@article{LembckeWeber2014, author = {Lembcke, Robert and Weber, Edzard}, title = {Methode zur Modellierung und Analyse der Kommunikationsstrukturen}, series = {Handbuch prozessorientiertes Wissensmanagement}, journal = {Handbuch prozessorientiertes Wissensmanagement}, publisher = {GITO}, address = {Berlin}, isbn = {978-3-95545-026-7}, pages = {239 -- 263}, year = {2014}, language = {de} } @article{WeberLembcke2014, author = {Weber, Edzard and Lembcke, Robert}, title = {Fallstudien: Analyse der Kommunikation}, series = {Handbuch prozessorientiertes Wissensmanagment}, journal = {Handbuch prozessorientiertes Wissensmanagment}, publisher = {GITO}, address = {Berlin}, isbn = {978-3-95545-026-7}, pages = {267 -- 294}, year = {2014}, language = {de} } @article{MuellerKruegerZeier2014, author = {M{\"u}ller, J{\"u}rgen and Kr{\"u}ger, Jens and Zeier, Alexander}, title = {Unternehmensportale als Quelle f{\"u}r relevante Informationen}, series = {Handbuch prozessorientierters Wissensmanagment}, journal = {Handbuch prozessorientierters Wissensmanagment}, publisher = {GITO}, address = {Berlin}, isbn = {978-3-95545-026-7}, pages = {299 -- 307}, year = {2014}, language = {de} } @article{WeberScharff2014, author = {Weber, Edzard and Scharff, Christian}, title = {Gesch{\"a}ftsprozessanalyse und Wissensmanagement mit Hilfe Sozialer Netzwerke}, series = {Handbuch prozessorientiertes Wissensmanagement}, journal = {Handbuch prozessorientiertes Wissensmanagement}, publisher = {GITO}, address = {Berlin}, isbn = {978-3-95545-026-7}, pages = {311 -- 320}, year = {2014}, language = {de} } @phdthesis{Goswami2014, author = {Goswami, Bedartha}, title = {Uncertainties in climate data analysis}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-78312}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Scientific inquiry requires that we formulate not only what we know, but also what we do not know and by how much. In climate data analysis, this involves an accurate specification of measured quantities and a consequent analysis that consciously propagates the measurement errors at each step. The dissertation presents a thorough analytical method to quantify errors of measurement inherent in paleoclimate data. An additional focus are the uncertainties in assessing the coupling between different factors that influence the global mean temperature (GMT). Paleoclimate studies critically rely on `proxy variables' that record climatic signals in natural archives. However, such proxy records inherently involve uncertainties in determining the age of the signal. We present a generic Bayesian approach to analytically determine the proxy record along with its associated uncertainty, resulting in a time-ordered sequence of correlated probability distributions rather than a precise time series. We further develop a recurrence based method to detect dynamical events from the proxy probability distributions. The methods are validated with synthetic examples and demonstrated with real-world proxy records. The proxy estimation step reveals the interrelations between proxy variability and uncertainty. The recurrence analysis of the East Asian Summer Monsoon during the last 9000 years confirms the well-known `dry' events at 8200 and 4400 BP, plus an additional significantly dry event at 6900 BP. We also analyze the network of dependencies surrounding GMT. We find an intricate, directed network with multiple links between the different factors at multiple time delays. We further uncover a significant feedback from the GMT to the El Ni{\~n}o Southern Oscillation at quasi-biennial timescales. The analysis highlights the need of a more nuanced formulation of influences between different climatic factors, as well as the limitations in trying to estimate such dependencies.}, language = {en} } @phdthesis{Heise2014, author = {Heise, Arvid}, title = {Data cleansing and integration operators for a parallel data analytics platform}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-77100}, school = {Universit{\"a}t Potsdam}, pages = {ii, 179}, year = {2014}, abstract = {The data quality of real-world datasets need to be constantly monitored and maintained to allow organizations and individuals to reliably use their data. Especially, data integration projects suffer from poor initial data quality and as a consequence consume more effort and money. Commercial products and research prototypes for data cleansing and integration help users to improve the quality of individual and combined datasets. They can be divided into either standalone systems or database management system (DBMS) extensions. On the one hand, standalone systems do not interact well with DBMS and require time-consuming data imports and exports. On the other hand, DBMS extensions are often limited by the underlying system and do not cover the full set of data cleansing and integration tasks. We overcome both limitations by implementing a concise set of five data cleansing and integration operators on the parallel data analytics platform Stratosphere. We define the semantics of the operators, present their parallel implementation, and devise optimization techniques for individual operators and combinations thereof. Users specify declarative queries in our query language METEOR with our new operators to improve the data quality of individual datasets or integrate them to larger datasets. By integrating the data cleansing operators into the higher level language layer of Stratosphere, users can easily combine cleansing operators with operators from other domains, such as information extraction, to complex data flows. Through a generic description of the operators, the Stratosphere optimizer reorders operators even from different domains to find better query plans. As a case study, we reimplemented a part of the large Open Government Data integration project GovWILD with our new operators and show that our queries run significantly faster than the original GovWILD queries, which rely on relational operators. Evaluation reveals that our operators exhibit good scalability on up to 100 cores, so that even larger inputs can be efficiently processed by scaling out to more machines. Finally, our scripts are considerably shorter than the original GovWILD scripts, which results in better maintainability of the scripts.}, language = {en} } @article{GhoshCherstvyMetzler2014, author = {Ghosh, Surya K. and Cherstvy, Andrey G. and Metzler, Ralf}, title = {Non-universal tracer diffusion in crowded media of non-inert obstacles}, series = {Physical Chemistry Chemical Physics}, volume = {3}, journal = {Physical Chemistry Chemical Physics}, number = {17}, editor = {Metzler, Ralf}, publisher = {The Royal Society of Chemistry}, address = {Cambridge}, issn = {1463-9076}, pages = {1847 -- 1858}, year = {2014}, abstract = {We study the diffusion of a tracer particle, which moves in continuum space between a lattice of excluded volume, immobile non-inert obstacles. In particular, we analyse how the strength of the tracer-obstacle interactions and the volume occupancy of the crowders alter the diffusive motion of the tracer. From the details of partitioning of the tracer diffusion modes between trapping states when bound to obstacles and bulk diffusion, we examine the degree of localisation of the tracer in the lattice of crowders. We study the properties of the tracer diffusion in terms of the ensemble and time averaged mean squared displacements, the trapping time distributions, the amplitude variation of the time averaged mean squared displacements, and the non-Gaussianity parameter of the diffusing tracer. We conclude that tracer-obstacle adsorption and binding triggers a transient anomalous diffusion. From a very narrow spread of recorded individual time averaged trajectories we exclude continuous type random walk processes as the underlying physical model of the tracer diffusion in our system. For moderate tracer-crowder attraction the motion is found to be fully ergodic, while at stronger attraction strength a transient disparity between ensemble and time averaged mean squared displacements occurs. We also put our results into perspective with findings from experimental single-particle tracking and simulations of the diffusion of tagged tracers in dense crowded suspensions. Our results have implications for the diffusion, transport, and spreading of chemical components in highly crowded environments inside living cells and other structured liquids.}, language = {en} } @misc{GhoshCherstvyMetzler2014, author = {Ghosh, Surya K. and Cherstvy, Andrey G. and Metzler, Ralf}, title = {Non-universal tracer diffusion in crowded media of non-inert obstacles}, publisher = {The Royal Society of Chemistry}, address = {Cambridge}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-77128}, pages = {1847 -- 1858}, year = {2014}, abstract = {We study the diffusion of a tracer particle, which moves in continuum space between a lattice of excluded volume, immobile non-inert obstacles. In particular, we analyse how the strength of the tracer-obstacle interactions and the volume occupancy of the crowders alter the diffusive motion of the tracer. From the details of partitioning of the tracer diffusion modes between trapping states when bound to obstacles and bulk diffusion, we examine the degree of localisation of the tracer in the lattice of crowders. We study the properties of the tracer diffusion in terms of the ensemble and time averaged mean squared displacements, the trapping time distributions, the amplitude variation of the time averaged mean squared displacements, and the non-Gaussianity parameter of the diffusing tracer. We conclude that tracer-obstacle adsorption and binding triggers a transient anomalous diffusion. From a very narrow spread of recorded individual time averaged trajectories we exclude continuous type random walk processes as the underlying physical model of the tracer diffusion in our system. For moderate tracer-crowder attraction the motion is found to be fully ergodic, while at stronger attraction strength a transient disparity between ensemble and time averaged mean squared displacements occurs. We also put our results into perspective with findings from experimental single-particle tracking and simulations of the diffusion of tagged tracers in dense crowded suspensions. Our results have implications for the diffusion, transport, and spreading of chemical components in highly crowded environments inside living cells and other structured liquids.