate and biological research. At each of these sites, a borehole broadband seismometer will be installed, and sites S1, S2 and S3 will also host a 3-D seismic array composed of a vertical geophone chain and surface seismic array. Seismic instrumenting has been completed in the S1 borehole and is in preparation in the remaining four monitoring boreholes. The continuous fluid monitoring site of Hartoušov includes three boreholes, F1, F2 and F3, and a pilot monitoring phase is underway. The laboratory also enables one to analyze microbial activity at CO2 mofettes and maar structures in the context of changes in habitats. The drillings into the maar volcanoes contribute to a better understanding of the Quaternary paleoclimate and volcanic activity.}, language = {en} } @article{FischerHrubcovaDahmetal.2022, author = {Fischer, Tomas and Hrubcova, Pavla and Dahm, Torsten and Woith, Heiko and Vylita, Tomas and Ohrnberger, Matthias and Vlcek, Josef and Horalek, Josef and Dedecek, Petr and Zimmer, Martin and Lipus, Martin P. and Pierdominici, Simona and Kallmeyer, Jens and Kr{\"u}ger, Frank and Hannemann, Katrin and Korn, Michael and K{\"a}mpf, Horst and Reinsch, Thomas and Klicpera, Jakub and Vollmer, Daniel and Daskalopoulou, Kyriaki}, title = {ICDP drilling of the Eger Rift observatory}, series = {Scientific Drilling}, volume = {31}, journal = {Scientific Drilling}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1816-8957}, doi = {10.5194/sd-31-31-2022}, pages = {31 -- 49}, year = {2022}, abstract = {The new in situ geodynamic laboratory established in the framework of the ICDP Eger project aims to develop the most modern, comprehensive, multiparameter laboratory at depth for studying earthquake swarms, crustal fluid flow, mantle-derived CO2 and helium degassing, and processes of the deep biosphere. In order to reach a new level of high-frequency, near-source and multiparameter observation of earthquake swarms and related phenomena, such a laboratory comprises a set of shallow boreholes with high-frequency 3-D seismic arrays as well as modern continuous real-time fluid monitoring at depth and the study of the deep biosphere. This laboratory is located in the western part of the Eger Rift at the border of the Czech Republic and Germany (in the West Bohemia-Vogtland geodynamic region) and comprises a set of five boreholes around the seismoactive zone. To date, all monitoring boreholes have been drilled. This includes the seismic monitoring boreholes S1, S2 and S3 in the crystalline units north and east of the major Novy Kostel seismogenic zone, borehole F3 in the Hartousov mofette field and borehole S4 in the newly discovered Bazina maar near Liba. Supplementary borehole P1 is being prepared in the Neualbenreuth maar for paleoclimate and biological research. At each of these sites, a borehole broadband seismometer will be installed, and sites S1, S2 and S3 will also host a 3-D seismic array composed of a vertical geophone chain and surface seismic array. Seismic instrumenting has been completed in the S1 borehole and is in preparation in the remaining four monitoring boreholes. The continuous fluid monitoring site of Hartousov includes three boreholes, F1, F2 and F3, and a pilot monitoring phase is underway. The laboratory also enables one to analyze microbial activity at CO2 mofettes and maar structures in the context of changes in habitats. The drillings into the maar volcanoes contribute to a better understanding of the Quaternary paleoclimate and volcanic activity.}, language = {en} } @article{PontiusKachelSchuesslerLangeheineetal.2011, author = {Pontius, N. and Kachel, T. and Sch{\"u}ssler-Langeheine, C. and Schlotter, W. F. and Beye, Martin and Sorgenfrei, Nomi and Chang, C. F. and F{\"o}hlisch, Alexander and Wurth, W. and Metcalf, P. and Leonov, I. and Yaresko, A. and Stojanovic, N. and Berglund, Martin and Guerassimova, N. and Duesterer, S. and Redlin, H. and Duerr, H. A.}, title = {Time-resolved resonant soft x-ray diffraction with free-electron lasers femtosecond dynamics across the Verwey transition in magnetite}, series = {Applied physics letters}, volume = {98}, journal = {Applied physics letters}, number = {18}, publisher = {American Institute of Physics}, address = {Melville}, issn = {0003-6951}, doi = {10.1063/1.3584855}, pages = {3}, year = {2011}, abstract = {Resonant soft x-ray diffraction (RSXD) with femtosecond (fs) time resolution is a powerful tool for disentangling the interplay between different degrees of freedom in strongly correlated electron materials. It allows addressing the coupling of particular degrees of freedom upon an external selective perturbation, e. g., by an optical or infrared laser pulse. Here, we report a time-resolved RSXD experiment from the prototypical correlated electron material magnetite using soft x-ray pulses from the free-electron laser FLASH in Hamburg. We observe ultrafast melting of the charge-orbital order leading to the formation of a transient phase, which has not been observed in equilibrium.}, language = {en} } @article{HochheimerMenonParthasarathyetal.1994, author = {Hochheimer, H. D. and Menon, V. and Parthasarathy, R. and Martin, C. R. and Bechthold, Jeff and Hor, P.-H. and Lorenz, Bernd and Spatz, J. P.}, title = {High pressure study of the temperature dependence of the conductivity of template synthesized polyaniline and polypyrrole}, year = {1994}, language = {en} } @article{HochheimerMenonParthasarathyetal.1994, author = {Hochheimer, H. D. and Menon, V. and Parthasarathy, R. and Martin, C. R. and Bechthold, Jeff and Hor, P.-H. and Lorenz, Bernd and Spatz, J. P.}, title = {High pressure conductivity of template synthesized polypyrrole}, year = {1994}, language = {en} } @article{LorenzSpatzHochheimeretal.1995, author = {Lorenz, Bernd and Spatz, J. P. and Hochheimer, H. D. and Menon, V. and Parthasarathy, R. and Martin, C. R. and Bechthold, Jeff and Hor, P.-H.}, title = {High pressure conductivity study of template synthesized polypyrrole : observation of a crossover from three to one dimensional variable range hopping}, year = {1995}, language = {en} } @article{LorenzSpatzHochheimeretal.1994, author = {Lorenz, Bernd and Spatz, J. P. and Hochheimer, H. D. and Menon, V. and Parthasarathy, R. and Martin, C. R. and Bechthold, Jeff and Hor, P.-H.}, title = {Dimensional crossover of the temperature dependence of the electrical conductivity of template synthesized polyaniline and polypyrrole}, year = {1994}, language = {en} } @article{LorenzSpatzWeishauptetal.1994, author = {Lorenz, Bernd and Spatz, J. P. and Weishaupt, K. and Hochheimer, H. D. and Menon, V. and Parthasarathy, R. and Martin, C. R. and Bechthold, Jeff and Hor, P.-H.}, title = {Observation of crossover from three to two dimensional variable range hopping in template synthesized polypyrrole and polyaniline}, year = {1994}, language = {en} } @article{MaesPerringVanhellemontetal.2018, author = {Maes, Sybryn L. and Perring, Michael P. and Vanhellemont, Margot and Depauw, Leen and Van den Bulcke, Jan and Brumelis, Guntis and Brunet, Jorg and Decocq, Guillaume and den Ouden, Jan and H{\"a}rdtle, Werner and Hedl, Radim and Heinken, Thilo and Heinrichs, Steffi and Jaroszewicz, Bogdan and Kopeck{\´y}, Martin and Malis, Frantisek and Wulf, Monika and Verheyen, Kris}, title = {Environmental drivers interactively affect individual tree growth across temperate European forests}, series = {Global change biology}, volume = {25}, journal = {Global change biology}, number = {1}, publisher = {Wiley}, address = {Hoboken}, issn = {1354-1013}, doi = {10.1111/gcb.14493}, pages = {201 -- 217}, year = {2018}, abstract = {Forecasting the growth of tree species to future environmental changes requires abetter understanding of its determinants. Tree growth is known to respond to global-change drivers such as climate change or atmospheric deposition, as well as to localland-use drivers such as forest management. Yet, large geographical scale studiesexamining interactive growth responses to multiple global-change drivers are relativelyscarce and rarely consider management effects. Here, we assessed the interactiveeffects of three global-change drivers (temperature, precipitation and nitrogen deposi-tion) on individual tree growth of three study species (Quercus robur/petraea, Fagus syl-vatica and Fraxinus excelsior). We sampled trees along spatial environmental gradientsacross Europe and accounted for the effects of management for Quercus. We collectedincrement cores from 267 trees distributed over 151 plots in 19 forest regions andcharacterized their neighbouring environment to take into account potentially confounding factors such as tree size, competition, soil conditions and elevation. Wedemonstrate that growth responds interactively to global-change drivers, with species -specific sensitivities to the combined factors. Simultaneously high levels of precipita-tion and deposition benefited Fraxinus, but negatively affected Quercus' growth, high-lighting species-specific interactive tree growth responses to combined drivers. ForFagus, a stronger growth response to higher temperatures was found when precipita-tion was also higher, illustrating the potential negative effects of drought stress underwarming for this species. Furthermore, we show that past forest management canmodulate the effects of changing temperatures on Quercus' growth; individuals in plotswith a coppicing history showed stronger growth responses to higher temperatures.Overall, our findings highlight how tree growth can be interactively determined by glo-bal-change drivers, and how these growth responses might be modulated by past for-est management. By showing future growth changes for scenarios of environmentalchange, we stress the importance of considering multiple drivers, including past man-agement and their interactions, when predicting tree growth.}, language = {en} } @article{YangZhuWolfetal.2018, author = {Yang, Jie and Zhu, Xiaolei and Wolf, Thomas J. A. and Li, Zheng and Nunes, Jo{\~a}o Pedro Figueira and Coffee, Ryan and Cryan, James P. and G{\"u}hr, Markus and Hegazy, Kareem and Heinz, Tony F. and Jobe, Keith and Li, Renkai and Shen, Xiaozhe and Veccione, Theodore and Weathersby, Stephen and Wilkin, Kyle J. and Yoneda, Charles and Zheng, Qiang and Martinez, Todd J. and Centurion, Martin and Wang, Xijie}, title = {Imaging CF3I conical intersection and photodissociation dynamics with ultrafast electron diffraction}, series = {Science}, volume = {361}, journal = {Science}, number = {6397}, publisher = {American Assoc. for the Advancement of Science}, address = {Washington}, issn = {0036-8075}, doi = {10.1126/science.aat0049}, pages = {64 -- 67}, year = {2018}, abstract = {Conical intersections play a critical role in excited-state dynamics of polyatomic molecules because they govern the reaction pathways of many nonadiabatic processes. However, ultrafast probes have lacked sufficient spatial resolution to image wave-packet trajectories through these intersections directly. Here, we present the simultaneous experimental characterization of one-photon and two-photon excitation channels in isolated CF3I molecules using ultrafast gas-phase electron diffraction. In the two-photon channel, we have mapped out the real-space trajectories of a coherent nuclear wave packet, which bifurcates onto two potential energy surfaces when passing through a conical intersection. In the one-photon channel, we have resolved excitation of both the umbrella and the breathing vibrational modes in the CF3 fragment in multiple nuclear dimensions. These findings benchmark and validate ab initio nonadiabatic dynamics calculations.}, language = {en} } @misc{AdamBovend'EerdtDoorenetal.2012, author = {Adam, Jos J. and Bovend'Eerdt, Thamar J. H. and Dooren, Fleur E. P. van and Fischer, Martin H. and Pratt, Jay}, title = {The closer the better}, series = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, number = {607}, issn = {1866-8364}, doi = {10.25932/publishup-43296}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-432963}, pages = {1533 -- 1538}, year = {2012}, abstract = {A growing literature has suggested that processing of visual information presented near the hands is facilitated. In this study, we investigated whether the near-hands superiority effect also occurs with the hands moving. In two experiments, participants performed a cyclical bimanual movement task requiring concurrent visual identification of briefly presented letters. For both the static and dynamic hand conditions, the results showed improved letter recognition performance with the hands closer to the stimuli. The finding that the encoding advantage for near-hand stimuli also occurred with the hands moving suggests that the effect is regulated in real time, in accordance with the concept of a bimodal neural system that dynamically updates hand position in external space.}, language = {en} } @article{OstermeyerKlemzKubinaetal.2005, author = {Ostermeyer, Martin and Klemz, Guido and Kubina, P. and Menzel, Ralf}, title = {Enhanced brightness and extraction efficiency of Nd:YAG rod lasers resulting in 180 W output power with M2<1.2}, isbn = {1-557-52697-4}, year = {2005}, language = {en} } @article{KubasCassanBeaulieuetal.2005, author = {Kubas, Daniel and Cassan, A. and Beaulieu, Jean-Philippe and Coutures, C. and Dominik, M. and Albrow, Michael D. and Brillant, Stephane and Caldwell, John A. R. and Dominis, Dijana and Donatowicz, J. and Fendt, Christian and Fouque, P. and Jorgensen, Uffe Grae and Greenhill, John and Hill, K. and Heinm{\"u}ller, Janine and Horne, Keith and Kane, Stephen R. and Marquette, Jean-Baptiste and Martin, Ralph and Menzies, J. W. and Pollard, K. R. and Sahu, K. C. and Vinter, C. and Wambsganss, Joachim and Watson, R. and Williams, A. and Thurl, C.