@phdthesis{Jehannin2015, author = {Jehannin, Marie}, title = {About the role of physico-chemical properties and hydrodynamics on the progress of a precipitation reaction}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-88364}, school = {Universit{\"a}t Potsdam}, pages = {xii, 130}, year = {2015}, abstract = {The size and morphology control of precipitated solid particles is a major economic issue for numerous industries. For instance, it is interesting for the nuclear industry, concerning the recovery of radioactive species from used nuclear fuel. The precipitates features, which are a key parameter from the post-precipitate processing, depend on the process local mixing conditions. So far, the relationship between precipitation features and hydrodynamic conditions have not been investigated. In this study, a new experimental configuration consisting of coalescing drops is set to investigate the link between reactive crystallization and hydrodynamics. Two configurations of aqueous drops are examined. The first one corresponds to high contact angle drops (>90°) in oil, as a model system for flowing drops, the second one correspond to sessile drops in air with low contact angle (<25°). In both cases, one reactive is dissolved in each drop, namely oxalic acid and cerium nitrate. When both drops get into contact, they may coalesce; the dissolved species mix and react to produce insoluble cerium oxalate. The precipitates features and effect on hydrodynamics are investigated depending on the solvent. In the case of sessile drops in air, the surface tension difference between the drops generates a gradient which induces a Marangoni flow from the low surface tension drop over the high surface tension drop. By setting the surface tension difference between the two drops and thus the Marangoni flow, the hydrodynamics conditions during the drop coalescence could be modified. Diols/water mixtures are used as solvent, in order to fix the surface tension difference between the liquids of both drops regardless from the reactant concentration. More precisely, the used diols, 1,2-propanediol and 1,3-propanediol, are isomer with identical density and close viscosity. By keeping the water volume fraction constant and playing with the 1,2-propanediol and 1,3-propanediol volume fractions of the solvents, the mixtures surface tensions differ up to 10 mN/m for identical/constant reactant concentration, density and viscosity. 3 precipitation behaviors were identified for the coalescence of water/diols/recatants drops depending on the oxalic excess. The corresponding precipitates patterns are visualized by optical microscopy and the precipitates are characterized by confocal microscopy SEM, XRD and SAXS measurements. In the intermediate oxalic excess regime, formation of periodic patterns can be observed. These patterns consist in alternating cerium oxalate precipitates with distinct morphologies, namely needles and "microflowers". Such periodic fringes can be explained by a feedback mechanism between convection, reaction and the diffusion.}, language = {en} } @phdthesis{Poltrock2010, author = {Poltrock, Silvana}, title = {About the relation between implicit Theory of Mind \& the comprehension of complement sentences}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-52293}, school = {Universit{\"a}t Potsdam}, year = {2010}, abstract = {Previous studies on the relation between language and social cognition have shown that children's mastery of embedded sentential complements plays a causal role for the development of a Theory of Mind (ToM). Children start to succeed on complementation tasks in which they are required to report the content of an embedded clause in the second half of the fourth year. Traditional ToM tasks test the child's ability to predict that a person who is holding a false belief (FB) about a situation will act "falsely". In these task, children do not represent FBs until the age of 4 years. According the linguistic determinism hypothesis, only the unique syntax of complement sentences provides the format for representing FBs. However, experiments measuring children's looking behavior instead of their explicit predictions provided evidence that already 2-year olds possess an implicit ToM. This dissertation examined the question of whether there is an interrelation also between implicit ToM and the comprehension of complement sentences in typically developing German preschoolers. Two studies were conducted. In a correlational study (Study 1 ), 3-year-old children's performance on a traditional (explicit) FB task, on an implicit FB task and on language tasks measuring children's comprehension of tensed sentential complements were collected and tested for their interdependence. Eye-tracking methodology was used to assess implicit ToM by measuring participants' spontaneous anticipatory eye movements while they were watching FB movies. Two central findings emerged. First, predictive looking (implicit ToM) was not correlated with complement mastery, although both measures were associated with explicit FB task performance. This pattern of results suggests that explicit, but not implicit ToM is language dependent. Second, as a group, 3-year-olds did not display implicit FB understanding. That is, previous findings on a precocious reasoning ability could not be replicated. This indicates that the characteristics of predictive looking tasks play a role for the elicitation of implicit FB understanding as the current task was completely nonverbal and as complex as traditional FB tasks. Study 2 took a methodological approach by investigating whether children display an earlier comprehension of sentential complements when using the same means of measurement as used in experimental tasks tapping implicit ToM, namely anticipatory looking. Two experiments were conducted. 3-year-olds were confronted either with a complement sentence expressing the protagonist's FB (Exp. 1) or with a complex sentence expressing the protagonist's belief without giving any information about the truth/ falsity of the belief (Exp. 2). Afterwards, their expectations about the protagonist's future behavior were measured. Overall, implicit measures reveal no considerably earlier understanding of sentential complementation. Whereas 3-year-olds did not display a comprehension of complex sentences if these embedded a false proposition, children from 3;9 years on were proficient in processing complement sentences if the truth value of the embedded proposition could not be evaluated. This pattern of results suggests that (1) the linguistic expression of a person's FB does not elicit implicit FB understanding and that (2) the assessment of the purely syntactic understanding of complement sentences is affected by competing reality information. In conclusion, this dissertation found no evidence that the implicit ToM is related to the comprehension of sentential complementation. The findings suggest that implicit ToM might be based on nonlinguistic processes. Results are discussed in the light of recently proposed dual-process models that assume two cognitive mechanisms that account for different levels of ToM task performance.}, language = {en} } @phdthesis{Katzmann2023, author = {Katzmann, Maximilian}, title = {About the analysis of algorithms on networks with underlying hyperbolic geometry}, doi = {10.25932/publishup-58296}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-582965}, school = {Universit{\"a}t Potsdam}, pages = {xi, 191}, year = {2023}, abstract = {Many complex systems that we encounter in the world can be formalized using networks. Consequently, they have been in the focus of computer science for decades, where algorithms are developed to understand and utilize these systems. Surprisingly, our theoretical understanding of these algorithms and their behavior in practice often diverge significantly. In fact, they tend to perform much better on real-world networks than one would expect when considering the theoretical worst-case bounds. One way of capturing this discrepancy is the average-case analysis, where the idea is to acknowledge the differences between practical and worst-case instances by focusing on networks whose properties match those of real graphs. Recent observations indicate that good representations of real-world networks are obtained by assuming that a network has an underlying hyperbolic geometry. In this thesis, we demonstrate that the connection between networks and hyperbolic space can be utilized as a powerful tool for average-case analysis. To this end, we first introduce strongly hyperbolic unit disk graphs and identify the famous hyperbolic random graph model as a special case of them. We then consider four problems where recent empirical results highlight a gap between theory and practice and use hyperbolic graph models to explain these phenomena theoretically. First, we develop a routing scheme, used to forward information in a network, and analyze its efficiency on strongly hyperbolic unit disk graphs. For the special case of hyperbolic random graphs, our algorithm beats existing performance lower bounds. Afterwards, we use the hyperbolic random graph model to theoretically explain empirical observations about the performance of the bidirectional breadth-first search. Finally, we develop algorithms for computing optimal and nearly optimal vertex covers (problems known to be NP-hard) and show that, on hyperbolic random graphs, they run in polynomial and quasi-linear time, respectively. Our theoretical analyses reveal interesting properties of hyperbolic random graphs and our empirical studies present evidence that these properties, as well as our algorithmic improvements translate back into practice.}, language = {en} } @phdthesis{Neigenfind2011, author = {Neigenfind, Jost}, title = {About a refined algorithm for the computation of absolute concentration robustness}, address = {Potsdam}, pages = {152 S.}, year = {2011}, language = {en} } @phdthesis{Klisch2003, author = {Klisch, Anja}, title = {Ableitung von Blattfl{\"a}chenindex und Bedeckungsgrad aus Fernerkundungsdaten f{\"u}r das Erosionsmodell EROSION 3D}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0001455}, school = {Universit{\"a}t Potsdam}, year = {2003}, abstract = {In den letzten Jahren wurden relativ komplexe Erosionsmodelle entwickelt, deren Teilprozesse immer mehr auf physikalisch begr{\"u}ndeten Ans{\"a}tzen beruhen. Damit verbunden ist eine h{\"o}here Anzahl aktueller Eingangsparameter, deren Bestimmung im Feld arbeits- und kostenaufwendig ist. Zudem werden die Parameter punktuell, also an bestimmten Stellen und nicht fl{\"a}chenhaft wie bei der Fernerkundung, erfasst. Im Rahmen dieser Arbeit wird gezeigt, wie Satellitendaten als relativ kosteng{\"u}nstige Erg{\"a}nzung oder Alternative zur konventionellen Parametererhebung genutzt werden k{\"o}nnen. Dazu werden beispielhaft der Blattfl{\"a}chenindex (LAI) und der Bedeckungsgrad f{\"u}r das physikalisch begr{\"u}ndete Erosionsmodell EROSION 3D abgeleitet. Im Mittelpunkt des Interesses steht dabei das Aufzeigen von existierenden Methoden, die die Basis f{\"u}r eine operationelle Bereitstellung solcher Gr{\"o}ßen nicht nur f{\"u}r Erosions- sondern allgemein f{\"u}r Prozessmodelle darstellen. Als Untersuchungsgebiet dient das prim{\"a}r landwirtschaftlich genutzte Einzugsgebiet des Mehltheuer Baches, das sich im S{\"a}chsischen L{\"o}ßgefilde befindet und f{\"u}r das Simulationsrechnungen mit konventionell erhobenen Eingangsparametern f{\"u}r 29 Niederschlagsereignisse im Jahr 1999 vorliegen [MICHAEL et al. 2000]. Die Fernerkundungsdatengrundlage bilden Landsat-5-TM-Daten vom 13.03.1999, 30.04.1999 und 19.07.1999. Da die Vegetationsparameter f{\"u}r alle Niederschlagsereignisse vorliegen sollen, werden sie basierend auf der Entwicklung des LAI zeitlich interpoliert. Dazu erfolgt zun{\"a}chst die Ableitung des LAI f{\"u}r alle vorhandenen Fruchtarten nach den semi-empirischen Modellen von CLEVERS [1986] und BARET \& GUYOT [1991] mit aus der Literatur entnommenen Koeffizienten. Des Weiteren wird eine Methode untersucht, nach der die Koeffizienten f{\"u}r das Clevers-Modell aus den TM-Daten und einem vereinfachten Wachstumsmodell bestimmt werden. Der Bedeckungsgrad wird nach ROSS [1981] aus dem LAI ermittelt. Die zeitliche Interpolation des LAI wird durch die schlagbezogene Anpassung eines vereinfachten Wachstumsmodells umgesetzt, das dem hydrologischen Modell SWIM [KRYSANOVA et al. 1999] entstammt und in das durchschnittliche Tagestemperaturen eingehen. Mit den genannten Methoden bleiben abgestorbene Pflanzenteile unber{\"u}cksichtigt. Im Vergleich zur konventionellen terrestrischen Parametererhebung erm{\"o}glichen sie eine differenziertere Abbildung r{\"a}umlicher Variabilit{\"a}ten und des zeitlichen Verlaufes der Vegetationsparameter. Die Simulationsrechnungen werden sowohl mit den direkten Bedeckungsgraden aus den TM-Daten (pixelbezogen) als auch mit den zeitlich interpolierten Bedeckungsgraden f{\"u}r alle Ereignisse (schlagbezogen) durchgef{\"u}hrt. Bei beiden Vorgehensweisen wird im Vergleich zur bisherigen Absch{\"a}tzung eine Verbesserung der r{\"a}umlichen Verteilung der Parameter und somit eine r{\"a}umliche Umverteilung von Erosions- und Depositionsfl{\"a}chen erreicht. F{\"u}r die im Untersuchungsgebiet vorliegende r{\"a}umliche Heterogenit{\"a}t (z. B. Schlaggr{\"o}ße) bieten Landsat-TM-Daten eine ausreichend genaue r{\"a}umliche Aufl{\"o}sung. Damit wird nachgewiesen, dass die satellitengest{\"u}tzte Fernerkundung im Rahmen dieser Untersuchungen sinnvoll einsetzbar ist. F{\"u}r eine operationelle Bereitstellung der Parameter mit einem vertretbaren Aufwand ist es erforderlich, die Methoden weiter zu validieren und m{\"o}glichst weitestgehend zu automatisieren.