@unpublished{AcharyaActisAghajanietal.2013,
  author    = {Acharya, B. S. and Actis, M. and Aghajani, T. and Agnetta, G. and Aguilar, J. and Aharonian, Felix A. and Ajello, M. and Akhperjanian, A. G. and Alcubierre, M. and Aleksic, J. and Alfaro, R. and Aliu, E. and Allafort, A. J. and Allan, D. and Allekotte, I. and Amato, E. and Anderson, J. and Ang{\"u}ner, Ekrem Oǧuzhan and Antonelli, L. A. and Antoranz, P. and Aravantinos, A. and Arlen, T. and Armstrong, T. and Arnaldi, H. and Arrabito, L. and Asano, K. and Ashton, T. and Asorey, H. G. and Awane, Y. and Baba, H. and Babic, A. and Baby, N. and Baehr, J. and Bais, A. and Baixeras, C. and Bajtlik, S. and Balbo, M. and Balis, D. and Balkowski, C. and Bamba, A. and Bandiera, R. and Barber, A. and Barbier, C. and Barcelo, M. and Barnacka, Anna and Barnstedt, J{\"u}rgen and Barres de Almeida, U. and Barrio, J. A. and Basili, A. and Basso, S. and Bastieri, D. and Bauer, C. and Baushev, Anton N. and Becerra Gonzalez, J. and Becherini, Yvonne and Bechtol, K. C. and Tjus, J. Becker and Beckmann, Volker and Bednarek, W. and Behera, B. and Belluso, M. and Benbow, W. and Berdugo, J. and Berger, K. and Bernard, F. and Bernardino, T. and Bernl{\"o}hr, K. and Bhat, N. and Bhattacharyya, S. and Bigongiari, C. and Biland, A. and Billotta, S. and Bird, T. and Birsin, E. and Bissaldi, E. and Biteau, Jonathan and Bitossi, M. and Blake, S. and Blanch Bigas, O. and Blasi, P. and Bobkov, A. A. and Boccone, V. and Boettcher, Markus and Bogacz, L. and Bogart, J. and Bogdan, M. and Boisson, Catherine and Boix Gargallo, J. and Bolmont, J. and Bonanno, G. and Bonardi, A. and Bonev, T. and Bonifacio, P. and Bonnoli, G. and Bordas, Pol and Borgland, A. W. and Borkowski, Janett and Bose, R. and Botner, O. and Bottani, A. and Bouchet, L. and Bourgeat, M. and Boutonnet, C. and Bouvier, A. and Brau-Nogue, S. and Braun, I. and Bretz, T. and Briggs, M. S. and Bringmann, T. and Brook, P. and Brun, Pierre and Brunetti, L. and Buanes, T. and Buckley, J. H. and Buehler, R. and Bugaev, V. and Bulgarelli, A. and Bulik, Tomasz and Busetto, G. and Buson, S. and Byrum, K. and Cailles, M. and Cameron, R. A. and Camprecios, J. and Canestrari, R. and Cantu, S. and Capalbi, M. and Caraveo, P. A. and Carmona, E. and Carosi, A. and Carr, John and Carton, P. H. and Casanova, Sabrina and Casiraghi, M. and Catalano, O. and Cavazzani, S. and Cazaux, S. and Cerruti, M. and Chabanne, E. and Chadwick, Paula M. and Champion, C. and Chen, Andrew and Chiang, J. and Chiappetti, L. and Chikawa, M. and Chitnis, V. R. and Chollet, F. and Chudoba, J. and Cieslar, M. and Cillis, A. N. and Cohen-Tanugi, J. and Colafrancesco, Sergio and Colin, P. and Calome, J. and Colonges, S. and Compin, M. and Conconi, P. and Conforti, V. and Connaughton, V. and Conrad, Jan and Contreras, J. L. and Coppi, P. and Corona, P. and Corti, D. and Cortina, J. and Cossio, L. and Costantini, H. and Cotter, G. and Courty, B. and Couturier, S. and Covino, S. and Crimi, G. and Criswell, S. J. and Croston, J. and Cusumano, G. and Dafonseca, M. and Dale, O. and Daniel, M. and Darling, J. and Davids, I. and Dazzi, F. and De Angelis, A. and De Caprio, V. and De Frondat, F. and de Gouveia Dal Pino, E. M. and de la Calle, I. and De La Vega, G. A. and Lopez, R. de los Reyes and De Lotto, B. and De Luca, A. and de Mello Neto, J. R. T. and de Naurois, M. and de Oliveira, Y. and de Ona Wilhelmi, E. and de Souza, V. and Decerprit, G. and Decock, G. and Deil, C. and Delagnes, E. and Deleglise, G. and Delgado, C. and Della Volpe, D. and Demange, P. and Depaola, G. and Dettlaff, A. and Di Paola, A. and Di Pierro, F. and Diaz, C. and Dick, J. and Dickherber, R. and Dickinson, H. and Diez-Blanco, V. and Digel, S. and Dimitrov, D. and Disset, G. and Djannati-Ata{\"i}, A. and Doert, M. and Dohmke, M. and Domainko, W. and Prester, Dijana Dominis and Donat, A. and Dorner, D. and Doro, M. and Dournaux, J-L. and Drake, G. and Dravins, D. and Drury, L. and Dubois, F. and Dubois, R. and Dubus, G. and Dufour, C. and Dumas, D. and Dumm, J. and Durand, D. and Dyks, J. and Dyrda, M. and Ebr, J. and Edy, E. and Egberts, Kathrin and Eger, P. and Einecke, S. and Eleftheriadis, C. and Elles, S. and Emmanoulopoulos, D. and Engelhaupt, D. and Enomoto, R. and Ernenwein, J-P and Errando, M. and Etchegoyen, A. and Evans, P. and Falcone, A. and Fantinel, D. and Farakos, K. and Farnier, C. and Fasola, G. and Favill, B. and Fede, E. and Federici, S. and Fegan, S. and Feinstein, F. and Ferenc, D. and Ferrando, P. and Fesquet, M. and Fiasson, A. and Fillin-Martino, E. and Fink, D. and Finley, C. and Finley, J. P. and Fiorini, M. and Firpo Curcoll, R. and Flores, H. and Florin, D. and Focke, W. and Foehr, C. and Fokitis, E. and Font, L. and Fontaine, G. and Fornasa, M. and Foerster, A. and Fortson, L. and Fouque, N. and Franckowiak, A. and Fransson, C. and Fraser, G. and Frei, R. and Albuquerque, I. F. M. and Fresnillo, L. and Fruck, C. and Fujita, Y. and Fukazawa, Y. and Fukui, Y. and Funk, S. and Gaebele, W. and Gabici, S. and Gabriele, R. and Gadola, A. and Galante, N. and Gall, D. and Gallant, Y. and Gamez-Garcia, J. and Garcia, B. and Garcia Lopez, R. and Gardiol, D. and Garrido, D. and Garrido, L. and Gascon, D. and Gaug, M. and Gaweda, J. and Gebremedhin, L. and Geffroy, N. and Gerard, L. and Ghedina, A. and Ghigo, M. and Giannakaki, E. and Gianotti, F. and Giarrusso, S. and Giavitto, G. and Giebels, B. and Gika, V. and Giommi, P. and Girard, N. and Giro, E. and Giuliani, A. and Glanzman, T. and Glicenstein, J. -F. and Godinovic, N. and Golev, V. and Gomez Berisso, M. and Gomez-Ortega, J. and Gonzalez, M. M. and Gonzalez, A. and Gonzalez, F. and Gonzalez Munoz, A. and Gothe, K. 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  title     = {Introducing the CTA concept},