}, title = {Full characterization of binary-lens event OGLE-2002-BLG-069 from PLANET observations}, issn = {0004-6361}, year = {2005}, abstract = {We analyze the photometric data obtained by PLANET and OGLE on the caustic-crossing binary-lens microlensing event OGLE-2002-BLG-069. Thanks to the excellent photometric and spectroscopic coverage of the event, we are able to constrain the lens model up to the known ambiguity between close and wide binary lenses. The detection of annual parallax in combination with measurements of extended-source effects allows us to determine the mass, distance and velocity of the lens components for the competing models. While the model involving a close binary lens leads to a Bulge- Disc lens scenario with a lens mass of M = (0.51 ± 0.15) M-\&ODOT; and distance of D-L = (2.9 ± 0.4) kpc, the wide binary lens solution requires a rather implausible binary black-hole lens ( M \&GSIM; 126 M-\&ODOT;). Furthermore we compare current state-of-the-art numerical and empirical models for the surface brightness profile of the source, a G5III Bulge giant. We find that a linear limb-darkening model for the atmosphere of the source star is consistent with the data whereas a PHOENIX atmosphere model assuming LTE and with no free parameter does not match our observations}, language = {en} } @article{HilsonAllemeerschAltmannetal.2004, author = {Hilson, Pierre and Allemeersch, Joke and Altmann, Thomas and Aubourg, Sebastien and Avon, Alexandra and Beynon, Jim and Bhalerao, Rishikesh P. and Bitton, Frederique and Caboche, Michel and Cannoot, Bernard and Chardakov, Vasil and Cognet-Holliger, Cecile and Colot, Vincent and Crowe, Mark and Darimont, Caroline and Durinck, Steffen and Eickhoff, Holger and deLongevialle, Andeol Falcon and Farmer, Edward E. and Grant, Murray and Kuiper, Martin T. R. and Lehrach, Hans and Leon, Celine and Leyva, Antonio and Lundeberg, Joakim and Lurin, Claire and Moreau, Yves}, title = {Versatile gene-specific sequence tags for arabidopsis functional genomics : transcript profiling and reserve genetics applications}, year = {2004}, abstract = {Microarray transcript profiling and RNA interference are two new technologies crucial for large-scale gene function studies in multicellular eukaryotes. Both rely on sequence-specific hybridization between complementary nucleic acid strands, inciting us to create a collection of gene-specific sequence tags (GSTs) representing at least 21,500 Arabidopsis genes and which are compatible with both approaches. The GSTs were carefully selected to ensure that each of them shared no significant similarity with any other region in the Arabidopsis genome. They were synthesized by PCR amplification from genomic DNA. Spotted microarrays fabricated from the GSTs show good dynamic range, specificity, and sensitivity in transcript profiling experiments. The GSTs have also been transferred to bacterial plasmid vectors via recombinational cloning protocols. These cloned GSTs constitute the ideal starting point for a variety of functional approaches, including reverse genetics. We have subcloned GSTs on a large scale into vectors designed for gene silencing in plant cells. We show that in planta expression of GST hairpin RNA results in the expected phenotypes in silenced Arabidopsis lines. These versatile GST resources provide novel and powerful tools for functional genomics}, language = {en} } @article{JiangDePoyGalYametal.2004, author = {Jiang, G. F. and DePoy, D. L. and Gal-Yam, A. and Gaudi, B. S. and Gould, A. and Han, C. and Lipkin, Y. and Maoz, D. and Ofek, E. O. and Park, B. G. and Pogge, R. W. and Udalski, A. and Kubiak, Marcin and Szymanski, M. K. and Szewczyk, O. and Zerbrun, K. and Wyrzykowski, L. and Soszynski, I. and Pietrzynski, G. and Albrow, Michael D. and Beaulieu, Jean-Philippe and Caldwell, John A. R. and Cassan, A. and Coutures, C. and Dominik, M. and Donatowicz, J. and Fouque, P. and Greenhill, John and Hill, K. and Horne, Keith and Jorgensen, S. F. and Jorgensen, Uffe Grae and Kane, Stephen R. and Kubas, Daniel and Martin, Ralph and Menzies, J. W. and Pollard, R. and Sahu, K. C. and Wambsganss, Joachim and Watson, R. and Williams, A.}, title = {OGLE-2003-BLG-238 : Microlensing mass estimate of an isolated star}, issn = {0004-637X}, year = {2004}, abstract = {Microlensing is the only known direct method to measure the masses of stars that lack visible companions. In terms of microlensing observables, the mass is given by M (c(2)/4G)(r) over tilde (E)theta(E) and so requires the measurement of both the angular Einstein radius theta(E) and the projected Einstein radius (r) over tilde (E). Simultaneous measurement of these two parameters is extremely rare. Here we analyze OGLE-2003-BLG-238, a spectacularly bright (I-min 10.3), high-magnification (A(max) 170) microlensing event. Pronounced finite-source effects permit a measurement of theta(E) = 650 muas. Although the timescale of the event is only t(E) 38 days, one can still obtain weak constraints on the microlens parallax: 4.4 AU < <(r)over tilde>(E) < 18 AU at the 1 \σ level. Together these two parameter measurements yield a range for the lens mass of 0.36 M-\&ODOT; < M < 1.48 M-\&ODOT;. As was the case for MACHO- LMC-5, the only other single star (apart from the Sun) whose mass has been determined from its gravitational effects, this estimate is rather crude. It does, however, demonstrate the viability of the technique. We also discuss future prospects for single-lens mass measurements}, language = {en} } @article{ThomasCarvalhoHaileetal.2017, author = {Thomas, Jessica E. and Carvalho, Gary R. and Haile, James and Martin, Michael D. and Castruita, Jose A. Samaniego and Niemann, Jonas and Sinding, Mikkel-Holger S. and Sandoval-Velasco, Marcela and Rawlence, Nicolas J. and Fuller, Errol and Fjeldsa, Jon and Hofreiter, Michael and Stewart, John R. and Gilbert, M. Thomas P. and Knapp, Michael}, title = {An ‛Aukward' tale}, series = {Genes}, volume = {8}, journal = {Genes}, number = {6}, publisher = {MDPI}, address = {Basel}, issn = {2073-4425}, doi = {10.3390/genes8060164}, pages = {164}, year = {2017}, abstract = {One hundred and seventy-three years ago, the last two Great Auks, Pinguinus impennis, ever reliably seen were killed. Their internal organs can be found in the collections of the Natural History Museum of Denmark, but the location of their skins has remained a mystery. In 1999, Great Auk expert Errol Fuller proposed a list of five potential candidate skins in museums around the world. Here we take a palaeogenomic approach to test which—if any—of Fuller's candidate skins likely belong to either of the two birds. Using mitochondrial genomes from the five candidate birds (housed in museums in Bremen, Brussels, Kiel, Los Angeles, and Oldenburg) and the organs of the last two known individuals, we partially solve the mystery that has been on Great Auk scholars' minds for generations and make new suggestions as to the whereabouts of the still-missing skin from these two birds.}, language = {en} } @article{PaalvastVerhammeStrakaetal.2018, author = {Paalvast, M. and Verhamme, A. and Straka, L. A. and Brinchmann, J. and Herenz, Edmund Christian and Carton, D. and Gunawardhana, M. L. P. and Boogaard, L. A. and Cantalupo, S. and Contini, T. and Epinat, Benoit and Inami, H. and Marino, R. A. and Maseda, M. V. and Michel-Dansac, L. and Muzahid, S. and Nanayakkara, T. and Pezzulli, Gabriele and Richard, J. and Schaye, Joop and Segers, M. C. and Urrutia, Tanya and Wendt, Martin and Wisotzki, Lutz}, title = {Properties and redshift evolution of star-forming galaxies with high [0 III]/[O II] ratios with MUSE at 0.28 < z < 0.85}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {618}, journal = {Astronomy and astrophysics : an international weekly journal}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {0004-6361}, doi = {10.1051/0004-6361/201832866}, pages = {15}, year = {2018}, abstract = {We present a study of the [O III]/[O II] ratios of star-forming galaxies drawn from Multi-Unit Spectroscopic Explorer (MUSE) data spanning a redshift range 0.28 < z < 0.85. Recently discovered Lyman continuum (LyC) emitters have extremely high oxygen line ratios: [O III]lambda 5007/[O II]lambda lambda 3726, 3729 > 4. Here we aim to understand the properties and the occurrences of galaxies with such high line ratios. Combining data from several MUSE Guaranteed Time Observing (GTO) programmes, we select a population of star-forming galaxies with bright emission lines, from which we draw 406 galaxies for our analysis based on their position in the z-dependent star formation rate (SFR) stellar mass (M*) plane. Out of this sample 15 are identified as extreme oxygen emitters based on their [O III]/[O II] ratios (3.7\%) and 104 galaxies have [O III]/[O II] > 1 (26\%). Our analysis shows no significant correlation between M*, SFR, and the distance from the SFR M, relation with [O III]/[O II]. We find a decrease in the fraction of galaxies with [O III]/[O II] > 1 with increasing M*, however, this is most likely a result of the relationship between [O III]/[O II] and metallicity, rather than between [O III]/[O II] and M. We draw a comparison sample of local analogues with < z > 0.03 from the Sloan Digital Sky Survey, and find similar incidence rates for this sample. In order to investigate the evolution in the fraction of high [O III]/[O II] emitters with redshift, we bin the sample into three redshift subsamples of equal number, but find no evidence for a dependence on redshift. Furthermore, we compare the observed line ratios with those predicted by nebular models with no LyC escape and find that most of the extreme oxygen emitters can be reproduced by low metallicity models. The remaining galaxies are likely LyC emitter candidates.}, language = {en} } @article{AshtonEugsterDietzetal.2019, author = {Ashton, Michelle P. and Eugster, Anne and Dietz, Sevina and Loebel, Doreen and Lindner, Annett and Kuehn, Denise and Taranko, Anna E. and Heschel, Babett and Gavrisan, Anita and Ziegler, Anette-Gabriele and Aringer, Martin and Bonifacio, Ezio}, title = {Association of Dendritic Cell Signatures With Autoimmune Inflammation Revealed by Single-Cell Profiling}, series = {Arthrittis \& Rheumatology}, volume = {71}, journal = {Arthrittis \& Rheumatology}, number = {5}, publisher = {Wiley}, address = {Hoboken}, issn = {2326-5191}, doi = {10.1002/art.40793}, pages = {817 -- 828}, year = {2019}, language = {en} } @article{MaesBlondeelPerringetal.2019, author = {Maes, Sybryn L. and Blondeel, Haben and Perring, Michael P. and Depauw, Leen and Brumelis, Guntis and Brunet, J{\"o}rg and Decocq, Guillaume and den Ouden, Jan and Haerdtle, Werner and Hedl, Radim and Heinken, Thilo and Heinrichs, Steffi and Jaroszewicz, Bogdan and Kirby, Keith J. and Kopecky, Martin and Malis, Frantisek and Wulf, Monika and Verheyen, Kris}, title = {Litter quality, land-use history, and nitrogen deposition effects on topsoil conditions across European temperate deciduous forests}, series = {Forest ecology and management}, volume = {433}, journal = {Forest ecology and management}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0378-1127}, doi = {10.1016/j.foreco.2018.10.056}, pages = {405 -- 418}, year = {2019}, abstract = {Topsoil conditions in temperate forests are influenced by several soil-forming factors, such as canopy composition (e.g. through litter quality), land-use history, atmospheric deposition, and the parent material. Many studies have evaluated the effects of single factors on physicochemical topsoil conditions, but few have assessed the simultaneous effects of multiple drivers. Here, we evaluate the combined effects of litter quality, land-use history (past land cover as well as past forest management), and atmospheric deposition on several physicochemical topsoil conditions of European temperate deciduous forest soils: bulk density, proportion of exchangeable base cations, carbon/nitrogen-ratio (C/N), litter mass, bio-available and total phosphorus, pH(KCI)and soil organic matter. We collected mineral soil and litter layer samples, and measured site characteristics for 190 20 x 20 m European mixed forest plots across gradients of litter quality (derived from the canopy species composition) and atmospheric deposition, and for different categories of past land cover and past forest management. We accounted for the effects of parent material on topsoil conditions by clustering our plots into three soil type groups based on texture and carbonate concentration. We found that litter quality was a stronger driver of topsoil conditions compared to land-use history or atmospheric deposition, while the soil type also affected several topsoil conditions here. Plots with higher litter quality had soils with a higher proportion of exchangeable base cations, and total phosphorus, and lower C/N-ratios and litter mass. Furthermore, the observed litter quality effects on the topsoil were independent from the regional nitrogen deposition or the soil type, although the soil type likely (co)-determined canopy composition and thus litter quality to some extent in the investigated plots. Litter quality effects on topsoil phosphorus concentrations did interact with past land cover, highlighting the need to consider land-use history when evaluating canopy effects on soil conditions. We conclude that forest managers can use the canopy composition as an important tool for influencing topsoil conditions, although soil type remains an important factor to consider.}, language = {en} } @misc{TsukamotoHeabelValencaetal.2008, author = {Tsukamoto, Junko and Heabel, Sophie and Valenca, Gustavo P. and Peter, Martin and Franco, Telma}, title = {Enzymatic direct synthesis of acrylic acid esters of mono- and disaccharides}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-42652}, year = {2008}, abstract = {BACKGROUND: There is an increased need to replace materials derived from fossil sources by renewables. Sugar-cane derived carbohydrates are very abundant in Brazil and are the cheapest sugars available in the market, with more than 400 million tons of sugarcane processed in the year 2007. The objective of this work was to study the preparation of sugar acrylates from free sugars and free acrylic acid, thus avoiding the previous preparation of protected sugar derivatives, such as glycosides, or activated acrylates, such as vinyl acrylate. RESULTS: Lipase catalyzed esterification of three mono- and two disaccharides with acrylic acid, in the presence or absence of molecular sieves was investigated. The reactions were monitored by high-performance liquid chromatography (HPLC) and the products were analyzed by matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry. The main products are mono- and diacrylates, while higher esters are formed as minor products. The highest conversion to sugar acrylates was observed for the D-glucose and D-fructose, followed by D-xylose and D-maltose. Molecular sieves had no pronounced effect on the conversion CONCLUSIONS: A feasible method is described to produce and to characterize sugar acrylates, including those containing more than two acrylate groups. The process for production of these higher esters could potentially be optimized further to produce molecules for cross-linking in acrylate polymerization and other applications. The direct enzymatic esterification of free carbohydrates with acrylic acid is unprecedented.}, language = {en} } @article{YuKoflerHaeusleretal.2001, author = {Yu, Tien-Shin and Kofler, Heike and H{\"a}usler, Rainer E. and Hille, Diana and Fl{\"u}gge, Ulf-Ingo and Zeeman, Samuel C. and Smith, Alison M. and Kossmann, Jens and Lloyd, James R. and Ritte, Gerhard and Steup, Martin and Lue, Wei-Ling and Chen, Jychian and Weber, Andreas P. M.}, title = {The Arabidopsis sex1 mutant is defective in the R1 protein, a general regulator of starch degradation in plants, and not in the chloroplast hexose transporter}, issn = {1040-4651}, year = {2001}, language = {en} } @article{YanJosefHuangetal.2019, author = {Yan, Runyu and Josef, Elinor and Huang, Haijian and Leus, Karen and Niederberger, Markus and Hofmann, Jan P. and Walczak, Ralf and Antonietti, Markus and Oschatz, Martin}, title = {Understanding the charge storage mechanism to achieve high capacity and fast ion storage in sodium-ion capacitor anodes by using electrospun nitrogen-doped carbon fibers}, series = {Advanced functional materials}, volume = {29}, journal = {Advanced functional materials}, number = {26}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {1616-301X}, doi = {10.1002/adfm.201902858}, pages = {13}, year = {2019}, abstract = {Microporous nitrogen-rich carbon fibers (HAT-CNFs) are produced by electrospinning a mixture of hexaazatriphenylene-hexacarbonitrile (HAT-CN) and polyvinylpyrrolidone and subsequent thermal condensation. Bonding motives, electronic structure, content of nitrogen heteroatoms, porosity, and degree of carbon stacking can be controlled by the condensation temperature due to the use of the HAT-CN with predefined nitrogen binding motives. The HAT-CNFs show remarkable reversible capacities (395 mAh g(-1) at 0.1 A g(-1)) and rate capabilities (106 mAh g(-1) at 10 A g(-1)) as an anode material for sodium storage, resulting from the abundant heteroatoms, enhanced electrical conductivity, and rapid charge carrier transport in the nanoporous structure of the 1D fibers. HAT-CNFs also serve as a series of model compounds for the investigation of the contribution of sodium storage by intercalation and reversible binding on nitrogen sites at different rates. There is an increasing contribution of intercalation to the charge storage with increasing condensation temperature which becomes less active at high rates. A hybrid sodium-ion capacitor full cell combining HAT-CNF as the anode and salt-templated porous carbon as the cathode provides remarkable performance in the voltage range of 0.5-4.0 V (95 Wh kg(-1) at 0.19 kW kg(-1) and 18 Wh kg(-1) at 13 kW kg(-1)).