}, language = {de} } @phdthesis{Schwandt2003, author = {Schwandt, Daniel}, title = {Abflußentwicklung in Teileinzugsgebieten des Rheins : Simulationen f{\"u}r den Ist-Zustand und f{\"u}r Klimaszenarien}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0001001}, school = {Universit{\"a}t Potsdam}, year = {2003}, abstract = {Die vorliegende Arbeit 'Abflu\ßentwicklung in Teileinzugsgebieten des Rheins - Simulationen f\ür den Ist-Zustand und f\ür Klimaszenarien' untersucht Auswirkungen m\öglicher zuk\ünftiger Klima\änderungen auf das Abflu\ßgeschehen in ausgew\ählten, durch Mittelgebirge gepr\ägten Teileinzugsgebieten des Rheins: Mosel (bis Pegel Cochem); Sieg (bis Pegel Menden 1) und Main (bis Pegel Kemmern).In einem ersten Schritt werden unter Verwendung des hydrologischen Modells HBV-D wichtige Modellprozesse entsprechend der Einzugsgebietscharakteristik parametrisiert und ein Abbild der Gebietshydrologie erzeugt, das mit Zeitreihen gemessener Tageswerte (Temperatur, Niederschlag) eine Zeitreihe der Pegeldurchfl\üsse simulieren kann. Die G\üte der Simulation des Ist-Zustandes (Standard-Me\ßzeitraum 1.1.1961-31.12.1999) ist f\ür die Kalibrierungs- und Validierungszeitr\äume in allen Untersuchungsgebieten gut bis sehr gut.Zur Erleichterung der umfangreichen, zeitaufwendigen einzugsgebietsbezogenen Datenaufbereitung f\ür das hydrologische Modell HBV-D wurde eine Arbeitsumgebung auf Basis von Programmerweiterungen des Geoinformationssystems ArcView und zus\ätzlichen Hilfsprogrammen entwickelt. Die Arbeitsumgebung HBV-Params enth\ält eine graphische Benutzeroberfl\äche und r\äumt sowohl erfahrenen Hydrologen als auch hydrologisch geschulten Anwendern, z.B. Studenten der Vertiefungsrichtung Hydrologie, Flexibilit\ät und vollst\ändige Kontrolle bei der Ableitung von Parameterwerten und der Editierung von Parameter- und Steuerdateien ein. Somit ist HBV-D im Gegensatz zu Vorl\äuferversionen mit rudiment\ären Arbeitsumgebungen auch au\ßerhalb der Forschung f\ür Lehr- und \Übungszwecke einsetzbar.In einem zweiten Schritt werden Gebietsniederschlagssummen, Gebietstemperaturen und simulierte Mittelwerte des Durchflusses (MQ) des Ist-Zustandes mit den Zust\änden zweier Klimaszenarien f\ür den Szenarienzeitraum 100 Jahre sp\äter (2061-2099) verglichen. Die Klimaszenarien beruhen auf simulierten Zirkulationsmustern je eines Modellaufes zweier Globaler Zirkulationsmodelle (GCM), die mit einem statistischen Regionalisierungsverfahren in Tageswertszenarien (Temperatur, Niederschlag) an Me\ßstationen in den Untersuchungsgebieten \überf\ührt wurden und als Eingangsdaten des hydrologischen Modells verwendet werden.F\ür die zweite H\älfte des 21. Jahrhunderts weisen beide regionalisierten Klimaszenarien eine Zunahme der Jahresmittel der Gebietstemperatur sowie eine Zunahme der Jahressummen der Gebietsniederschl\äge auf, die mit einer hohen Variabilit\ät einhergeht. Eine Betrachtung der saisonalen (monatlichen) \Änderungsbetr\äge von Temperatur, Niederschlag und mittlerem Durchflu\ß zwischen Szenarienzeitraum (2061-2099) und Ist-Zustand ergibt in allen Untersuchungsgebieten eine Temperaturzunahme (h\öher im Sommer als im Winter) und eine generelle Zunahme der Niederschlagssummen (mit starken Schwankungen zwischen den Einzelmonaten), die bei der hydrologischen Simulation zu deutlich h\öheren mittleren Durchfl\üssen von November bis M\ärz und leicht erh\öhten mittleren Durchfl\üssen in den restlichen Monaten f\ühren. Die St\ärke der Durchflu\ßerh\öhung ist nach den individuellen Klimaszenarien unterschiedlich und im Sommer- bzw. Winterhalbjahr gegenl\äufig ausgepr\ägt. Hauptursache f\ür die simulierte starke Zunahme der mittleren Durchfl\üsse im Winterhalbjahr ist die trotz Temperaturerh\öhung der Klimaszenarien winterlich niedrige Evapotranspiration, so da\ß erh\öhte Niederschl\äge direkt in erh\öhten Durchflu\ß transformiert werden k\önnen.Der Vergleich der Untersuchungsgebiete zeigt in Einzelmonaten von West nach Ost abnehmende \Änderungsbetr\äge der Niederschlagssummen, die als Hinweis auf die Bedeutung der Kontinentalit\ätseinfl\üsse auch unter ge\änderten klimatischen Bedingungen in S\üdwestdeutschland aufgefa\ßt werden k\önnten.Aus den regionalisierten Klimaszenarien werden \Änderungsbetr\äge f\ür die Modulation gemessener Zeitreihen mittels synthetischer Szenarien abgeleitet, die mit einem geringen Rechenaufwand in hydrologische Modellantworten \überf\ührt werden k\önnen. Die direkte Ableitung synthetischer Szenarien aus GCM-Ergebniswerten (bodennahe Temperatur und Gesamtniederschlag) an einzelnen GCM-Gitterpunkten erbrachte unbefriedigende Ergebnisse.Ob, in welcher H\öhe und zeitlichen Verteilung die in den (synthetischen) Szenarien verwendeten Niederschlags- und Temperatur\änderungen eintreten werden, kann nur die Zukunft zeigen. Eine Absch\ätzung, wie sich die Abflu\ßverh\ältnisse und insbesondere die mittleren Durchfl\üsse der Untersuchungsgebiete bei m\öglichen \Änderungen entwickeln w\ürden, kann jedoch heute schon vorgenommen werden. Simulationen auf Szenariogrundlagen sind ein Weg, unbekannte zuk\ünftige Randbedingungen sowie regionale Auswirkungen m\öglicher \Änderungen des Klimasystems ausschnittsweise abzusch\ätzen und entsprechende Risikominderungsstrategien zu entwickeln. Jegliche Modellierung und Simulation nat\ürlicher Systeme ist jedoch mit betr\ächtlichen Unsicherheiten verkn\üpft. Vergleichsweise gro\ße Unsicherheiten sind mit der zuk\ünftigen Entwicklung des sozio\ökonomischen Systems und der Komplexit\ät des Klimasystems verbunden. Weiterhin haben Unsicherheiten der einzelnen Modellbausteine der Modellkette Emissionsszenarien/Gaszyklusmodelle - Globale Zirkulationsmodelle/Regionalisierung - hydrologisches Modell, die eine Kaskade der Unsicherheiten ergeben, neben Datenunsicherheiten bei der Erfassung hydrometeorologischer Me\ßgr\ö\ßen einen erheblichen Einflu\ß auf die Vertrauensw\ürdigkeit der Simulationsergebnisse, die als ein dargestellter Wert eines Ergebnisbandes zu interpretieren sind.Der Einsatz (1) robuster hydrologischer Modelle, die insbesondere temperaturbeeinflu\ßte Prozesse ad\äquat beschreiben,(2) die Verwendung langer Zeitreihen (wenigsten 30 Jahre) von Me\ßwerten und(3) die gleichzeitige vergleichende Betrachtung von Klimaszenarien, die auf unterschiedlichen GCMs beruhen (und wenn m\öglich, verschiedene Emissionsszenarien ber\ücksichtigen),sollte aus Gr\ünden der wissenschaftlichen Sorgfalt, aber auch der besseren Vergleichbarkeit der Ergebnisse von Regionalstudien im noch jungen Forschungsfeld der Klimafolgenforschung beachtet werden.}, language = {de} } @phdthesis{Oppenheim2011, author = {Oppenheim, Robert}, title = {Abfindungsklauseln in Personengesellschaftvertr{\"a}gen : Pl{\"a}doyer f{\"u}r eine Verhandlungsklausel}, series = {Nomos Universit{\"a}tsschriften : Recht}, volume = {728}, journal = {Nomos Universit{\"a}tsschriften : Recht}, publisher = {Nomos}, address = {Baden-Baden}, isbn = {978-3-8329-6509-9}, pages = {140 S.}, year = {2011}, language = {de} } @phdthesis{Schneider1999, author = {Schneider, Heiko}, title = {Abbau von Flavonoiden durch Mikroorganismen des Gastrointestinaltrakts}, publisher = {Logos-Verl.}, address = {Berlin}, isbn = {3-89722-330-9}, pages = {VII, 172 S. : graph. Darst.}, year = {1999}, language = {de} } @phdthesis{Krossner1995, author = {Kroßner, Thomas}, title = {Ab-initio-Untersuchung der Potentialhyperfl{\"a}chen und des spektroskopischen Verhaltens des Fluoroformylradikals FCO}, pages = {111 S. : graph. Darst.}, year = {1995}, language = {de} } @phdthesis{Mavrothalassiti2020, author = {Mavrothalassiti, Eleni}, title = {A.thaliana root and shoot single-cell transcriptomes and detection of mobile transcripts}, school = {Universit{\"a}t Potsdam}, pages = {133}, year = {2020}, language = {en} } @phdthesis{Hasnat2021, author = {Hasnat, Muhammad Abrar}, title = {A-Type Carrier Proteins are involved in [4Fe-4S] Cluster insertion into the Radical S-adenosylmethionine (SAM) Protein MoaA and other molybdoenzymes}, doi = {10.25932/publishup-53079}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-530791}, school = {Universit{\"a}t Potsdam}, pages = {200}, year = {2021}, abstract = {Iron-sulfur clusters are essential enzyme cofactors. The most common and stable clusters are [2Fe-2S] and [4Fe-4S] that are found in nature. They are involved in crucial biological processes like respiration, gene regulation, protein translation, replication and DNA repair in prokaryotes and eukaryotes. In Escherichia coli, Fe-S clusters are essential for molybdenum cofactor (Moco) biosynthesis, which is a ubiquitous and highly conserved pathway. The first step of Moco biosynthesis is catalyzed by the MoaA protein to produce cyclic pyranopterin monophosphate (cPMP) from 5'GTP. MoaA is a [4Fe-4S] cluster containing radical S-adenosyl-L-methionine (SAM) enzyme. The focus of this study was to investigate Fe-S cluster insertion into MoaA under nitrate and TMAO respiratory conditions using E. coli as a model organism. Nitrate and TMAO respiration usually occur under anaerobic conditions, where oxygen is depleted. Under these conditions, E. coli uses nitrate and TMAO as terminal electron. Previous studies revealed that Fe-S cluster insertion is performed by Fe-S cluster carrier proteins. In E. coli, these proteins are known as A-type carrier proteins (ATC) by phylogenomic and genetic studies. So far, three of them have been characterized in detail in E. coli, namely IscA, SufA, and ErpA. This study shows that ErpA and IscA are involved in Fe-S cluster insertion into MoaA under nitrate and TMAO respiratory conditions. ErpA and IscA can partially replace each other in their role to provide [4Fe-4S] clusters for MoaA. SufA is not able to replace the functions of IscA or ErpA under nitrate respiratory conditions. Nitrate reductase is a molybdoenzyme that coordinates Moco and Fe-S clusters. Under nitrate respiratory conditions, the expression of nitrate reductase is significantly increased in E. coli. Nitrate reductase is encoded in narGHJI genes, the expression of which is regulated by the transcriptional regulator, fumarate and nitrate reduction (FNR). The activation of FNR under conditions of nitrate respiration requires one [4Fe-4S] cluster. In this part of the study, we analyzed the insertion of Fe-S cluster into FNR for the expression of narGHJI genes in E. coli. The results indicate that ErpA is essential for the FNR-dependent expression of the narGHJI genes, a role that can be replaced partially by IscA and SufA when they are produced sufficiently under the conditions tested. This observation suggests that ErpA is indirectly regulating nitrate reductase expression via inserting Fe-S clusters into FNR. Most molybdoenzymes are complex multi-subunit and multi-cofactor-containing enzymes that coordinate Fe-S clusters, which are functioning as electron transfer chains for catalysis. In E. coli, periplasmic aldehyde oxidoreductase (PaoAC) is a heterotrimeric molybdoenzyme that consists of flavin, two [2Fe-2S], one [4Fe-4S] cluster and Moco. In the last part of this study, we investigated the insertion of Fe-S clusters into E. coli periplasmic aldehyde oxidoreductase (PaoAC). The results show that SufA and ErpA are involved in inserting [4Fe-4S] and [2Fe-2S] clusters into PaoABC, respectively under aerobic respiratory conditions.}, language = {en} } @phdthesis{Amaechi2020, author = {Amaechi, Mary Chimaobi}, title = {A'-movement dependencies and their reflexes in Igbo}, doi = {10.25932/publishup-47152}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-471524}, school = {Universit{\"a}t Potsdam}, pages = {i, 195}, year = {2020}, abstract = {In this thesis, I examine different A-bar movement dependencies in Igbo, a Benue-Congo language spoken in southern Nigeria. Movement dependencies are found in constructions where an element is moved to the left edge of the clause to express information-structural categories such as in questions, relativization and focus. I show that these constructions in Igbo are very uniform from a syntactic point of view. The constructions are built on two basic fronting operations: relativization and focus movement, and are biclausal. I further investigate several morphophonological effects that are found in these A-bar constructions. I propose that these effects are reflexes of movement that are triggered when an element is moved overtly in relativization or focus. This proposal helps to explain the tone patterns that have previously been assumed to be a property of relative clauses. The thesis adds to the growing body of tonal reflexes of A-bar movement reported for a few African languages. The thesis also provides an insight into the complementizer domain (C-domain) of Igbo.