  series = {Astroparticle physics},
  volume    = {43},
  journal   = {Astroparticle physics},
  number    = {2},
  publisher = {Elsevier},
  address   = {Amsterdam},
  organization    = {CTA Consortium},
  issn      = {0927-6505},
  doi       = {10.1016/j.astropartphys.2013.01.007},
  pages     = {3 -- 18},
  year      = {2013},
  abstract  = {The Cherenkov Telescope Array (CTA) is a new observatory for very high-energy (VHE) gamma rays. CTA has ambitions science goals, for which it is necessary to achieve full-sky coverage, to improve the sensitivity by about an order of magnitude, to span about four decades of energy, from a few tens of GeV to above 100 TeV with enhanced angular and energy resolutions over existing VHE gamma-ray observatories. An international collaboration has formed with more than 1000 members from 27 countries in Europe, Asia, Africa and North and South America. In 2010 the CTA Consortium completed a Design Study and started a three-year Preparatory Phase which leads to production readiness of CTA in 2014. In this paper we introduce the science goals and the concept of CTA, and provide an overview of the project.},
  language  = {en}
}
@article{ActisAgnettaAharonianetal.2011,
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A. and Bogacz, L. and Bogdan, M. and Boisson, Catherine and Boix Gargallo, J. and Bolmont, J. and Bonanno, G. and Bonardi, A. and Bonev, T. and Borkowski, Janett and Botner, O. and Bottani, A. and Bourgeat, M. and Boutonnet, C. and Bouvier, A. and Brau-Nogue, S. and Braun, I. and Bretz, T. and Briggs, M. S. and Brun, Pierre and Brunetti, L. and Buckley, H. and Bugaev, V. and Buehler, R. and Bulik, Tomasz and Busetto, G. and Buson, S. and Byrum, K. and Cailles, M. and Cameron, R. A. and Canestrari, R. and Cantu, S. and Carmona, E. and Carosi, A. and Carr, John and Carton, P. H. and Casiraghi, M. and Castarede, H. and Catalano, O. and Cavazzani, S. and Cazaux, S. and Cerruti, B. and Cerruti, M. and Chadwick, M. and Chiang, J. and Chikawa, M. and Cieslar, M. and Ciesielska, M. and Cillis, A. N. and Clerc, C. and Colin, P. and Colome, J. and Compin, M. and Conconi, P. and Connaughton, V. and Conrad, Jan and Contreras, J. 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C. and Maccarone, T. and Maier, G. and Majumdar, P. and Maltezos, S. and Malkiewicz, P. and Mana, C. and Manalaysay, A. and Maneva, G. and Mangano, A. and Manigot, P. and Marin, J. and Mariotti, M. and Markoff, S. and Martinez, G. and Martinez, M. and Mastichiadis, A. and Matsumoto, H. and Mattiazzo, S. and Mazin, D. and McComb, T. J. L. and McCubbin, N. and McHardy, I. and Medina, C. and Melkumyan, D. and Mendes, A. and Mertsch, P. and Meucci, M. and Michalowski, J. and Micolon, P. and Mineo, T. and Mirabal, N. and Mirabel, F. and Miranda, J. M. and Mirzoyan, R. and Mizuno, T. and Moal, B. and Moderski, R. and Molinari, E. and Monteiro, I. and Moralejo, A. and Morello, C. and Mori, K. and Motta, G. and Mottez, F. and Moulin, Emmanuel and Mukherjee, R. and Munar, P. and Muraishi, H. and Murase, K. and Murphy, A. Stj. and Nagataki, S. and Naito, T. and Nakamori, T. and Nakayama, K. and Naumann, C. L. and Naumann, D. and Nayman, P. and Nedbal, D. and Niedzwiecki, A. and Niemiec, J. and Nikolaidis, A. and Nishijima, K. and Nolan, S. J. and Nowak, N. and O'Brien, P. T. and Ochoa, I. and Ohira, Y. and Ohishi, M. and Ohka, H. and Okumura, A. and Olivetto, C. and Ong, R. A. and Orito, R. and Orr, M. and Osborne, J. P. and Ostrowski, M. and Otero, L. and Otte, A. N. and Ovcharov, E. and Oya, I. and Ozieblo, A. and Paiano, S. and Pallota, J. and Panazol, J. L. and Paneque, D. and Panter, M. and Paoletti, R. and Papyan, G. and Paredes, J. M. and Pareschi, G. and Parsons, R. D. and Arribas, M. Paz and Pedaletti, G. and Pepato, A. and Persic, M. and Petrucci, P. O. and Peyaud, B. and Piechocki, W. and Pita, S. and Pivato, G. and Platos, L. and Platzer, R. and Pogosyan, L. and Pohl, Martin and Pojmanski, G. and Ponz, J. D. and Potter, W. and Prandini, E. and Preece, R. and Prokoph, H. and Puehlhofer, G. and Punch, M. and Quel, E. and Quirrenbach, A. and Rajda, P. and Rando, R. and Rataj, M. and Raue, M. and Reimann, C. and Reimann, O. and Reimer, A. and Reimer, O. and Renaud, M. and Renner, S. and Reymond, J. -M. and Rhode, W. and Ribo, M. and Ribordy, M. and Rico, J. and Rieger, F. and Ringegni, P. and Ripken, J. and Ristori, P. and Rivoire, S. and Rob, L. and Rodriguez, S. and Roeser, U. and Romano, Patrizia and Romero, G. E. and Rosier-Lees, S. and Rovero, A. C. and Roy, F. and Royer, S. and Rudak, B. and Rulten, C. B. and Ruppel, J. and Russo, F. and Ryde, F. and Sacco, B. and Saggion, A. and Sahakian, V. and Saito, K. and Saito, T. and Sakaki, N. and Salazar, E. and Salini, A. and Sanchez, F. and Sanchez Conde, M. A. and Santangelo, A. and Santos, E. M. and Sanuy, A. and Sapozhnikov, L. and Sarkar, S. and Scalzotto, V. and Scapin, V. and Scarcioffolo, M. and Schanz, T. and Schlenstedt, S. and Schlickeiser, R. and Schmidt, T. and Schmoll, J. and Schroedter, M. and Schultz, C. and Schultze, J. and Schulz, A. and Schwanke, U. and Schwarzburg, S. and Schweizer, T. and Seiradakis, J. and Selmane, S. and Seweryn, K. and Shayduk, M. and Shellard, R. C. and Shibata, T. and Sikora, M. and Silk, J. and Sillanpaa, A. and Sitarek, J. and Skole, C. and Smith, N. and Sobczynska, D. and Sofo Haro, M. and Sol, H. and Spanier, F. and Spiga, D. and Spyrou, S. and Stamatescu, V. and Stamerra, A. and Starling, R. L. C. and Stawarz, L. and Steenkamp, R. and Stegmann, Christian and Steiner, S. and Stergioulas, N. and Sternberger, R. and Stinzing, F. and Stodulski, M. and Straumann, U. and Suarez, A. and Suchenek, M. and Sugawara, R. and Sulanke, K. H. and Sun, S. and Supanitsky, A. 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  title     = {Design concepts for the Cherenkov Telescope Array CTA an advanced facility for ground-based high-energy gamma-ray astronomy},