}, language = {en} } @article{YoukHofmannBadamdorjetal.2020, author = {Youk, Sol and Hofmann, Jan P. and Badamdorj, Bolortuya and Volkel, Antje and Antonietti, Markus and Oschatz, Martin}, title = {Controlling pore size and pore functionality in sp(2)-conjugated microporous materials by precursor chemistry and salt templating}, series = {Journal of materials chemistry : A, Materials for energy and sustainability}, volume = {8}, journal = {Journal of materials chemistry : A, Materials for energy and sustainability}, number = {41}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {2050-7488}, doi = {10.1039/d0ta05856d}, pages = {21680 -- 21689}, year = {2020}, abstract = {The synthesis of sp(2)-conjugated, heteroatom-rich, "carbonaceous" materials from economically feasible raw materials and salt templates is reported. Low cost citrazinic acid (2,6-dihydroxy-4-pyridinecarboxylic acid) and melamine are used as components to form a microporous, amorphous framework, where edges of the covalent frameworks are tightly terminated with nitrogen and oxygen moieties. ZnCl2 as the porogen stabilizes structural microporosity as well as nitrogen and oxygen heteroatoms up to comparably high condensation temperatures of 750 and 950 degrees C. The specific surface area up to 1265 m(2) g(-1) is mainly caused by micropores and typical of heteroatom-rich carbon materials with such structural porosity. The unusually high heteroatom content reveals that the edges and pores of the covalent structures are tightly lined with heteroatoms, while C-C or C-H bonds are expected to have a minor contribution as compared to typical carbon materials without or with minor content of heteroatoms. Adsorption of water vapor and carbon dioxide are exemplarily chosen to illustrate the impact of this heteroatom functionalization under salt-templating conditions on the adsorption properties of the materials. 27.10 mmol g(-1) of H2O uptake (at p/p(0) = 0.9) can be achieved, which also proves the very hydrophilic character of the pore walls, while the maximum CO2 uptake (at 273 K) is 5.3 mmol g(-1). At the same time the CO2/N-2 adsorption selectivity at 273 K can reach values of up to 60. All these values are beyond those of ordinary high surface area carbons, also differ from those of N-doped carbons, and are much closer to those of organized framework species, such as C2N.}, language = {en} } @article{vonSeckendorffTimmermanKrameretal.2004, author = {von Seckendorff, V. and Timmerman, Martin Jan and Kramer, W. and Wrobel, P.}, title = {New 40Ar/39Ar ages and geochemistry of late Carboniferous to early Permian lamprophyres and related volcanic rocks in the Saxothuringian Zone of the Variscan Orogen (Germany)}, year = {2004}, language = {en} } @article{DalyBalaganskyTimmermanetal.2001, author = {Daly, J. S. and Balagansky, V. V. and Timmerman, Martin Jan and Whitehouse, M. J. and de Jong, K. and Guise, P. and Bogdanova, S. and Gorbatschev, R. and Bridgwater, D.}, title = {Ion microprobe U-Pb zircon geochronology and isotopic evidence for a trans-crustal suture in the Lapland-Kola Orogen, northern Fennoscandian Shield}, year = {2001}, language = {en} } @article{ErdmannKupschMuelleretal.2019, author = {Erdmann, Maren and Kupsch, Andreas and M{\"u}ller, Bernd Randolf and Hentschel, Manfred P. and Niebergall, Ute and B{\"o}hning, Martin and Bruno, Giovanni}, title = {Diesel-induced transparency of plastically deformed high-density polyethylene}, series = {Journal of materials science}, volume = {54}, journal = {Journal of materials science}, number = {17}, publisher = {Springer}, address = {New York}, issn = {0022-2461}, doi = {10.1007/s10853-019-03700-8}, pages = {11739 -- 11755}, year = {2019}, abstract = {High-density polyethylene becomes optically transparent during tensile drawing when previously saturated with diesel fuel. This unusual phenomenon is investigated as it might allow conclusions with respect to the material behavior. Microscopy, differential scanning calorimetry, density measurements are applied together with two scanning X-ray scattering techniques: wide angle X-ray scattering (WAXS) and X-ray refraction, able to extract the spatially resolved crystal orientation and internal surface, respectively. The sorbed diesel softens the material and significantly alters the yielding characteristics. Although the crystallinity among stretched regions is similar, a virgin reference sample exhibits strain whitening during stretching, while the diesel-saturated sample becomes transparent. The WAXS results reveal a pronounced fiber texture in the tensile direction in the stretched region and an isotropic orientation in the unstretched region. This texture implies the formation of fibrils in the stretched region, while spherulites remain intact in the unstretched parts of the specimens. X-ray refraction reveals a preferred orientation of internal surfaces along the tensile direction in the stretched region of virgin samples, while the sample stretched in the diesel-saturated state shows no internal surfaces at all. Besides from stretching saturated samples, optical transparency is also obtained from sorbing samples in diesel after stretching.}, language = {en} } @article{AlbusGardinerIlluminatietal.2002, author = {Albus, Alexander P. and Gardiner, Simon A. and Illuminati, Fabrizio and Wilkens, Martin}, title = {Quantum field theory of dilute homogeneous Bose-Fermi-mixtures at zero temperature : general formalismand beyond mean-field corrections}, year = {2002}, abstract = {We consider a dilute homogeneous mixture of bosons and spin-polarized fermions at zero temperature. We first construct the formal scheme for carrying out systematic perturbation theory in terms of single particle Green's functions. We introduce a new relevant object, the renormalized boson-fermion T-matrix which we determine to second order in the boson-fermion s-wave scattering length. We also discuss how to incorporate the usual boson-boson T-matrix in mean-field approximation to obtain the total ground state properties of the system. The next order term beyond mean- field stems from the boson-fermion interaction and is proportional to \$a_{scriptsize BF}k_{scriptsize F}\$. The total ground-state energy-density reads \$E/V =epsilon_{scriptsize F} + epsilon_{scriptsize B} + (2pihbar^{2}a_{ m BF}n_{scriptsize B}n_{scriptsize F}/m) [1 + a_{scriptsize BF}k_{scriptsize F}f(delta)/pi]\$. The first term is the kinetic energy of the free fermions, the second term is the boson-boson mean-field interaction, the pre-factor to the additional term is the usual mean-field contribution to the boson-fermion interaction energy, and the second term in the square brackets is the second-order correction, where \$f(delta)\$ is a known function of \$delta= (m_{scriptsize B} - m_{scriptsize F})/(m_{scriptsize B} + m_{scriptsize F})\$. We discuss the relevance of this new term, how it can be incorporated into existing theories of boson-fermion mixtures, and its importance in various parameter regimes, in particular considering mixtures of \$^{6}\$Li and \$^{7}\$Li and of \$^{3}\$He and \$^{4}\$He.}, language = {en} } @article{AlbusIlluminatiWilkens2003, author = {Albus, Alexander P. and Illuminati, Fabrizio and Wilkens, Martin}, title = {Ground-state properties of trapped Bose-Fermi mixtures: Role of exchange correlation}, year = {2003}, language = {en} } @article{OehbergSurkovTittonenetal.1997, author = {{\"O}hberg, P. and Surkov, E. L. and Tittonen, I. and Stenholm, Stig and Wilkens, Martin and Shlyapnikov, G. V.}, title = {Low-energy elementary excitations of a trapped Bose-condensed gas}, year = {1997}, abstract = {We develop a method of finding analytical sotutions of the Bogolyubov-de Gennes equations for the excitations of a Bose condensate in the Thomas-Fermi regime in harmonic traps of any asymmetry and introduce a classification of eigenstates. In the case of cylindrical symmetry we emphasize the presence of an accidental degeneracy in the excitation spectrum at certain values of the projection of orbital angular momentum on the symmetry axis and discuss possible consequences of the degeneracy in the context of new signatures of Bose- Einstein condensation}, language = {en} } @article{EisertFelbingerPapadopolousetal.2000, author = {Eisert, Jens and Felbinger, Timo and Papadopolous, P. and Plenio, M. B. and Wilkens, Martin}, title = {Classical information and distillable entanglement}, year = {2000}, abstract = {We establish a quantitative connection between the amount of lost classical information about a quantum state and the concomitant loss of entanglement. Using menthods that have been developed for the optimal purification of miced states, we find a class of miced states with known distillable entanglement. These results can be used to determine the quantum capacity of a quantum channel which randomizes the order of transmitted signals.}, language = {en} } @article{PietzFaetkenheuerBurgardetal.1997, author = {Pietz, J. and F{\"a}tkenheuer, Brigitte and Burgard, P. and Armbruster, M. and Esser, G{\"u}nter and Schmidt, Martin H.}, title = {Psychiatric disorders in adult patients with early-treated phenylketonuria}, year = {1997}, language = {en} } @article{LeyPeter1996, author = {Ley, J. P. and Peter, Martin G.}, title = {Synthesis of L-histidine and (-)-spinacine chitooligosyl amides}, year = {1996}, language = {en} } @article{LeyPeter1994, author = {Ley, J. P. and Peter, Martin G.}, title = {Synthesis of N-(2-Acetamido-2-deoxy-ß-D-glucopyranosyl)- and of N-(N,N-Diacetylchitobiosyl)-amide of lhistidine}, issn = {0039-7881}, year = {1994}, language = {en} } @article{VossBolhuisFeweretal.2013, author = {Voss, Bj{\"o}rn and Bolhuis, Henk and Fewer, David P. and Kopf, Matthias and M{\"o}ke, Fred and Haas, Fabian and El-Shehawy, Rehab and Hayes, Paul and Bergman, Birgitta and Sivonen, Kaarina and Dittmann-Th{\"u}nemann, Elke and Scanlan, Dave J. and Hagemann, Martin and Stal, Lucas J. and Hess, Wolfgang R.}, title = {Insights into the physiology and ecology of the brackish-water-adapted cyanobacterium nodularia spumigena CCY9414 based on a genome-transcriptome analysis}, series = {PLoS one}, volume = {8}, journal = {PLoS one}, number = {3}, publisher = {PLoS}, address = {San Fransisco}, issn = {1932-6203}, doi = {10.1371/journal.pone.0060224}, pages = {22}, year = {2013}, abstract = {Nodularia spumigena is a filamentous diazotrophic cyanobacterium that dominates the annual late summer cyanobacterial blooms in the Baltic Sea. But N. spumigena also is common in brackish water bodies worldwide, suggesting special adaptation allowing it to thrive at moderate salinities. A draft genome analysis of N. spumigena sp. CCY9414 yielded a single scaffold of 5,462,271 nucleotides in length on which genes for 5,294 proteins were annotated. A subsequent strand-specific transcriptome analysis identified more than 6,000 putative transcriptional start sites (TSS). Orphan TSSs located in intergenic regions led us to predict 764 non-coding RNAs, among them 70 copies of a possible retrotransposon and several potential RNA regulators, some of which are also present in other N2-fixing cyanobacteria. Approximately 4\% of the total coding capacity is devoted to the production of secondary metabolites, among them the potent hepatotoxin nodularin, the linear spumigin and the cyclic nodulapeptin. The transcriptional complexity associated with genes involved in nitrogen fixation and heterocyst differentiation is considerably smaller compared to other Nostocales. In contrast, sophisticated systems exist for the uptake and assimilation of iron and phosphorus compounds, for the synthesis of compatible solutes, and for the formation of gas vesicles, required for the active control of buoyancy. Hence, the annotation and interpretation of this sequence provides a vast array of clues into the genomic underpinnings of the physiology of this cyanobacterium and indicates in particular a competitive edge of N. spumigena in nutrient-limited brackish water ecosystems.}, language = {en} } @article{EsserDinterJoergSchmidtetal.1996, author = {Esser, G{\"u}nter and Dinter-J{\"o}rg, Monika and Schmidt, Martin H. and Herrle, Johannes and Yantorno-Villalba, P. and Rose, Frauke and Laucht, Manfred}, title = {Bedeutung der Blickvermeidung im S{\"a}uglingsalter f{\"u}r den Entwicklungsstand des Kindes mit zwei und viereinhalb Jahren}, year = {1996}, language = {de} } @article{GulbinsPalmadaReicheletal.2013, author = {Gulbins, Erich and Palmada, Monica and Reichel, Martin and Lueth, Anja and Boehmer, Christoph and Amato, Davide and Mueller, Christian P. and Tischbirek, Carsten H. and Groemer, Teja W. and Tabatabai, Ghazaleh and Becker, Katrin Anne and Tripal, Philipp and Staedtler, Sven and Ackermann, Teresa F. and van Brederode, Johannes and Alzheimer, Christian and Weller, Michael and Lang, Undine E. and Kleuser, Burkhard and Grassme, Heike and Kornhuber, Johannes}, title = {Acid sphingomyelinase-ceramide system mediates effects of antidepressant drugs}, series = {Nature medicine}, volume = {19}, journal = {Nature medicine}, number = {7}, publisher = {Nature Publ. Group}, address = {New York}, issn = {1078-8956}, doi = {10.1038/nm.3214}, pages = {934 -- +}, year = {2013}, abstract = {Major depression is a highly prevalent severe mood disorder that is treated with antidepressants. The molecular targets of antidepressants require definition. We investigated the role of the acid sphingomyelinase (Asm)-ceramide system as a target for antidepressants. Therapeutic concentrations of the antidepressants amitriptyline and fluoxetine reduced Asm activity and ceramide concentrations in the hippocampus, increased neuronal proliferation, maturation and survival and improved behavior in mouse models of stress-induced depression. Genetic Asm deficiency abrogated these effects. Mice overexpressing Asm, heterozygous for acid ceramidase, treated with blockers of ceramide metabolism or directly injected with C16 ceramide in the hippocampus had higher ceramide concentrations and lower rates of neuronal proliferation, maturation and survival compared with controls and showed depression-like behavior even in the absence of stress. The decrease of ceramide abundance achieved by antidepressant-mediated inhibition of Asm normalized these effects. Lowering ceramide abundance may thus be a central goal for the future development of antidepressants.}, language = {en} } @article{LeySchweikartPeter1997, author = {Ley, J. P. and Schweikart, F. and Peter, Martin G.}, title = {Chitinase inhibitors}, year = {1997}, language = {en} } @article{KnochenhauerReicheBarberkaetal.1995, author = {Knochenhauer, Gerald and Reiche, J{\"u}rgen and Barberka, Thomas Andreas and Woolley, Martin and Tredgold, Richard H. and Hodge, P. and Brehmer, Ludwig}, title = {Do perfluorianted chains always have to be twisted?