}, language = {en} } @phdthesis{Omranian2014, author = {Omranian, Nooshin}, title = {Inferring gene regulatory networks and cellular phases from time-resolved transcriptomics data}, pages = {vii, 96}, year = {2014}, language = {en} } @phdthesis{Omidbakhshfard2014, author = {Omidbakhshfard, Mohammad Amin}, title = {Functional analysis of the role of GRF9 in leaf development and establishment of Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE) in Arabidopsis thaliana}, pages = {XI, 162}, year = {2014}, language = {en} } @phdthesis{Pussak2014, author = {Pussak, Marcin}, title = {Seismic characterization of geothermal reservoirs by application of the common-reflection-surface stack method and attribute analysis}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-77565}, school = {Universit{\"a}t Potsdam}, pages = {viii, 140}, year = {2014}, abstract = {An important contribution of geosciences to the renewable energy production portfolio is the exploration and utilization of geothermal resources. For the development of a geothermal project at great depths a detailed geological and geophysical exploration program is required in the first phase. With the help of active seismic methods high-resolution images of the geothermal reservoir can be delivered. This allows potential transport routes for fluids to be identified as well as regions with high potential of heat extraction to be mapped, which indicates favorable conditions for geothermal exploitation. The presented work investigates the extent to which an improved characterization of geothermal reservoirs can be achieved with the new methods of seismic data processing. The summations of traces (stacking) is a crucial step in the processing of seismic reflection data. The common-reflection-surface (CRS) stacking method can be applied as an alternative for the conventional normal moveout (NMO) or the dip moveout (DMO) stack. The advantages of the CRS stack beside an automatic determination of stacking operator parameters include an adequate imaging of arbitrarily curved geological boundaries, and a significant increase in signal-to-noise (S/N) ratio by stacking far more traces than used in a conventional stack. A major innovation I have shown in this work is that the quality of signal attributes that characterize the seismic images can be significantly improved by this modified type of stacking in particular. Imporoved attribute analysis facilitates the interpretation of seismic images and plays a significant role in the characterization of reservoirs. Variations of lithological and petro-physical properties are reflected by fluctuations of specific signal attributes (eg. frequency or amplitude characteristics). Its further interpretation can provide quality assessment of the geothermal reservoir with respect to the capacity of fluids within a hydrological system that can be extracted and utilized. The proposed methodological approach is demonstrated on the basis on two case studies. In the first example, I analyzed a series of 2D seismic profile sections through the Alberta sedimentary basin on the eastern edge of the Canadian Rocky Mountains. In the second application, a 3D seismic volume is characterized in the surroundings of a geothermal borehole, located in the central part of the Polish basin. Both sites were investigated with the modified and improved stacking attribute analyses. The results provide recommendations for the planning of future geothermal plants in both study areas.}, language = {en} } @phdthesis{Conrad2014, author = {Conrad, Claudia}, title = {Open cluster groups and complexes}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-77605}, school = {Universit{\"a}t Potsdam}, pages = {xii, 172}, year = {2014}, abstract = {It is generally agreed upon that stars typically form in open clusters and stellar associations, but little is known about the structure of the open cluster system. Do open clusters and stellar associations form isolated or do they prefer to form in groups and complexes? Open cluster groups and complexes could verify star forming regions to be larger than expected, which would explain the chemical homogeneity over large areas in the Galactic disk. They would also define an additional level in the hierarchy of star formation and could be used as tracers for the scales of fragmentation in giant molecular clouds? Furthermore, open cluster groups and complexes could affect Galactic dynamics and should be considered in investigations and simulations on the dynamical processes, such as radial migration, disc heating, differential rotation, kinematic resonances, and spiral structure. In the past decade there were a few studies on open cluster pairs (de La Fuente Marcos \& de La Fuente Marcos 2009a,b,c) and on open cluster groups and complexes (Piskunov et al. 2006). The former only considered spatial proximity for the identification of the pairs, while the latter also required tangential velocities to be similar for the members. In this work I used the full set of 6D phase-space information to draw a more detailed picture on these structures. For this purpose I utilised the most homogeneous cluster catalogue available, namely the Catalogue of Open Cluster Data (COCD; Kharchenko et al. 2005a,b), which contains parameters for 650 open clusters and compact associations, as well as for their uniformly selected members. Additional radial velocity (RV) and metallicity ([M/H]) information on the members were obtained from the RAdial Velocity Experiment (RAVE; Steinmetz et al. 2006; Kordopatis et al. 2013) for 110 and 81 clusters, respectively. The RAVE sample was cleaned considering quality parameters and flags provided by RAVE (Matijevič et al. 2012; Kordopatis et al. 2013). To ensure that only real members were included for the mean values, also the cluster membership, as provided by Kharchenko et al. (2005a,b), was considered for the stars cross-matched in RAVE. 6D phase-space information could be derived for 432 out of the 650 COCD objects and I used an adaption of the Friends-of-Friends algorithm, as used in cosmology, to identify potential groupings. The vast majority of the 19 identified groupings were pairs, but I also found four groups of 4-5 members and one complex with 15 members. For the verification of the identified structures, I compared the results to a randomly selected subsample of the catalogue for the Milky Way global survey of Star Clusters (MWSC; Kharchenko et al. 2013), which became available recently, and was used as reference sample. Furthermore, I implemented Monte-Carlo simulations with randomised samples created from two distinguished input distributions for the spatial and velocity parameters. On the one hand, assuming a uniform distribution in the Galactic disc and, on the other hand, assuming the COCD data distributions to be representative for the whole open cluster population. The results suggested that the majority of identified pairs are rather by chance alignments, but the groups and the complex seemed to be genuine. A comparison of my results to the pairs, groups and complexes proposed in the literature yielded a partial overlap, which was most likely because of selection effects and different parameters considered. This is another verification for the existence of such structures. The characteristics of the found groupings favour that members of an open cluster grouping originate from a common giant molecular cloud and formed in a single, but possibly sequential, star formation event. Moreover, the fact that the young open cluster population showed smaller spatial separations between nearest neighbours than the old cluster population indicated that the lifetime of open cluster groupings is most likely comparable to that of the Galactic open cluster population itself. Still even among the old open clusters I could identify groupings, which suggested that the detected structure could be in some cases more long lived as one might think. In this thesis I could only present a pilot study on structures in the Galactic open cluster population, since the data sample used was highly incomplete. For further investigations a far more complete sample would be required. One step in this direction would be to use data from large current surveys, like SDSS, RAVE, Gaia-ESO and VVV, as well as including results from studies on individual clusters. Later the sample can be completed by data from upcoming missions, like Gaia and 4MOST. Future studies using this more complete open cluster sample will reveal the effect of open cluster groupings on star formation theory and their significance for the kinematics, dynamics and evolution of the Milky Way, and thereby of spiral galaxies.