  series = {Experimental astronomy : an international journal on astronomical instrumentation and data analysis},
  volume    = {32},
  journal   = {Experimental astronomy : an international journal on astronomical instrumentation and data analysis},
  number    = {3},
  publisher = {Springer},
  address   = {Dordrecht},
  organization    = {CTA Consortium},
  issn      = {0922-6435},
  doi       = {10.1007/s10686-011-9247-0},
  pages     = {193 -- 316},
  year      = {2011},
  abstract  = {Ground-based gamma-ray astronomy has had a major breakthrough with the impressive results obtained using systems of imaging atmospheric Cherenkov telescopes. Ground-based gamma-ray astronomy has a huge potential in astrophysics, particle physics and cosmology. CTA is an international initiative to build the next generation instrument, with a factor of 5-10 improvement in sensitivity in the 100 GeV-10 TeV range and the extension to energies well below 100 GeV and above 100 TeV. CTA will consist of two arrays (one in the north, one in the south) for full sky coverage and will be operated as open observatory. The design of CTA is based on currently available technology. This document reports on the status and presents the major design concepts of CTA.},
  language  = {en}
}
@article{CharpinetBrassardFontaineetal.2019,
  author    = {Charpinet, St{\´e}phane and Brassard, P. and Fontaine, G. and Van Grootel, Valerie and Zong, Weika and Giammichele, N. and Heber, Ulrich and Bogn{\´a}r, Zs{\´o}fia and Geier, Stephan Alfred and Green, Elizabeth M. and Hermes, J. J. and Kilkenny, D. and Ostensen, R. H. and Pelisoli, Ingrid Domingos and Silvotti, R. and Telting, J. H. and Vuckovic, Maja and Worters, H. L. and Baran, Andrzej S. and Bell, Keaton J. and Bradley, Paul A. and Debes, J. H. and Kawaler, S. D. and Kolaczek-Szymanski, P. and Murphy, S. J. and Pigulski, A. and Sodor, A. and Uzundag, Murat and Handberg, R. and Kjeldsen, H. and Ricker, G. R. and Vanderspek, R. K.},
  title     = {TESS first look at evolved compact pulsators Discovery and asteroseismic probing of the g-mode hot B subdwarf pulsator EC 21494-7018},
  series = {Astronomy and astrophysics : an international weekly journal},
  volume    = {632},
  journal   = {Astronomy and astrophysics : an international weekly journal},
  publisher = {EDP Sciences},
  address   = {Les Ulis},
  issn      = {0004-6361},
  doi       = {10.1051/0004-6361/201935395},
  pages     = {23},
  year      = {2019},
  abstract  = {Context. The TESS satellite was launched in 2018 to perform high-precision photometry from space over almost the whole sky in a search for exoplanets orbiting bright stars. This instrument has opened new opportunities to study variable hot subdwarfs, white dwarfs, and related compact objects. Targets of interest include white dwarf and hot subdwarf pulsators, both carrying high potential for asteroseismology. Aims. We present the discovery and detailed asteroseismic analysis of a new g-mode hot B subdwarf (sdB) pulsator, EC 21494-7018 (TIC 278659026), monitored in TESS first sector using 120-s cadence. Methods. The TESS light curve was analyzed with standard prewhitening techniques, followed by forward modeling using our latest generation of sdB models developed for asteroseismic investigations. By simultaneously best-matching all the observed frequencies with those computed from models, we identified the pulsation modes detected and, more importantly, we determined the global parameters and structural configuration of the star. Results. The light curve analysis reveals that EC 21494-7018 is a sdB pulsator counting up to 20 frequencies associated with independent g-modes. The seismic analysis singles out an optimal model solution in full agreement with independent measurements provided by spectroscopy (atmospheric parameters derived from model atmospheres) and astrometry (distance evaluated from Gaia DR2 trigonometric parallax). Several key parameters of the star are derived. Its mass (0.391 +/- 0.009x2006;M-circle dot) is significantly lower than the typical mass of sdB stars and suggests that its progenitor has not undergone the He-core flash; therefore this progenitor could originate from a massive (greater than or similar to 2;M-circle dot) red giant, which is an alternative channel for the formation of sdBs. Other derived parameters include the H-rich envelope mass (0.0037 +/- 0.0010;M-circle dot), radius (0.1694 +/- 0.0081;R-circle dot), and luminosity (8.2 +/- 1.1;L-circle dot). The optimal model fit has a double-layered He+H composition profile, which we interpret as an incomplete but ongoing process of gravitational settling of helium at the bottom of a thick H-rich envelope. Moreover, the derived properties of the core indicate that EC 21494-7018 has burnt similar to 43\% (in mass) of its central helium and possesses a relatively large mixed core (M-core;=;0.198 +/- 0.010;M-circle dot), in line with trends already uncovered from other g-mode sdB pulsators analyzed with asteroseismology. Finally, we obtain for the first time an estimate of the amount of oxygen (in mass; X(O)(core) = 0.16(-0.05)(+0.13)X(O)core=0.16-0.05+0.13\$ X(mathrm{O})_{mathrm{core}}=0.16_{-0.05}<^>{+0.13} \$) produced at this stage of evolution by an helium-burning core. This result, along with the core-size estimate, is an interesting constraint that may help to narrow down the still uncertain C-12(alpha,;gamma)O-16 nuclear reaction rate.},