}, language = {en} } @phdthesis{Kneis2007, author = {Kneis, David}, title = {A water quality model for shallow river-lake systems and its application in river basin management}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-14647}, school = {Universit{\"a}t Potsdam}, year = {2007}, abstract = {This work documents the development and application of a new model for simulating mass transport and turnover in rivers and shallow lakes. The simulation tool called 'TRAM' is intended to complement mesoscale eco-hydrological catchment models in studies on river basin management. TRAM aims at describing the water quality of individual water bodies, using problem- and scale-adequate approaches for representing their hydrological and ecological characteristics. The need for such flexible water quality analysis and prediction tools is expected to further increase during the implementation of the European Water Framework Directive (WFD) as well as in the context of climate change research. The developed simulation tool consists of a transport and a reaction module with the latter being highly flexible with respect to the description of turnover processes in the aquatic environment. Therefore, simulation approaches of different complexity can easily be tested and model formulations can be chosen in consideration of the problem at hand, knowledge of process functioning, and data availability. Consequently, TRAM is suitable for both heavily simplified engineering applications as well as scientific ecosystem studies involving a large number of state variables, interactions, and boundary conditions. TRAM can easily be linked to catchment models off-line and it requires the use of external hydrodynamic simulation software. Parametrization of the model and visualization of simulation results are facilitated by the use of geographical information systems as well as specific pre- and post-processors. TRAM has been developed within the research project 'Management Options for the Havel River Basin' funded by the German Ministry of Education and Research. The project focused on the analysis of different options for reducing the nutrient load of surface waters. It was intended to support the implementation of the WFD in the lowland catchment of the Havel River located in North-East Germany. Within the above-mentioned study TRAM was applied with two goals in mind. In a first step, the model was used for identifying the magnitude as well as spatial and temporal patterns of nitrogen retention and sediment phosphorus release in a 100~km stretch of the highly eutrophic Lower Havel River. From the system analysis, strongly simplified conceptual approaches for modeling N-retention and P-remobilization in the studied river-lake system were obtained. In a second step, the impact of reduced external nutrient loading on the nitrogen and phosphorus concentrations of the Havel River was simulated (scenario analysis) taking into account internal retention/release. The boundary conditions for the scenario analysis such as runoff and nutrient emissions from river basins were computed by project partners using the catchment models SWIM and ArcEGMO-Urban. Based on the output of TRAM, the considered options of emission control could finally be evaluated using a site-specific assessment scale which is compatible with the requirements of the WFD. Uncertainties in the model predictions were also examined. According to simulation results, the target of the WFD -- with respect to total phosphorus concentrations in the Lower Havel River -- could be achieved in the medium-term, if the full potential for reducing point and non-point emissions was tapped. Furthermore, model results suggest that internal phosphorus loading will ease off noticeably until 2015 due to a declining pool of sedimentary mobile phosphate. Mass balance calculations revealed that the lakes of the Lower Havel River are an important nitrogen sink. This natural retention effect contributes significantly to the efforts aimed at reducing the river's nitrogen load. If a sustainable improvement of the river system's water quality is to be achieved, enhanced measures to further reduce the immissions of both phosphorus and nitrogen are required.}, language = {en} } @phdthesis{Hu2006, author = {Hu, Ji}, title = {A virtual machine architecture for IT-security laboratories}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-7818}, school = {Universit{\"a}t Potsdam}, year = {2006}, abstract = {This thesis discusses challenges in IT security education, points out a gap between e-learning and practical education, and presents a work to fill the gap. E-learning is a flexible and personalized alternative to traditional education. Nonetheless, existing e-learning systems for IT security education have difficulties in delivering hands-on experience because of the lack of proximity. Laboratory environments and practical exercises are indispensable instruction tools to IT security education, but security education in conventional computer laboratories poses particular problems such as immobility as well as high creation and maintenance costs. Hence, there is a need to effectively transform security laboratories and practical exercises into e-learning forms. In this thesis, we introduce the Tele-Lab IT-Security architecture that allows students not only to learn IT security principles, but also to gain hands-on security experience by exercises in an online laboratory environment. In this architecture, virtual machines are used to provide safe user work environments instead of real computers. Thus, traditional laboratory environments can be cloned onto the Internet by software, which increases accessibility to laboratory resources and greatly reduces investment and maintenance costs. Under the Tele-Lab IT-Security framework, a set of technical solutions is also proposed to provide effective functionalities, reliability, security, and performance. The virtual machines with appropriate resource allocation, software installation, and system configurations are used to build lightweight security laboratories on a hosting computer. Reliability and availability of laboratory platforms are covered by a virtual machine management framework. This management framework provides necessary monitoring and administration services to detect and recover critical failures of virtual machines at run time. Considering the risk that virtual machines can be misused for compromising production networks, we present a security management solution to prevent the misuse of laboratory resources by security isolation at the system and network levels. This work is an attempt to bridge the gap between e-learning/tele-teaching and practical IT security education. It is not to substitute conventional teaching in laboratories but to add practical features to e-learning. This thesis demonstrates the possibility to implement hands-on security laboratories on the Internet reliably, securely, and economically.}, subject = {Computersicherheit}, language = {en} } @phdthesis{Vu2022, author = {Vu, Nils Leif}, title = {A task-based parallel elliptic solver for numerical relativity with discontinuous Galerkin methods}, doi = {10.25932/publishup-56226}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-562265}, school = {Universit{\"a}t Potsdam}, pages = {172}, year = {2022}, abstract = {Elliptic partial differential equations are ubiquitous in physics. In numerical relativity---the study of computational solutions to the Einstein field equations of general relativity---elliptic equations govern the initial data that seed every simulation of merging black holes and neutron stars. In the quest to produce detailed numerical simulations of these most cataclysmic astrophysical events in our Universe, numerical relativists resort to the vast computing power offered by current and future supercomputers. To leverage these computational resources, numerical codes for the time evolution of general-relativistic initial value problems are being developed with a renewed focus on parallelization and computational efficiency. Their capability to solve elliptic problems for accurate initial data must keep pace with the increasing detail of the simulations, but elliptic problems are traditionally hard to parallelize effectively. In this thesis, I develop new numerical methods to solve elliptic partial differential equations on computing clusters, with a focus on initial data for orbiting black holes and neutron stars. I develop a discontinuous Galerkin scheme for a wide range of elliptic equations, and a stack of task-based parallel algorithms for their iterative solution. The resulting multigrid-Schwarz preconditioned Newton-Krylov elliptic solver proves capable of parallelizing over 200 million degrees of freedom to at least a few thousand cores, and already solves initial data for a black hole binary about ten times faster than the numerical relativity code SpEC. I also demonstrate the applicability of the new elliptic solver across physical disciplines, simulating the thermal noise in thin mirror coatings of interferometric gravitational-wave detectors to unprecedented accuracy. The elliptic solver is implemented in the new open-source SpECTRE numerical relativity code, and set up to support simulations of astrophysical scenarios for the emerging era of gravitational-wave and multimessenger astronomy.}, language = {en} } @phdthesis{Kraus2021, author = {Kraus, Sara Milena}, title = {A Systems Medicine approach for heart valve diseases}, doi = {10.25932/publishup-52226}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-522266}, school = {Universit{\"a}t Potsdam}, pages = {xi, 186}, year = {2021}, abstract = {In Systems Medicine, in addition to high-throughput molecular data (*omics), the wealth of clinical characterization plays a major role in the overall understanding of a disease. Unique problems and challenges arise from the heterogeneity of data and require new solutions to software and analysis methods. The SMART and EurValve studies establish a Systems Medicine approach to valvular heart disease -- the primary cause of subsequent heart failure. With the aim to ascertain a holistic understanding, different *omics as well as the clinical picture of patients with aortic stenosis (AS) and mitral regurgitation (MR) are collected. Our task within the SMART consortium was to develop an IT platform for Systems Medicine as a basis for data storage, processing, and analysis as a prerequisite for collaborative research. Based on this platform, this thesis deals on the one hand with the transfer of the used Systems Biology methods to their use in the Systems Medicine context and on the other hand with the clinical and biomolecular differences of the two heart valve diseases. To advance differential expression/abundance (DE/DA) analysis software for use in Systems Medicine, we state 21 general software requirements and features of automated DE/DA software, including a novel concept for the simple formulation of experimental designs that can represent complex hypotheses, such as comparison of multiple experimental groups, and demonstrate our handling of the wealth of clinical data in two research applications DEAME and Eatomics. In user interviews, we show that novice users are empowered to formulate and test their multiple DE hypotheses based on clinical phenotype. Furthermore, we describe insights into users' general impression and expectation of the software's performance and show their intention to continue using the software for their work in the future. Both research applications cover most of the features of existing tools or even extend them, especially with respect to complex experimental designs. Eatomics is freely available to the research community as a user-friendly R Shiny application. Eatomics continued to help drive the collaborative analysis and interpretation of the proteomic profile of 75 human left myocardial tissue samples from the SMART and EurValve studies. Here, we investigate molecular changes within the two most common types of valvular heart disease: aortic valve stenosis (AS) and mitral valve regurgitation (MR). Through DE/DA analyses, we explore shared and disease-specific protein alterations, particularly signatures that could only be found in the sex-stratified analysis. In addition, we relate changes in the myocardial proteome to parameters from clinical imaging. We find comparable cardiac hypertrophy but differences in ventricular size, the extent of fibrosis, and cardiac function. We find that AS and MR show many shared remodeling effects, the most prominent of which is an increase in the extracellular matrix and a decrease in metabolism. Both effects are stronger in AS. In muscle and cytoskeletal adaptations, we see a greater increase in mechanotransduction in AS and an increase in cortical cytoskeleton in MR. The decrease in proteostasis proteins is mainly attributable to the signature of female patients with AS. We also find relevant therapeutic targets. In addition to the new findings, our work confirms several concepts from animal and heart failure studies by providing the largest collection of human tissue from in vivo collected biopsies to date. Our dataset contributing a resource for isoform-specific protein expression in two of the most common valvular heart diseases. Apart from the general proteomic landscape, we demonstrate the added value of the dataset by showing proteomic and transcriptomic evidence for increased expression of the SARS-CoV-2- receptor at pressure load but not at volume load in the left ventricle and also provide the basis of a newly developed metabolic model of the heart.}, language = {en} } @phdthesis{Zauber2013, author = {Zauber, Henrik}, title = {A systems biology driven approach for analyzing lipid protein interactions in sterol biosynthesis mutants}, address = {Potsdam}, pages = {126 S.}, year = {2013}, language = {en} } @phdthesis{Andorf2011, author = {Andorf, Sandra}, title = {A systems biological approach towards the molecular basis of heterosis in Arabidopsis thaliana}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-51173}, school = {Universit{\"a}t Potsdam}, year = {2011}, abstract = {Heterosis is defined as the superiority in performance of heterozygous genotypes compared to their corresponding genetically different homozygous parents. This phenomenon is already known since the beginning of the last century and it has been widely used in plant breeding, but the underlying genetic and molecular mechanisms are not well understood. In this work, a systems biological approach based on molecular network structures is proposed to contribute to the understanding of heterosis. Hybrids are likely to contain additional regulatory possibilities compared to their homozygous parents and, therefore, they may be able to correctly respond to a higher number of environmental challenges, which leads to a higher adaptability and, thus, the heterosis phenomenon. In the network hypothesis for heterosis, presented in this work, more regulatory interactions are expected in the molecular networks of the hybrids compared to the homozygous parents. Partial correlations were used to assess this difference in the global interaction structure of regulatory networks between the hybrids and the homozygous genotypes. This network hypothesis for heterosis was tested on metabolite profiles as well as gene expression data of the two parental Arabidopsis thaliana accessions C24 and Col-0 and their reciprocal crosses. These plants are known to show a heterosis effect in their biomass phenotype. The hypothesis was confirmed for mid-parent and best-parent heterosis for either hybrid of our experimental metabolite as well as gene expression data. It was shown that this result is influenced by the used cutoffs during the analyses. Too strict filtering resulted in sets of metabolites and genes for which the network hypothesis for heterosis does not hold true for either hybrid regarding mid-parent as well as best-parent heterosis. In an over-representation analysis, the genes that show the largest heterosis effects according to our network hypothesis were compared to genes of heterotic quantitative trait loci (QTL) regions. Separately for either hybrid regarding mid-parent as well as best-parent heterosis, a significantly larger overlap between the resulting gene lists of the two different approaches towards biomass heterosis was detected than expected by chance. This suggests that each heterotic QTL region contains many genes influencing biomass heterosis in the early development of Arabidopsis thaliana. Furthermore, this integrative analysis led to a confinement and an increased confidence in the group of candidate genes for biomass heterosis in Arabidopsis thaliana identified by both approaches.