}, year = {1995}, abstract = {Short perfluorinated cabon chains do not take on helical structure when they are closely packed}, language = {en} } @article{FritzLoksteinHackenbergetal.2007, author = {Fritz, Markus and Lokstein, Heiko and Hackenberg, Dieter and Welti, Ruth and Roth, Mary and Z{\"a}hringer, Ulrich and Fulda, Martin and Hellmeyer, Wiebke and Ott, Claudia and Wolter, Frank P. and Heinz, Ernst}, title = {Channeling of eukaryotic diacylglycerol into the biosynthesis of plastidial phosphatidylglycerol}, issn = {0021-9258}, doi = {10.1074/jbc.M606295200}, year = {2007}, abstract = {Plastidial glycolipids contain diacylglycerol (DAG) moieties, which are either synthesized in the plastids (prokaryotic lipids) or originate in the extraplastidial compartment (eukaryotic lipids) necessitating their transfer into plastids. In contrast, the only phospholipid in plastids, phosphatidylglycerol (PG), contains exclusively prokaryotic DAG backbones. PG contributes in several ways to the functions of chloroplasts, but it is not known to what extent its prokaryotic nature is required to fulfill these tasks. As a first step toward answering this question, we produced transgenic tobacco plants that contain eukaryotic PG in thylakoids. This was achieved by targeting a bacterial DAG kinase into chloroplasts in which the heterologous enzyme was also incorporated into the envelope fraction. From lipid analysis we conclude that the DAG kinase phosphorylated eukaryotic DAG forming phosphatidic acid, which was converted into PG. This resulted in PG with 2-3 times more eukaryotic than prokaryotic DAG backbones. In the newly formed PG the unique Delta 3-trans-double bond, normally confined to 3-transhexadecenoic acid, was also found in sn-2- bound cis-unsaturated C18 fatty acids. In addition, a lipidomics technique allowed the characterization of phosphatidic acid, which is assumed to be derived from eukaryotic DAG precursors in the chloroplasts of the transgenic plants. The differences in lipid composition had only minor effects on measured functions of the photosynthetic apparatus, whereas the most obvious phenotype was a significant reduction in growth.}, language = {en} } @article{GonzalesDiazKasperRainer1998, author = {Gonz{\´a}les-Diaz, P. F. and Kasper, Uwe and Rainer, Martin}, title = {2-Dimensional dilatonic gravity from multidimensional Einstein gravity}, year = {1998}, language = {en} } @book{GonzalesDiazKasperRainer1997, author = {Gonz{\´a}les-Diaz, P. F. and Kasper, Uwe and Rainer, Martin}, title = {2-Dimensional dilatonic gravity from multidimensional Einstein gravity}, series = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Mathematik}, volume = {1997, 22}, journal = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Mathematik}, publisher = {Univ.}, address = {Potsdam}, pages = {14 Bl.}, year = {1997}, language = {en} } @article{PeterLeyPetersenetal.1994, author = {Peter, Martin G. and Ley, J. P. and Petersen, Stefan and Londershausen, M. and Schumacher-Wandersleb, Michael H. M. G. and Spindler, Klaus-Dieter and Spindler-Barth, Margarethe and Turberg, Andreas}, title = {Synthesis of chitinase inhibitors}, year = {1994}, language = {en} } @article{LimFriemelMarumetal.2013, author = {Lim, Sze Chern and Friemel, Martin and Marum, Justine E. and Tucker, Elena J. and Bruno, Damien L. and Riley, Lisa G. and Christodoulou, John and Kirk, Edwin P. and Boneh, Avihu and DeGennaro, Christine M. and Springer, Michael and Mootha, Vamsi K. and Rouault, Tracey A. and Leimk{\"u}hler, Silke and Thorburn, David R. and Compton, Alison G.}, title = {Mutations in LYRM4, encoding ironsulfur cluster biogenesis factor ISD11, cause deficiency of multiple respiratory chain complexes}, series = {Human molecular genetics}, volume = {22}, journal = {Human molecular genetics}, number = {22}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {0964-6906}, doi = {10.1093/hmg/ddt295}, pages = {4460 -- 4473}, year = {2013}, abstract = {Ironsulfur clusters (ISCs) are important prosthetic groups that define the functions of many proteins. Proteins with ISCs (called ironsulfur or FeS proteins) are present in mitochondria, the cytosol, the endoplasmic reticulum and the nucleus. They participate in various biological pathways including oxidative phosphorylation (OXPHOS), the citric acid cycle, iron homeostasis, heme biosynthesis and DNA repair. Here, we report a homozygous mutation in LYRM4 in two patients with combined OXPHOS deficiency. LYRM4 encodes the ISD11 protein, which forms a complex with, and stabilizes, the sulfur donor NFS1. The homozygous mutation (c.203GT, p.R68L) was identified via massively parallel sequencing of 1000 mitochondrial genes (MitoExome sequencing) in a patient with deficiency of complexes I, II and III in muscle and liver. These three complexes contain ISCs. Sanger sequencing identified the same mutation in his similarly affected cousin, who had a more severe phenotype and died while a neonate. Complex IV was also deficient in her skeletal muscle. Several other FeS proteins were also affected in both patients, including the aconitases and ferrochelatase. Mutant ISD11 only partially complemented for an ISD11 deletion in yeast. Our in vitro studies showed that the l-cysteine desulfurase activity of NFS1 was barely present when co-expressed with mutant ISD11. Our findings are consistent with a defect in the early step of ISC assembly affecting a broad variety of FeS proteins. The differences in biochemical and clinical features between the two patients may relate to limited availability of cysteine in the newborn period and suggest a potential approach to therapy.}, language = {en} } @article{EstherGroeneveldEnrightetal.2008, author = {Esther, Alexandra and Groeneveld, J{\"u}rgen and Enright, Neal J. and Miller, Ben P. and Lamont, Byron B. and Perry, George L. W. and Schurr, Frank Martin and Jeltsch, Florian}, title = {Assessing the importance of seed immigration on coexistence of plant functional types in a species-rich ecosystem}, issn = {0304-3800}, doi = {10.1016/j.ecolmodel.2008.01.014}, year = {2008}, abstract = {Modelling and empirical studies have shown that input from the regional seed pool is essential to maintain local species diversity. However, most of these studies have concentrated on simplified, if not neutral, model systems, and focus on a limited subset of species or on aggregated measures of diversity only (e.g., species richness or Shannon diversity). Thus they ignore more complex species interactions and important differences between species. To gain a better understanding of how seed immigration affects community structure at the local scale in real communities we conducted computer simulation experiments based on plant functional types (PFTs) for a species-rich, fire-prone Mediterranean-type shrubland in Western Australia. We developed a spatially explicit simulation model to explore the community dynamics of 38 PFTs, defined by seven traits - regeneration mode, seed production, seed size, maximum crown diameter, drought tolerance, dispersal mode and seed bank type - representing 78 woody species. Model parameterisation is based on published and unpublished data on the population dynamics of shrub species collected over 18 years. Simulation experiments are based on two contrasting seed immigration scenarios: (1) the 'equal seed input number' scenario, where the number of immigrant seeds is the same for all PFTs, and (2) the 'equal seed input mass' scenario, where the cumulative mass of migrating seeds is the same for all PFTs. Both scenarios were systematically tested and compared for different overall seed input values. Without immigration the local community drifts towards a state with only 13 coexisting PFTs. With increasing immigration rates in terms of overall mass of seeds the simulated number of coexisting PFTs and Shannon diversity quickly approaches values observed in the field. The equal seed mass scenario resulted in a more diverse community than did the seed number scenario. The model successfully approximates the frequency distributions (relative densities) of all individual plant traits except seed size for scenarios associated with equal seed input mass and high immigration rate. However, no scenario satisfactorily approximated the frequency distribution for all traits in combination. Our results show that regional seed input can explain the more aggregated measures of local community structure, and some, but not all, aspects of community composition. This points to the possible importance of other (untested) processes and traits (e.g., dispersal vectors) operating at the local scale. Our modelling framework can readily allow new factors to be systematically investigated, which is a major advantage compared to previous simulation studies, as it allows us to find structurally realistic models, which can address questions pertinent to ecological theory and to conservation management.}, language = {en} } @article{TsukamotoHaebelValencaetal.2008, author = {Tsukamoto, Junko and Haebel, Sophie and Valenca, Gustavo P. and Peter, Martin G. and FRanco, Telma T.}, title = {Enzymatic direct synthesis of acrylic acid esters of mono- and disaccharides}, issn = {0268-2575}, year = {2008}, abstract = {Background: There is an increased need to replace materials derived from fossil sources by renewables. Sugar- cane derived carbohydrates are very abundant in Brazil and are the cheapest sugars available in the market, with more than 400 million tons of sugarcane processed in the year 2007. The objective of this work was to study the prepn. of sugar acrylates from free sugars and free acrylic acid, thus avoiding the previous prepn. of protected sugar derivs., such as glycosides, or activated acrylates, such as vinyl acrylate. Results: Lipase catalyzed esterification of three mono- and two disaccharides with acrylic acid, in the presence or absence of mol. sieves was investigated. The reactions were monitored by high-performance liq. chromatog. (HPLC) and the products were analyzed by matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry. The main products are mono- and diacrylates, while higher esters are formed as minor products. The highest conversion to sugar acrylates was obsd. for the D-glucose and D- fructose, followed by D-xylose and D-maltose. Mol. sieves had no pronounced effect on the conversion. Conclusions: A feasible method is described to produce and to characterize sugar acrylates, including those contg. more than two acrylate groups. The process for prodn. of these higher esters could potentially be optimized further to produce mols. for crosslinking in acrylate polymn. and other applications. The direct enzymic esterification of free carbohydrates with acrylic acid is unprecedented. [on SciFinder (R)].}, language = {en} } @article{MiedemaBeyeKoenneckeetal.2014, author = {Miedema, P. S. and Beye, Martin and Koennecke, R. and Schiwietz, G. and F{\"o}hlisch, Alexander}, title = {The angular- and crystal-momentum transfer through electron-phonon coupling in silicon and silicon-carbide: similarities and differences}, series = {New journal of physics : the open-access journal for physics}, volume = {16}, journal = {New journal of physics : the open-access journal for physics}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {1367-2630}, doi = {10.1088/1367-2630/16/9/093056}, pages = {17}, year = {2014}, abstract = {Electron-phonon scattering has been studied for silicon carbide (6H-SiC) with resonant inelastic x-ray scattering at the silicon 2p edge. The observed electron-phonon scattering yields a crystal momentum transfer rate per average phonon in 6H-SiC of 1.8 fs(-1) while it is 0.2 fs(-1) in crystalline silicon. The angular momentum transfer rate per average phonon for 6H-SiC is 0.1 fs(-1), which is much higher than 0.0035 fs(-1) obtained for crystalline silicon in a previous study. The higher electron-phonon scattering rates in 6H-SiC are a result of the larger electron localization at the silicon atoms in 6H-SiC as compared to crystalline silicon. While delocalized valence electrons can screen effectively (part of) the electron-phonon interaction, this effect is suppressed for 6H-SiC in comparison to crystalline silicon. Smaller contributions to the difference in electron-phonon scattering rates between 6H-SiC and silicon arise from the lower atomic mass of carbon versus silicon and the difference in local symmetry.}, language = {en} } @article{PereiraNascimentoMagalhaesetal.2014, author = {Pereira, Fernanda S. and Nascimento, Heliara D. L. and Magalhaes, Alvicler and Peter, Martin G. and Bataglion, Giovana Anceski and Eberlin, Marcos N. and Gonzalez, Eduardo R. P.}, title = {ESI(+)-MS and GC-MS study of the hydrolysis of N-azobenzyl derivatives of chitosan}, series = {Molecules}, volume = {19}, journal = {Molecules}, number = {11}, publisher = {MDPI}, address = {Basel}, issn = {1420-3049}, doi = {10.3390/molecules191117604}, pages = {17604 -- 17618}, year = {2014}, abstract = {New N-p-chloro-, N-p-bromo-, and N-p-nitrophenylazobenzylchitosan derivatives, as well as the corresponding azophenyl and azophenyl-p-sulfonic acids, were synthesized by coupling N-benzylvchitosan with aryl diazonium salts. The synthesized molecules were analyzed by UV-Vis, FT-IR, H-1-NMR and N-15-NMR spectroscopy. The capacity of copper chelation by these materials was studied by AAS. Chitosan and the derivatives were subjected to hydrolysis and the products were analyzed by ESI(+)-MS and GC-MS, confirming the formation of N-benzyl chitosan. Furthermore, the MS results indicate that a nucleophilic aromatic substitution (SnAr) reaction occurs under hydrolysis conditions, yielding chloroaniline from N-p-bromo-, and N-p-nitrophenylazo-benzylchitosan as well as bromoaniline from N-p-chloro-, and N-p-nitrophenylazobenzyl-chitosan.}, language = {en} } @article{AdamBovend'EerdtvanDoorenetal.2012, author = {Adam, Jos J. and Bovend'Eerdt, Thamar J. H. and van Dooren, Fleur E. P. and Fischer, Martin H. and Pratt, Jay}, title = {The closer the better hand proximity dynamically affects letter recognition accuracy}, series = {Attention, perception, \& psychophysics : AP\&P ; a journal of the Psychonomic Society, Inc.}, volume = {74}, journal = {Attention, perception, \& psychophysics : AP\&P ; a journal of the Psychonomic Society, Inc.}, number = {7}, publisher = {Springer}, address = {New York}, issn = {1943-3921}, doi = {10.3758/s13414-012-0339-3}, pages = {1533 -- 1538}, year = {2012}, abstract = {A growing literature has suggested that processing of visual information presented near the hands is facilitated. In this study, we investigated whether the near-hands superiority effect also occurs with the hands moving. In two experiments, participants performed a cyclical bimanual movement task requiring concurrent visual identification of briefly presented letters. For both the static and dynamic hand conditions, the results showed improved letter recognition performance with the hands closer to the stimuli. The finding that the encoding advantage for near-hand stimuli also occurred with the hands moving suggests that the effect is regulated in real time, in accordance with the concept of a bimodal neural system that dynamically updates hand position in external space.