}, language = {en} } @phdthesis{Jueppner2014, author = {J{\"u}ppner, Jessica}, title = {Characterization of metabolomic dynamics in synchronized Chlamydomonas reinhardtii cell cultures and the impact of TOR inhibition on cell cycle, proliferation and growth}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-76923}, school = {Universit{\"a}t Potsdam}, pages = {VI, 153}, year = {2014}, abstract = {The adaptation of cell growth and proliferation to environmental changes is essential for the surviving of biological systems. The evolutionary conserved Ser/Thr protein kinase "Target of Rapamycin" (TOR) has emerged as a major signaling node that integrates the sensing of numerous growth signals to the coordinated regulation of cellular metabolism and growth. Although the TOR signaling pathway has been widely studied in heterotrophic organisms, the research on TOR in photosynthetic eukaryotes has been hampered by the reported land plant resistance to rapamycin. Thus, the finding that Chlamydomonas reinhardtii is sensitive to rapamycin, establish this unicellular green alga as a useful model system to investigate TOR signaling in photosynthetic eukaryotes. The observation that rapamycin does not fully arrest Chlamydomonas growth, which is different from observations made in other organisms, prompted us to investigate the regulatory function of TOR in Chlamydomonas in context of the cell cycle. Therefore, a growth system that allowed synchronously growth under widely unperturbed cultivation in a fermenter system was set up and the synchronized cells were characterized in detail. In a highly resolved kinetic study, the synchronized cells were analyzed for their changes in cytological parameters as cell number and size distribution and their starch content. Furthermore, we applied mass spectrometric analysis for profiling of primary and lipid metabolism. This system was then used to analyze the response dynamics of the Chlamydomonas metabolome and lipidome to TOR-inhibition by rapamycin The results show that TOR inhibition reduces cell growth, delays cell division and daughter cell release and results in a 50\% reduced cell number at the end of the cell cycle. Consistent with the growth phenotype we observed strong changes in carbon and nitrogen partitioning in the direction of rapid conversion into carbon and nitrogen storage through an accumulation of starch, triacylglycerol and arginine. Interestingly, it seems that the conversion of carbon into triacylglycerol occurred faster than into starch after TOR inhibition, which may indicate a more dominant role of TOR in the regulation of TAG biosynthesis than in the regulation of starch. This study clearly shows, for the first time, a complex picture of metabolic and lipidomic dynamically changes during the cell cycle of Chlamydomonas reinhardtii and furthermore reveals a complex regulation and adjustment of metabolite pools and lipid composition in response to TOR inhibition.}, language = {en} } @article{ShinCherstvyMetzler2014, author = {Shin, Jaeoh and Cherstvy, Andrey G. and Metzler, Ralf}, title = {Kinetics of polymer looping with macromolecular crowding: effects of volume fraction and crowder size}, series = {Soft Matter}, journal = {Soft Matter}, editor = {Metzler, Ralf}, publisher = {The Royal Society of Chemistry}, address = {Cambridge}, issn = {1744-683X}, pages = {472 -- 488}, year = {2014}, abstract = {The looping of polymers such as DNA is a fundamental process in the molecular biology of living cells, whose interior is characterised by a high degree of molecular crowding. We here investigate in detail the looping dynamics of flexible polymer chains in the presence of different degrees of crowding. From the analysis of the looping-unlooping rates and the looping probabilities of the chain ends we show that the presence of small crowders typically slows down the chain dynamics but larger crowders may in fact facilitate the looping. We rationalise these non-trivial and often counterintuitive effects of the crowder size on the looping kinetics in terms of an effective solution viscosity and standard excluded volume. It is shown that for small crowders the effect of an increased viscosity dominates, while for big crowders we argue that confinement effects (caging) prevail. The tradeoff between both trends can thus result in the impediment or facilitation of polymer looping, depending on the crowder size. We also examine how the crowding volume fraction, chain length, and the attraction strength of the contact groups of the polymer chain affect the looping kinetics and hairpin formation dynamics. Our results are relevant for DNA looping in the absence and presence of protein mediation, DNA hairpin formation, RNA folding, and the folding of polypeptide chains under biologically relevant high-crowding conditions.}, language = {en} } @misc{ShinCherstvyMetzler2014, author = {Shin, Jaeoh and Cherstvy, Andrey G. and Metzler, Ralf}, title = {Kinetics of polymer looping with macromolecular crowding: effects of volume fraction and crowder size}, publisher = {The Royal Society of Chemistry}, address = {Cambridge}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-76961}, pages = {472 -- 488}, year = {2014}, abstract = {The looping of polymers such as DNA is a fundamental process in the molecular biology of living cells, whose interior is characterised by a high degree of molecular crowding. We here investigate in detail the looping dynamics of flexible polymer chains in the presence of different degrees of crowding. From the analysis of the looping-unlooping rates and the looping probabilities of the chain ends we show that the presence of small crowders typically slows down the chain dynamics but larger crowders may in fact facilitate the looping. We rationalise these non-trivial and often counterintuitive effects of the crowder size on the looping kinetics in terms of an effective solution viscosity and standard excluded volume. It is shown that for small crowders the effect of an increased viscosity dominates, while for big crowders we argue that confinement effects (caging) prevail. The tradeoff between both trends can thus result in the impediment or facilitation of polymer looping, depending on the crowder size. We also examine how the crowding volume fraction, chain length, and the attraction strength of the contact groups of the polymer chain affect the looping kinetics and hairpin formation dynamics. Our results are relevant for DNA looping in the absence and presence of protein mediation, DNA hairpin formation, RNA folding, and the folding of polypeptide chains under biologically relevant high-crowding conditions.}, language = {en} } @phdthesis{Scheinemann2014, author = {Scheinemann, Hendrik Alexander}, title = {Hygienisierung von Rinderg{\"u}lle und Kl{\"a}rschl{\"a}mmen mittels milchsaurer Fermentation}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-77949}, school = {Universit{\"a}t Potsdam}, pages = {xviii, 172}, year = {2014}, abstract = {Tierische und menschliche F{\"a}kalien aus Landwirtschaft und Haushalten enthalten zahlreiche obligat und opportunistisch pathogene Mikroorganismen, deren Konzentration u. a. je nach Gesundheitszustand der betrachteten Gruppe schwankt. Neben den Krankheitserregern enthalten F{\"a}kalien aber auch essentielle Pflanzenn{\"a}hrstoffe (276) und dienen seit Jahrtausenden (63) als D{\"u}nger f{\"u}r Feldfr{\"u}chte. Mit der unbedarften Verwendung von pathogenbelastetem F{\"a}kald{\"u}nger steigt jedoch auch das Risiko einer Infektion von Mensch und Tier. Diese Gefahr erh{\"o}ht sich mit der globalen Vernetzung der Landwirtschaft, z. B. durch den Import von kontaminierten Futter- bzw. Lebensmitteln (29). Die vorliegende Arbeit stellt die milchsaure Fermentation von Rinderg{\"u}lle und Kl{\"a}rschlamm als alternative Hygienisierungsmethode gegen{\"u}ber der Pasteurisation in Biogasanlagen bzw. gebr{\"a}uchlichen Kompostierung vor. Dabei wird ein Abfall der Gram-negativen Bakterienflora sowie der Enterokokken, Schimmel- und Hefepilze unter die Nachweisgrenze von 3 log10KbE/g beobachtet, gleichzeitig steigt die Konzentration der Lactobacillaceae um das Tausendfache. Dar{\"u}ber hinaus wird gezeigt, dass pathogene Bakterien wie Staphylococcus aureus, Salmonella spp., Listeria monocytogenes, EHEC O:157 und vegetative Clostridum perfringens-Zellen innerhalb von 3 Tagen inaktiviert werden. Die Inaktivierung von ECBO-Viren und Spulwurmeiern erfolgt innerhalb von 7 bzw. 56 Tagen. Zur Aufkl{\"a}rung der Ursache der beobachteten Hygienisierung wurde das fermentierte Material auf fl{\"u}chtige Fetts{\"a}uren sowie pH-Wert{\"a}nderungen untersucht. Es konnte festgestellt werden, dass die gemessenen Werte nicht die alleinige Ursache f{\"u}r das Absterben der Erreger sind, vielmehr wird eine zus{\"a}tzliche bakterizide Wirkung durch eine mutmaßliche Bildung von Bakteriozinen in Betracht gezogen. Die parasitizide Wirkung wird auf die physikalischen Bedingungen der Fermentation zur{\"u}ckgef{\"u}hrt. Die methodischen Grundlagen basieren auf Analysen mittels zahlreicher klassisch-kultureller Verfahren, wie z. B. der Lebendkeimzahlbestimmung. Dar{\"u}ber hinaus findet die MALDI-TOF-Massenspektrometrie und die klassische PCR in Kombination mit der Gradienten-Gelelektrophorese Anwendung, um kultivierbare Bakterienfloren zu beschreiben bzw. nicht kultivierbare Bakterienfloren stichprobenartig zu erfassen. Neben den Aspekten der Hygienisierung wird zudem die Eignung der Methode f{\"u}r die landwirtschaftliche Nutzung ber{\"u}cksichtigt. Dies findet sich insbesondere in der Komposition des zu fermentierenden Materials wieder, welches f{\"u}r die verst{\"a}rkte Humusakkumulation im Ackerboden optimiert wurde. Dar{\"u}ber hinaus wird die Masseverlustbilanz w{\"a}hrend der milchsauren Fermentation mit denen der Kompostierung sowie der Verarbeitung in der Biogasanlage verglichen und als positiv bewertet, da sie mit insgesamt 2,45 \% sehr deutlich unter den bisherigen Alternativen liegt (73, 138, 458). Weniger Verluste an organischem Material w{\"a}hrend der Hygienisierung f{\"u}hren zu einer gr{\"o}ßeren verwendbaren D{\"u}ngermenge, die auf Grund ihres organischen Ursprungs zu einer Verst{\"a}rkung des Humusanteiles im Ackerboden beitragen kann (56, 132).