}, language = {en} } @phdthesis{Stange2024, author = {Stange, Maike}, title = {A study on Coronin-A and Aip1 function in motility of Dictyostelium discoideum and on Aip1 interchangeability between Dictyostelium discoideum and Arabidopsis thaliana}, doi = {10.25932/publishup-62856}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-628569}, school = {Universit{\"a}t Potsdam}, pages = {xiv, 168}, year = {2024}, abstract = {Actin is one of the most highly conserved proteins in eukaryotes and distinct actin-related proteins with filament-forming properties are even found in prokaryotes. Due to these commonalities, actin-modulating proteins of many species share similar structural properties and proposed functions. The polymerization and depolymerization of actin are critical processes for a cell as they can contribute to shape changes to adapt to its environment and to move and distribute nutrients and cellular components within the cell. However, to what extent functions of actin-binding proteins are conserved between distantly related species, has only been addressed in a few cases. In this work, functions of Coronin-A (CorA) and Actin-interacting protein 1 (Aip1), two proteins involved in actin dynamics, were characterized. In addition, the interchangeability and function of Aip1 were investigated in two phylogenetically distant model organisms. The flowering plant Arabidopsis thaliana (encoding two homologs, AIP1-1 and AIP1-2) and in the amoeba Dictyostelium discoideum (encoding one homolog, DdAip1) were chosen because the functions of their actin cytoskeletons may differ in many aspects. Functional analyses between species were conducted for AIP1 homologs as flowering plants do not harbor a CorA gene. In the first part of the study, the effect of four different mutation methods on the function of Coronin-A protein and the resulting phenotype in D. discoideum was revealed in two genetic knockouts, one RNAi knockdown and a sudden loss-of-function mutant created by chemical-induced dislocation (CID). The advantages and disadvantages of the different mutation methods on the motility, appearance and development of the amoebae were investigated, and the results showed that not all observed properties were affected with the same intensity. Remarkably, a new combination of Selection-Linked Integration and CID could be established. In the second and third parts of the thesis, the exchange of Aip1 between plant and amoeba was carried out. For A. thaliana, the two homologs (AIP1-1 and AIP1-2) were analyzed for functionality as well as in D. discoideum. In the Aip1-deficient amoeba, rescue with AIP1-1 was more effective than with AIP1-2. The main results in the plant showed that in the aip1-2 mutant background, reintroduced AIP1-2 displayed the most efficient rescue and A. thaliana AIP1-1 rescued better than DdAip1. The choice of the tagging site was important for the function of Aip1 as steric hindrance is a problem. The DdAip1 was less effective when tagged at the C-terminus, while the plant AIP1s showed mixed results depending on the tag position. In conclusion, the foreign proteins partially rescued phenotypes of mutant plants and mutant amoebae, despite the organisms only being very distantly related in evolutionary terms.}, language = {en} } @phdthesis{Herenz2014, author = {Herenz, Peter}, title = {A study of the absorption characteristics of gaseous galaxy halos in the local Universe}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70513}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Today, it is well known that galaxies like the Milky Way consist not only of stars but also of gas and dust. The galactic halo, a sphere of gas that surrounds the stellar disk of a galaxy, is especially interesting. It provides a wealth of information about in and outflowing gaseous material towards and away from galaxies and their hierarchical evolution. For the Milky Way, the so-called high-velocity clouds (HVCs), fast moving neutral gas complexes in the halo that can be traced by absorption-line measurements, are believed to play a crucial role in the overall matter cycle in our Galaxy. Over the last decades, the properties of these halo structures and their connection to the local circumgalactic and intergalactic medium (CGM and IGM, respectively) have been investigated in great detail by many different groups. So far it remains unclear, however, to what extent the results of these studies can be transferred to other galaxies in the local Universe. In this thesis, we study the absorption properties of Galactic HVCs and compare the HVC absorption characteristics with those of intervening QSO absorption-line systems at low redshift. The goal of this project is to improve our understanding of the spatial extent and physical conditions of gaseous galaxy halos in the local Universe. In the first part of the thesis we use HST /STIS ultraviolet spectra of more than 40 extragalactic background sources to statistically analyze the absorption properties of the HVCs in the Galactic halo. We determine fundamental absorption line parameters including covering fractions of different weakly/intermediately/highly ionized metals with a particular focus on SiII and MgII. Due to the similarity in the ionization properties of SiII and MgII, we are able to estimate the contribution of HVC-like halo structures to the cross section of intervening strong MgII absorbers at z = 0. Our study implies that only the most massive HVCs would be regarded as strong MgII absorbers, if the Milky Way halo would be seen as a QSO absorption line system from an exterior vantage point. Combining the observed absorption-cross section of Galactic HVCs with the well-known number density of intervening strong MgII absorbers at z = 0, we conclude that the contribution of infalling gas clouds (i.e., HVC analogs) in the halos of Milky Way-type galaxies to the cross section of strong MgII absorbers is 34\%. This result indicates that only about one third of the strong MgII absorption can be associated with HVC analogs around other galaxies, while the majority of the strong MgII systems possibly is related to galaxy outflows and winds. The second part of this thesis focuses on the properties of intervening metal absorbers at low redshift. The analysis of the frequency and physical conditions of intervening metal systems in QSO spectra and their relation to nearby galaxies offers new insights into the typical conditions of gaseous galaxy halos. One major aspect in our study was to regard intervening metal systems as possible HVC analogs. We perform a detailed analysis of absorption line properties and line statistics for 57 metal absorbers along 78 QSO sightlines using newly-obtained ultraviolet spectra obtained with HST /COS. We find clear evidence for bimodal distribution in the HI column density in the absorbers, a trend that we interpret as sign for two different classes of absorption systems (with HVC analogs at the high-column density end). With the help of the strong transitions of SiII λ1260, SiIII λ1206, and CIII λ977 we have set up Cloudy photoionization models to estimate the local ionization conditions, gas densities, and metallicities. We find that the intervening absorption systems studied by us have, on average, similar physical conditions as Galactic HVC absorbers, providing evidence that many of them represent HVC analogs in the vicinity of other galaxies. We therefore determine typical halo sizes for SiII, SiIII, and CIII for L = 0.01L∗ and L = 0.05L∗ galaxies. Based on the covering fractions of the different ions in the Galactic halo, we find that, for example, the typical halo size for SiIII is ∼ 160 kpc for L = 0.05L∗ galaxies. We test the plausibility of this result by searching for known galaxies close to the QSO sightlines and at similar redshifts as the absorbers. We find that more than 34\% of the measured SiIII absorbers have galaxies associated with them, with the majority of the absorbers indeed being at impact parameters ρ ≤160 kpc.}, language = {en} } @phdthesis{Sokolova2006, author = {Sokolova, Elena}, title = {A Study of large-scale Atmospheric Dynamics on the Basic of NCEP Data and AOGCM Simulations}, address = {Potsdam}, pages = {128 S. : graph. Darst.}, year = {2006}, language = {en} } @phdthesis{Buschmann2018, author = {Buschmann, Stefan}, title = {A software framework for GPU-based geo-temporal visualization techniques}, doi = {10.25932/publishup-44340}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-443406}, school = {Universit{\"a}t Potsdam}, pages = {viii, 99}, year = {2018}, abstract = {R{\"a}umlich-zeitliche Daten sind Daten, welche sowohl einen Raum- als auch einen Zeitbezug aufweisen. So k{\"o}nnen beispielsweise Zeitreihen von Geodaten, thematische Karten die sich {\"u}ber die Zeit ver{\"a}ndern, oder Bewegungsaufzeichnungen von sich bewegenden Objekten als r{\"a}umlich-zeitliche Daten aufgefasst werden. In der heutigen automatisierten Welt gibt es eine wachsende Anzahl von Datenquellen, die best{\"a}ndig r{\"a}umlich-zeitliche Daten generieren. Hierzu geh{\"o}ren beispielsweise Verkehrs{\"u}berwachungssysteme, die Bewegungsdaten von Menschen oder Fahrzeugen aufzeichnen, Fernerkundungssysteme, welche regelm{\"a}ßig unsere Umgebung scannen und digitale Abbilder wie z.B. Stadt- und Landschaftsmodelle erzeugen, sowie Sensornetzwerke in unterschiedlichsten Anwendungsgebieten, wie z.B. der Logistik, der Verhaltensforschung von Tieren, oder der Klimaforschung. Zur Analyse r{\"a}umlich-zeitlicher Daten werden neben der automatischen Analyse mittels statistischer Methoden und Data-Mining auch explorative Methoden angewendet, welche auf der interaktiven Visualisierung der Daten beruhen. Diese Methode der Analyse basiert darauf, dass Anwender in Form interaktiver Visualisierung die Daten explorieren k{\"o}nnen, wodurch die menschliche Wahrnehmung sowie das Wissen der User genutzt werden, um Muster zu erkennen und dadurch einen Einblick in die Daten zu erlangen. Diese Arbeit beschreibt ein Software-Framework f{\"u}r die Visualisierung r{\"a}umlich-zeitlicher Daten, welches GPU-basierte Techniken beinhaltet, um eine interaktive Visualisierung und Exploration großer r{\"a}umlich-zeitlicher Datens{\"a}tze zu erm{\"o}glichen. Die entwickelten Techniken umfassen Datenhaltung, Prozessierung und Rendering und erm{\"o}glichen es, große Datenmengen in Echtzeit zu prozessieren und zu visualisieren. Die Hauptbeitr{\"a}ge der Arbeit umfassen: - Konzept und Implementierung einer GPU-zentrierten Visualisierungspipeline. Die beschriebenen Techniken basieren auf dem Konzept einer GPU-zentrierten Visualisierungspipeline, in welcher alle Stufen -- Prozessierung,Mapping, Rendering -- auf der GPU ausgef{\"u}hrt werden. Bei diesem Konzept werden die r{\"a}umlich-zeitlichen Daten direkt im GPU-Speicher abgelegt. W{\"a}hrend des Rendering-Prozesses werden dann mittels Shader-Programmen die Daten prozessiert, gefiltert, ein Mapping auf visuelle Attribute vorgenommen, und schließlich die Geometrien f{\"u}r die Visualisierung erzeugt. Datenprozessierung, Filtering und Mapping k{\"o}nnen daher in Echtzeit ausgef{\"u}hrt werden. Dies erm{\"o}glicht es Usern, die Mapping-Parameter sowie den gesamten Visualisierungsprozess interaktiv zu steuern und zu kontrollieren. - Interaktive Visualisierung attributierter 3D-Trajektorien. Es wurde eine Visualisierungsmethode f{\"u}r die interaktive Exploration einer großen Anzahl von 3D Bewegungstrajektorien entwickelt. Die Trajektorien werden dabei innerhalb einer virtuellen geographischen Umgebung in Form von einfachen Geometrien, wie Linien, B{\"a}ndern, Kugeln oder R{\"o}hren dargestellt. Durch interaktives Mapping k{\"o}nnen Attributwerte der Trajektorien oder einzelner Messpunkte auf visuelle Eigenschaften abgebildet werden. Hierzu stehen Form, H{\"o}he, Gr{\"o}ße, Farbe, Textur, sowie Animation zur Verf{\"u}gung. Mithilfe dieses dynamischen Mappings wurden außerdem verschiedene Visualisierungsmethoden implementiert, wie z.B. eine Focus+Context-Visualisierung von Trajektorien mithilfe von interaktiven Dichtekarten, sowie einer Space-Time-Cube-Visualisierung zur Darstellung des zeitlichen Ablaufs einzelner Bewegungen. - Interaktive Visualisierung geographischer Netzwerke. Es wurde eine Visualisierungsmethode zur interaktiven Exploration geo-referenzierter Netzwerke entwickelt, welche die Visualisierung von Netzwerken mit einer großen Anzahl von Knoten und Kanten erm{\"o}glicht. Um die Analyse von Netzwerken verschiedener Gr{\"o}ßen und in unterschiedlichen Kontexten zu erm{\"o}glichen, stehen mehrere virtuelle geographische Umgebungen zur Verf{\"u}gung, wie bspw. ein virtueller 3D-Globus, als auch 2D-Karten mit unterschiedlichen geographischen Projektionen. Zur interaktiven Analyse dieser Netzwerke stehen interaktive Tools wie Filterung, Mapping und Selektion zur Verf{\"u}gung. Des weiteren wurden Visualisierungsmethoden f{\"u}r verschiedene Arten von Netzwerken, wie z.B. 3D-Netzwerke und zeitlich ver{\"a}nderliche Netzwerke, implementiert. Zur Demonstration des Konzeptes wurden interaktive Tools f{\"u}r zwei unterschiedliche Anwendungsf{\"a}lle entwickelt. Das erste beinhaltet die Visualisierung attributierter 3D-Trajektorien, welche die Bewegungen von Flugzeugen um einen Flughafen beschreiben. Es erm{\"o}glicht Nutzern, die Trajektorien von ankommenden und startenden Flugzeugen {\"u}ber den Zeitraum eines Monats interaktiv zu explorieren und zu analysieren. Durch Verwendung der interaktiven Visualisierungsmethoden f{\"u}r 3D-Trajektorien und interaktiven Dichtekarten k{\"o}nnen Einblicke in die Daten gewonnen werden, wie beispielsweise h{\"a}ufig genutzte Flugkorridore, typische sowie untypische Bewegungsmuster, oder ungew{\"o}hnliche Vorkommnisse wie Fehlanfl{\"u}ge. Der zweite Anwendungsfall beinhaltet die Visualisierung von Klimanetzwerken, welche geographischen Netzwerken in der Klimaforschung darstellen. Klimanetzwerke repr{\"a}sentieren die Dynamiken im Klimasystem durch eine Netzwerkstruktur, die die statistische Beziehungen zwischen Orten beschreiben. Das entwickelte Tool erm{\"o}glicht es Analysten, diese großen Netzwerke interaktiv zu explorieren und dadurch die Struktur des Netzwerks zu analysieren und mit den geographischen Daten in Beziehung zu setzen. Interaktive Filterung und Selektion erm{\"o}glichen es, Muster in den Daten zu identifizieren, und so bspw. Cluster in der Netzwerkstruktur oder Str{\"o}mungsmuster zu erkennen.