  language  = {en}
}
@article{VaidSomaniRussaketal.2020,
  author    = {Vaid, Akhil and Somani, Sulaiman and Russak, Adam J. and De Freitas, Jessica K. and Chaudhry, Fayzan F. and Paranjpe, Ishan and Johnson, Kipp W. and Lee, Samuel J. and Miotto, Riccardo and Richter, Felix and Zhao, Shan and Beckmann, Noam D. and Naik, Nidhi and Kia, Arash and Timsina, Prem and Lala, Anuradha and Paranjpe, Manish and Golden, Eddye and Danieletto, Matteo and Singh, Manbir and Meyer, Dara and O'Reilly, Paul F. and Huckins, Laura and Kovatch, Patricia and Finkelstein, Joseph and Freeman, Robert M. and Argulian, Edgar and Kasarskis, Andrew and Percha, Bethany and Aberg, Judith A. and Bagiella, Emilia and Horowitz, Carol R. and Murphy, Barbara and Nestler, Eric J. and Schadt, Eric E. and Cho, Judy H. and Cordon-Cardo, Carlos and Fuster, Valentin and Charney, Dennis S. and Reich, David L. and B{\"o}ttinger, Erwin and Levin, Matthew A. and Narula, Jagat and Fayad, Zahi A. and Just, Allan C. and Charney, Alexander W. and Nadkarni, Girish N. and Glicksberg, Benjamin S.},
  title     = {Machine learning to predict mortality and critical events in a cohort of patients with COVID-19 in New York City: model development and validation},
  series = {Journal of medical internet research : international scientific journal for medical research, information and communication on the internet ; JMIR},
  volume    = {22},
  journal   = {Journal of medical internet research : international scientific journal for medical research, information and communication on the internet ; JMIR},
  number    = {11},
  publisher = {Healthcare World},
  address   = {Richmond, Va.},
  issn      = {1439-4456},
  doi       = {10.2196/24018},
  pages     = {19},
  year      = {2020},
  abstract  = {Background: COVID-19 has infected millions of people worldwide and is responsible for several hundred thousand fatalities. The COVID-19 pandemic has necessitated thoughtful resource allocation and early identification of high-risk patients. However, effective methods to meet these needs are lacking. Objective: The aims of this study were to analyze the electronic health records (EHRs) of patients who tested positive for COVID-19 and were admitted to hospitals in the Mount Sinai Health System in New York City; to develop machine learning models for making predictions about the hospital course of the patients over clinically meaningful time horizons based on patient characteristics at admission; and to assess the performance of these models at multiple hospitals and time points. Methods: We used Extreme Gradient Boosting (XGBoost) and baseline comparator models to predict in-hospital mortality and critical events at time windows of 3, 5, 7, and 10 days from admission. Our study population included harmonized EHR data from five hospitals in New York City for 4098 COVID-19-positive patients admitted from March 15 to May 22, 2020. The models were first trained on patients from a single hospital (n=1514) before or on May 1, externally validated on patients from four other hospitals (n=2201) before or on May 1, and prospectively validated on all patients after May 1 (n=383). Finally, we established model interpretability to identify and rank variables that drive model predictions. Results: Upon cross-validation, the XGBoost classifier outperformed baseline models, with an area under the receiver operating characteristic curve (AUC-ROC) for mortality of 0.89 at 3 days, 0.85 at 5 and 7 days, and 0.84 at 10 days. XGBoost also performed well for critical event prediction, with an AUC-ROC of 0.80 at 3 days, 0.79 at 5 days, 0.80 at 7 days, and 0.81 at 10 days. In external validation, XGBoost achieved an AUC-ROC of 0.88 at 3 days, 0.86 at 5 days, 0.86 at 7 days, and 0.84 at 10 days for mortality prediction. Similarly, the unimputed XGBoost model achieved an AUC-ROC of 0.78 at 3 days, 0.79 at 5 days, 0.80 at 7 days, and 0.81 at 10 days. Trends in performance on prospective validation sets were similar. At 7 days, acute kidney injury on admission, elevated LDH, tachypnea, and hyperglycemia were the strongest drivers of critical event prediction, while higher age, anion gap, and C-reactive protein were the strongest drivers of mortality prediction. Conclusions: We externally and prospectively trained and validated machine learning models for mortality and critical events for patients with COVID-19 at different time horizons. These models identified at-risk patients and uncovered underlying relationships that predicted outcomes.},
  language  = {en}
}
@article{RahmaniWendtSrianandetal.2013,
  author    = {Rahmani, H. and Wendt, Martin and Srianand, R. and Noterdaeme, P. and Petitjean, P. and Molaro, P. and Whitmore, J. B. and Murphy, M. T. and Centurion, Martin and Fathivavsari, H. and D'Odorico, S. and Evans, T. M. and Levshakov, S. A. and Lopez, S. and Martins, C. J. A. P. and Reimers, D. and Vladilo, G.},
  title     = {The UVES large program for testing fundamental physics - II. Constraints on a change in mu towards quasar HE 0027-1836},
  series = {Monthly notices of the Royal Astronomical Society},
  volume    = {435},
  journal   = {Monthly notices of the Royal Astronomical Society},
  number    = {1},
  publisher = {Oxford Univ. Press},
  address   = {Oxford},
  issn      = {0035-8711},