}, language = {de} } @phdthesis{Lincke2014, author = {Lincke, Jens}, title = {Evolving Tools in a Collaborative Self-supporting Development Environment}, school = {Universit{\"a}t Potsdam}, pages = {164}, year = {2014}, language = {en} } @misc{Voland2014, type = {Master Thesis}, author = {Voland, Patrick}, title = {Webbasierte Visualisierung von Extended Floating Car Data (XFCD)}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-96751}, school = {Universit{\"a}t Potsdam}, pages = {VIII, 176}, year = {2014}, abstract = {Moderne Kraftfahrzeuge verf{\"u}gen {\"u}ber eine Vielzahl an Sensoren, welche f{\"u}r einen reibungslosen technischen Betrieb ben{\"o}tigt werden. Hierzu z{\"a}hlen neben fahrzeugspezifischen Sensoren (wie z.B. Motordrehzahl und Fahrzeuggeschwindigkeit) auch umweltspezifische Sensoren (wie z.B. Luftdruck und Umgebungstemperatur). Durch die zunehmende technische Vernetzung wird es m{\"o}glich, diese Daten der Kraftfahrzeugelektronik aus dem Fahrzeug heraus f{\"u}r die verschiedensten Zwecke zu verwenden. Die vorliegende Arbeit soll einen Beitrag dazu leisten, diese neue Art an massenhaften Daten im Sinne des Konzepts der „Extended Floating Car Data" (XFCD) als Geoinformationen nutzbar zu machen und diese f{\"u}r raumzeitliche Visualisierungen (zur visuellen Analyse) anwenden zu k{\"o}nnen. In diesem Zusammenhang wird speziell die Perspektive des Umwelt- und Verkehrsmonitoring betrachtet, wobei die Anforderungen und Potentiale mit Hilfe von Experteninterviews untersucht werden. Es stellt sich die Frage, welche Daten durch die Kraftfahrzeugelektronik geliefert und wie diese m{\"o}glichst automatisiert erfasst, verarbeitet, visualisiert und {\"o}ffentlich bereitgestellt werden k{\"o}nnen. Neben theoretischen und technischen Grundlagen zur Datenerfassung und -nutzung liegt der Fokus auf den Methoden der kartographischen Visualisierung. Dabei soll der Frage nachgegangenen werden, ob eine technische Implementierung ausschließlich unter Verwendung von Open Source Software m{\"o}glich ist. Das Ziel der Arbeit bildet ein zweigliedriger Ansatz, welcher zum einen die Visualisierung f{\"u}r ein exemplarisch gew{\"a}hltes Anwendungsszenario und zum anderen die prototypische Implementierung von der Datenerfassung im Fahrzeug unter Verwendung der gesetzlich vorgeschriebenen „On Board Diagnose"-Schnittstelle und einem Smartphone-gest{\"u}tzten Ablauf bis zur webbasierten Visualisierung umfasst.}, language = {de} } @incollection{Bienert2014, author = {Bienert, Michael C.}, title = {Reformpolitik und Dienst an der Gemeinde}, series = {Otto Braun : ein preußischer Demokrat}, booktitle = {Otto Braun : ein preußischer Demokrat}, publisher = {Be.bra-Verl.}, address = {Berlin}, isbn = {978-3-89809-116-9}, publisher = {Universit{\"a}t Potsdam}, pages = {59 -- 83}, year = {2014}, language = {de} } @incollection{Ciesla2014, author = {Ciesla, Burghard}, title = {Bei meiner Liebe zum Walde und zur Jagd ...}, series = {Otto Braun : ein preußischer Demokrat}, booktitle = {Otto Braun : ein preußischer Demokrat}, publisher = {Be.bra-Verl.}, address = {Berlin}, isbn = {978-3-89809-116-9}, publisher = {Universit{\"a}t Potsdam}, pages = {85 -- 101}, year = {2014}, language = {de} } @phdthesis{Klaper2014, author = {Klaper, Matthias}, title = {Untersuchungen zum intramolekularen Transfer von Singulettsauerstoff auf Acene und Alkene}, school = {Universit{\"a}t Potsdam}, pages = {118}, year = {2014}, language = {de} } @unpublished{FedchenkoTarkhanov2014, author = {Fedchenko, Dmitry and Tarkhanov, Nikolai Nikolaevich}, title = {An index formula for Toeplitz operators}, volume = {3}, number = {12}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {2193-6943}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72499}, pages = {24}, year = {2014}, abstract = {We prove a Fedosov index formula for the index of Toeplitz operators connected with the Hardy space of solutions to an elliptic system of first order partial differential equations in a bounded domain of Euclidean space with infinitely differentiable boundary.}, language = {en} } @phdthesis{Balzer2014, author = {Balzer, Arnim}, title = {Crab flare observations with H.E.S.S. phase II}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72545}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {The H.E.S.S. array is a third generation Imaging Atmospheric Cherenkov Telescope (IACT) array. It is located in the Khomas Highland in Namibia, and measures very high energy (VHE) gamma-rays. In Phase I, the array started data taking in 2004 with its four identical 13 m telescopes. Since then, H.E.S.S. has emerged as the most successful IACT experiment to date. Among the almost 150 sources of VHE gamma-ray radiation found so far, even the oldest detection, the Crab Nebula, keeps surprising the scientific community with unexplained phenomena such as the recently discovered very energetic flares of high energy gamma-ray radiation. During its most recent flare, which was detected by the Fermi satellite in March 2013, the Crab Nebula was simultaneously observed with the H.E.S.S. array for six nights. The results of the observations will be discussed in detail during the course of this work. During the nights of the flare, the new 24 m × 32 m H.E.S.S. II telescope was still being commissioned, but participated in the data taking for one night. To be able to reconstruct and analyze the data of the H.E.S.S. Phase II array, the algorithms and software used by the H.E.S.S. Phase I array had to be adapted. The most prominent advanced shower reconstruction technique developed by de Naurois and Rolland, the template-based model analysis, compares real shower images taken by the Cherenkov telescope cameras with shower templates obtained using a semi-analytical model. To find the best fitting image, and, therefore, the relevant parameters that describe the air shower best, a pixel-wise log-likelihood fit is done. The adaptation of this advanced shower reconstruction technique to the heterogeneous H.E.S.S. Phase II array for stereo events (i.e. air showers seen by at least two telescopes of any kind), its performance using MonteCarlo simulations as well as its application to real data will be described.}, language = {en} } @phdthesis{Faivre2014, author = {Faivre, Damien}, title = {Biological and biomimetic formation and organization of magnetic nanoparticles}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72022}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Biological materials have ever been used by humans because of their remarkable properties. This is surprising since the materials are formed under physiological conditions and with commonplace constituents. Nature thus not only provides us with inspiration for designing new materials but also teaches us how to use soft molecules to tune interparticle and external forces to structure and assemble simple building blocks into functional entities. Magnetotactic bacteria and their chain of magnetosomes represent a striking example of such an accomplishment where a very simple living organism controls the properties of inorganics via organics at the nanometer-scale to form a single magnetic dipole that orients the cell in the Earth magnetic field lines. My group has developed a biological and a bio-inspired research based on these bacteria. My research, at the interface between chemistry, materials science, physics, and biology focuses on how biological systems synthesize, organize and use minerals. We apply the design principles to sustainably form hierarchical materials with controlled properties that can be used e.g. as magnetically directed nanodevices towards applications in sensing, actuating, and transport. In this thesis, I thus first present how magnetotactic bacteria intracellularly form magnetosomes and assemble them in chains. I developed an assay, where cells can be switched from magnetic to non-magnetic states. This enabled to study the dynamics of magnetosome and magnetosome chain formation. We found that the magnetosomes nucleate within minutes whereas chains assembles within hours. Magnetosome formation necessitates iron uptake as ferrous or ferric ions. The transport of the ions within the cell leads to the formation of a ferritin-like intermediate, which subsequently is transported and transformed within the magnetosome organelle in a ferrihydrite-like precursor. Finally, magnetite crystals nucleate and grow toward their mature dimension. In addition, I show that the magnetosome assembly displays hierarchically ordered nano- and microstructures over several levels, enabling the coordinated alignment and motility of entire populations of cells. The magnetosomes are indeed composed of structurally pure magnetite. The organelles are partly composed of proteins, which role is crucial for the properties of the magnetosomes. As an example, we showed how the protein MmsF is involved in the control of magnetosome size and morphology. We have further shown by 2D X-ray diffraction that the magnetosome particles are aligned along the same direction in the magnetosome chain. We then show how magnetic properties of the nascent magnetosome influence the alignment of the particles, and how the proteins MamJ and MamK coordinate this assembly. We propose a theoretical approach, which suggests that biological forces are more important than physical ones for the chain formation. All these studies thus show how magnetosome formation and organization are under strict biological control, which is associated with unprecedented material properties. Finally, we show that the magnetosome chain enables the cells to find their preferred oxygen conditions if the magnetic field is present. The synthetic part of this work shows how the understanding of the design principles of magnetosome formation enabled me to perform biomimetic synthesis of magnetite particles within the highly desired size range of 25 to 100 nm. Nucleation and growth of such particles are based on aggregation of iron colloids termed primary particles as imaged by cryo-high resolution TEM. I show how additives influence magnetite formation and properties. In particular, MamP, a so-called magnetochrome proteins involved in the magnetosome formation in vivo, enables the in vitro formation of magnetite nanoparticles exclusively from ferrous iron by controlling the redox state of the process. Negatively charged additives, such as MamJ, retard magnetite nucleation in vitro, probably by interacting with the iron ions. Other additives such as e.g. polyarginine can be used to control the colloidal stability of stable-single domain sized nanoparticles. Finally, I show how we can "glue" magnetic nanoparticles to form propellers that can be actuated and swim with the help of external magnetic fields. We propose a simple theory to explain the observed movement. We can use the theoretical framework to design experimental conditions to sort out the propellers depending on their size and effectively confirm this prediction experimentally. Thereby, we could image propellers with size down to 290 nm in their longer dimension, much smaller than what perform so far.