}, language = {en} } @phdthesis{Chen2023, author = {Chen, Junchao}, title = {A self-adaptive resilient method for implementing and managing the high-reliability processing system}, doi = {10.25932/publishup-58313}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-583139}, school = {Universit{\"a}t Potsdam}, pages = {XXIII, 167}, year = {2023}, abstract = {As a result of CMOS scaling, radiation-induced Single-Event Effects (SEEs) in electronic circuits became a critical reliability issue for modern Integrated Circuits (ICs) operating under harsh radiation conditions. SEEs can be triggered in combinational or sequential logic by the impact of high-energy particles, leading to destructive or non-destructive faults, resulting in data corruption or even system failure. Typically, the SEE mitigation methods are deployed statically in processing architectures based on the worst-case radiation conditions, which is most of the time unnecessary and results in a resource overhead. Moreover, the space radiation conditions are dynamically changing, especially during Solar Particle Events (SPEs). The intensity of space radiation can differ over five orders of magnitude within a few hours or days, resulting in several orders of magnitude fault probability variation in ICs during SPEs. This thesis introduces a comprehensive approach for designing a self-adaptive fault resilient multiprocessing system to overcome the static mitigation overhead issue. This work mainly addresses the following topics: (1) Design of on-chip radiation particle monitor for real-time radiation environment detection, (2) Investigation of space environment predictor, as support for solar particle events forecast, (3) Dynamic mode configuration in the resilient multiprocessing system. Therefore, according to detected and predicted in-flight space radiation conditions, the target system can be configured to use no mitigation or low-overhead mitigation during non-critical periods of time. The redundant resources can be used to improve system performance or save power. On the other hand, during increased radiation activity periods, such as SPEs, the mitigation methods can be dynamically configured appropriately depending on the real-time space radiation environment, resulting in higher system reliability. Thus, a dynamic trade-off in the target system between reliability, performance and power consumption in real-time can be achieved. All results of this work are evaluated in a highly reliable quad-core multiprocessing system that allows the self-adaptive setting of optimal radiation mitigation mechanisms during run-time. Proposed methods can serve as a basis for establishing a comprehensive self-adaptive resilient system design process. Successful implementation of the proposed design in the quad-core multiprocessor shows its application perspective also in the other designs.}, language = {en} } @phdthesis{Mussil2008, author = {Mussil, Stephan}, title = {A secret in spite of itself : recursive meaning in Henry James's 'The Figure in the Carpet'}, issn = {0028-6087}, year = {2008}, language = {en} } @phdthesis{Zhang2011, author = {Zhang, Zhuodong}, title = {A regional scale study of wind erosion in the Xilingele grassland based on computational fluid dynamics}, address = {Potsdam}, pages = {143 S.}, year = {2011}, language = {en} } @phdthesis{Mueller2012, author = {M{\"u}ller, J{\"u}rgen J.}, title = {A real-time in-memory discovery service}, address = {Potsdam}, pages = {XXV, 172 S.}, year = {2012}, language = {en} } @phdthesis{Marx2016, author = {Marx, Robert}, title = {A quantitative model of spatial correlations in parametric down conversion for investigating complementarity at a double slit}, school = {Universit{\"a}t Potsdam}, pages = {135}, year = {2016}, language = {en} } @phdthesis{Gaetjen2023, author = {G{\"a}tjen, Dominic}, title = {A Pichia pastoris surface display system for the efficient screening of high-producing antibody clones}, school = {Universit{\"a}t Potsdam}, pages = {120}, year = {2023}, abstract = {Pichia pastoris (syn. Komagataella phaffi) is a distinguished expression system widely used in industrial production processes. Recent molecular research has focused on numerous approaches to increase recombinant protein yield in P. pastoris. For example, the design of expression vectors and synthetic genetic elements, gene copy number optimization, or co-expression of helper proteins (transcription factors, chaperones, etc.). However, high clonal variability of transformants and low screening throughput have hampered significant success. To enhance screening capacities, display-based methodologies inherit the potential for efficient isolation of producer clones via fluorescence-activated cell sorting (FACS). Therefore, this study focused on developing a novel clone selection method that is based on the non-covalent attachment of Fab fragments on the P. pastoris cell surface to be applicable for FACS. Initially, a P. pastoris display system was developed, which is a prerequisite for the surface capture of secreted Fabs. A Design of Experiments approach was applied to analyze the influence of various genetic elements on antibody fragment display. The combined P. pastoris formaldehyde dehydrogenase promoter (PFLD1), Saccharomyces cerevisiae invertase 2 signal peptide (ScSUC2), - agglutinin (ScSAG1) anchor protein, and the ARS of Kluyveromyces lactis (panARS) conferred highest display levels. Subsequently, eight single-chain variable fragments (scFv) specific for the constant part of the Fab heavy or light chain were individually displayed in P. pastoris. Among the tested scFvs, the anti-human CH1 IgG domain scFv allowed the most efficient Fab capture detected by flow cytometry. Irrespective of the Fab sequence, exogenously added as well as simultaneously secreted Fabs were successfully captured on the cell surface. Furthermore, Fab secretion capacities were shown to correlate to the level of surface-bound Fabs as demonstrated for characterized producer clones. Flow-sorted clones presenting high amounts of Fabs showed an increase in median Fab titers (factor of 21 to 49) compared to unsorted clones when screened in deep-well plates. For selected candidates, improved functional Fab yields of sorted cells vs. unsorted cells were confirmed in an upscaled shake flask production. Since the scFv capture matrix was encoded on an episomal plasmid with inherently unstable autonomously replicating sequences (ARS), efficient plasmid curing was observed after removing the selective pressure. Hence, sorted clones could be immediately used for production without the need to modify the expression host or vector. The resulting switchable display/secretion system provides a streamlined approach for the isolation of Fab producers and subsequent Fab production.}, language = {en} } @phdthesis{SanchezBarriga2010, author = {S{\´a}nchez-Barriga, Jaime}, title = {A photoemission study of quasiparticle excitations, electron-correlation effects and magnetization dynamics in thin magnetic systems}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-48499}, school = {Universit{\"a}t Potsdam}, year = {2010}, abstract = {This thesis is focused on the electronic, spin-dependent and dynamical properties of thin magnetic systems. Photoemission-related techniques are combined with synchrotron radiation to study the spin-dependent properties of these systems in the energy and time domains. In the first part of this thesis, the strength of electron correlation effects in the spin-dependent electronic structure of ferromagnetic bcc Fe(110) and hcp Co(0001) is investigated by means of spin- and angle-resolved photoemission spectroscopy. The experimental results are compared to theoretical calculations within the three-body scattering approximation and within the dynamical mean-field theory, together with one-step model calculations of the photoemission process. From this comparison it is demonstrated that the present state of the art many-body calculations, although improving the description of correlation effects in Fe and Co, give too small mass renormalizations and scattering rates thus demanding more refined many-body theories including nonlocal fluctuations. In the second part, it is shown in detail monitoring by photoelectron spectroscopy how graphene can be grown by chemical vapour deposition on the transition-metal surfaces Ni(111) and Co(0001) and intercalated by a monoatomic layer of Au. For both systems, a linear E(k) dispersion of massless Dirac fermions is observed in the graphene pi-band in the vicinity of the Fermi energy. Spin-resolved photoemission from the graphene pi-band shows that the ferromagnetic polarization of graphene/Ni(111) and graphene/Co(0001) is negligible and that graphene on Ni(111) is after intercalation of Au spin-orbit split by the Rashba effect. In the last part, a time-resolved x-ray magnetic circular dichroic-photoelectron emission microscopy study of a permalloy platelet comprising three cross-tie domain walls is presented. It is shown how a fast picosecond magnetic response in the precessional motion of the magnetization can be induced by means of a laser-excited photoswitch. From a comparision to micromagnetic calculations it is demonstrated that the relatively high precessional frequency observed in the experiments is directly linked to the nature of the vortex/antivortex dynamics and its response to the magnetic perturbation. This includes the time-dependent reversal of the vortex core polarization, a process which is beyond the limit of detection in the present experiments.}, language = {en} } @phdthesis{Schoenheit2011, author = {Sch{\"o}nheit, J{\"o}rg}, title = {A phagocyte-specific Irf8 gene enhancer establishes early conventional dendritic cell commitment}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-55482}, school = {Universit{\"a}t Potsdam}, year = {2011}, abstract = {Haematopoietic development is a complex process that is strictly hierarchically organized. Here, the phagocyte lineages are a very heterogeneous cell compartment with specialized functions in innate immunity and induction of adaptive immune responses. Their generation from a common precursor must be tightly controlled. Interference within lineage formation programs for example by mutation or change in expression levels of transcription factors (TF) is causative to leukaemia. However, the molecular mechanisms driving specification into distinct phagocytes remain poorly understood. In the present study I identify the transcription factor Interferon Regulatory Factor 8 (IRF8) as the specification factor of dendritic cell (DC) commitment in early phagocyte precursors. Employing an IRF8 reporter mouse, I showed the distinct Irf8 expression in haematopoietic lineage diversification and isolated a novel bone marrow resident progenitor which selectively differentiates into CD8α+ conventional dendritic cells (cDCs) in vivo. This progenitor strictly depends on Irf8 expression to properly establish its transcriptional DC program while suppressing a lineage-inappropriate neutrophile program. Moreover, I demonstrated that Irf8 expression during this cDC commitment-step depends on a newly discovered myeloid-specific cis-enhancer which is controlled by the haematopoietic transcription factors PU.1 and RUNX1. Interference with their binding leads to abrogation of Irf8 expression, subsequently to disturbed cell fate decisions, demonstrating the importance of these factors for proper phagocyte cell development. Collectively, these data delineate a transcriptional program establishing cDC fate choice with IRF8 in its center.