  doi       = {10.1093/mnras/stt1356},
  pages     = {861 -- 878},
  year      = {2013},
  abstract  = {We present an accurate analysis of the H-2 absorption lines from the z(abs) similar to 2.4018 damped Ly alpha system towards HE 0027-1836 observed with the Very Large Telescope Ultraviolet and Visual Echelle Spectrograph (VLT/UVES) as a part of the European Southern Observatory Large Programme 'The UVES large programme for testing fundamental physics' to constrain the variation of proton-to-electron mass ratio, mu m(p)/m(e). We perform cross-correlation analysis between 19 individual exposures taken over three years and the combined spectrum to check the wavelength calibration stability. We notice the presence of a possible wavelength-dependent velocity drift especially in the data taken in 2012. We use available asteroids spectra taken with UVES close to our observations to confirm and quantify this effect. We consider single-and two-component Voigt profiles to model the observed H-2 absorption profiles. We use both linear regression analysis and Voigt profile fitting where Delta mu/mu is explicitly considered as an additional fitting parameter. The two-component model is marginally favoured by the statistical indicators and we get Delta mu/mu = -2.5 +/- 8.1(stat) +/- 6.2(sys) ppm. When we apply the correction to the wavelength-dependent velocity drift, we find Delta mu/mu = -7.6 +/- 8.1(stat) +/- 6.3(sys) ppm. It will be important to check the extent to which the velocity drift we notice in this study is present in UVES data used for previous Delta mu/mu measurements.},
  language  = {en}
}
@article{MolaroCenturionWhitmoreetal.2013,
  author    = {Molaro, P. and Centurion, Martin and Whitmore, J. B. and Evans, T. M. and Murphy, M. T. and Agafonova, I. I. and Bonifacio, P. and D'Odorico, S. and Levshakov, S. A. and Lopez, S. and Martins, C. J. A. P. and Petitjean, P. and Rahmani, H. and Reimers, D. and Srianand, R. and Vladilo, G. and Wendt, Martin},
  title     = {The UVES Large Program for testing fundamental physics I. Bounds on a change in alpha towards quasar HE 221-2818},
  series = {Astronomy and astrophysics : an international weekly journal},
  volume    = {555},
  journal   = {Astronomy and astrophysics : an international weekly journal},
  number    = {4},
  publisher = {EDP Sciences},
  address   = {Les Ulis},
  issn      = {0004-6361},
  doi       = {10.1051/0004-6361/201321351},
  pages     = {17},
  year      = {2013},
  abstract  = {Context. Absorption-line systems detected in quasar spectra can be used to compare the value of the fine-structure constant, alpha, measured today on Earth with its value in distant galaxies. In recent years, some evidence has emerged of small temporal and also spatial variations in alpha on cosmological scales. These variations may reach a fractional level of approximate to 10 ppm (parts per million). Aims. To test these claims we are conducting a Large Program of observations with the Very Large Telescope's Ultraviolet and Visual Echelle Spectrograph (UVES), and are obtaining high-resolution (R approximate to 60 000) and high signal-to-noise ratio (S/N approximate to 100) UVES spectra calibrated specifically for this purpose. Here we analyse the first complete quasar spectrum from this programme, that of HE 2217-2818. Methods. We applied the many multiplet method to measure alpha in five absorption systems towards this quasar: z(abs) = 0.7866, 0.9424, 1.5558, 1.6279, and 1.6919. Results. The most precise result is obtained for the absorber at z(abs) = 1.6919 where 3 Fe II transitions and Al II lambda 1670 have high S/N and provide a wide range of sensitivities to alpha. The absorption profile is complex with several very narrow features, and it requires 32 velocity components to be fitted to the data. We also conducted a range of tests to estimate the systematic error budget. Our final result for the relative variation in alpha in this system is Delta alpha/alpha = +1.3 +/- 2.4(stat) +/- 1.0(sys) ppm. This is one of the tightest current bounds on alpha-variation from an individual absorber. A second, separate approach to the data reduction, calibration, and analysis of this system yielded a slightly different result of -3.8 +/- 2.1(stat) ppm, possibly suggesting a larger systematic error component than our tests indicated. This approach used an additional 3 Fe II transitions, parts of which were masked due to contamination by telluric features. Restricting this analysis to the Fe II transitions alone and using a modified absorption profile model gave a result that is consistent with the first approach, Delta alpha/alpha = +1.1 +/- 2.6(stat) ppm. The four other absorbers have simpler absorption profiles, with fewer and broader features, and offer transitions with a narrower range of sensitivities to alpha. They therefore provide looser bounds on Delta alpha/alpha at the greater than or similar to 10 ppm precision level. Conclusions. The absorbers towards quasar HE 2217-2818 reveal no evidence of any variation in alpha at the 3-ppm precision level (1 sigma confidence). If the recently reported 10-ppm dipolar variation in alpha across the sky is correct, the expectation at this sky position is (3.2-5.4) +/- 1.7 ppm depending on dipole model used. Our constraint of Delta alpha/alpha = +1.3 +/- 2.4(stat) +/- 1.0(sys) ppm is not inconsistent with this expectation.},
  language  = {en}
}
@article{BonifacioRahmaniWhitmoreetal.2014,
