@misc{VuilleminFrieseAlawietal.2016, author = {Vuillemin, Aur{\`e}le and Friese, Andr{\´e} and Alawi, Mashal and Henny, Cynthia and Nomosatryo, Sulung and Wagner, Dirk and Crowe, Sean A. and Kallmeyer, Jens}, title = {Geomicrobiological features of ferruginous sediments from Lake Towuti, Indonesia}, series = {Frontiers in microbiology}, journal = {Frontiers in microbiology}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407312}, pages = {16}, year = {2016}, abstract = {Lake Towuti is a tectonic basin, surrounded by ultramafic rocks. Lateritic soils form through weathering and deliver abundant iron (oxy)hydroxides but very little sulfate to the lake and its sediment. To characterize the sediment biogeochemistry, we collected cores at three sites with increasing water depth and decreasing bottom water oxygen concentrations. Microbial cell densities were highest at the shallow site a feature we attribute to the availability of labile organic matter (OM) and the higher abundance of electron acceptors due to oxic bottom water conditions. At the two other sites, OM degradation and reduction processes below the oxycline led to partial electron acceptor depletion. Genetic information preserved in the sediment as extracellular DNA (eDNA) provided information on aerobic and anaerobic heterotrophs related to Nitrospirae. Chloroflexi, and Therrnoplasmatales. These taxa apparently played a significant role in the degradation of sinking OM. However, eDNA concentrations rapidly decreased with core depth. Despite very low sulfate concentrations, sulfate-reducing bacteria were present and viable in sediments at all three sites, as confirmed by measurement of potential sulfate reduction rates. Microbial community fingerprinting supported the presence of taxa related to Deltaproteobacteria and Firmicutes with demonstrated capacity for iron and sulfate reduction. Concomitantly, sequences of Ruminococcaceae, Clostridiales, and Methanornicrobiales indicated potential for fermentative hydrogen and methane production. Such first insights into ferruginous sediments showed that microbial populations perform successive metabolisms related to sulfur, iron, and methane. In theory, iron reduction could reoxidize reduced sulfur compounds and desorb OM from iron minerals to allow remineralization to methane. Overall, we found that biogeochemical processes in the sediments can be linked to redox differences in the bottom waters of the three sites, like oxidant concentrations and the supply of labile OM. At the scale of the lacustrine record, our geomicrobiological study should provide a means to link the extant subsurface biosphere to past environments.}, language = {en} } @phdthesis{Nomosatryo2023, author = {Nomosatryo, Sulung}, title = {Biogeochemical characteristics of a tropical lake}, doi = {10.25932/publishup-59400}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-594006}, school = {Universit{\"a}t Potsdam}, pages = {xix, 175}, year = {2023}, abstract = {Biogeochemical analyses of lacustrine environments are well-established methods that allow exploring and understanding complex systems in the lake ecosystem. However, most were conducted in temperate lakes controlled by entirely different physical conditions than in tropical climates. The most important difference between the temperate and tropical lakes is lacking seasonal temperature fluctuations in the latter, which leads to a stable temperature gradient in the water column. Thus, the water column in tropical latitudes generally is void of perturbations that can be seen in their temperate counterparts. Permanent stratification in the water column provides optimal conditions for intact sedimentation. The geochemical processes in the water column and the weathering process in the distinct lithology in the catchment leads to the different biogeochemical characteristic in the sediment. Conducting a biogeochemical study in this lake sediment, especially in the Sediment Water Interface (SWI) helps reveal the sedimentation and diagenetic process records influenced by the internal or external loading. Lake Sentani, the study area, is one of the thousands of lakes in Indonesia and located in the Papua province. This tropical lake has a unique feature, as it consists of four interconnected sub-basins with different water depths. More importantly, its catchment is comprised of various different lithologies. Hence, its lithological characteristics are highly diverse, and range from mafic and ultramafic rocks to clastic sediment and carbonates. Each sub-basin receives a distinct sediment input. Equally important, besides the natural loading, Lake Sentani is also influenced by anthropogenic input. Previous studies have elaborated that there is an increase in population growth rate around the lake which has direct consequences on eutrophication. Considering these factors, the government of The Republic of Indonesia put Lake Sentani on the list of national priority lakes for restoration. This thesis aims to develop a fundamental understanding of Lake Sentani's sedimentary geochemistry and geomicrobiology with a special focus on the effects of different lithologies and anthropogenic pressures in the catchment area. We conducted geochemical and geomicrobiology research on Lake Sentani to meet this objective. We investigated geochemical characteristics in the water column, porewater, and sediment core of the four sub-basins. Additional to direct investigations of the lake itself, we also studied the sediments in the tributary rivers, of which some are ephemeral, as well as the river mouths, as connections between riverine and the lacustrine habitat. The thesis is composed of three main publications about Lake Sentani and supported by several publications that focus on other tropical lakes in Indonesia. The first main publication investigates the geochemical characterization of the water column, porewater, and surface sediment (upper 40-50 cm) from the center of the four sub-basins. It reveals that besides catchment lithology, the water column heavily influences the geochemical characteristics in the lake sediments and their porewater. The findings indicate that water column stratification has a strong influence on overall chemistry. The four sub-basins are very different with regard to their water column chemistry. Based on the physicochemical profiles, especially dissolved oxygen, one sub-basin is oxygenated, one intermediate