}, language = {en} } @phdthesis{Steinert2014, author = {Steinert, Bastian}, title = {Built-in recovery support for explorative programming}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71305}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {This work introduces concepts and corresponding tool support to enable a complementary approach in dealing with recovery. Programmers need to recover a development state, or a part thereof, when previously made changes reveal undesired implications. However, when the need arises suddenly and unexpectedly, recovery often involves expensive and tedious work. To avoid tedious work, literature recommends keeping away from unexpected recovery demands by following a structured and disciplined approach, which consists of the application of various best practices including working only on one thing at a time, performing small steps, as well as making proper use of versioning and testing tools. However, the attempt to avoid unexpected recovery is both time-consuming and error-prone. On the one hand, it requires disproportionate effort to minimize the risk of unexpected situations. On the other hand, applying recommended practices selectively, which saves time, can hardly avoid recovery. In addition, the constant need for foresight and self-control has unfavorable implications. It is exhaustive and impedes creative problem solving. This work proposes to make recovery fast and easy and introduces corresponding support called CoExist. Such dedicated support turns situations of unanticipated recovery from tedious experiences into pleasant ones. It makes recovery fast and easy to accomplish, even if explicit commits are unavailable or tests have been ignored for some time. When mistakes and unexpected insights are no longer associated with tedious corrective actions, programmers are encouraged to change source code as a means to reason about it, as opposed to making changes only after structuring and evaluating them mentally. This work further reports on an implementation of the proposed tool support in the Squeak/Smalltalk development environment. The development of the tools has been accompanied by regular performance and usability tests. In addition, this work investigates whether the proposed tools affect programmers' performance. In a controlled lab study, 22 participants improved the design of two different applications. Using a repeated measurement setup, the study examined the effect of providing CoExist on programming performance. The result of analyzing 88 hours of programming suggests that built-in recovery support as provided with CoExist positively has a positive effect on programming performance in explorative programming tasks.}, language = {en} } @phdthesis{Ermeydan2014, author = {Ermeydan, Mahmut Ali}, title = {Wood cell wall modification with hydrophobic molecules}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71325}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Wood is used for many applications because of its excellent mechanical properties, relative abundance and as it is a renewable resource. However, its wider utilization as an engineering material is limited because it swells and shrinks upon moisture changes and is susceptible to degradation by microorganisms and/or insects. Chemical modifications of wood have been shown to improve dimensional stability, water repellence and/or durability, thus increasing potential service-life of wood materials. However current treatments are limited because it is difficult to introduce and fix such modifications deep inside the tissue and cell wall. Within the scope of this thesis, novel chemical modification methods of wood cell walls were developed to improve both dimensional stability and water repellence of wood material. These methods were partly inspired by the heartwood formation in living trees, a process, that for some species results in an insertion of hydrophobic chemical substances into the cell walls of already dead wood cells, In the first part of this thesis a chemistry to modify wood cell walls was used, which was inspired by the natural process of heartwood formation. Commercially available hydrophobic flavonoid molecules were effectively inserted in the cell walls of spruce, a softwood species with low natural durability, after a tosylation treatment to obtain "artificial heartwood". Flavonoid inserted cell walls show a reduced moisture absorption, resulting in better dimensional stability, water repellency and increased hardness. This approach was quite different compared to established modifications which mainly address hydroxyl groups of cell wall polymers with hydrophilic substances. In the second part of the work in-situ styrene polymerization inside the tosylated cell walls was studied. It is known that there is a weak adhesion between hydrophobic polymers and hydrophilic cell wall components. The hydrophobic styrene monomers were inserted into the tosylated wood cell walls for further polymerization to form polystyrene in the cell walls, which increased the dimensional stability of the bulk wood material and reduced water uptake of the cell walls considerably when compared to controls. In the third part of the work, grafting of another hydrophobic and also biodegradable polymer, poly(ɛ-caprolactone) in the wood cell walls by ring opening polymerization of ɛ-caprolactone was studied at mild temperatures. Results indicated that polycaprolactone attached into the cell walls, caused permanent swelling of the cell walls up to 5\%. Dimensional stability of the bulk wood material increased 40\% and water absorption reduced more than 35\%. A fully biodegradable and hydrophobized wood material was obtained with this method which reduces disposal problem of the modified wood materials and has improved properties to extend the material's service-life. Starting from a bio-inspired approach which showed great promise as an alternative to standard cell wall modifications we showed the possibility of inserting hydrophobic molecules in the cell walls and supported this fact with in-situ styrene and ɛ-caprolactone polymerization into the cell walls. It was shown in this thesis that despite the extensive knowledge and long history of using wood as a material there is still room for novel chemical modifications which could have a high impact on improving wood properties.}, language = {en} } @phdthesis{Fischer2014, author = {Fischer, Jost Leonhardt}, title = {Nichtlineare Kopplungsmechanismen akustischer Oszillatoren am Beispiel der Synchronisation von Orgelpfeifen}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71975}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {In dieser Arbeit werden nichtlineare Kopplungsmechanismen von akustischen Oszillatoren untersucht, die zu Synchronisation f{\"u}hren k{\"o}nnen. Aufbauend auf die Fragestellungen vorangegangener Arbeiten werden mit Hilfe theoretischer und experimenteller Studien sowie mit Hilfe numerischer Simulationen die Elemente der Tonentstehung in der Orgelpfeife und die Mechanismen der gegenseitigen Wechselwirkung von Orgelpfeifen identifiziert. Daraus wird erstmalig ein vollst{\"a}ndig auf den aeroakustischen und fluiddynamischen Grundprinzipien basierendes nichtlinear gekoppeltes Modell selbst-erregter Oszillatoren f{\"u}r die Beschreibung des Verhaltens zweier wechselwirkender Orgelpfeifen entwickelt. Die durchgef{\"u}hrten Modellrechnungen werden mit den experimentellen Befunden verglichen. Es zeigt sich, dass die Tonentstehung und die Kopplungsmechanismen von Orgelpfeifen durch das entwickelte Oszillatormodell in weiten Teilen richtig beschrieben werden. Insbesondere kann damit die Ursache f{\"u}r den nichtlinearen Zusammenhang von Kopplungsst{\"a}rke und Synchronisation des gekoppelten Zwei-Pfeifen Systems, welcher sich in einem nichtlinearen Verlauf der Arnoldzunge darstellt, gekl{\"a}rt werden. Mit den gewonnenen Erkenntnissen wird der Einfluss des Raumes auf die Tonentstehung bei Orgelpfeifen betrachtet. Daf{\"u}r werden numerische Simulationen der Wechselwirkung einer Orgelpfeife mit verschiedenen Raumgeometrien, wie z. B. ebene, konvexe, konkave, und gezahnte Geometrien, exemplarisch untersucht. Auch der Einfluss von Schwellk{\"a}sten auf die Tonentstehung und die Klangbildung der Orgelpfeife wird studiert. In weiteren, neuartigen Synchronisationsexperimenten mit identisch gestimmten Orgelpfeifen, sowie mit Mixturen wird die Synchronisation f{\"u}r verschiedene, horizontale und vertikale Pfeifenabst{\"a}nde in der Ebene der Schallabstrahlung, untersucht. Die dabei erstmalig beobachteten r{\"a}umlich isotropen Unstetigkeiten im Schwingungsverhalten der gekoppelten Pfeifensysteme, deuten auf abstandsabh{\"a}ngige Wechsel zwischen gegen- und gleichphasigen Sychronisationsregimen hin. Abschließend wird die M{\"o}glichkeit dokumentiert, das Ph{\"a}nomen der Synchronisation zweier Orgelpfeifen durch numerische Simulationen, also der Behandlung der kompressiblen Navier-Stokes Gleichungen mit entsprechenden Rand- und Anfangsbedingungen, realit{\"a}tsnah abzubilden. Auch dies stellt ein Novum dar.