}, language = {en} } @article{TeriacaAndrettaAuchereetal.2012, author = {Teriaca, Luca and Andretta, Vincenzo and Auchere, Frederic and Brown, Charles M. and Buchlin, Eric and Cauzzi, Gianna and Culhane, J. Len and Curdt, Werner and Davila, Joseph M. and Del Zanna, Giulio and Doschek, George A. and Fineschi, Silvano and Fludra, Andrzej and Gallagher, Peter T. and Green, Lucie and Harra, Louise K. and Imada, Shinsuke and Innes, Davina and Kliem, Bernhard and Korendyke, Clarence and Mariska, John T. and Martinez-Pillet, Valentin and Parenti, Susanna and Patsourakos, Spiros and Peter, Hardi and Poletto, Luca and Rutten, Robert J. and Schuehle, Udo and Siemer, Martin and Shimizu, Toshifumi and Socas-Navarro, Hector and Solanki, Sami K. and Spadaro, Daniele and Trujillo-Bueno, Javier and Tsuneta, Saku and Dominguez, Santiago Vargas and Vial, Jean-Claude and Walsh, Robert and Warren, Harry P. and Wiegelmann, Thomas and Winter, Berend and Young, Peter}, title = {LEMUR large european module for solar ultraviolet research}, series = {Experimental astronomy : an international journal on astronomical instrumentation and data analysis}, volume = {34}, journal = {Experimental astronomy : an international journal on astronomical instrumentation and data analysis}, number = {2}, publisher = {Springer}, address = {Dordrecht}, issn = {0922-6435}, doi = {10.1007/s10686-011-9274-x}, pages = {273 -- 309}, year = {2012}, abstract = {The solar outer atmosphere is an extremely dynamic environment characterized by the continuous interplay between the plasma and the magnetic field that generates and permeates it. Such interactions play a fundamental role in hugely diverse astrophysical systems, but occur at scales that cannot be studied outside the solar system. Understanding this complex system requires concerted, simultaneous solar observations from the visible to the vacuum ultraviolet (VUV) and soft X-rays, at high spatial resolution (between 0.1'' and 0.3''), at high temporal resolution (on the order of 10 s, i.e., the time scale of chromospheric dynamics), with a wide temperature coverage (0.01 MK to 20 MK, from the chromosphere to the flaring corona), and the capability of measuring magnetic fields through spectropolarimetry at visible and near-infrared wavelengths. Simultaneous spectroscopic measurements sampling the entire temperature range are particularly important. These requirements are fulfilled by the Japanese Solar-C mission (Plan B), composed of a spacecraft in a geosynchronous orbit with a payload providing a significant improvement of imaging and spectropolarimetric capabilities in the UV, visible, and near-infrared with respect to what is available today and foreseen in the near future. The Large European Module for solar Ultraviolet Research (LEMUR), described in this paper, is a large VUV telescope feeding a scientific payload of high-resolution imaging spectrographs and cameras. LEMUR consists of two major components: a VUV solar telescope with a 30 cm diameter mirror and a focal length of 3.6 m, and a focal-plane package composed of VUV spectrometers covering six carefully chosen wavelength ranges between 170 and 1270 . The LEMUR slit covers 280'' on the Sun with 0.14'' per pixel sampling. In addition, LEMUR is capable of measuring mass flows velocities (line shifts) down to 2 km s (-aEuro parts per thousand 1) or better. LEMUR has been proposed to ESA as the European contribution to the Solar C mission.}, language = {en} } @article{WendtMolaro2012, author = {Wendt, Martin and Molaro, P.}, title = {QSO 0347-383 and the invariance of m(p)/m(e) in the course of cosmic time}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {541}, journal = {Astronomy and astrophysics : an international weekly journal}, number = {3}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {0004-6361}, doi = {10.1051/0004-6361/201218862}, pages = {8}, year = {2012}, abstract = {Context. The variation of the dimensionless fundamental physical constant mu = m(p)/m(e) - the proton to electron mass ratio - can be constrained via observation of Lyman and Werner lines of molecular hydrogen in the spectra of damped Lyman alpha systems (DLAs) in the line of sight to distant QSOs. Aims. Our intention is to maximize the possible precision of quasar absorption spectroscopy with regard to the investigation of the variation of the proton-to-electron mass-ratio mu. The demand for precision requires an understanding of the errors involved and effective techniques to handle present systematic errors. Methods. An analysis based on UVES high resolution data sets of QSO 0347-383 and its DLA is put forward and new approaches to some of the steps involved in the data analysis are introduced. We apply corrections for the observed offsets between discrete spectra and for the first time we find indications for inter-order distortions. Results. Drawing on VLT-UVES observations of QSO 0347-383 in 2009 our analysis yields Delta mu/mu = (4.3 +/- 7.2) x 10(-6) at z(abs) = 3.025. Conclusions. Current analyzes tend to underestimate the impact of systematic errors. Based on the scatter of the measured redshifts and the corresponding low significance of the redshift-sensitivity correlation we estimate the limit of accuracy of line position measurements to similar to 220 m s (1), consisting of roughly 150 m s (1) due to the uncertainty of the absorption line fit and about 150 m s (1) allocated to systematics related to instrumentation and calibration.}, language = {en} } @article{BlandHawthornEllisLeonSavaletal.2011, author = {Bland-Hawthorn, Joss and Ellis, S. C. and Leon-Saval, S. G. and Haynes, R. and Roth, Martin M. and L{\"o}hmannsr{\"o}ben, Hans-Gerd and Horton, A. J. and Cuby, J. -G. and Birks, T. A. and Lawrence, J. S. and Gillingham, P. and Ryder, S. D. and Trinh, C.}, title = {A complex multi-notch astronomical filter to suppress the bright infrared sky}, series = {Nature Communications}, volume = {2}, journal = {Nature Communications}, number = {50}, publisher = {Nature Publ. Group}, address = {London}, issn = {2041-1723}, doi = {10.1038/ncomms1584}, pages = {7}, year = {2011}, abstract = {A long-standing and profound problem in astronomy is the difficulty in obtaining deep near-infrared observations due to the extreme brightness and variability of the night sky at these wavelengths. A solution to this problem is crucial if we are to obtain the deepest possible observations of the early Universe, as redshifted starlight from distant galaxies appears at these wavelengths. The atmospheric emission between 1,000 and 1,800 nm arises almost entirely from a forest of extremely bright, very narrow hydroxyl emission lines that varies on timescales of minutes. The astronomical community has long envisaged the prospect of selectively removing these lines, while retaining high throughput between them. Here we demonstrate such a filter for the first time, presenting results from the first on-sky tests. Its use on current 8 m telescopes and future 30 m telescopes will open up many new research avenues in the years to come.}, language = {en} } @article{GreenSaxenaFeyzullayevHubertetal.2012, author = {Green-Saxena, A. and Feyzullayev, A. and Hubert, C. R. J. and Kallmeyer, Jens and Krueger, M. and Sauer, P. and Schulz, Hans-Martin and Orphan, V. J.}, title = {Active sulfur cycling by diverse mesophilic and thermophilic microorganisms in terrestrial mud volcanoes of Azerbaijan}, series = {Environmental microbiology}, volume = {14}, journal = {Environmental microbiology}, number = {12}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {1462-2912}, doi = {10.1111/1462-2920.12015}, pages = {3271 -- 3286}, year = {2012}, abstract = {Terrestrial mud volcanoes (TMVs) represent geochemically diverse habitats with varying sulfur sources and yet sulfur cycling in these environments remains largely unexplored. Here we characterized the sulfur-metabolizing microorganisms and activity in four TMVs in Azerbaijan. A combination of geochemical analyses, biological rate measurements and molecular diversity surveys (targeting metabolic genes aprA and dsrA and SSU ribosomal RNA) supported the presence of active sulfur-oxidizing and sulfate-reducing guilds in all four TMVs across a range of physiochemical conditions, with diversity of these guilds being unique to each TMV. The TMVs varied in potential sulfate reduction rates (SRR) by up to four orders of magnitude with highest SRR observed in sediments where in situ sulfate concentrations were highest. Maximum temperatures at which SRR were measured was 60 degrees C in two TMVs. Corresponding with these trends in SRR, members of the potentially thermophilic, spore-forming, Desulfotomaculum were detected in these TMVs by targeted 16S rRNA analysis. Additional sulfate-reducing bacterial lineages included members of the Desulfobacteraceae and Desulfobulbaceae detected by aprA and dsrA analyses and likely contributing to the mesophilic SRR measured. Phylotypes affiliated with sulfide-oxidizing Gamma- and Betaproteobacteria were abundant in aprA libraries from low sulfate TMVs, while the highest sulfate TMV harboured 16S rRNA phylotypes associated with sulfur-oxidizing Epsilonproteobacteria. Altogether, the biogeochemical and microbiological data indicate these unique terrestrial habitats support diverse active sulfur-cycling microorganisms reflecting the in situ geochemical environment.}, language = {en} } @article{CoelhoMahroTrincaoetal.2012, author = {Coelho, Catarina and Mahro, Martin and Trincao, Jose and Carvalho, Alexandra T. P. and Ramos, Maria Joao and Terao, Mineko and Garattini, Enrico and Leimk{\"u}hler, Silke and Romao, Maria Joao}, title = {The first mammalian aldehyde oxidase crystal structure insights into substrate specificity}, series = {The journal of biological chemistry}, volume = {287}, journal = {The journal of biological chemistry}, number = {48}, publisher = {American Society for Biochemistry and Molecular Biology}, address = {Bethesda}, issn = {0021-9258}, doi = {10.1074/jbc.M112.390419}, pages = {40690 -- 40702}, year = {2012}, abstract = {Aldehyde oxidases (AOXs) are homodimeric proteins belonging to the xanthine oxidase family of molybdenum-containing enzymes. Each 150-kDa monomer contains a FAD redox cofactor, two spectroscopically distinct [2Fe-2S] clusters, and a molybdenum cofactor located within the protein active site. AOXs are characterized by broad range substrate specificity, oxidizing different aldehydes and aromatic N-heterocycles. Despite increasing recognition of its role in the metabolism of drugs and xenobiotics, the physiological function of the protein is still largely unknown. We have crystallized and solved the crystal structure of mouse liver aldehyde oxidase 3 to 2.9 angstrom. This is the first mammalian AOX whose structure has been solved. The structure provides important insights into the protein active center and further evidence on the catalytic differences characterizing AOX and xanthine oxidoreductase. The mouse liver aldehyde oxidase 3 three-dimensional structure combined with kinetic, mutagenesis data, molecular docking, and molecular dynamics studies make a decisive contribution to understand the molecular basis of its rather broad substrate specificity.}, language = {en} } @article{JanssenArhonditsisBeusenetal.2015, author = {Janssen, Annette B. G. and Arhonditsis, George B. and Beusen, Arthur and Bolding, Karsten and Bruce, Louise and Bruggeman, Jorn and Couture, Raoul-Marie and Downing, Andrea S. and Elliott, J. Alex and Frassl, Marieke A. and Gal, Gideon and Gerla, Daan J. and Hipsey, Matthew R. and Hu, Fenjuan and Ives, Stephen C. and Janse, Jan H. and Jeppesen, Erik and Joehnk, Klaus D. and Kneis, David and Kong, Xiangzhen and Kuiper, Jan J. and Lehmann, Moritz K. and Lemmen, Carsten and Oezkundakci, Deniz and Petzoldt, Thomas and Rinke, Karsten and Robson, Barbara J. and Sachse, Rene and Schep, Sebastiaan A. and Schmid, Martin and Scholten, Huub and Teurlincx, Sven and Trolle, Dennis and Troost, Tineke A. and Van Dam, Anne A. and Van Gerven, Luuk P. A. and Weijerman, Mariska and Wells, Scott A. and Mooij, Wolf M.}, title = {Exploring, exploiting and evolving diversity of aquatic ecosystem models: a community perspective}, series = {Aquatic ecology : the international forum covering research in freshwater and marine environments}, volume = {49}, journal = {Aquatic ecology : the international forum covering research in freshwater and marine environments}, number = {4}, publisher = {Springer}, address = {Dordrecht}, issn = {1386-2588}, doi = {10.1007/s10452-015-9544-1}, pages = {513 -- 548}, year = {2015}, abstract = {Here, we present a community perspective on how to explore, exploit and evolve the diversity in aquatic ecosystem models. These models play an important role in understanding the functioning of aquatic ecosystems, filling in observation gaps and developing effective strategies for water quality management. In this spirit, numerous models have been developed since the 1970s. We set off to explore model diversity by making an inventory among 42 aquatic ecosystem modellers, by categorizing the resulting set of models and by analysing them for diversity. We then focus on how to exploit model diversity by comparing and combining different aspects of existing models. Finally, we discuss how model diversity came about in the past and could evolve in the future. Throughout our study, we use analogies from biodiversity research to analyse and interpret model diversity. We recommend to make models publicly available through open-source policies, to standardize documentation and technical implementation of models, and to compare models through ensemble modelling and interdisciplinary approaches. We end with our perspective on how the field of aquatic ecosystem modelling might develop in the next 5-10 years. To strive for clarity and to improve readability for non-modellers, we include a glossary.}, language = {en} } @article{AchillesFinkFischeretal.2016, author = {Achilles, E. I. S. and Fink, G. R. and Fischer, Martin H. and Dovern, A. and Held, A. and Timpert, D. C. and Schroeter, C. and Schuetz, K. and Kloetzsch, C. and Weiss, P. H.}, title = {Effect of meaning on apraxic finger imitation deficits}, series = {Neuropsychologia : an international journal in behavioural and cognitive neuroscience}, volume = {82}, journal = {Neuropsychologia : an international journal in behavioural and cognitive neuroscience}, publisher = {Elsevier}, address = {Oxford}, issn = {0028-3932}, doi = {10.1016/j.neuropsychologia.2015.12.022}, pages = {74 -- 83}, year = {2016}, abstract = {Apraxia typically results from left-hemispheric (LH), but also from right-hemispheric (RH) stroke, and often impairs gesture imitation. Especially in LH stroke, it is important to differentiate apraxia-induced gesture imitation deficits from those due to co-morbid aphasia and associated semantic deficits, possibly influencing the imitation of meaningful (MF) gestures. To explore this issue, we first investigated if the 10 supposedly meaningless (ML) gestures of a widely used finger imitation test really carry no meaning, or if the test also contains MF gestures, by asking healthy subjects (n=45) to classify these gestures as MF or ML. Most healthy subjects (98\%) classified three of the 10 gestures as clearly MF. Only two gestures were considered predominantly ML. We next assessed how imitation in stroke patients (255 LH, 113 RH stroke) is influenced by gesture meaning and how aphasia influences imitation of LH stroke patients (n=208). All patients and especially patients with imitation deficits (17\% of LH, 27\% of RH stroke patients) imitated MF gestures significantly better than ML gestures. Importantly, meaningfulness-scores of all 10 gestures significantly predicted imitation scores of patients with imitation deficits. Furthermore, especially in LH stroke patients with imitation deficits, the severity of aphasia significantly influenced the imitation of MF, but not ML gestures. Our findings in a large patient cohort support current cognitive models of imitation and strongly suggest that ML gestures are particularly sensitive to detect imitation deficits while minimising confounding effects of aphasia which affect the imitation of MF gestures in LH stroke patients. (C) 2015 Elsevier Ltd. All rights reserved.