@misc{vFrankenbergSeidlSchultheissetal.2012,
  author    = {v. Frankenberg, Jenny and Seidl, Rainer Ottis and Schultheiss, Corinna and Frank, Ulrike and Fuß, Sophia and Stefke, Michaela and Honekamp, Andrea and Winkler, Silke and J{\"a}ckel, Annemarie and Schindler, Wencke and Wenglarczyk, Anke and Weise, Stefanie and Heide, Judith and Stadie, Nicole and Schr{\"o}der, Astrid and Baer-Henney, Dinah and van de Vijver, Ruben and Sauerland, Uli and Yatsushiro, Kazuko and Sch{\"o}ppe, Doreen and Blatter, Kristine and Faust, Verena and J{\"a}ger, Dana and Artelt, Cordula and Schneider, Wolfgang and Stanat, Petra and Bruchm{\"u}ller, Wiebke and Sj{\"o}str{\"o}m, Saana and Sch{\"u}tz, Susann and Swietza, Romy and Zielina, Marie and Freymann, Marie and Hausmann, Nadin and K{\"o}ntopp, Isabelle and Liebig, Johanna and Schnell, Annemarie and Wegener, Viktoria and Heinemann, Steffi and Haensel, Diana and M{\"u}rbe, Dirk and Pomnitz, Patricia and Siegm{\"u}ller, Julia},
  title     = {Spektrum Patholinguistik = Schwerpunktthema: Schluck f{\"u}r Schluck: Dysphagietherapie bei Kindern und Erwachsenen},
  number    = {5},
  editor    = {Heide, Judith and Fritzsche, Tom and Meyer, Corinna B. and Ott, Susan},
  publisher = {Universit{\"a}tsverlag Potsdam},
  address   = {Potsdam},
  organization    = {Verband f{\"u}r Patholinguistik e.V.},
  isbn      = {978-3-86956-199-8},
  issn      = {1866-9433},
  doi       = {10.25932/publishup-5866},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-59877},
  year      = {2012},
  abstract  = {Das Herbsttreffen Patholinguistik wird seit 2007 j{\"a}hrlich vom Verband f{\"u}r Patholinguistik e.V. (vpl) durchgef{\"u}hrt. Die Jubil{\"a}umsveranstaltung am 19.11.2011 in Potsdam war nicht nur die 5. Auflage der Veranstaltung, sondern auch ein Fest zum 10j{\"a}hrigen Bestehen des Verbandes. Das Thema lautete "Schluck f{\"u}r Schluck: Dysphagietherapie bei Kindern und Erwachsenen". Im vorliegenden Tagungsband finden sich die Artikel der Hauptvortr{\"a}ge sowie die Abstracts der Posterpr{\"a}sentationen.},
  language  = {de}
}
@article{BorchertMockTomczaketal.2021,
  author    = {Borchert, Florian and Mock, Andreas and Tomczak, Aurelie and H{\"u}gel, Jonas and Alkarkoukly, Samer and Knurr, Alexander and Volckmar, Anna-Lena and Stenzinger, Albrecht and Schirmacher, Peter and Debus, J{\"u}rgen and J{\"a}ger, Dirk and Longerich, Thomas and Fr{\"o}hling, Stefan and Eils, Roland and Bougatf, Nina and Sax, Ulrich and Schapranow, Matthieu-Patrick},
  title     = {Correction to: Knowledge bases and software support for variant interpretation in precision oncology},
  series = {Briefings in bioinformatics},
  volume    = {22},
  journal   = {Briefings in bioinformatics},
  number    = {6},
  publisher = {Oxford Univ. Press},
  address   = {Oxford},
  issn      = {1467-5463},
  doi       = {10.1093/bib/bbab246},
  pages     = {1},
  year      = {2021},
  language  = {en}
}
@article{BorchertMockTomczaketal.2021,
  author    = {Borchert, Florian and Mock, Andreas and Tomczak, Aurelie and H{\"u}gel, Jonas and Alkarkoukly, Samer and Knurr, Alexander and Volckmar, Anna-Lena and Stenzinger, Albrecht and Schirmacher, Peter and Debus, J{\"u}rgen and J{\"a}ger, Dirk and Longerich, Thomas and Fr{\"o}hling, Stefan and Eils, Roland and Bougatf, Nina and Sax, Ulrich and Schapranow, Matthieu-Patrick},
  title     = {Knowledge bases and software support for variant interpretation in precision oncology},
  series = {Briefings in bioinformatics},
  volume    = {22},
  journal   = {Briefings in bioinformatics},
  number    = {6},
  publisher = {Oxford Univ. Press},
  address   = {Oxford},
  issn      = {1467-5463},
  doi       = {10.1093/bib/bbab134},
  pages     = {17},
  year      = {2021},
  abstract  = {Precision oncology is a rapidly evolving interdisciplinary medical specialty. Comprehensive cancer panels are becoming increasingly available at pathology departments worldwide, creating the urgent need for scalable cancer variant annotation and molecularly informed treatment recommendations. A wealth of mainly academia-driven knowledge bases calls for software tools supporting the multi-step diagnostic process. We derive a comprehensive list of knowledge bases relevant for variant interpretation by a review of existing literature followed by a survey among medical experts from university hospitals in Germany. In addition, we review cancer variant interpretation tools, which integrate multiple knowledge bases. We categorize the knowledge bases along the diagnostic process in precision oncology and analyze programmatic access options as well as the integration of knowledge bases into software tools. The most commonly used knowledge bases provide good programmatic access options and have been integrated into a range of software tools. For the wider set of knowledge bases, access options vary across different parts of the diagnostic process. Programmatic access is limited for information regarding clinical classifications of variants and for therapy recommendations. The main issue for databases used for biological classification of pathogenic variants and pathway context information is the lack of standardized interfaces. There is no single cancer variant interpretation tool that integrates all identified knowledge bases. Specialized tools are available and need to be further developed for different steps in the diagnostic process.},
  language  = {en}
}