i.e. just reaches oxygen depletion at the sediment-water interface, and two sub-basins are fully meromictic. However, all four sub-basins share the same surface water chemistry. The structure of the water column creates differences on the patterns of anions and cations in the porewater. Likewise, the distinct differences in geochemical composition between the sub-basins show that the lithology in the catchment affects the geochemical characteristic in the sediment. Overall, water column stratification and particularly bottom water oxygenation strongly influence the overall elemental composition of the sediment and porewater composition. The second publication reveals differences in surface sediment composition between habitats, influenced by lithological variations in the catchment area. The macro-element distribution shows that the geochemical characteristics between habitats are different. Furthermore, the geochemical composition also indicates a distinct distribution between the sub-basins. The geochemical composition of the eastern sub-basin suggests that lithogenic elements are more dominant than authigenic elements. This is also supported by sulfide speciation, particle distribution, and smear slide data. The third publication is a geomicrobiological study of the surface sediment. We compare the geochemical composition of the surface sediment and its microbiological composition and compare the different signals. Next Generation Sequencing (NGS) of the 16S rRNA gene was applied to determine the microbial community composition of the surface sediment from a great number of locations. We use a large number of sampling sites in all four sub-basins as well as in the rivers and river mouths to illustrate the links between the river, the river mouth, and the lake. Rigorous assessment of microbial communities across the diverse Lake Sentani habitats allowed us to study some of these links and report novel findings on microbial patterns in such ecosystems. The main result of the Principal Coordinates Analysis (PCoA) based on microbial community composition highlighted some commonalities but also differences between the microbial community analysis and the geochemical data. The microbial community in rivers, river mouths and sub-basins is strongly influenced by anthropogenic input from the catchment area. Generally, Bacteroidetes and Firmicutes could be an indicator for river sediments. The microbial community in the river is directly influenced by anthropogenic pressure and is markedly different from the lake sediment. Meanwhile, the microbial community in the lake sediment reflects the anoxic environment, which is prevalent across the lake in all sediments below a few mm burial depth. The lake sediments harbour abundant sulfate reducers and methanogens. The microbial communities in sediments from river mouths are influenced by both rivers and lake ecosystems. This study provides valuable information to understand the basic processes that control biogeochemical cycling in Lake Sentani. Our findings are critical for lake managers to accurately assess the uncertainties of the changing environmental conditions related to the anthropogenic pressure in the catchment area. Lake Sentani is a unique study site directly influenced by the different geology across the watershed and morphometry of the four studied basins. As a result of these factors, there are distinct geochemical differences between the habitats (river, river mouth, lake) and the four sub-basins. In addition to geochemistry, microbial community composition also shows differences between habitats, although there are no obvious differences between the four sub-basins. However, unlike sediment geochemistry, microbial community composition is impacted by human activities. Therefore, this thesis will provide crucial baseline data for future lake management.}, language = {en} } @article{NomosatryoTjallingiiHennyetal.2022, author = {Nomosatryo, Sulung and Tjallingii, Rik and Henny, Cynthia and Ridwansyah, Iwan and Wagner, Dirk and Tom{\´a}s, Sara and Kallmeyer, Jens}, title = {Surface sediment composition and depositional environments in tropical Lake Sentani, Papua Province, Indonesia}, series = {Journal of Paleolimnology}, journal = {Journal of Paleolimnology}, publisher = {Springer}, address = {Dordrecht}, issn = {0921-2728}, doi = {10.1007/s10933-022-00259-4}, pages = {20}, year = {2022}, abstract = {Tropical Lake Sentani in the Indonesian Province Papua consists of four separate basins and is surrounded by a catchment with a very diverse geology. We characterized the surface sediment (upper 5 cm) of the lake's four sub-basins based on multivariate statistical analyses (principal component analysis, hierarchical clustering) of major element compositions obtained by X-ray fluorescence scanning. Three types of sediment are identified based on distinct compositional differences between rivers, shallow/proximal and deep/distal lake sediments. The different sediment types are mainly characterized by the correlation of elements associated with redox processes (S, Mn, Fe), carbonates (Ca), and detrital input (Ti, Al, Si, K) derived by river discharge. The relatively coarse-grained river sediments mainly derive form the mafic catchment geology and contribution of the limestone catchment geology is only limited. Correlation of redox sensitive and detrital elements are used to reveal oxidation conditions, and indicate oxic conditions in river samples and reducing conditions for lake sediments. Organic carbon (TOC) generally correlates with redox sensitive elements, although a correlation between TOC and individual elements change strongly between the three sediment types. Pyrite is the quantitatively dominant reduced sulfur mineral, monosulfides only reach appreciable concentrations in samples from rivers draining mafic and ultramafic catchments. Our study shows large spatial heterogeneity within the lake's sub-basins that is mainly caused by catchment geology and topography, river runoff as well as the bathymetry and the depth of the oxycline. We show that knowledge about lateral heterogeneity is crucial for understanding the geochemical and sedimentological variations recorded by these sediments. The highly variable conditions make Lake Sentani a natural laboratory, with its different sub-basins representing different depositional environments under identical tropical climate conditions.}, language = {en} }