}, language = {en} } @phdthesis{D'Agata2014, author = {D'Agata, Valeria Costanza}, title = {A partire dalla Somaestetica di Shusterman}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-72650}, school = {Universit{\"a}t Potsdam}, pages = {280}, year = {2014}, abstract = {Con la sua proposta di una Somaestetica, articolata fondamentalmente in analitica, pragmatica e pratica, Richard Shusterman intende in primo luogo fornire e creare una cornice metodologica, un orientamento unitario che sia in grado di rintracciare, ricostruire e portare a manifestazione - all'interno di eterogenee riflessioni teoriche e pratiche somatiche - la comune esigenza di ridare luce alla dimensione corporea come modo primario di essere nel mondo. Recuperando l'accezione baumgarteniana di Aesthetica come gnoseologia inferiore, arte dell'analogo della ragione, scienza della conoscenza sensibile, la somaestetica intende dare nuovo impulso alla pi{\`u} profonda radice di estetica e filosofia che coglie la vita nel suo processo di metamorfosi e rigenerazione continua, in quel respiro vitale che, per quanto possa diventare cosciente, non {\`e} mai totalmente afferrabile dalla ragione discorsiva, situandosi piuttosto in quello spazio primordiale in cui coscienza e corpo si coappartengono, in cui il soggetto non {\`e} ancora individualizzabile perch{\´e} fuso con l'ambiente, non {\`e} totalmente privatizzabile perch{\´e} intrinsecamente plasmato dal tessuto sociale cui egli stesso conferisce dinamicamente forma. A partire dunque dalla rivalutazione del concetto di Aisthesis la disciplina somaestetica mira ad una intensificazione di sensorialit{\`a}, percezione, emozione, commozione, rintracciando proprio nel Soma la fonte di quelle facolt{\`a} "inferiori" irriducibili a quelle puramente intellettuali, che permettono di accedere alle dimensioni qualitative dell'esperienza, di portare a manifestazione e far maturare l'essere umano come essere indivisibile che non si lascia incontrare da un pensiero che ne rinnega l'unitariet{\`a} in nome di fittizie e laceranti distinzioni dicotomiche. Nel corpo infatti si radicano in modo silente regole, convenzioni, norme e valori socioculturali che determinano e talvolta limitano la configurazione ed espressione di sensazioni, percezioni, cognizioni, pensieri, azioni, volizioni, disposizioni di un soggetto da sempre inserito in una Mitwelt (mondo comune), ed {\`e} allora proprio al corpo che bisogna rivolgersi per riconfigurare pi{\`u} autentiche modalit{\`a} di espressione del soggetto che crea equilibri dinamici per mantenere una relazione di coerenza con il pi{\`u} ampio contesto sociale, culturale, ambientale. L'apertura al confronto con eterogenee posizioni filosofiche e l'intrinseca multidisciplinariet{\`a} spiegano la centralit{\`a} nel contemporaneo dibattito estetologico internazionale della Somaestetica che, rivolgendosi tanto ad una formulazione teorica quanto ad una concreta applicazione pratica, intende rivalutare il soma come corporeit{\`a} intelligente, senziente, intenzionale e attiva, non riducibile all'accezione peccaminosa di caro (mero corpo fisico privo di vita e sensazione). Attraverso la riflessione e la pratica di tecniche di coscienza somatica si portano in primo piano i modi in cui il sempre pi{\`u} consapevole rapporto con la propria corporeit{\`a} come mediatamente esperita e immediatamente vissuta, sentita, offre occasioni autentiche di realizzazione progressiva di s{\´e} innanzitutto come persone, capaci di autocoltivazione, di riflessione cosciente sulle proprie abitudini incorporate, di ristrutturazione creativa di s{\´e}, di intensificata percezione e apprezzamento sensoriale sia nel concreto agire quotidiano, sia nella dimensione pi{\`u} propriamente estetologica di ricezione, fruizione e creazione artistica. L'indirizzo essenzialmente pragmatista della riflessione di Shusterman traccia cos{\`i} una concezione fondamentalmente relazionale dell'estetica in grado di porsi proprio nel movimento e nel rapporto continuamente diveniente di vera e propria trasformazione e passaggio tra le dimensioni fisiche, proprio-corporee, psichiche e spirituali del soggetto la cui interazione, ed il cui reciproco riversarsi le une nelle altre, pu{\`o} risultare profondamente arricchito attraverso una progressiva e sempre crescente consapevolizzazione della ricchezza della dimensione corporea in quanto intenzionale, percettiva, senziente, volitiva, tanto quanto vulnerabile, limitante, caduca, patica. Il presente lavoro intende ripercorrere ed approfondire alcuni dei principali referenti di Shusterman, focalizzandosi prevalentemente sulla radice pragmatista della sua proposta e sul confronto con il dibattito di area tedesca tra estetica, antropologia filosofica, neofenomenologia e antropologia medica, per riguadagnare una nozione di soma che proprio a partire dal contrasto, dall'impatto irriducibile con la potenza annullante delle situazioni limite, della crisi possa acquisire un pi{\`u} complesso e ricco valore armonizzante delle intrinseche e molteplici dimensioni che costituiscono il tessuto della soggettivit{\`a} incarnata. In particolare il primo capitolo (1. Somaestetica) chiarisce le radici essenzialmente pragmatiste della proposta shustermaniana e mostra come sia possibile destrutturare e dunque riconfigurare radicati modi di esperienza, rendendo coscienti abitudini e modi di vivere che si fissano a livello somatico in modo per lo pi{\`u} inavvertito. Il confronto con la nozione di Habitus, di cui Pierre Bourdieu mette brillantemente in luce l'invisibile e socialmente determinata matrice somatica, lascia scorgere come ogni manifestazione umana sia sostenuta dall'incorporazione di norme, credenze, valori che determinano e talvolta limitano l'espressione, lo sviluppo, persino le predisposizioni e le inclinazioni degli individui. Ed {\`e} proprio intervenendo a questo livello che si pu{\`o} restituire libert{\`a} alle scelte e aprirsi cos{\`i} alle dimensioni essenzialmente qualitative dell'esperienza che, nell'accezione deweyana {\`e} un insieme olistico unitario e coeso che fa da sfondo alle relazioni organismo-ambiente, un intreccio inestricabile di teoria e prassi, particolare e universale, psiche e soma, ragione ed emozione, percettivo e concettuale, insomma quell'immediata conoscenza corporea che struttura lo sfondo di manifestazione della coscienza.}, language = {it} } @phdthesis{TabaresJimenez2021, author = {Tabares Jimenez, Ximena del Carmen}, title = {A palaeoecological approach to savanna dynamics and shrub encroachment in Namibia}, doi = {10.25932/publishup-49281}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-492815}, school = {Universit{\"a}t Potsdam}, pages = {121}, year = {2021}, abstract = {The spread of shrubs in Namibian savannas raises questions about the resilience of these ecosystems to global change. This makes it necessary to understand the past dynamics of the vegetation, since there is no consensus on whether shrub encroachment is a new phenomenon, nor on its main drivers. However, a lack of long-term vegetation datasets for the region and the scarcity of suitable palaeoecological archives, makes reconstructing past vegetation and land cover of the savannas a challenge. To help meet this challenge, this study addresses three main research questions: 1) is pollen analysis a suitable tool to reflect the vegetation change associated with shrub encroachment in savanna environments? 2) Does the current encroached landscape correspond to an alternative stable state of savanna vegetation? 3) To what extent do pollen-based quantitative vegetation reconstructions reflect changes in past land cover? The research focuses on north-central Namibia, where despite being the region most affected by shrub invasion, particularly since the 21st century, little is known about the dynamics of this phenomenon. Field-based vegetation data were compared with modern pollen data to assess their correspondence in terms of composition and diversity along precipitation and grazing intensity gradients. In addition, two sediment cores from Lake Otjikoto were analysed to reveal changes in vegetation composition that have occurred in the region over the past 170 years and their possible drivers. For this, a multiproxy approach (fossil pollen, sedimentary ancient DNA (sedaDNA), biomarkers, compound specific carbon (δ13C) and deuterium (δD) isotopes, bulk carbon isotopes (δ13Corg), grain size, geochemical properties) was applied at high taxonomic and temporal resolution. REVEALS modelling of the fossil pollen record from Lake Otjikoto was run to quantitatively reconstruct past vegetation cover. For this, we first made pollen productivity estimates (PPE) of the most relevant savanna taxa in the region using the extended R-value model and two pollen dispersal options (Gaussian plume model and Lagrangian stochastic model). The REVEALS-based vegetation reconstruction was then validated using remote sensing-based regional vegetation data. The results show that modern pollen reflects the composition of the vegetation well, but diversity less well. Interestingly, precipitation and grazing explain a significant amount of the compositional change in the pollen and vegetation spectra. The multiproxy record shows that a state change from open Combretum woodland to encroached Terminalia shrubland can occur over a century, and that the transition between states spans around 80 years and is characterized by a unique vegetation composition. This transition is supported by gradual environmental changes induced by management (i.e. broad-scale logging for the mining industry, selective grazing and reduced fire activity associated with intensified farming) and related land-use change. Derived environmental changes (i.e. reduced soil moisture, reduced grass cover, changes in species composition and competitiveness, reduced fire intensity) may have affected the resilience of Combretum open woodlands, making them more susceptible to change to an encroached state by stochastic events such as consecutive years of precipitation and drought, and by high concentrations of pCO2. We assume that the resulting encroached state was further stabilized by feedback mechanisms that favour the establishment and competitiveness of woody vegetation. The REVEALS-based quantitative estimates of plant taxa indicate the predominance of a semi-open landscape throughout the 20th century and a reduction in grass cover below 50\% since the 21st century associated with the spread of encroacher woody taxa. Cover estimates show a close match with regional vegetation data, providing support for the vegetation dynamics inferred from multiproxy analyses. Reasonable PPEs were made for all woody taxa, but not for Poaceae. In conclusion, pollen analysis is a suitable tool to reconstruct past vegetation dynamics in savannas. However, because pollen cannot identify grasses beyond family level, a multiproxy approach, particularly the use of sedaDNA, is required. I was able to separate stable encroached states from mere woodland phases, and could identify drivers and speculate about related feedbacks. In addition, the REVEALS-based quantitative vegetation reconstruction clearly reflects the magnitude of the changes in the vegetation cover that occurred during the last 130 years, despite the limitations of some PPEs. This research provides new insights into pollen-vegetation relationships in savannas and highlights the importance of multiproxy approaches when reconstructing past vegetation dynamics in semi-arid environments. It also provides the first time series with sufficient taxonomic resolution to show changes in vegetation composition during shrub encroachment, as well as the first quantitative reconstruction of past land cover in the region. These results help to identify the different stages in savanna dynamics and can be used to calibrate predictive models of vegetation change, which are highly relevant to land management.}, language = {en} } @phdthesis{Gebauer2008, author = {Gebauer, Denis}, title = {A novel view on the early stage of crystallization}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-19818}, school = {Universit{\"a}t Potsdam}, year = {2008}, abstract = {This thesis provides a novel view on the early stage of crystallization utilizing calcium carbonate as a model system. Calcium carbonate is of great economical, scientific and ecological importance, because it is a major part of water hardness, the most abundant Biomineral and forms huge amounts of geological sediments thus binding large amounts of carbon dioxide. The primary experiments base on the evolution of supersaturation via slow addition of dilute calcium chloride solution into dilute carbonate buffer. The time-dependent measurement of the Ca2+ potential and concurrent pH = constant titration facilitate the calculation of the amount of calcium and carbonate ions bound in pre-nucleation stage clusters, which have never been detected experimentally so far, and in the new phase after nucleation, respectively. Analytical Ultracentrifugation independently proves the existence of pre-nucleation stage clusters, and shows that the clusters forming at pH = 9.00 have a proximately time-averaged size of altogether 70 calcium and carbonate ions. Both experiments show that pre-nucleation stage cluster formation can be described by means of equilibrium thermodynamics. Effectively, the cluster formation equilibrium is physico-chemically characterized by means of a multiple-binding equilibrium of calcium ions to a 'lattice' of carbonate ions. The evaluation gives GIBBS standard energy for the formation of calcium/carbonate ion pairs in clusters, which exhibits a maximal value of approximately 17.2 kJ mol^-1 at pH = 9.75 and relates to a minimal binding strength in clusters at this pH-value. Nucleated calcium carbonate particles are amorphous at first and subsequently become crystalline. At high binding strength in clusters, only calcite (the thermodynamically stable polymorph) is finally obtained, while with decreasing binding strength in clusters, vaterite (the thermodynamically least stable polymorph) and presumably aragonite (the thermodynamically intermediate stable polymorph) are obtained additionally. Concurrently, two different solubility products of nucleated amorphous calcium carbonate (ACC) are detected at low binding strength and high binding strength in clusters (ACC I 3.1EE-8 M^2, ACC II 3.8EE-8 M^2), respectively, indicating the precipitation of at least two different ACC species, while the clusters provide the precursor species of ACC. It is proximate that ACC I may relate to calcitic ACC -i.e. ACC exhibiting short range order similar to the long range order of calcite and that ACC II may relate to vateritic ACC, which will subsequently transform into the particular crystalline polymorph as discussed in the literature, respectively. Detailed analysis of nucleated particles forming at minimal binding strength in clusters (pH = 9.75) by means of SEM, TEM, WAXS and light microscopy shows that predominantly vaterite with traces of calcite forms. The crystalline particles of early stages are composed of nano-crystallites of approximately 5 to 10 nm size, respectively, which are aligned in high mutual order as in mesocrystals. The analyses of precipitation at pH = 9.75 in presence of additives -polyacrylic acid (pAA) as a model compound for scale inhibitors and peptides exhibiting calcium carbonate binding affinity as model compounds for crystal modifiers- shows that ACC I and ACC II are precipitated in parallel: pAA stabilizes ACC II particles against crystallization leading to their dissolution for the benefit of crystals that form from ACC I and exclusively calcite is finally obtained. Concurrently, the peptide additives analogously inhibit the formation of calcite and exclusively vaterite is finally obtained in case of one of the peptide additives. These findings show that classical nucleation theory is hardly applicable for the nucleation of calcium carbonate. The metastable system is stabilized remarkably due to cluster formation, while clusters forming by means of equilibrium thermodynamics are the nucleation relevant species and not ions. Most likely, the concept of cluster formation is a common phenomenon occurring during the precipitation of hardly soluble compounds as qualitatively shown for calcium oxalate and calcium phosphate. This finding is important for the fundamental understanding of crystallization and nucleation-inhibition and modification by additives with impact on materials of huge scientific and industrial importance as well as for better understanding of the mass transport in crystallization. It can provide a novel basis for simulation and modelling approaches. New mechanisms of scale formation in Bio- and Geomineralization and also in scale inhibition on the basis of the newly reported reaction channel need to be considered.