  author    = {Bonifacio, P. and Rahmani, H. and Whitmore, J. B. and Wendt, Martin and Centurion, Martin and Molaro, P. and Srianand, R. and Murphy, M. T. and Petitjean, P. and Agafonova, I. I. and Evans, T. M. and Levshakov, S. A. and Lopez, S. and Martins, C. J. A. P. and Reimers, D. and Vladilo, G.},
  title     = {Fundamental constants and high-resolution spectroscopy},
  series = {Astronomische Nachrichten = Astronomical notes},
  volume    = {335},
  journal   = {Astronomische Nachrichten = Astronomical notes},
  number    = {1},
  publisher = {Wiley-VCH},
  address   = {Weinheim},
  issn      = {0004-6337},
  doi       = {10.1002/asna.201312005},
  pages     = {83 -- 91},
  year      = {2014},
  language  = {en}
}
@article{RothwellMurphyAleksandrovaetal.2020,
  author    = {Rothwell, Joseph A. and Murphy, Neil and Aleksandrova, Krasimira and Schulze, Matthias B. and Bešević, Jelena and Kliemann, Nathalie and Jenab, Mazda and Ferrari, Pietro and Achaintre, David and Gicquiau, Audrey and Vozar, B{\´e}atrice and Scalbert, Augustin and Huybrechts, Inge and Freisling, Heinz and Prehn, Cornelia and Adamski, Jerzy and Cross, Amanda J. and Pala, Valeria Maria and Boutron-Ruault, Marie-Christine and Dahm, Christina C. and Overvad, Kim and Gram, Inger Torhild and Sandanger, Torkjel M. and Skeie, Guri and Jakszyn, Paula and Tsilidis, Kostas K. and Hughes, David J. and van Guelpen, Bethany and Bod{\´e}n, Stina and S{\´a}nchez, Maria-Jos{\´e} and Schmidt, Julie A. and Katzke, Verena and K{\"u}hn, Tilman and Colorado-Yohar, Sandra and Tumino, Rosario and Bueno-de-Mesquita, Bas and Vineis, Paolo and Masala, Giovanna and Panico, Salvatore and Eriksen, Anne Kirstine and Tj{\o}nneland, Anne and Aune, Dagfinn and Weiderpass, Elisabete and Severi, Gianluca and Chaj{\`e}s, V{\´e}ronique and Gunter, Marc J.},
  title     = {Metabolic signatures of healthy lifestyle patterns and colorectal cancer risk in a European cohort},
  series = {Clinical gastroenterology and hepatology},
  volume    = {20},
  journal   = {Clinical gastroenterology and hepatology},
  publisher = {Elsevier},
  address   = {New York, NY},
  issn      = {1542-3565},
  doi       = {10.1016/j.cgh.2020.11.045},
  pages     = {E1061 -- E1082},
  year      = {2020},
  abstract  = {BACKGROUND \& AIMS: Colorectal cancer risk can be lowered by adherence to the World Cancer Research Fund/American Institute for Cancer Research (WCRF/AICR) guidelines. We derived metabolic signatures of adherence to these guidelines and tested their associations with colorectal cancer risk in the European Prospective Investigation into Cancer and Nutrition cohort. METHODS: Scores reflecting adherence to the WCRF/AICR recommendations (scale, 1-5) were calculated from participant data on weight maintenance, physical activity, diet, and alcohol among a discovery set of 5738 cancer-free European Prospective Investigation into Cancer and Nutrition participants with metabolomics data. Partial least-squares regression was used to derive fatty acid and endogenous metabolite signatures of the WCRF/AICR score in this group. In an independent set of 1608 colorectal cancer cases and matched controls, odds ratios (ORs) and 95\% CIs were calculated for colorectal cancer risk per unit increase in WCRF/AICR score and per the corresponding change in metabolic signatures using multivariable conditional logistic regression. RESULTS: Higher WCRF/AICR scores were characterized by metabolic signatures of increased odd-chain fatty acids, serine, glycine, and specific phosphatidylcholines. Signatures were inversely associated more strongly with colorectal cancer risk (fatty acids: OR, 0.51 per unit increase; 95\% CI, 0.29-0.90; endogenous metabolites: OR, 0.62 per unit change; 95\% CI, 0.50-0.78) than the WCRF/AICR score (OR, 0.93 per unit change; 95\% CI, 0.86-1.00) overall. Signature associations were stronger in male compared with female participants. CONCLUSIONS: Metabolite profiles reflecting adherence to WCRF/AICR guidelines and additional lifestyle or biological risk factors were associated with colorectal cancer. Measuring a specific panel of metabolites representative of a healthy or unhealthy lifestyle may identify strata of the population at higher risk of colorectal cancer.},
  language  = {en}
}
@article{ChanJaladankiSomanietal.2021,
  author    = {Chan, Lili and Jaladanki, Suraj K. and Somani, Sulaiman and Paranjpe, Ishan and Kumar, Arvind and Zhao, Shan and Kaufman, Lewis and Leisman, Staci and Sharma, Shuchita and He, John Cijiang and Murphy, Barbara and Fayad, Zahi A. and Levin, Matthew A. and B{\"o}ttinger, Erwin and Charney, Alexander W. and Glicksberg, Benjamin and Coca, Steven G. and Nadkarni, Girish N.},
  title     = {Outcomes of patients on maintenance dialysis hospitalized with COVID-19},
  series = {Clinical journal of the American Society of Nephrology : CJASN},
  volume    = {16},
  journal   = {Clinical journal of the American Society of Nephrology : CJASN},
  number    = {3},
  publisher = {American Society of Nephrology},
  address   = {Washington},
  organization    = {Mount Sinai Covid I},
  issn      = {1555-9041},
  doi       = {10.2215/CJN.12360720},
  pages     = {452 -- 455},
  year      = {2021},
  language  = {en}
}
@misc{HiggsHarrisHegeretal.2018,
  author    = {Higgs, Eric S. and Harris, Jim A. and Heger, Tina and Hobbs, Richard J. and Murphy, Stephen D. and Suding, Katharine N.},
  title     = {Keep ecological restoration open and flexible},
  series = {Nature Ecology \& Evolution},
  volume    = {2},
  journal   = {Nature Ecology \& Evolution},
  number    = {4},
  publisher = {Nature Publ. Group},
  address   = {London},
  issn      = {2397-334X},
  doi       = {10.1038/s41559-018-0483-9},
  pages     = {580 -- 580},
  year      = {2018},