}, language = {de} } @phdthesis{Dyachenko2014, author = {Dyachenko, Evgeniya}, title = {Elliptic problems with small parameter}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72056}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {In this thesis we consider diverse aspects of existence and correctness of asymptotic solutions to elliptic differential and pseudodifferential equations. We begin our studies with the case of a general elliptic boundary value problem in partial derivatives. A small parameter enters the coefficients of the main equation as well as into the boundary conditions. Such equations have already been investigated satisfactory, but there still exist certain theoretical deficiencies. Our aim is to present the general theory of elliptic problems with a small parameter. For this purpose we examine in detail the case of a bounded domain with a smooth boundary. First of all, we construct formal solutions as power series in the small parameter. Then we examine their asymptotic properties. It suffices to carry out sharp two-sided \emph{a priori} estimates for the operators of boundary value problems which are uniform in the small parameter. Such estimates failed to hold in functional spaces used in classical elliptic theory. To circumvent this limitation we exploit norms depending on the small parameter for the functions defined on a bounded domain. Similar norms are widely used in literature, but their properties have not been investigated extensively. Our theoretical investigation shows that the usual elliptic technique can be correctly carried out in these norms. The obtained results also allow one to extend the norms to compact manifolds with boundaries. We complete our investigation by formulating algebraic conditions on the operators and showing their equivalence to the existence of a priori estimates. In the second step, we extend the concept of ellipticity with a small parameter to more general classes of operators. Firstly, we want to compare the difference in asymptotic patterns between the obtained series and expansions for similar differential problems. Therefore we investigate the heat equation in a bounded domain with a small parameter near the time derivative. In this case the characteristics touch the boundary at a finite number of points. It is known that the solutions are not regular in a neighbourhood of such points in advance. We suppose moreover that the boundary at such points can be non-smooth but have cuspidal singularities. We find a formal asymptotic expansion and show that when a set of parameters comes through a threshold value, the expansions fail to be asymptotic. The last part of the work is devoted to general concept of ellipticity with a small parameter. Several theoretical extensions to pseudodifferential operators have already been suggested in previous studies. As a new contribution we involve the analysis on manifolds with edge singularities which allows us to consider wider classes of perturbed elliptic operators. We examine that introduced classes possess a priori estimates of elliptic type. As a further application we demonstrate how developed tools can be used to reduce singularly perturbed problems to regular ones.}, language = {en} } @phdthesis{Girbig2014, author = {Girbig, Dorothee}, title = {Analysing concerted criteria for local dynamic properties of metabolic systems}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72017}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Metabolic systems tend to exhibit steady states that can be measured in terms of their concentrations and fluxes. These measurements can be regarded as a phenotypic representation of all the complex interactions and regulatory mechanisms taking place in the underlying metabolic network. Such interactions determine the system's response to external perturbations and are responsible, for example, for its asymptotic stability or for oscillatory trajectories around the steady state. However, determining these perturbation responses in the absence of fully specified kinetic models remains an important challenge of computational systems biology. Structural kinetic modeling (SKM) is a framework to analyse whether a metabolic steady state remains stable under perturbation, without requiring detailed knowledge about individual rate equations. It provides a parameterised representation of the system's Jacobian matrix in which the model parameters encode information about the enzyme-metabolite interactions. Stability criteria can be derived by generating a large number of structural kinetic models (SK-models) with randomly sampled parameter sets and evaluating the resulting Jacobian matrices. The parameter space can be analysed statistically in order to detect network positions that contribute significantly to the perturbation response. Because the sampled parameters are equivalent to the elasticities used in metabolic control analysis (MCA), the results are easy to interpret biologically. In this project, the SKM framework was extended by several novel methodological improvements. These improvements were evaluated in a simulation study using a set of small example pathways with simple Michaelis Menten rate laws. Afterwards, a detailed analysis of the dynamic properties of the neuronal TCA cycle was performed in order to demonstrate how the new insights obtained in this work could be used for the study of complex metabolic systems. The first improvement was achieved by examining the biological feasibility of the elasticity combinations created during Monte Carlo sampling. Using a set of small example systems, the findings showed that the majority of sampled SK-models would yield negative kinetic parameters if they were translated back into kinetic models. To overcome this problem, a simple criterion was formulated that mitigates such infeasible models and the application of this criterion changed the conclusions of the SKM experiment. The second improvement of this work was the application of supervised machine-learning approaches in order to analyse SKM experiments. So far, SKM experiments have focused on the detection of individual enzymes to identify single reactions important for maintaining the stability or oscillatory trajectories. In this work, this approach was extended by demonstrating how SKM enables the detection of ensembles of enzymes or metabolites that act together in an orchestrated manner to coordinate the pathways response to perturbations. In doing so, stable and unstable states served as class labels, and classifiers were trained to detect elasticity regions associated with stability and instability. Classification was performed using decision trees and relevance vector machines (RVMs). The decision trees produced good classification accuracy in terms of model bias and generalizability. RVMs outperformed decision trees when applied to small models, but encountered severe problems when applied to larger systems because of their high runtime requirements. The decision tree rulesets were analysed statistically and individually in order to explore the role of individual enzymes or metabolites in controlling the system's trajectories around steady states. The third improvement of this work was the establishment of a relationship between the SKM framework and the related field of MCA. In particular, it was shown how the sampled elasticities could be converted to flux control coefficients, which were then investigated for their predictive information content in classifier training. After evaluation on the small example pathways, the methodology was used to study two steady states of the neuronal TCA cycle with respect to their intrinsic mechanisms responsible for stability or instability. The findings showed that several elasticities were jointly coordinated to control stability and that the main source for potential instabilities were mutations in the enzyme alpha-ketoglutarate dehydrogenase.