}, language = {en} } @article{OstermeyerKlemzKubinaetal.2002, author = {Ostermeyer, Martin and Klemz, Guido and Kubina, P. and Menzel, Ralf}, title = {Quasi-continuous-wave birefringence-compensated single- and double-rod Nd : YAG lasers}, year = {2002}, language = {en} } @article{KlemzKubinaOstermeyeretal.2001, author = {Klemz, Guido and Kubina, P. and Ostermeyer, Martin and Menzel, Ralf}, title = {Diode pumped high power TEM_00 Nd:YAG rod laser with birefringence compensation}, year = {2001}, language = {en} } @article{MiedemaMitznerGanschowetal.2017, author = {Miedema, P. S. and Mitzner, Rolf and Ganschow, S. and F{\"o}hlisch, Alexander and Beye, Martin}, title = {X-ray spectroscopy on the active ion in laser crystals}, series = {Physical chemistry, chemical physics : a journal of European Chemical Societies}, volume = {19}, journal = {Physical chemistry, chemical physics : a journal of European Chemical Societies}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1463-9076}, doi = {10.1039/c7cp03026f}, pages = {21800 -- 21806}, year = {2017}, abstract = {The active ions in typical laser crystals were studied with Resonant Inelastic X-ray Scattering (RIXS) and Partial Fluorescence Yield X-ray Absorption (PFY-XAS) spectroscopies as solid state model systems for dilute active centers. We analyzed Ti3+ and Cr3+ in alpha-Al2O3:Ti3+ and LiCaAlF6:Cr3+, respectively. The comparison of experimental data with semi-empirical multiplet calculations provides insights into the electronic structure and shows how measured crystal field energies are related across different spectroscopies.}, language = {en} } @article{SaremAryaHeizmannetal.2018, author = {Sarem, Melika and Arya, Neha and Heizmann, Miriam and Neffe, Axel T. and Barbero, Andrea and Gebauer, Tim P. and Martin, Ivan and Lendlein, Andreas and Shastri, V. Prasad}, title = {Interplay between stiffness and degradation of architectured gelatin hydrogels leads to differential modulation of chondrogenesis in vitro and in vivo}, series = {Acta biomaterialia}, volume = {69}, journal = {Acta biomaterialia}, publisher = {Elsevier}, address = {Oxford}, issn = {1742-7061}, doi = {10.1016/j.actbio.2018.01.025}, pages = {83 -- 94}, year = {2018}, abstract = {The limited capacity of cartilage to heal large lesions through endogenous mechanisms has led to extensive effort to develop materials to facilitate chondrogenesis. Although physical-chemical properties of biomaterials have been shown to impact in vitro chondrogenesis, whether these findings are translatable in vivo is subject of debate. Herein, architectured 3D hydrogel scaffolds (ArcGel) (produced by crosslinking gelatin with ethyl lysine diisocyanate (LDI)) were used as a model system to investigate the interplay between scaffold mechanical properties and degradation on matrix deposition by human articular chondrocytes (HAC) from healthy donors in vitro and in vivo. Using ArcGel scaffolds of different tensile and shear modulus, and degradation behavior; in this study, we compared the fate of ex vivo engineeredArcGels-chondrocytes constructs, i.e. the traditional tissue engineering approach, with the de novo formation of cartilaginous tissue in HAC laden ArcGels in an ectopic nude mouse model. While the softer and fast degrading ArcGel (LNCO3) was more efficient at promoting chondrogenic differentiation in vitro, upon ectopic implantation, the stiffer and slow degrading ArcGel (LNCO8) was superior in maintaining chondrogenic phenotype in HAC and retention of cartilaginous matrix. Furthermore, surprisingly the de novo formation of cartilage tissue was promoted only in LNCO8. Since HAC cultured for only three days in the LNCO8 environment showed upregulation of hypoxia-associated genes, this suggests a potential role for hypoxia in the observed in vivo outcomes. In summary, this study sheds light on how immediate environment (in vivo versus in vitro) can significantly impact the outcomes of cell-laden biomaterials. Statement of Significance In this study, 3D architectured hydrogels (ArcGels) with different mechanical and biodegradation properties were investigated for their potential to promote formation of cartilaginous matrix by human articular chondrocytes in vitro and in vivo. Two paradigms were explored (i) ex vivo engineering followed by in vivo implantation in ectopic site of nude mice and (ii) short in vitro culture (3 days) followed by implantation to induce de novo cartilage formation. Softer and fast degrading ArcGel were better at promoting chondrogenesis in vitro, while stiffer and slow degrading ArcGel were strikingly superior in both maintaining chondrogenesis in vivo and inducing de novo formation of cartilage. Our findings highlight the importance of the interplay between scaffold mechanics and degradation in chondrogenesis.}, language = {en} } @article{OttenKnoxBouldayetal.2018, author = {Otten, Cecile and Knox, Jessica and Boulday, Gwenola and Eymery, Mathias and Haniszewski, Marta and Neuenschwander, Martin and Radetzki, Silke and Vogt, Ingo and Haehn, Kristina and De Luca, Coralie and Cardoso, Cecile and Hamad, Sabri and Igual Gil, Carla and Roy, Peter and Albiges-Rizo, Corinne and Faurobert, Eva and von Kries, Jens P. and Campillos, Monica and Tournier-Lasserve, Elisabeth and Derry, William Brent and Abdelilah-Seyfried, Salim}, title = {Systematic pharmacological screens uncover novel pathways involved in cerebral cavernous malformations}, series = {EMBO molecular medicine}, volume = {10}, journal = {EMBO molecular medicine}, number = {10}, publisher = {Wiley}, address = {Hoboken}, issn = {1757-4676}, doi = {10.15252/emmm.201809155}, pages = {17}, year = {2018}, abstract = {Cerebral cavernous malformations (CCMs) are vascular lesions in the central nervous system causing strokes and seizures which currently can only be treated through neurosurgery. The disease arises through changes in the regulatory networks of endothelial cells that must be comprehensively understood to develop alternative, non-invasive pharmacological therapies. Here, we present the results of several unbiased small-molecule suppression screens in which we applied a total of 5,268 unique substances to CCM mutant worm, zebrafish, mouse, or human endothelial cells. We used a systems biology-based target prediction tool to integrate the results with the whole-transcriptome profile of zebrafish CCM2 mutants, revealing signaling pathways relevant to the disease and potential targets for small-molecule-based therapies. We found indirubin-3-monoxime to alleviate the lesion burden in murine preclinical models of CCM2 and CCM3 and suppress the loss-of-CCM phenotypes in human endothelial cells. Our multi-organism-based approach reveals new components of the CCM regulatory network and foreshadows novel small-molecule-based therapeutic applications for suppressing this devastating disease in patients.}, language = {en} } @article{BronnerLeyssnerStremlauetal.2012, author = {Bronner, C. and Leyssner, F. and Stremlau, S. and Utecht, Manuel Martin and Saalfrank, Peter and Klamroth, Tillmann and Tegeder, P.}, title = {Electronic structure of a subnanometer wide bottom-up fabricated graphene nanoribbon: End states, band gap, and dispersion}, series = {Physical review : B, Condensed matter and materials physics}, volume = {86}, journal = {Physical review : B, Condensed matter and materials physics}, number = {8}, publisher = {American Physical Society}, address = {College Park}, issn = {1098-0121}, doi = {10.1103/PhysRevB.86.085444}, pages = {5}, year = {2012}, abstract = {Angle-resolved two-photon photoemission and high-resolution electron energy loss spectroscopy are employed to derive the electronic structure of a subnanometer atomically precise quasi-one-dimensional graphene nanoribbon (GNR) on Au(111). We resolved occupied and unoccupied electronic bands including their dispersion and determined the band gap, which possesses an unexpectedly large value of 5.1 eV. Supported by density functional theory calculations for the idealized infinite polymer and finite size oligomers, an unoccupied nondispersive electronic state with an energetic position in the middle of the band gap of the GNR could be identified. This state resides at both ends of the ribbon (end state) and is only found in the finite sized systems, i.e., the oligomers.}, language = {en} } @misc{DoegeHoenzkeSchumacheretal.2016, author = {Doege, N. and Hoenzke, S. and Schumacher, Fabian and Balzus, Benjamin and Colombo, Miriam and Hadam, S. and Rancan, F. and Blume-Peytavi, Ulrike and Schindler, A. and Ruehl, E. and Skov, P. and Church, Martin K. and Hedtrich, Sarah and Kleuser, Burkhard and Bodmeier, Roland and Vogt, A.}, title = {Ex vivo microdialysis used for the preclinical assessment of anti-inflammatory therapy}, series = {Experimental dermatology : the official journal of the European Immunodermatology Society}, volume = {25}, journal = {Experimental dermatology : the official journal of the European Immunodermatology Society}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0906-6705}, pages = {E32 -- E32}, year = {2016}, language = {en} } @article{SellbergMcQueenLaksmonoetal.2015, author = {Sellberg, Jonas A. and McQueen, Trevor A. and Laksmono, Hartawan and Schreck, Simon and Beye, Martin and DePonte, Daniel P. and Kennedy, Brian and Nordlund, Dennis and Sierra, Raymond G. and Schlesinger, Daniel and Tokushima, Takashi and Zhovtobriukh, Iurii and Eckert, Sebastian and Segtnan, Vegard H. and Ogasawara, Hirohito and Kubicek, Katharina and Techert, Simone and Bergmann, Uwe and Dakovski, Georgi L. and Schlotter, William F. and Harada, Yoshihisa and Bogan, Michael J. and Wernet, Philippe and F{\"o}hlisch, Alexander and Pettersson, Lars G. M. and Nilsson, Anders}, title = {X-ray emission spectroscopy of bulk liquid water in "no-man's land"}, series = {The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr}, volume = {142}, journal = {The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr}, number = {4}, publisher = {American Institute of Physics}, address = {Melville}, issn = {0021-9606}, doi = {10.1063/1.4905603}, pages = {9}, year = {2015}, abstract = {The structure of bulk liquid water was recently probed by x-ray scattering below the temperature limit of homogeneous nucleation (T-H) of similar to 232 K [J. A. Sellberg et al., Nature 510, 381-384 (2014)]. Here, we utilize a similar approach to study the structure of bulk liquid water below T-H using oxygen K-edge x-ray emission spectroscopy (XES). Based on previous XES experiments [T. Tokushima et al., Chem. Phys. Lett. 460, 387-400 (2008)] at higher temperatures, we expected the ratio of the 1b(1)' and 1b(1)" peaks associated with the lone-pair orbital in water to change strongly upon deep supercooling as the coordination of the hydrogen (H-) bonds becomes tetrahedral. In contrast, we observed only minor changes in the lone-pair spectral region, challenging an interpretation in terms of two interconverting species. A number of alternative hypotheses to explain the results are put forward and discussed. Although the spectra can be explained by various contributions from these hypotheses, we here emphasize the interpretation that the line shape of each component changes dramatically when approaching lower temperatures, where, in particular, the peak assigned to the proposed disordered component would become more symmetrical as vibrational interference becomes more important. (C) 2015 AIP Publishing LLC.}, language = {en} } @article{EckertMiedemaQuevedoetal.2016, author = {Eckert, Sebastian and Miedema, P. S. and Quevedo, W. and Fondell, Mattis and Beye, Martin and Pietzsch, Annette and Ross, M. and Khalil, M. and F{\"o}hlisch, Alexander}, title = {Molecular structures and protonation state of 2-Mercaptopyridine in aqueous solution}, series = {Chemical physics letters}, volume = {647}, journal = {Chemical physics letters}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0009-2614}, doi = {10.1016/j.cplett.2016.01.050}, pages = {103 -- 106}, year = {2016}, abstract = {The speciation of 2-Mercaptopyridine in aqueous solution has been investigated with nitrogen 1s Near Edge X-ray Absorption Fine Structure spectroscopy and time dependent Density Functional Theory. The prevalence of distinct species as a function of the solvent basicity is established. No indications of dimerization towards high concentrations are found. The determination of different molecular structures of 2-Mercaptopyridine in aqueous solution is put into the context of proton-transfer in keto-enol and thione-thiol tautomerisms. (C) 2016 The Authors. Published by Elsevier B.V.}, language = {en} } @article{SchreckBeyeSellbergetal.2014, author = {Schreck, Simon and Beye, Martin and Sellberg, Jonas A. and McQueen, Trevor and Laksmono, Hartawan and Kennedy, Brian and Eckert, Sebastian and Schlesinger, Daniel and Nordlund, Dennis and Ogasawara, Hirohito and Sierra, Raymond G. and Segtnan, Vegard H. and Kubicek, Katharina and Schlotter, William F. and Dakovski, Georgi L. and Moeller, Stefan P. and Bergmann, Uwe and Techert, Simone and Pettersson, Lars G. M. and Wernet, Philippe and Bogan, Michael J. and Harada, Yoshihisa and Nilsson, Anders and F{\"o}hlisch, Alexander}, title = {Reabsorption of soft x-ray emission at high x-ray free-electron laserfluences}, series = {Physical review letters}, volume = {113}, journal = {Physical review letters}, number = {15}, publisher = {American Physical Society}, address = {College Park}, issn = {0031-9007}, doi = {10.1103/PhysRevLett.113.153002}, pages = {6}, year = {2014}, abstract = {We report on oxygen K-edge soft x-ray emission spectroscopy from a liquid water jet at the Linac Coherent Light Source. We observe significant changes in the spectral content when tuning over a wide range of incident x-ray fluences. In addition the total emission yield decreases at high fluences. These modifications result from reabsorption of x-ray emission by valence-excited molecules generated by the Auger cascade. Our observations have major implications for future x-ray emission studies at intense x-ray sources. We highlight the importance of the x-ray pulse length with respect to the core-hole lifetime.}, language = {en} } @article{PerezLopezMartinVelazquezSanchezMoraletal.2017, author = {Perez-Lopez, Raul and Martin-Velazquez, Saul and Sanchez-Moral, Sergio and Patyniak, Magda and Lopez-Gutierrez, Jose and Cuezva, Soledad and Lario, J. and Silva, P. G. and Rodriguez-Pascua, M. A. and Giner-Robles, J. L.}, title = {New insights on speleoseismology: The geothermal gradient and heat flow values in caves for the study of active faults}, series = {Quaternary international : the journal of the International Union for Quaternary Research}, volume = {451}, journal = {Quaternary international : the journal of the International Union for Quaternary Research}, publisher = {Elsevier}, address = {Oxford}, issn = {1040-6182}, doi = {10.1016/j.quaint.2016.11.026}, pages = {165 -- 175}, year = {2017}, abstract = {Normally in paleoseismology, the study of the tectonic slip-rate is performed in trenches on the fault scarp, or by the estimation of fault movements from the geomorphic features. In this work, we have carried out a paleoseismic analysis of the Benis Fault, located in southeast Spain, combined with a geothermal analysis inside a deep cave related to the fault (-350 m). Thus, we have estimated the last earthquake magnitude and time of occurrence from evidence of ceiling collapse and displaced carbonate blocks inside a cave, which is developed across the fault. The magnitude was obtained from the application of the empirical relationship of the fault parameters and coseismic vertical displacement, yielding a value ranging between M 5.9 and M 6.5. Moreover, we dated this paleoearthquake by the paleontological record of a "Lynx pardinus spelaea", with an age of 65 +/- 18 ka BP. Additionally, we have measured the thermal profile of the Benis Cave (-350 m of depth), from single rock point temperature measurements during 2 years. The temperature profile shows three different parts inside the cave, the shallow heterogeneous thermal zone till 50 m depth; the homogeneous thermal zone 150 m till with constant temperature and the hetero-thermal deep zone, deeper than 150 m and till the deepest zone (350 m). Furthermore, we have estimated the Vertical Geothermal Gradient, 1.85 degrees C/100 m for the deepest zone (-150; -290 m). The temperature increases with depth, showing a reverse thermal profile in comparison with normal gradients in deep caves. Finally, we have calculated the heat flux of 0.46 mWm(2). (C) 2016 Elsevier Ltd and INQUA. All rights reserved.