  language  = {en}
}
@article{EvansMurphyWhitmoreetal.2014,
  author    = {Evans, T. M. and Murphy, M. T. and Whitmore, J. B. and Misawa, T. and Centurion, Martin and Lopez, S. and Martins, C. J. A. P. and Molaro, P. and Petitjean, P. and Rahmani, H. and Srianand, R. and Wendt, Martin},
  title     = {The UVES Large Program for testing fundamental physics - III. Constraints on the fine-structure constant from three telescopes},
  series = {Monthly notices of the Royal Astronomical Society},
  volume    = {445},
  journal   = {Monthly notices of the Royal Astronomical Society},
  number    = {1},
  publisher = {Oxford Univ. Press},
  address   = {Oxford},
  issn      = {0035-8711},
  doi       = {10.1093/mnras/stu1754},
  pages     = {128 -- 150},
  year      = {2014},
  language  = {en}
}
@article{BoucheFinleySchroetteretal.2016,
  author    = {Bouche, Nicolas and Finley, H. and Schroetter, I. and Murphy, M. T. and Richter, Philipp and Bacon, Roland and Contini, Thierry and Richard, J. and Wendt, Martin and Kamann, S. and Epinat, Benoit and Cantalupo, Sebastiano and Straka, Lorrie A. and Schaye, Joop and Martin, C. L. and Peroux, C. and Wisotzki, Lutz and Soto, K. and Lilly, S. and Carollo, C. M. and Brinchmann, Jarle and Kollatschny, W.},
  title     = {POSSIBLE SIGNATURES OF A COLD-FLOW DISK FROM MUSE USING A z similar to 1 GALAXY-QUASAR PAIR TOWARD SDSS J1422-0001},
  series = {The astrophysical journal : an international review of spectroscopy and astronomical physics},
  volume    = {820},
  journal   = {The astrophysical journal : an international review of spectroscopy and astronomical physics},
  publisher = {IOP Publ. Ltd.},
  address   = {Bristol},
  issn      = {0004-637X},
  doi       = {10.3847/0004-637X/820/2/121},
  pages     = {1872 -- 1882},
  year      = {2016},
  abstract  = {We use a background quasar to detect the presence of circumgalactic gas around a z = 0.91 low-mass star-forming galaxy. Data from the new Multi Unit Spectroscopic Explorer (MUSE) on the Very Large Telescope show that the galaxy has a dust-corrected star formation rate (SFR) of 4.7 +/- 2.0. M-circle dot yr(-1), with no companion down to 0.22 M-circle dot yr(-1) (5 sigma) within 240 h(-1) kpc ("30"). Using a high-resolution spectrum of the background quasar, which is fortuitously aligned with the galaxy major axis (with an azimuth angle alpha of only 15 degrees), we find, in the gas kinematics traced by low-ionization lines, distinct signatures consistent with those expected for a "cold-flow disk" extending at least 12 kpc (3 x R-1/2). We estimate the mass accretion rate M-in to be at least two to three times larger than the SFR, using the geometric constraints from the IFU data and the H (I) column density of log N-H (I)/cm(-2) similar or equal to 20.4 obtained from a Hubble Space Telescope/COS near-UV spectrum. From a detailed analysis of the low-ionization lines (e.g., Zn II, Cr II, Ti II, MnII, Si II), the accreting material appears to be enriched to about 0.4 Z(circle dot) (albeit with large uncertainties: log Z/Z(circle dot) = -0.4 +/- 0.4), which is comparable to the galaxy metallicity (12 + log O/H = 8.7 +/- 0.2), implying a large recycling fraction from past outflows. Blueshifted Mg II and Fe II absorptions in the galaxy spectrum from the MUSE data reveal the presence of an outflow. The Mg II and Fe II absorption line ratios indicate emission infilling due to scattering processes, but the MUSE data do not show any signs of fluorescent Fe II* emission.},
  language  = {en}
}
@inproceedings{CassinelliIgnaceWaldronetal.2007,
  author    = {Cassinelli, Joseph P. and Ignace, R. and Waldron, W. and Cho, J. and Murphy, N. and Lazarian, A.},
  title     = {X-ray line emission produced in clump bow shocks},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-18057},
  year      = {2007},
  abstract  = {We summarize Chandra observations of the emission line profiles from 17 OB stars. The lines tend to be broad and unshifted. The forbidden/intercombination line ratios arising from Helium-like ions provide radial distance information for the X-ray emission sources, while the H-like to He-like line ratios provide X-ray temperatures, and thus also source temperature versus radius distributions. OB stars usually show power law differential emission measure distributions versus temperature. In models of bow shocks, we find a power law differential emission measure, a wide range of ion stages, and the bow shock flow around the clumps provides transverse velocities comparable to HWHM values. We find that the bow shock results for the line profile properties, consistent with the observations of X-ray line emission for a broad range of OB star properties.},
  language  = {en}
}
@article{SpringerSignorePaijmansetal.2015,
  author    = {Springer, Mark S. and Signore, Anthony V. and Paijmans, Johanna L. A. and Velez-Juarbe, Jorge and Domning, Daryl P. and Bauer, Cameron E. and He, Kai and Crerar, Lorelei and Campos, Paula F. and Murphy, William J. and Meredith, Robert W. and Gatesy, John and Willerslev, Eske and MacPhee, Ross D. E. and Hofreiter, Michael and Campbell, Kevin L.},
  title     = {Interordinal gene capture, the phylogenetic position of Steller's sea cow based on molecular and morphological data, and the macroevolutionary history of Sirenia},
  series = {Molecular phylogenetics and evolution},
  volume    = {91},
  journal   = {Molecular phylogenetics and evolution},
  publisher = {Elsevier},
  address   = {San Diego},
  issn      = {1055-7903},
  doi       = {10.1016/j.ympev.2015.05.022},
  pages     = {178 -- 193},
  year      = {2015},