}, language = {en} } @phdthesis{Schollaen2014, author = {Schollaen, Karina}, title = {Tracking climate signals in tropical trees}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71947}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {The tropical warm pool waters surrounding Indonesia are one of the equatorial heat and moisture sources that are considered as a driving force of the global climate system. The climate in Indonesia is dominated by the equatorial monsoon system, and has been linked to El Ni{\~n}o-Southern Oscillation (ENSO) events, which often result in severe droughts or floods over Indonesia with profound societal and economic impacts on the populations living in the world's fourth most populated country. The latest IPCC report states that ENSO will remain the dominant mode in the tropical Pacific with global effects in the 21st century and ENSO-related precipitation extremes will intensify. However, no common agreement exists among climate simulation models for projected change in ENSO and the Australian-Indonesian Monsoon. Exploring high-resolution palaeoclimate archives, like tree rings or varved lake sediments, provide insights into the natural climate variability of the past, and thus helps improving and validating simulations of future climate changes. Centennial tree-ring stable isotope records | Within this doctoral thesis the main goal was to explore the potential of tropical tree rings to record climate signals and to use them as palaeoclimate proxies. In detail, stable carbon (δ13C) and oxygen (δ18O) isotopes were extracted from teak trees in order to establish the first well-replicated centennial (AD 1900-2007) stable isotope records for Java, Indonesia. Furthermore, different climatic variables were tested whether they show significant correlation with tree-ring proxies (ring-width, δ13C, δ18O). Moreover, highly resolved intra-annual oxygen isotope data were established to assess the transfer of the seasonal precipitation signal into the tree rings. Finally, the established oxygen isotope record was used to reveal possible correlations with ENSO events. Methodological achievements | A second goal of this thesis was to assess the applicability of novel techniques which facilitate and optimize high-resolution and high-throughput stable isotope analysis of tree rings. Two different UV-laser-based microscopic dissection systems were evaluated as a novel sampling tool for high-resolution stable isotope analysis. Furthermore, an improved procedure of tree-ring dissection from thin cellulose laths for stable isotope analysis was designed. The most important findings of this thesis are: I) The herein presented novel sampling techniques improve stable isotope analyses for tree-ring studies in terms of precision, efficiency and quality. The UV-laser-based microdissection serve as a valuable tool for sampling plant tissue at ultrahigh-resolution and for unprecedented precision. II) A guideline for a modified method of cellulose extraction from wholewood cross-sections and subsequent tree-ring dissection was established. The novel technique optimizes the stable isotope analysis process in two ways: faster and high-throughput cellulose extraction and precise tree-ring separation at annual to high-resolution scale. III) The centennial tree-ring stable isotope records reveal significant correlation with regional precipitation. High-resolution stable oxygen values, furthermore, allow distinguishing between dry and rainy season rainfall. IV) The δ18O record reveals significant correlation with different ENSO flavors and demonstrates the importance of considering ENSO flavors when interpreting palaeoclimatic data in the tropics. The findings of my dissertation show that seasonally resolved δ18O records from Indonesian teak trees are a valuable proxy for multi-centennial reconstructions of regional precipitation variability (monsoon signals) and large-scale ocean-atmosphere phenomena (ENSO) for the Indo-Pacific region. Furthermore, the novel methodological achievements offer many unexplored avenues for multidisciplinary research in high-resolution palaeoclimatology.}, language = {en} } @book{OPUS4-6950, title = {K{\"u}che und Kultur in der Slavia : eigenes und Fremdes im ausgehenden 20. Jahrhundert}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, organization = {Franz, Norbert (Hrsg.) , Frieß, Nina (Hrsg.)}, isbn = {978-3-86956-299-5}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71290}, publisher = {Universit{\"a}t Potsdam}, pages = {305}, year = {2014}, abstract = {Der vorliegende Band vereint thematisch auf das Essen bezogene Beitr{\"a}ge aus der slavistischen Literatur- und Kulturwissenschaft. Er zeigt das seit einigen Jahren artikulierte Interesse an dem Thema ohne dieses gleich zu einem „culinary turn" stilisieren zu wollen. Das Essen ist - analysiert man die Pr{\"a}senz des Themas in Literatur, Film und anderen Medien der Hochkultur - ein Bereich, in und mit dem allgemeinere kulturelle und soziale Prozesse besonders anschaulich gezeigt werden k{\"o}nnen.}, language = {de} } @phdthesis{Biegholdt2014, author = {Biegholdt, Georg}, title = {Theorie und Praxis der Lerngruppensprache im Musikunterricht}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-69657}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Der Umgang mit der musikalischen Fachsprache wird in den meisten Lehrpl{\"a}nen f{\"u}r den Musikunterricht der Sekundarstufe I gefordert. Allerdings fehlt nicht nur in den Lehrpl{\"a}nen, sondern auch in der musikdidaktischen Literatur eine inhaltliche Ausgestaltung dieser Forderung. {\"U}ber Inhalt, Umfang und Ziel der in der Schule anzuwendenden musikalischen Fachsprache herrscht daher keine Klarheit. Empirische Untersuchungen zu den sprachlichen Inhalten im Musikunterricht liegen ebenfalls nicht vor. Auch in vielen anderen Unterrichtsf{\"a}chern ist die Forschungslage die sprachlichen Inhalte betreffend {\"u}berschaubar. Mit der Verwendung von Sprache sind jedoch nicht nur Kommunikationsprozesse verbunden, sondern gleichzeitig Lernprozesse innerhalb der Sprache, von der Wortschatzerweiterung bis zur Herstellung von inhaltlich-thematischen Zusammenh{\"a}ngen. Diese Lernprozesse werden beeinflusst von der Wortwahl der Lernenden und Lehrenden. Die Wortwahl der Lernenden l{\"a}sst gleichzeitig einen Schluss zu auf den Stand des Wissens und dessen Vernetzung. Auf dieser Basis ist der sprachliche Inhalt des Musikunterrichtes der Gegenstand der vorgelegten Arbeit. Ziel der Studie war herauszu¬finden, inwieweit es gelingen kann, durch die Art und Weise des Einsatzes und den Umfang von Fachsprache im Musikunterricht Lernprozesse effektiver und erfolgreicher zu gestalten und besser an Gegenwarts- und Zukunftsbed{\"u}rfnissen der Lernenden auszurichten.}, language = {de} } @phdthesis{Wilde2014, author = {Wilde, Anja}, title = {Auspr{\"a}gungen r{\"a}umlicher Identit{\"a}t in ehemaligen sudetendeutschen Gebieten der Tschechischen Republik}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-311-4}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-70247}, school = {Universit{\"a}t Potsdam}, pages = {XVI, 395}, year = {2014}, abstract = {Das tschechische Grenzgebiet ist eine der Regionen in Europa, die in der Folge des Zweiten Weltkrieges am gravierendsten von Umbr{\"u}chen in der zuvor bestehenden Bev{\"o}lkerungsstruktur betroffen waren. Der erzwungenen Aussiedlung eines Großteils der ans{\"a}ssigen Bev{\"o}lkerung folgten die Neubesiedlung durch verschiedenste Zuwanderergruppen sowie teilweise langanhaltende Fluktuationen der Einwohnerschaft. Die Stabilisierung der Bev{\"o}lkerung stand sodann unter dem Zeichen der sozialistischen Gesellschafts- und Wirtschaftsordnung, die die Lebensweise und Raumwahrnehmung der neuen Einwohner nachhaltig pr{\"a}gte. Die Grenz{\"o}ffnung von 1989, die politische Transformation sowie die Integration der Tschechischen Republik in die Europ{\"a}ische Union brachten neue demographische und sozio{\"o}konomische Entwicklungen mit sich. Sie schufen aber auch die Bedingungen daf{\"u}r, sich neu und offen auch mit der spezifischen Geschichte des ehemaligen Sudetenlandes sowie mit dem Zustand der gegenw{\"a}rtigen Gesellschaft in diesem Gebiet auseinanderzusetzen. Im Rahmen der vorliegenden Arbeit wird anhand zweier Beispielregionen untersucht, welche Raumvorstellungen und Raumbindungen bei der heute in den ehemaligen sudetendeutschen Gebieten ans{\"a}ssigen Bev{\"o}lkerung vorhanden sind und welche Einfl{\"u}sse die unterschiedlichen raumstrukturellen Bedingungen darauf aus{\"u}ben. Besonderes Augenmerk wird auf die soziale Komponente der Auspr{\"a}gung r{\"a}umlicher Identit{\"a}t gelegt, das heißt auf die Rolle von Bedeutungszuweisungen gegen{\"u}ber Raumelementen im Rahmen sozialer Kommunikation und Interaktion. Dies erscheint von besonderer Relevanz in einem Raum, der sich durch eine gewisse Heterogenit{\"a}t seiner Einwohnerschaft hinsichtlich ihres ethnischen, kulturellen beziehungsweise biographischen Hintergrundes auszeichnet. Schließlich wird ermittelt, welche Impulse unter Umst{\"a}nden von einer ausgepr{\"a}gten r{\"a}umlichen Identit{\"a}t f{\"u}r die Entwicklung des Raumes ausgehen.}, language = {de} } @phdthesis{Berdzinski2014, author = {Berdzinski, Stefan}, title = {Photoinduzierte radikalische Polymerisation in ionischen Fl{\"u}ssigkeiten und der Einfluss der Radikalrekombination}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72582}, school = {Universit{\"a}t Potsdam}, pages = {VIII, 114}, year = {2014}, abstract = {Die vorliegende Arbeit behandelt Untersuchungen zum Einfluss ionischer Fl{\"u}ssigkeiten sowohl auf den Rekombinationsprozess photolytisch generierter Lophylradikale als auch auf die photoinduzierte Polymerisation. Im Fokus standen hierbei pyrrolidiniumbasierte ionische Fl{\"u}ssigkeiten sowie polymerisierbare imidazoliumbasierte ionische Fl{\"u}ssigkeiten. Mittels UV-Vis-Spektroskopie wurde in den ionischen Fl{\"u}ssigkeiten im Vergleich zu ausgew{\"a}hlten organischen L{\"o}sungsmitteln die Rekombinationskinetik der aus o-Cl-HABI photolytisch generierten Lophylradikale bei unterschiedlichen Temperaturen verfolgt und die Geschwindigkeitskonstanten der Radikalrekombination bestimmt. Die Charakterisierung des Rekombinationsprozesses erfolgt dabei insbesondere unter Verwendung der mittels Eyring-Gleichung ermittelten Aktivierungsparameter. Hierbei konnte gezeigt werden, dass die Rekombination der Lophylradikale in den ionischen Fl{\"u}ssigkeiten im Gegensatz zu den organischen L{\"o}sungsmitteln zu einem großen Anteil innerhalb des L{\"o}sungsmittelk{\"a}figs erfolgt. Weiterhin wurden f{\"u}r den Einsatz von o-Cl-HABI als Radikalbildner in den photoinduzierten Polymerisationen mehrere m{\"o}gliche Co-Initiatoren {\"u}ber photokalorimetrische Messungen untersucht. Hierbei wurde auch ein neuer Aspekt zur Ketten{\"u}bertragung vom Lophylradikal auf den heterocyclischen Co-Initiator vorgestellt. Dar{\"u}ber hinaus wurden photoinduzierte Polymerisationen unter Einsatz eines Initiatorsystems, bestehend aus o-Cl-HABI als Radikalbildner und einem heterocyclischen Co-Initiator, in den ionischen Fl{\"u}ssigkeiten untersucht. Diese Untersuchungen beinhalten zum einen photokalorimetrische Messungen der photoinduzierten Polymerisation von polymerisierbaren imidazoliumbasierten ionischen Fl{\"u}ssigkeiten. Zum anderen wurden Untersuchungen zur photoinduzierten Polymerisation von Methylmethacrylat in pyrrolidiniumbasierten ionischen Fl{\"u}ssigkeiten durchgef{\"u}hrt. Dabei wurden Einflussparameter wie Zeit, Temperatur, Viskosit{\"a}t, L{\"o}sungsmittelk{\"a}figeffekt und die Alkylkettenl{\"a}nge am Kation der ionischen Fl{\"u}ssigkeiten auf die Ausbeuten und Molmassen sowie Molmassenverteilungen der Polymere hin untersucht.