}, language = {en} } @phdthesis{Wang2013, author = {Wang, Ting}, title = {A novel R2R3 MYB-like transcription factor regulates ABA mediated stress response and leaf growth in Arabidopsis}, address = {Potsdam}, pages = {102 S.}, year = {2013}, language = {en} } @phdthesis{RudolphMohr2013, author = {Rudolph-Mohr, Nicole}, title = {A novel non-invasive optical method for quantitative visualization of pH and oxygen dynamics in soils}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-66993}, school = {Universit{\"a}t Potsdam}, year = {2013}, abstract = {In soils and sediments there is a strong coupling between local biogeochemical processes and the distribution of water, electron acceptors, acids and nutrients. Both sides are closely related and affect each other from small scale to larger scales. Soil structures such as aggregates, roots, layers or macropores enhance the patchiness of these distributions. At the same time it is difficult to access the spatial distribution and temporal dynamics of these parameter. Noninvasive imaging techniques with high spatial and temporal resolution overcome these limitations. And new non-invasive techniques are needed to study the dynamic interaction of plant roots with the surrounding soil, but also the complex physical and chemical processes in structured soils. In this study we developed an efficient non-destructive in-situ method to determine biogeochemical parameters relevant to plant roots growing in soil. This is a quantitative fluorescence imaging method suitable for visualizing the spatial and temporal pH changes around roots. We adapted the fluorescence imaging set-up and coupled it with neutron radiography to study simultaneously root growth, oxygen depletion by respiration activity and root water uptake. The combined set up was subsequently applied to a structured soil system to map the patchy structure of oxic and anoxic zones induced by a chemical oxygen consumption reaction for spatially varying water contents. Moreover, results from a similar fluorescence imaging technique for nitrate detection were complemented by a numerical modeling study where we used imaging data, aiming to simulate biodegradation under anaerobic, nitrate reducing conditions.}, language = {en} } @phdthesis{Rackwitz2016, author = {Rackwitz, Jenny}, title = {A novel approach to study low-energy electron-induced damage to DNA oligonucleotides}, school = {Universit{\"a}t Potsdam}, pages = {137}, year = {2016}, language = {en} } @phdthesis{Pellizzer2016, author = {Pellizzer, Tommaso}, title = {A novel approach to identify plastidic factors for plastome genome incompatibility and evidence for the central involvement of the chloroplast in leaf shaping}, school = {Universit{\"a}t Potsdam}, pages = {136}, year = {2016}, language = {en} } @phdthesis{Falter2016, author = {Falter, Daniela}, title = {A novel approach for large-scale flood risk assessments}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-90239}, school = {Universit{\"a}t Potsdam}, pages = {95}, year = {2016}, abstract = {In the past, floods were basically managed by flood control mechanisms. The focus was set on the reduction of flood hazard. The potential consequences were of minor interest. Nowadays river flooding is increasingly seen from the risk perspective, including possible consequences. Moreover, the large-scale picture of flood risk became increasingly important for disaster management planning, national risk developments and the (re-) insurance industry. Therefore, it is widely accepted that risk-orientated flood management ap-proaches at the basin-scale are needed. However, large-scale flood risk assessment methods for areas of several 10,000 km² are still in early stages. Traditional flood risk assessments are performed reach wise, assuming constant probabilities for the entire reach or basin. This might be helpful on a local basis, but where large-scale patterns are important this approach is of limited use. Assuming a T-year flood (e.g. 100 years) for the entire river network is unrealistic and would lead to an overestimation of flood risk at the large scale. Due to the lack of damage data, additionally, the probability of peak discharge or rainfall is usually used as proxy for damage probability to derive flood risk. With a continuous and long term simulation of the entire flood risk chain, the spatial variability of probabilities could be consider and flood risk could be directly derived from damage data in a consistent way. The objective of this study is the development and application of a full flood risk chain, appropriate for the large scale and based on long term and continuous simulation. The novel approach of 'derived flood risk based on continuous simulations' is introduced, where the synthetic discharge time series is used as input into flood impact models and flood risk is directly derived from the resulting synthetic damage time series. The bottleneck at this scale is the hydrodynamic simu-lation. To find suitable hydrodynamic approaches for the large-scale a benchmark study with simplified 2D hydrodynamic models was performed. A raster-based approach with inertia formulation and a relatively high resolution of 100 m in combination with a fast 1D channel routing model was chosen. To investigate the suitability of the continuous simulation of a full flood risk chain for the large scale, all model parts were integrated into a new framework, the Regional Flood Model (RFM). RFM consists of the hydrological model SWIM, a 1D hydrodynamic river network model, a 2D raster based inundation model and the flood loss model FELMOps+r. Subsequently, the model chain was applied to the Elbe catchment, one of the largest catchments in Germany. For the proof-of-concept, a continuous simulation was per-formed for the period of 1990-2003. Results were evaluated / validated as far as possible with available observed data in this period. Although each model part introduced its own uncertainties, results and runtime were generally found to be adequate for the purpose of continuous simulation at the large catchment scale. Finally, RFM was applied to a meso-scale catchment in the east of Germany to firstly perform a flood risk assessment with the novel approach of 'derived flood risk assessment based on continuous simulations'. Therefore, RFM was driven by long term synthetic meteorological input data generated by a weather generator. Thereby, a virtual time series of climate data of 100 x 100 years was generated and served as input to RFM providing subsequent 100 x 100 years of spatially consistent river discharge series, inundation patterns and damage values. On this basis, flood risk curves and expected annual damage could be derived directly from damage data, providing a large-scale picture of flood risk. In contrast to traditional flood risk analysis, where homogenous return periods are assumed for the entire basin, the presented approach provides a coherent large-scale picture of flood risk. The spatial variability of occurrence probability is respected. Additionally, data and methods are consistent. Catchment and floodplain processes are repre-sented in a holistic way. Antecedent catchment conditions are implicitly taken into account, as well as physical processes like storage effects, flood attenuation or channel-floodplain interactions and related damage influencing effects. Finally, the simulation of a virtual period of 100 x 100 years and consequently large data set on flood loss events enabled the calculation of flood risk directly from damage distributions. Problems associated with the transfer of probabilities in rainfall or peak runoff to probabilities in damage, as often used in traditional approaches, are bypassed. RFM and the 'derived flood risk approach based on continuous simulations' has the potential to provide flood risk statements for national planning, re-insurance aspects or other questions where spatially consistent, large-scale assessments are required.}, language = {en} } @phdthesis{Oskinova2012, author = {Oskinova, Lida}, title = {A new understanding of the structured winds from massive stars : the implications for their X-ray emission, mass-loss diagnostics, and feedback}, address = {Potsdam}, year = {2012}, language = {en} } @phdthesis{Eisinger2007, author = {Eisinger, Dirk}, title = {A new management model for developing small scale contingency plans of rabies}, address = {Potsdam}, pages = {115 S. : graph. Darst.}, year = {2007}, language = {en} } @phdthesis{DereseYenesewMidiwoetal.2003, author = {Derese, Solomon and Yenesew, Abiy and Midiwo, Jacob O. and Heydenreich, Matthias and Peter, Martin G.}, title = {A new isoflavone from stem bark of Millettia dura}, issn = {1011-3924}, year = {2003}, language = {en} } @phdthesis{Ghasemzadeh2005, author = {Ghasemzadeh, Mohammad}, title = {A new algorithm for the quantified satisfiability problem, based on zero-suppressed binary decision diagrams and memoization}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-6378}, school = {Universit{\"a}t Potsdam}, year = {2005}, abstract = {Quantified Boolean formulas (QBFs) play an important role in theoretical computer science. QBF extends propositional logic in such a way that many advanced forms of reasoning can be easily formulated and evaluated. In this dissertation we present our ZQSAT, which is an algorithm for evaluating quantified Boolean formulas. ZQSAT is based on ZBDD: Zero-Suppressed Binary Decision Diagram , which is a variant of BDD, and an adopted version of the DPLL algorithm. It has been implemented in C using the CUDD: Colorado University Decision Diagram package. The capability of ZBDDs in storing sets of subsets efficiently enabled us to store the clauses of a QBF very compactly and let us to embed the notion of memoization to the DPLL algorithm. These points led us to implement the search algorithm in such a way that we could store and reuse the results of all previously solved subformulas with a little overheads. ZQSAT can solve some sets of standard QBF benchmark problems (known to be hard for DPLL based algorithms) faster than the best existing solvers. In addition to prenex-CNF, ZQSAT accepts prenex-NNF formulas. We show and prove how this capability can be exponentially beneficial.}, subject = {Bin{\"a}res Entscheidungsdiagramm}, language = {en} } @phdthesis{Thiede2019, author = {Thiede, Tobias}, title = {A multiscale analysis of additively manufactured lattice structures}, doi = {10.25932/publishup-47041}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-470418}, school = {Universit{\"a}t Potsdam}, pages = {xi, 97, LIII}, year = {2019}, abstract = {Additive Manufacturing (AM) in terms of laser powder-bed fusion (L-PBF) offers new prospects regarding the design of parts and enables therefore the production of lattice structures. These lattice structures shall be implemented in various industrial applications (e.g. gas turbines) for reasons of material savings or cooling channels. However, internal defects, residual stress, and structural deviations from the nominal geometry are unavoidable. In this work, the structural integrity of lattice structures manufactured by means of L-PBF was non-destructively investigated on a multiscale approach. A workflow for quantitative 3D powder analysis in terms of particle size, particle shape, particle porosity, inter-particle distance and packing density was established. Synchrotron computed tomography (CT) was used to correlate the packing density with the particle size and particle shape. It was also observed that at least about 50\% of the powder porosity was released during production of the struts. Struts are the component of lattice structures and were investigated by means of laboratory CT. The focus was on the influence of the build angle on part porosity and surface quality. The surface topography analysis was advanced by the quantitative characterisation of re-entrant surface features. This characterisation was compared with conventional surface parameters showing their complementary information, but also the need for AM specific surface parameters. The mechanical behaviour of the lattice structure was investigated with in-situ CT under compression and successive digital volume correlation (DVC). The deformation was found to be knot-dominated, and therefore the lattice folds unit cell layer wise. The residual stress was determined experimentally for the first time in such lattice structures. Neutron diffraction was used for the non-destructive 3D stress investigation. The principal stress directions and values were determined in dependence of the number of measured directions. While a significant uni-axial stress state was found in the strut, a more hydrostatic stress state was found in the knot. In both cases, strut and knot, seven directions were at least needed to find reliable principal stress directions.