  abstract  = {The recently extinct (ca. 1768) Steller's sea cow (Hydrodamalis gigas) was a large, edentulous North Pacific sirenian. The phylogenetic affinities of this taxon to other members of this clade, living and extinct, are uncertain based on previous morphological and molecular studies. We employed hybridization capture methods and second generation sequencing technology to obtain >30 kb of exon sequences from 26 nuclear genes for both H. gigas and Dugong dugon. We also obtained complete coding sequences for the tooth-related enamelin (ENAM) gene. Hybridization probes designed using dugong and manatee sequences were both highly effective in retrieving sequences from H. gigas (mean = 98.8\% coverage), as were more divergent probes for regions of ENAM (99.0\% coverage) that were designed exclusively from a proboscidean (African elephant) and a hyracoid (Cape hyrax). New sequences were combined with available sequences for representatives of all other afrotherian orders. We also expanded a previously published morphological matrix for living and fossil Sirenia by adding both new taxa and nine new postcranial characters. Maximum likelihood and parsimony analyses of the molecular data provide robust support for an association of H. gigas and D. dugon to the exclusion of living trichechids (manatees). Parsimony analyses of the morphological data also support the inclusion of H. gigas in Dugongidae with D. dugon and fossil dugongids. Timetree analyses based on calibration density approaches with hard- and soft-bounded constraints suggest that H. gigas and D. dugon diverged in the Oligocene and that crown sirenians last shared a common ancestor in the Eocene. The coding sequence for the ENAM gene in H. gigas does not contain frameshift mutations or stop codons, but there is a transversion mutation (AG to CG) in the acceptor splice site of intron 2. This disruption in the edentulous Steller's sea cow is consistent with previous studies that have documented inactivating mutations in tooth-specific loci of a variety of edentulous and enamelless vertebrates including birds, turtles, aardvarks, pangolins, xenarthrans, and baleen whales. Further, branch-site dN/dS analyses provide evidence for positive selection in ENAM on the stem dugongid branch where extensive tooth reduction occurred, followed by neutral evolution on the Hydrodamalis branch. Finally, we present a synthetic evolutionary tree for living and fossil sirenians showing several key innovations in the history of this clade including character state changes that parallel those that occurred in the evolutionary history of cetaceans. (C) 2015 Elsevier Inc. All rights reserved.},
  language  = {en}
}
@article{ChanChaudharySahaetal.2021,
  author    = {Chan, Lili and Chaudhary, Kumardeep and Saha, Aparna and Chauhan, Kinsuk and Vaid, Akhil and Zhao, Shan and Paranjpe, Ishan and Somani, Sulaiman and Richter, Felix and Miotto, Riccardo and Lala, Anuradha and Kia, Arash and Timsina, Prem and Li, Li and Freeman, Robert and Chen, Rong and Narula, Jagat and Just, Allan C. and Horowitz, Carol and Fayad, Zahi and Cordon-Cardo, Carlos and Schadt, Eric and Levin, Matthew A. and Reich, David L. and Fuster, Valentin and Murphy, Barbara and He, John C. and Charney, Alexander W. and B{\"o}ttinger, Erwin and Glicksberg, Benjamin and Coca, Steven G. and Nadkarni, Girish N.},
  title     = {AKI in hospitalized patients with COVID-19},
  series = {Journal of the American Society of Nephrology : JASN},
  volume    = {32},
  journal   = {Journal of the American Society of Nephrology : JASN},
  number    = {1},
  publisher = {American Society of Nephrology},
  address   = {Washington},
  organization    = {Mt Sinai COVID Informatics Ct},
  issn      = {1046-6673},
  doi       = {10.1681/ASN.2020050615},
  pages     = {151 -- 160},
  year      = {2021},
  abstract  = {Background: Early reports indicate that AKI is common among patients with coronavirus disease 2019 (COVID-19) and associatedwith worse outcomes. However, AKI among hospitalized patients with COVID19 in the United States is not well described. Methods: This retrospective, observational study involved a review of data from electronic health records of patients aged >= 18 years with laboratory-confirmed COVID-19 admitted to the Mount Sinai Health System from February 27 to May 30, 2020. We describe the frequency of AKI and dialysis requirement, AKI recovery, and adjusted odds ratios (aORs) with mortality. Results: Of 3993 hospitalized patients with COVID-19, AKI occurred in 1835 (46\%) patients; 347 (19\%) of the patientswith AKI required dialysis. The proportionswith stages 1, 2, or 3 AKIwere 39\%, 19\%, and 42\%, respectively. A total of 976 (24\%) patients were admitted to intensive care, and 745 (76\%) experienced AKI. Of the 435 patients with AKI and urine studies, 84\% had proteinuria, 81\% had hematuria, and 60\% had leukocyturia. Independent predictors of severe AKI were CKD, men, and higher serum potassium at admission. In-hospital mortality was 50\% among patients with AKI versus 8\% among those without AKI (aOR, 9.2; 95\% confidence interval, 7.5 to 11.3). Of survivors with AKI who were discharged, 35\% had not recovered to baseline kidney function by the time of discharge. An additional 28 of 77 (36\%) patients who had not recovered kidney function at discharge did so on posthospital follow-up. Conclusions: AKI is common among patients hospitalized with COVID-19 and is associated with high mortality. Of all patients with AKI, only 30\% survived with recovery of kidney function by the time of discharge.},
  language  = {en}
}