}, language = {en} } @article{JumaAkalaEyaseetal.2011, author = {Juma, Wanyama P. and Akala, Hoseah M. and Eyase, Fredrick L. and Muiva, Lois M. and Heydenreich, Matthias and Okalebo, Faith A. and Gitu, Peter M. and Peter, Martin G. and Walsh, Douglas S. and Imbuga, Mabel and Yenesew, Abiy}, title = {Terpurinflavone an antiplasmodial flavone from the stem of Tephrosia Purpurea}, series = {Phytochemistry letters}, volume = {4}, journal = {Phytochemistry letters}, number = {2}, publisher = {Elsevier}, address = {Amsterdam}, issn = {1874-3900}, doi = {10.1016/j.phytol.2011.02.010}, pages = {176 -- 178}, year = {2011}, abstract = {The stem extract of Tephrosia purpurea showed antiplasmodial activity against the D6 (chloroquine-sensitive) and W2 (chloroquine-resistant) strains of Plasmodium falciparum with IC(50) values of 10.47 +/- 2.22 mu g/ml and 12.06 +/- 2.54 mu g/ml, respectively. A new prenylated flavone, named terpurinflavone, along with the known compounds lanceolatin A, (-)-semiglabrin and lanceolatin B have been isolated from this extract. The new compound, terpurinflavone, showed the highest antiplasmodial activity with IC(50) values of 3.12 +/- 0.28 mu M (D6) and 6.26 +/- 2.66 mu M (W2). The structures were determined on the basis of spectroscopic evidence.}, language = {en} } @article{RichterNuzaFoxetal.2017, author = {Richter, Philipp and Nuza, S. E. and Fox, Andrew J. and Wakker, Bart P. and Lehner, N. and Ben Bekhti, Nadya and Fechner, Cora and Wendt, Martin and Howk, J. Christopher and Muzahid, S. and Ganguly, R. and Charlton, Jane C.}, title = {An HST/COS legacy survey of high-velocity ultraviolet absorption in the}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {607}, journal = {Astronomy and astrophysics : an international weekly journal}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {1432-0746}, doi = {10.1051/0004-6361/201630081}, pages = {90}, year = {2017}, abstract = {Context. The Milky Way is surrounded by large amounts of diffuse gaseous matter that connects the stellar body of our Galaxy with its large-scale Local Group (LG) environment. Aims. To characterize the absorption properties of this circumgalactic medium (CGM) and its relation to the LG we present the so-far largest survey of metal absorption in Galactic high-velocity clouds (HVCs) using archival ultraviolet (UV) spectra of extragalactic background sources. The UV data are obtained with the Cosmic Origins Spectrograph (COS) onboard the Hubble Space Telescope (HST) and are supplemented by 21 cm radio observations of neutral hydrogen. Methods. Along 270 sightlines we measure metal absorption in the lines of Si II, Si III, C II, and C IV and associated H I 21 cm emission in HVCs in the velocity range vertical bar v(LSR)vertical bar = 100-500 km s(-1). With this unprecedented large HVC sample we were able to improve the statistics on HVC covering fractions, ionization conditions, small-scale structure, CGM mass, and inflow rate. For the first time, we determine robustly the angular two point correlation function of the high-velocity absorbers, systematically analyze antipodal sightlines on the celestial sphere, and compare the HVC absorption characteristics with that of damped Lyman alpha absorbers (DLAs) and constrained cosmological simulations of the LG (CLUES project).}, language = {en} } @article{StolbovaMartinBookhagenetal.2014, author = {Stolbova, Veronika and Martin, P. and Bookhagen, Bodo and Marwan, Norbert and Kurths, J{\"u}rgen}, title = {Topology and seasonal evolution of the network of extreme precipitation over the Indian subcontinent and Sri Lanka}, series = {Nonlinear processes in geophysics}, volume = {21}, journal = {Nonlinear processes in geophysics}, number = {4}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1023-5809}, doi = {10.5194/npg-21-901-2014}, pages = {901 -- 917}, year = {2014}, abstract = {This paper employs a complex network approach to determine the topology and evolution of the network of extreme precipitation that governs the organization of extreme rainfall before, during, and after the Indian Summer Monsoon (ISM) season. We construct networks of extreme rainfall events during the ISM (June-September), post-monsoon (October-December), and pre-monsoon (March-May) periods from satellite-derived (Tropical Rainfall Measurement Mission, TRMM) and rain-gauge interpolated (Asian Precipitation Highly Resolved Observational Data Integration Towards the Evaluation of Water Resources, APHRODITE) data sets. The structure of the networks is determined by the level of synchronization of extreme rainfall events between different grid cells throughout the Indian subcontinent. Through the analysis of various complex-network metrics, we describe typical repetitive patterns in North Pakistan (NP), the Eastern Ghats (EG), and the Tibetan Plateau (TP). These patterns appear during the pre-monsoon season, evolve during the ISM, and disappear during the post-monsoon season. These are important meteorological features that need further attention and that may be useful in ISM timing and strength prediction.}, language = {en} } @article{NishikawaHardeeZhangetal.2013, author = {Nishikawa, Ken-Ichi and Hardee, P. and Zhang, B. and Dutan, I. and Medvedev, M. and Choi, E. J. and Min, K. W. and Niemiec, J. and Mizuno, Y. and Nordlund, Ake and Frederiksen, Jacob Trier and Sol, H. and Pohl, Martin and Hartmann, D. H.}, title = {Magnetic field generation in a jet-sheath plasma via the kinetic Kelvin-Helmholtz instability}, series = {Annales geophysicae}, volume = {31}, journal = {Annales geophysicae}, number = {9}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {0992-7689}, doi = {10.5194/angeo-31-1535-2013}, pages = {1535 -- 1541}, year = {2013}, abstract = {We have investigated the generation of magnetic fields associated with velocity shear between an unmagnetized relativistic jet and an unmagnetized sheath plasma. We have examined the strong magnetic fields generated by kinetic shear (Kelvin-Helmholtz) instabilities. Compared to the previous studies using counter-streaming performed by Alves et al. (2012), the structure of the kinetic Kelvin-Helmholtz instability (KKHI) of our jet-sheath configuration is slightly different, even for the global evolution of the strong transverse magnetic field. In our simulations the major components of growing modes are the electric field E-z, perpendicular to the flow boundary, and the magnetic field B-y, transverse to the flow direction. After the B-y component is excited, an induced electric field E-x, parallel to the flow direction, becomes significant. However, other field components remain small. We find that the structure and growth rate of KKHI with mass ratios m(i)/m(e) = 1836 and m(i)/m(e) = 20 are similar. In our simulations in the nonlinear stage is not as clear as in counter-streaming cases. The growth rate for a mildly-relativistic jet case (gamma(j) = 1.5) is larger than for a relativistic jet case (gamma(j) = 15).}, language = {en} } @article{NishikawaFrederiksenNordlundetal.2016, author = {Nishikawa, Ken-Ichi and Frederiksen, J. T. and Nordlund, A. and Mizuno, Y. and Hardee, P. E. and Niemiec, J. and Gomez, J. L. and Dutan, I. and Meli, A. and Sol, H. and Pohl, Martin and Hartmann, D. H.}, title = {EVOLUTION OF GLOBAL RELATIVISTIC JETS: COLLIMATIONS AND EXPANSION WITH kKHI AND THE WEIBEL INSTABILITY}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {820}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0004-637X}, doi = {10.3847/0004-637X/820/2/94}, pages = {14}, year = {2016}, abstract = {In the study of relativistic jets one of the key open questions is their interaction with the environment. Here. we study the initial evolution of both electron-proton (e(-) - p(+)) and electron-positron (e(+/-)) relativistic jets, focusing on their lateral interaction with ambient plasma. We follow the evolution of toroidal magnetic fields generated by both the kinetic Kelvin-Helmholtz and Mushroom instabilities. For an e(-) - p(+) jet, the induced magnetic field collimates the jet and electrons are perpendicularly accelerated. As the instabilities saturate and subsequently weaken, the magnetic polarity switches from clockwise to counterclockwise in the middle of the jet. For an e(+/-) jet, we find strong mixing of electrons and positrons with the ambient plasma, resulting in the creation of a bow shock. The merging of current filaments generates density inhomogeneities that. initiate a forward shock. Strong jet-ambient plasma mixing prevents a full development of the jet (on the scale studied), revealing evidence for both jet collimation and particle acceleration in the forming bow shock. Differences in the magnetic field structure generated by e(-) - p(+) and e(+/-) jets may contribute to the polarization properties of the observed emission in AGN jets and gamma-ray bursts.}, language = {en} } @article{NishikawaHardeeDutanetal.2014, author = {Nishikawa, Ken-Ichi and Hardee, P. E. and Dutan, I. and Niemiec, J. and Medvedev, M. and Mizuno, Y. and Meli, A. and Sol, H. and Zhang, B. and Pohl, Martin and Hartmann, D. H.}, title = {Magnetic agnetic field generation in core-sheath jets via the kinetic Kelvin-Helmholtz instability}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {793}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, number = {1}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0004-637X}, doi = {10.1088/0004-637X/793/1/60}, pages = {16}, year = {2014}, abstract = {We have investigated magnetic field generation in velocity shears via the kinetic Kelvin-Helmholtz instability (kKHI) using a relativistic plasma jet core and stationary plasma sheath. Our three-dimensional particle-in-cell simulations consider plasma jet cores with Lorentz factors of 1.5, 5, and 15 for both electron-proton and electron-positron plasmas. For electron-proton plasmas, we find generation of strong large-scale DC currents and magnetic fields that extend over the entire shear surface and reach thicknesses of a few tens of electron skin depths. For electron-positron plasmas, we find generation of alternating currents and magnetic fields. Jet and sheath plasmas are accelerated across the shear surface in the strong magnetic fields generated by the kKHI. The mixing of jet and sheath plasmas generates a transverse structure similar to that produced by the Weibel instability.}, language = {en} } @article{DelahayeFiassonPohletal.2011, author = {Delahaye, T. and Fiasson, A. and Pohl, Martin and Salati, P.}, title = {The GeV-TeV Galactic gamma-ray diffuse emission I. Uncertainties in the predictions of the hadronic component}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {531}, journal = {Astronomy and astrophysics : an international weekly journal}, number = {4}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {0004-6361}, doi = {10.1051/0004-6361/201116647}, pages = {19}, year = {2011}, abstract = {Context. The Galactic gamma-ray diffuse emission is currently observed in the GeV-TeV energy range with unprecedented accuracy by the Fermi satellite. Understanding this component is crucial because it provides a background to many different signals, such as extragalactic sources or annihilating dark matter. It is timely to reinvestigate how it is calculated and to assess the various uncertainties that are likely to affect the accuracy of the predictions. Aims. The Galactic gamma-ray diffuse emission is mostly produced above a few GeV by the interactions of cosmic ray primaries impinging on the interstellar material. The theoretical error on that component is derived by exploring various potential sources of uncertainty. Particular attention is paid to cosmic ray propagation. Nuclear cross sections, the proton and helium fluxes at the Earth's position, the Galactic radial profile of supernova remnants, and the hydrogen distribution can also severely affect the signal. Methods. The propagation of cosmic ray species throughout the Galaxy is described in the framework of a semi-analytic two-zone diffusion/convection model. The gamma-ray flux is reliably and quickly determined. This allows conversion of the constraints set by the boron-to-carbon data into a theoretical uncertainty on the diffuse emission. New deconvolutions of the HI and CO sky maps are also used to get the hydrogen distribution within the Galaxy. Results. The thickness of the cosmic ray diffusive halo is found to have a significant effect on the Galactic gamma-ray diffuse emission, while the interplay between diffusion and convection has little influence on the signal. The uncertainties related to nuclear cross sections and to the primary cosmic ray fluxes at the Earth are significant. The radial distribution of supernova remnants along the Galactic plane turns out to be a key ingredient. As expected, the predictions are extremely sensitive to the spatial distribution of hydrogen within the Milky Way. Conclusions. Most of the sources of uncertainty are likely to be reduced in the near future. The stress should be put (i) on better determination of the thickness of the cosmic ray diffusive halo; and (ii) on refined observations of the radial profile of supernova remnants.}, language = {en} } @article{BarnettWestburySandovalVelascoetal.2020, author = {Barnett, Ross and Westbury, Michael V. and Sandoval-Velasco, Marcela and Vieira, Filipe Garrett and Jeon, Sungwon and Zazula, Grant and Martin, Michael D. and Ho, Simon Y. W. and Mather, Niklas and Gopalakrishnan, Shyam and Ramos-Madrigal, Jazmin and de Manuel, Marc and Zepeda-Mendoza, M. Lisandra and Antunes, Agostinho and Baez, Aldo Carmona and De Cahsan, Binia and Larson, Greger and O'Brien, Stephen J. and Eizirik, Eduardo and Johnson, Warren E. and Koepfli, Klaus-Peter and Wilting, Andreas and Fickel, J{\"o}rns and Dalen, Love and Lorenzen, Eline D. and Marques-Bonet, Tomas and Hansen, Anders J. and Zhang, Guojie and Bhak, Jong and Yamaguchi, Nobuyuki and Gilbert, M. Thomas P.}, title = {Genomic adaptations and evolutionary history of the extinct scimitar-toothed cat}, series = {Current biology}, volume = {30}, journal = {Current biology}, number = {24}, publisher = {Cell Press}, address = {Cambridge}, issn = {0960-9822}, doi = {10.1016/j.cub.2020.09.051}, pages = {14}, year = {2020}, abstract = {Homotherium was a genus of large-bodied scimitar-toothed cats, morphologically distinct from any extant felid species, that went extinct at the end of the Pleistocene [1-4]. They possessed large, saber-form serrated canine teeth, powerful forelimbs, a sloping back, and an enlarged optic bulb, all of which were key characteristics for predation on Pleistocene megafauna [5]. Previous mitochondrial DNA phylogenies suggested that it was a highly divergent sister lineage to all extant cat species [6-8]. However, mitochondrial phylogenies can be misled by hybridization [9], incomplete lineage sorting (ILS), or sex-biased dispersal patterns [10], which might be especially relevant for Homotherium since widespread mito-nuclear discrepancies have been uncovered in modern cats [10]. To examine the evolutionary history of Homotherium, we generated a -7x nuclear genome and a similar to 38x exome from H. latidens using shotgun and target-capture sequencing approaches. Phylogenetic analyses reveal Homotherium as highly divergent (similar to 22.5 Ma) from living cat species, with no detectable signs of gene flow. Comparative genomic analyses found signatures of positive selection in several genes, including those involved in vision, cognitive function, and energy consumption, putatively consistent with diurnal activity, well-developed social behavior, and cursorial hunting [5]. Finally, we uncover relatively high levels of genetic diversity, suggesting that Homotherium may have been more abundant than the limited fossil record suggests [3, 4, 11-14]. Our findings complement and extend previous inferences from both the fossil record and initial molecular studies, enhancing our understanding of the evolution and ecology of this remarkable lineage.