}, language = {en} } @phdthesis{Zass2021, author = {Zass, Alexander}, title = {A multifaceted study of marked Gibbs point processes}, doi = {10.25932/publishup-51277}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-512775}, school = {Universit{\"a}t Potsdam}, pages = {vii, 104}, year = {2021}, abstract = {This thesis focuses on the study of marked Gibbs point processes, in particular presenting some results on their existence and uniqueness, with ideas and techniques drawn from different areas of statistical mechanics: the entropy method from large deviations theory, cluster expansion and the Kirkwood--Salsburg equations, the Dobrushin contraction principle and disagreement percolation. We first present an existence result for infinite-volume marked Gibbs point processes. More precisely, we use the so-called entropy method (and large-deviation tools) to construct marked Gibbs point processes in R^d under quite general assumptions. In particular, the random marks belong to a general normed space S and are not bounded. Moreover, we allow for interaction functionals that may be unbounded and whose range is finite but random. The entropy method relies on showing that a family of finite-volume Gibbs point processes belongs to sequentially compact entropy level sets, and is therefore tight. We then present infinite-dimensional Langevin diffusions, that we put in interaction via a Gibbsian description. In this setting, we are able to adapt the general result above to show the existence of the associated infinite-volume measure. We also study its correlation functions via cluster expansion techniques, and obtain the uniqueness of the Gibbs process for all inverse temperatures β and activities z below a certain threshold. This method relies in first showing that the correlation functions of the process satisfy a so-called Ruelle bound, and then using it to solve a fixed point problem in an appropriate Banach space. The uniqueness domain we obtain consists then of the model parameters z and β for which such a problem has exactly one solution. Finally, we explore further the question of uniqueness of infinite-volume Gibbs point processes on R^d, in the unmarked setting. We present, in the context of repulsive interactions with a hard-core component, a novel approach to uniqueness by applying the discrete Dobrushin criterion to the continuum framework. We first fix a discretisation parameter a>0 and then study the behaviour of the uniqueness domain as a goes to 0. With this technique we are able to obtain explicit thresholds for the parameters z and β, which we then compare to existing results coming from the different methods of cluster expansion and disagreement percolation. Throughout this thesis, we illustrate our theoretical results with various examples both from classical statistical mechanics and stochastic geometry.}, language = {en} } @phdthesis{Horn2017, author = {Horn, Juliane}, title = {A modelling framework for exploration of a multidimensional factor causing decline in honeybee health}, school = {Universit{\"a}t Potsdam}, pages = {221}, year = {2017}, language = {en} } @phdthesis{Merlo2007, author = {Merlo, Claudia}, title = {A model of protein folding kinetics}, address = {Potsdam}, pages = {89 S. : graph. Darst.}, year = {2007}, language = {en} } @phdthesis{Mauri2014, author = {Mauri, Marco}, title = {A model for sigma factor competition in bacterial cells}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-72098}, school = {Universit{\"a}t Potsdam}, pages = {167}, year = {2014}, abstract = {Bacteria respond to changing environmental conditions by switching the global pattern of expressed genes. In response to specific environmental stresses the cell activates several stress-specific molecules such as sigma factors. They reversibly bind the RNA polymerase to form the so-called holoenzyme and direct it towards the appropriate stress response genes. In exponentially growing E. coli cells, the majority of the transcriptional activity is carried out by the housekeeping sigma factor, while stress responses are often under the control of alternative sigma factors. Different sigma factors compete for binding to a limited pool of RNA polymerase (RNAP) core enzymes, providing a mechanism for cross talk between genes or gene classes via the sharing of expression machinery. To quantitatively analyze the contribution of sigma factor competition to global changes in gene expression, we develop a thermodynamic model that describes binding between sigma factors and core RNAP at equilibrium, transcription, non-specific binding to DNA and the modulation of the availability of the molecular components. Association of housekeeping sigma factor to RNAP is generally favored by its abundance and higher binding affinity to the core. In order to promote transcription by alternative sigma subunits, the bacterial cell modulates the transcriptional efficiency in a reversible manner through several strategies such as anti-sigma factors, 6S RNA and generally any kind of transcriptional regulators (e.g. activators or inhibitors). By shifting the outcome of sigma factor competition for the core, these modulators bias the transcriptional program of the cell. The model is validated by comparison with in vitro competition experiments, with which excellent agreement is found. We observe that transcription is affected via the modulation of the concentrations of the different types of holoenzymes, so saturated promoters are only weakly affected by sigma factor competition. However, in case of overlapping promoters or promoters recognized by two types of sigma factors, we find that even saturated promoters are strongly affected. Active transcription effectively lowers the affinity between the sigma factor driving it and the core RNAP, resulting in complex cross talk effects and raising the question of how their in vitro measure is relevant in the cell. We also estimate that sigma factor competition is not strongly affected by non-specific binding of core RNAPs, sigma factors, and holoenzymes to DNA. Finally, we analyze the role of increased core RNAP availability upon the shut-down of ribosomal RNA transcription during stringent response. We find that passive up-regulation of alternative sigma-dependent transcription is not only possible, but also displays hypersensitivity based on the sigma factor competition. Our theoretical analysis thus provides support for a significant role of passive control during that global switch of the gene expression program and gives new insights into RNAP partitioning in the cell.}, language = {en} } @phdthesis{Kamprath2014, author = {Kamprath, Martin}, title = {A microfoundations perspectives on fresight and business models}, pages = {224}, year = {2014}, language = {en} } @phdthesis{Gerling2022, author = {Gerling, Marten Tobias}, title = {A microfluidic system for high-precision image-based live cell sorting using dielectrophoretic forces}, doi = {10.25932/publishup-58742}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-587421}, school = {Universit{\"a}t Potsdam}, pages = {vii, 87, VI}, year = {2022}, abstract = {An important goal in biotechnology and (bio-) medical research is the isolation of single cells from a heterogeneous cell population. These specialised cells are of great interest for bioproduction, diagnostics, drug development, (cancer) therapy and research. To tackle emerging questions, an ever finer differentiation between target cells and non-target cells is required. This precise differentiation is a challenge for a growing number of available methods. Since the physiological properties of the cells are closely linked to their morphology, it is beneficial to include their appearance in the sorting decision. For established methods, this represents a non addressable parameter, requiring new methods for the identification and isolation of target cells. Consequently, a variety of new flow-based methods have been developed and presented in recent years utilising 2D imaging data to identify target cells within a sample. As these methods aim for high throughput, the devices developed typically require highly complex fluid handling techniques, making them expensive while offering limited image quality. In this work, a new continuous flow system for image-based cell sorting was developed that uses dielectrophoresis to precisely handle cells in a microchannel. Dielectrophoretic forces are exerted by inhomogeneous alternating electric fields on polarisable particles (here: cells). In the present system, the electric fields can be switched on and off precisely and quickly by a signal generator. In addition to the resulting simple and effective cell handling, the system is characterised by the outstanding quality of the image data generated and its compatibility with standard microscopes. These aspects result in low complexity, making it both affordable and user-friendly. With the developed cell sorting system, cells could be sorted reliably and efficiently according to their cytosolic staining as well as morphological properties at different optical magnifications. The achieved purity of the target cell population was up to 95\% and about 85\% of the sorted cells could be recovered from the system. Good agreement was achieved between the results obtained and theoretical considerations. The achieved throughput of the system was up to 12,000 cells per hour. Cell viability studies indicated a high biocompatibility of the system. The results presented demonstrate the potential of image-based cell sorting using dielectrophoresis. The outstanding image quality and highly precise yet gentle handling of the cells set the system apart from other technologies. This results in enormous potential for processing valuable and sensitive cell samples.}, language = {en} } @phdthesis{Kirschbaum2009, author = {Kirschbaum, Michael}, title = {A microfluidic approach for the initiation and investigation of surface-mediated signal transduction processes on a single-cell level}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-39576}, school = {Universit{\"a}t Potsdam}, year = {2009}, abstract = {For the elucidation of the dynamics of signal transduction processes that are induced by cellular interactions, defined events along the signal transduction cascade and subsequent activation steps have to be analyzed and then also correlated with each other. This cannot be achieved by ensemble measurements because averaging biological data ignores the variability in timing and response patterns of individual cells and leads to highly blurred results. Instead, only a multi-parameter analysis at a single-cell level is able to exploit the information that is crucially needed for deducing the signaling pathways involved. The aim of this work was to develop a process line that allows the initiation of cell-cell or cell-particle interactions while at the same time the induced cellular reactions can be analyzed at various stages along the signal transduction cascade and correlated with each other. As this approach requires the gentle management of individually addressable cells, a dielectrophoresis (DEP)-based microfluidic system was employed that provides the manipulation of microscale objects with very high spatiotemporal precision and without the need of contacting the cell membrane. The system offers a high potential for automation and parallelization. This is essential for achieving a high level of robustness and reproducibility, which are key requirements in order to qualify this approach for a biomedical application. As an example process for intercellular communication, T cell activation has been chosen. The activation of the single T cells was triggered by contacting them individually with microbeads that were coated with antibodies directed against specific cell surface proteins, like the T cell receptor-associated kinase CD3 and the costimulatory molecule CD28 (CD; cluster of differentiation). The stimulation of the cells with the functionalized beads led to a rapid rise of their cytosolic Ca2+ concentration which was analyzed by a dual-wavelength ratiometric fluorescence measurement of the Ca2+-sensitive dye Fura-2. After Ca2+ imaging, the cells were isolated individually from the microfluidic system and cultivated further. Cell division and expression of the marker molecule CD69 as a late activation event of great significance were analyzed the following day and correlated with the previously recorded Ca2+ traces for each individual cell. It turned out such that the temporal profile of the Ca2+ traces between both activated and non-activated cells as well as dividing and non-dividing cells differed significantly. This shows that the pattern of Ca2+ signals in T cells can provide early information about a later reaction of the cell. As isolated cells are highly delicate objects, a precondition for these experiments was the successful adaptation of the system to maintain the vitality of single cells during and after manipulation. In this context, the influences of the microfluidic environment as well as the applied electric fields on the vitality of the cells and the cytosolic Ca2+ concentration as crucially important physiological parameters were thoroughly investigated. While a short-term DEP manipulation did not affect the vitality of the cells, they showed irregular Ca2+ transients upon exposure to the DEP field only. The rate and the strength of these Ca2+ signals depended on exposure time, electric field strength and field frequency. By minimizing their occurrence rate, experimental conditions were identified that caused the least interference with the physiology of the cell. The possibility to precisely control the exact time point of stimulus application, to simultaneously analyze short-term reactions and to correlate them with later events of the signal transduction cascade on the level of individual cells makes this approach unique among previously described applications and offers new possibilities to unravel the mechanisms underlying intercellular communication.}, language = {en} }