}, language = {en} } @misc{NishikawaZhangChoietal.2012, author = {Nishikawa, K.-I. and Zhang, B. and Choi, E. J. and Min, K. W. and Niemiec, J. and Medvedev, M. and Hardee, P. and Mizuno, Y. and Nordlund, A. and Frederiksen, J. and Sol, H. and Pohl, Martin and Hartmann, D. H. and Fishman, G.J.}, title = {Radiation from accelerated particles in shocks}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, number = {600}, issn = {1866-8372}, doi = {10.25932/publishup-41312}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-413128}, pages = {371 -- 372}, year = {2012}, abstract = {Recent PIC simulations of relativistic electron-positron (electron-ion) jets injected into a stationary medium show that particle acceleration occurs in the shocked regions. Simulations show that the Weibel instability is responsible for generating and amplifying highly nonuniform, small-scale magnetic fields and for particle acceleration. These magnetic fields contribute to the electron's transverse eflection behind the shock. The "jitter" radiation from deflected electrons in turbulent magnetic fields has properties different from synchrotron radiation calculated in a uniform magnetic field. This jitter radiation may be important for understanding the complex time evolution and/or spectral structure of gamma-ray bursts, relativistic jets in general, and supernova remnants. In order to calculate radiation from first principles and go beyond the standard synchrotron model, we have used PIC simulations. We present synthetic spectra to compare with the spectra obtained from Fermi observations.}, language = {en} } @article{StruckAndermannHoviusetal.2015, author = {Struck, Martin and Andermann, Christoff and Hovius, Niels and Korup, Oliver and Turowski, Jens M. and Bista, Raj and Pandit, Hari P. and Dahal, Ranjan K.}, title = {Monsoonal hillslope processes determine grain size-specific suspended sediment fluxes in a trans-Himalayan river}, series = {Geophysical research letters}, volume = {42}, journal = {Geophysical research letters}, number = {7}, publisher = {American Geophysical Union}, address = {Washington}, issn = {0094-8276}, doi = {10.1002/2015GL063360}, pages = {2302 -- 2308}, year = {2015}, abstract = {Sediments in rivers record the dynamics of erosion processes. While bulk sediment fluxes are easily and routinely obtained, sediment caliber remains underexplored when inferring erosion mechanisms. Yet sediment grain size distributions may be the key to discriminating their origin. We have studied grain size-specific suspended sediment fluxes in the Kali Gandaki, a major trans-Himalayan river. Two strategically located gauging stations enable tracing of sediment caliber on either side of the Himalayan orographic barrier. The data show that fine sediment input into the northern headwaters is persistent, while coarse sediment comes from the High Himalayas during the summer monsoon. A temporally matching landslide inventory similarly indicates the prominence of monsoon-driven hillslope mass wasting. Thus, mechanisms of sediment supply can leave strong traces in the fluvial caliber, which could project well beyond the mountain front and add to the variability of the sedimentary record of orogen erosion.}, language = {en} } @article{MartinNideverBeslaetal.2015, author = {Martin, Nicolas F. and Nidever, David L. and Besla, Gurtina and Olsen, Knut and Walker, Alistair R. and Vivas, A. Katherina and Gruendl, Robert A. and Kaleida, Catherine C. and Munoz, Ricardo R. and Blum, Robert D. and Saha, Abhijit and Conn, Blair C. and Bell, Eric F. and Chu, You-Hua and Cioni, Maria-Rosa L. and de Boer, Thomas J. L. and Gallart, Carme and Jin, Shoko and Kunder, Andrea and Majewski, Steven R. and Martinez-Delgado, David and Monachesi, Antonela and Monelli, Matteo and Monteagudo, Lara and Noel, Noelia E. D. and Olszewski, Edward W. and Stringfellow, Guy S. and van der Marel, Roeland P. and Zaritsky, Dennis}, title = {Hydra II: A faint and compact milky way dwarf galaxy found in the survey of the magellanic stellar history}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics ; Part 2, Letters}, volume = {804}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics ; Part 2, Letters}, number = {1}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {2041-8205}, doi = {10.1088/2041-8205/804/1/L5}, pages = {6}, year = {2015}, abstract = {We present the discovery of a new dwarf galaxy, Hydra II, found serendipitously within the data from the ongoing Survey of the Magellanic Stellar History conducted with the Dark Energy Camera on the Blanco 4 m Telescope. The new satellite is compact (r(h) = 68 +/- 11 pc) and faint (MV = -4.8 +/- 0.3), but well within the realm of dwarf galaxies. The stellar distribution of Hydra II in the color-magnitude diagram is well-described by a metal-poor ([Fe/H] = -2.2) and old (13 Gyr) isochrone and shows a distinct blue horizontal branch, some possible red clump stars, and faint stars that are suggestive of blue stragglers. At a heliocentric distance of 134 +/- 10 kpc, Hydra II is located in a region of the Galactic halo that models have suggested may host material from the leading arm of the Magellanic Stream. A comparison with N-body simulations hints that the new dwarf galaxy could be or could have been a satellite of the Magellanic Clouds.}, language = {en} } @article{MartinJungbluthNideveretal.2016, author = {Martin, Nicolas F. and Jungbluth, Valentin and Nidever, David L. and Bell, Eric F. and Besla, Gurtina and Blum, Robert D. and Cioni, Maria-Rosa L. and Conn, Blair C. and Kaleida, Catherine C. and Gallart, Carme and Jin, Shoko and Majewski, Steven R. and Martinez-Delgado, David and Monachesi, Antonela and Munoz, Ricardo R. and Noel, Noelia E. D. and Olsen, Knut and Stringfellow, Guy S. and van der Marel, Roeland P. and Vivas, A. Katherina and Walker, Alistair R. and Zaritsky, Dennis}, title = {SMASH 1: A VERY FAINT GLOBULAR CLUSTER DISRUPTING IN THE OUTER REACHES OF THE LMC?}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics ; Part 2, Letters}, volume = {830}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics ; Part 2, Letters}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {2041-8205}, doi = {10.3847/2041-8205/830/1/L10}, pages = {92 -- 98}, year = {2016}, language = {en} } @article{GlaeserBolteMartinetal.2013, author = {Gl{\"a}ser, Stefanie P. and Bolte, Kathrin and Martin, Karin and Busse, Hans-J{\"u}rgen and Grossart, Hans-Peter and K{\"a}mpfer, Peter and Gl{\"a}ser, Jens}, title = {Novosphingobium fuchskuhlense sp nov., isolated from the north-east basin of Lake Grosse Fuchskuhle}, series = {International journal of systematic and evolutionary microbiology}, volume = {63}, journal = {International journal of systematic and evolutionary microbiology}, publisher = {Society for General Microbiology}, address = {Reading}, issn = {1466-5026}, doi = {10.1099/ijs.0.043083-0}, pages = {586 -- 592}, year = {2013}, abstract = {A yellow pigmented, Gram-negative, rod-shaped bacterium designated FNE08-7(T) was isolated from subsurface water of the north-east basin of the bog lake Grosse Fuchskuhle (Brandenburg, Germany). A first analysis of the nearly full-length 16S rRNA gene sequence analysis including environmental 16S rRNA gene sequences derived from freshwater ecosystems showed that strain FNE08-7(T) is the first cultured representative, to our knowledge, of the freshwater tribe Novo-A2. Further analysis indicates highest 16S rRNA gene sequence similarities to the type strains of Novosphingobium stygium (98.0\%) and Novosphingobium taihuense (97.4\%) and between 94.0\% and 96.9\% sequence similarity to other members of the genus Novosphingobium. Reconstruction of phylogenetic trees showed that strain FNE08-7(T) formed a distinct cluster with the type strains of N. stygium and N. taihuense supported by high bootstrap values. DNA DNA hybridization of strain FNE08-7(T) with N. stygium SMCC B0712(T) and N. taihuense DSM 17507(T) revealed low similarity values of 18.4\% (reciprocal: 11.4\%) and 23.1\% (reciprocal: 54.2\%), respectively. The predominant fatty acid of the isolate is C-18:1 omega 7c (56.4\%) and two characteristic 2-hydroxy fatty acids, C-14:0 2-OH (16.5\%) and C-15:0 2-OH (3.3\%) occur. Ubiquinone Q-10 is the major respiratory quinone. The predominant polar lipids are phosphatidylethanolamine, phosphatidylmethylethanolamine, phosphatidylglycerol, sphingoglycolipid, phosphatidylcholine and minor amounts of diphosphatidylglycerol. Spermidine is the predominant polyamine. Characterization by genotypic, chemotaxonomic and phenotypic analysis indicate that strain FNE08-7(T) represents a novel species of the genus Novosphingobium within the Alphaproteobacteria. Therefore, we propose the species Novosphingobium fuchskuhlense sp. nov., with FNE08-7(T) (=DSM 25065(T)=CCM 7978(T)=CCUG 61508(T)) as the type strain.}, language = {en} } @article{BurattiThomasRoussosetal.2019, author = {Buratti, Bonnie J. and Thomas, P. C. and Roussos, Elias and Howett, Carly and Seiss, Martin and Hendrix, A. R. and Helfenstein, Paul and Brown, R. H. and Clark, R. N. and Denk, Tilmann and Filacchione, Gianrico and Hoffmann, Holger and Jones, Geraint H. and Khawaja, N. and Kollmann, Peter and Krupp, Norbert and Lunine, Jonathan and Momary, T. W. and Paranicas, Christopher and Postberg, Frank and Sachse, Manuel and Spahn, Frank and Spencer, John and Srama, Ralf and Albin, T. and Baines, K. H. and Ciarniello, Mauro and Economou, Thanasis and Hsu, Hsiang-Wen and Kempf, Sascha and Krimigis, Stamatios M. and Mitchell, Donald and Moragas-Klostermeyer, Georg and Nicholson, Philip D. and Porco, C. C. and Rosenberg, Heike and Simolka, Jonas and Soderblom, Laurence A.}, title = {Close Cassini flybys of Saturn's ring moons Pan, Daphnis, Atlas, Pandora, and Epimetheus}, series = {Science}, volume = {364}, journal = {Science}, number = {6445}, publisher = {American Assoc. for the Advancement of Science}, address = {Washington}, issn = {0036-8075}, doi = {10.1126/science.aat2349}, pages = {1053}, year = {2019}, abstract = {Saturn's main ring system is associated with a set of small moons that either are embedded within it or interact with the rings to alter their shape and composition. Five close flybys of the moons Pan, Daphnis, Atlas, Pandora, and Epimetheus were performed between December 2016 and April 2017 during the ring-grazing orbits of the Cassini mission. Data on the moons' morphology, structure, particle environment, and composition were returned, along with images in the ultraviolet and thermal infrared. We find that the optical properties of the moons' surfaces are determined by two competing processes: contamination by a red material formed in Saturn's main ring system and accretion of bright icy particles or water vapor from volcanic plumes originating on the moon Enceladus.}, language = {en} } @misc{CohenCampisanoArrowsmithetal.2016, author = {Cohen, Abby and Campisano, Christopher and Arrowsmith, J. Ramon and Asrat, Asfawossen and Behrensmeyer, A. K. and Deino, A. and Feibel, C. and Hill, A. and Johnson, R. and Kingston, J. and Lamb, Henry F. and Lowenstein, T. and Noren, A. and Olago, D. and Owen, Richard Bernhart and Potts, R. and Reed, Kate and Renaut, R. and Sch{\"a}bitz, Frank and Tiercelin, J.-J. and Trauth, Martin H. and Wynn, J. and Ivory, S. and Brady, K. and O'Grady, R. and Rodysill, J. and Githiri, J. and Russell, Joellen and Foerster, Verena and Dommain, Ren{\´e} and Rucina, J. S. and Deocampo, D. and Russell, J. and Billingsley, A. and Beck, C. and Dorenbeck, G. and Dullo, L. and Feary, D. and Garello, D. and Gromig, R. and Johnson, T. and Junginger, Annett and Karanja, M. and Kimburi, E. and Mbuthia, A. and McCartney, Tannis and McNulty, E. and Muiruri, V. and Nambiro, E. and Negash, E. W. and Njagi, D. and Wilson, J. N. and Rabideaux, N. and Raub, Timothy and Sier, Mark Jan and Smith, P. and Urban, J. and Warren, M. and Yadeta, M. and Yost, Chad and Zinaye, B.}, title = {The Hominin Sites and Paleolakes Drilling Project}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {611}, doi = {10.25932/publishup-41249}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-412498}, pages = {16}, year = {2016}, abstract = {The role that climate and environmental history may have played in influencing human evolution has been the focus of considerable interest and controversy among paleoanthropologists for decades. Prior attempts to understand the environmental history side of this equation have centered around the study of outcrop sediments and fossils adjacent to where fossil hominins (ancestors or close relatives of modern humans) are found, or from the study of deep sea drill cores. However, outcrop sediments are often highly weathered and thus are unsuitable for some types of paleoclimatic records, and deep sea core records come from long distances away from the actual fossil and stone tool remains. The Hominin Sites and Paleolakes Drilling Project (HSPDP) was developed to address these issues. The project has focused its efforts on the eastern African Rift Valley, where much of the evidence for early hominins has been recovered. We have collected about 2 km of sediment drill core from six basins in Kenya and Ethiopia, in lake deposits immediately adjacent to important fossil hominin and archaeological sites. Collectively these cores cover in time many of the key transitions and critical intervals in human evolutionary history over the last 4 Ma, such as the earliest stone tools, the origin of our own genus Homo, and the earliest anatomically modern Homo sapiens. Here we document the initial field, physical property, and core description results of the 2012-2014 HSPDP coring campaign.}, language = {en} } @misc{FinchBrakerReindletal.2019, author = {Finch, Nicolle L. and Braker, I. P. and Reindl, Nicole and Barstow, Martin A. and Casewell, Sarah L. and Burleigh, M. and Kupfer, Thomas and Kilkenny, D. and Geier, Stephan and Schaffenroth, Veronika and Bertolami Miller, Marcelo Miguel and Taubenberger, Stefan and Freudenthal, Joseph}, title = {Spectral Analysis of Binary Pre-white Dwarf Systems}, series = {Radiative signatures from the cosmos}, volume = {519}, journal = {Radiative signatures from the cosmos}, publisher = {Astronomical soc pacific}, address = {San Fransisco}, isbn = {978-1-58381-925-8}, issn = {1050-3390}, pages = {231 -- 238}, year = {2019}, abstract = {Short period double degenerate white dwarf (WD) binaries with periods of less than similar to 1 day are considered to be one of the likely progenitors of type Ia supernovae. These binaries have undergone a period of common envelope evolution. If the core ignites helium before the envelope is ejected, then a hot subdwarf remains prior to contracting into a WD. Here we present a comparison of two very rare systems that contain two hot subdwarfs in short period orbits. We provide a quantitative spectroscopic analysis of the systems using synthetic spectra from state-of-the-art non-LTE models to constrain the atmospheric parameters of the stars. We also use these models to determine the radial velocities, and thus calculate dynamical masses for the stars in each system.}, language = {en} }