}, language = {de} } @book{BadoBellingHeroldetal.2014, author = {Bad{\´o}, Attila and Belling, Detlev W. and Herold, Antje and Kneis, Marek and Cheesman, Samantha Joy and Farkas Csamang{\´o}, Erika and Ember, Alex and Hegyes, P{\´e}ter Istv{\´a}n and Nagy, Csongor Istv{\´a}n and Homoki-Nagy, M{\´a}ria and Nagy, Zsolt and Papp, Tekla and Schiffner, Imola and Varga, Norbert}, title = {Rechtsentwicklungen aus europ{\"a}ischer Perspektive im 21. Jahrhundert}, editor = {Bad{\´o}, Attila and Belling, Detlev W.}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-309-1}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72260}, publisher = {Universit{\"a}t Potsdam}, pages = {289}, year = {2014}, abstract = {Zwischen den Juristischen Fakult{\"a}ten der Universit{\"a}t Szeged und der Universit{\"a}t Potsdam besteht seit etlichen Jahren eine fruchtbare Kooperation in der Lehre. Durch sie entwickelt sich allm{\"a}hlich eine wissenschaftliche Zusammenarbeit. Gemeinsame Konferenzen und Publikationen sind daf{\"u}r ein Beweis. Der vorliegende Band ist das Resultat dieser Kooperation. Der Buchtitel kennzeichnet das Engagement der ungarischen und der deutschen Juristen sowie die gemeinsamen Werte, welche der europ{\"a}ischen Rechtsentwicklung im 21. Jahrhundert zugrunde liegen und die Dogmatik der verschiedenen Rechtsgebiete verkn{\"u}pfen. Die einzelnen Beitr{\"a}ge legen dabei Zeugnis ab von der ganzen Breite der Interessen der ungarischen und deutschen Juristen.}, language = {de} } @misc{Schmidt2014, type = {Master Thesis}, author = {Schmidt, Oliver}, title = {Gewaltt{\"a}tiger Protest im Vorm{\"a}rz}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-310-7}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72253}, school = {Universit{\"a}t Potsdam}, pages = {116}, year = {2014}, abstract = {Historisch wie aktuell werden durch gewaltt{\"a}tige soziale Auseinandersetzungen bestehende gesellschaftliche Ordnungen infrage gestellt. In der Geschichtswissenschaft wie in der Soziologie waren Tumulte, Aufst{\"a}nde oder soziale Erhebungen immer wieder Gegenstand von Untersuchungen. W{\"a}hrend der historische Zugriff auf diese Ph{\"a}nomene gew{\"o}hnlich durch detaillierte Beschreibungen historische Abl{\"a}ufe genau zu rekonstruieren versucht hat, um diese verstehen zu k{\"o}nnen, geht es soziologischen Arbeiten zumeist um einen viel st{\"a}rker generalisierenden und erkl{\"a}renden Zugriff. Zwar gab es immer wieder Anl{\"a}ufe, diese scheinbar un{\"u}berbr{\"u}ckbare Differenz zwischen den Disziplinen zu {\"u}berwinden, doch alle die Versuche m{\"u}ssen als mehr oder weniger gescheitert angesehen werden. Nach wie vor gilt deshalb, dass mit der ausschließlichen Konzentration auf die je eigene disziplin{\"a}re Herangehensweise viel Erkenntnispotenzial verschenkt wird. Aus diesem Grund unterbreitet die vorliegende Studie einen neuen Vorschlag, Geschichtswissenschaft und Soziologie zusammenzubringen. Der Verfasser unternimmt hier den Versuch, die beiden vermeintlich so gegens{\"a}tzlichen Auffassungen von Wissenschaftlichkeit {\"u}ber eine gemeinsame methodologische Perspektive zusammenzuf{\"u}hren und auf dieser Grundlage einen vereinten, erkl{\"a}renden Zugriff von Geschichtswissenschaft und Soziologie zu skizzieren, der nach dem „Wie" eines Ereignisses fragt, zugleich aber auch erkl{\"a}ren will, „warum" es dazu gekommen ist. Das vorliegende Buch untersucht auf dieser methodologischen Grundlage und mittels eines historisch-soziologischen Zugangs sozialen Protest im Vorm{\"a}rz, es schließt an Arbeiten der historischen Soziologie und Sozialgeschichte an und entwickelt dazu einen stringenten historisch-soziologischen Erkl{\"a}rungsansatz.}, language = {de} } @book{OPUS4-7051, title = {Potsdamer Lateintage 2011-2013}, editor = {G{\"a}rtner, Ursula}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-305-3}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-70513}, publisher = {Universit{\"a}t Potsdam}, pages = {116}, year = {2014}, abstract = {Auch nach Abschluss unseres Brandenburger Antike-Denkwerks (BrAnD) mit dem letzten Durchgang 2010/11 fand jedes Jahr der Potsdamer Lateintag statt ‒ zu ganz unterschiedlichen Themen und mit ca. 500 Teilnehmerinnen und Teilnehmern immer sehr gut besucht: 2011: Antike Geschichtsschreibung, 2012: Tod und Jenseits, 2013: R{\"o}mische Religion. Der Band versammelt die Vortr{\"a}ge dieser vergangenen Veranstaltungen von N. Holzberg, B. Labahn, Chr. Kunst, S. B{\"u}ttner-von St{\"u}lpnagel, V. Rosenberger und D. Šterbenc Erker.}, language = {de} } @phdthesis{Ehlers2014, author = {Ehlers, Nadja}, title = {Die Entwicklung der {\"o}ffentlich-rechtlichen Gef{\"a}hrdungshaftung in Deutschland}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72381}, school = {Universit{\"a}t Potsdam}, pages = {XXIX, 131}, year = {2014}, abstract = {Inhalt der Arbeit ist es, einen {\"U}berblick {\"u}ber die historische Entwicklung der {\"o}ffentlich-rechtlichen Gef{\"a}hrdungshaftung in Deutschland vom 18. Jahrhundert bis heute zu geben sowie ihre praktische Bedeutung zu analysieren. Dabei wird zwischen den unterschiedlichen Gesetzgebungen, Rechtsprechungen und den theoretischen L{\"o}sungsans{\"a}tzen der {\"o}ffentlich-rechtlichen Gef{\"a}hrdungshaftung unterschieden und insbesondere letzteres problematisiert. Ferner wird auf das Verh{\"a}ltnis zu den grundrechtlichen Schutzpflichten, den sozialen Risikotatbest{\"a}nden, dem sozialrechtlichen Herstellungsanspruch und den Tumultsch{\"a}den eingegangen.}, language = {de} } @phdthesis{Negri2014, author = {Negri, Michael}, title = {How coaches influence referee decisions}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-72247}, school = {Universit{\"a}t Potsdam}, pages = {132}, year = {2014}, abstract = {The work elaborates on the question if coaches in non-professional soccer can influence referee decisions. Modeled from a principal-agent perspective, the managing referee boards can be seen as the principal. They aim at facilitating a fair competition which is in accordance with the existing rules and regulations. In doing so, the referees are assigned as impartial agents on the pitch. The coaches take over a non-legitimate principal-like role trying to influence the referees even though they do not have the formal right to do so. Separate questionnaires were set up for referees and coaches. The coach questionnaire aimed at identifying the extent and the forms of influencing attempts by coaches. The referee questionnaire tried to elaborate on the questions if referees take notice of possible influencing attempts and how they react accordingly. The results were put into relation with official match data in order to identify significant influences on personal sanctions (yellow cards, second yellow cards, red cards) and the match result. It is found that there is a slight effect on the referee's decisions. However, this effect is rather disadvantageous for the influencing coach and there is no evidence for an impact on the match result itself.}, language = {en} } @phdthesis{Paepke2014, author = {P{\"a}pke, Carola}, title = {Regulation of respiration during low oxygen availability}, school = {Universit{\"a}t Potsdam}, pages = {144}, year = {2014}, language = {en} } @phdthesis{Tinnefeld2014, author = {Tinnefeld, Christian}, title = {Building a columnar database on shared main memory-based storage}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-72063}, school = {Universit{\"a}t Potsdam}, pages = {175}, year = {2014}, abstract = {In the field of disk-based parallel database management systems exists a great variety of solutions based on a shared-storage or a shared-nothing architecture. In contrast, main memory-based parallel database management systems are dominated solely by the shared-nothing approach as it preserves the in-memory performance advantage by processing data locally on each server. We argue that this unilateral development is going to cease due to the combination of the following three trends: a) Nowadays network technology features remote direct memory access (RDMA) and narrows the performance gap between accessing main memory inside a server and of a remote server to and even below a single order of magnitude. b) Modern storage systems scale gracefully, are elastic, and provide high-availability. c) A modern storage system such as Stanford's RAMCloud even keeps all data resident in main memory. Exploiting these characteristics in the context of a main-memory parallel database management system is desirable. The advent of RDMA-enabled network technology makes the creation of a parallel main memory DBMS based on a shared-storage approach feasible. This thesis describes building a columnar database on shared main memory-based storage. The thesis discusses the resulting architecture (Part I), the implications on query processing (Part II), and presents an evaluation of the resulting solution in terms of performance, high-availability, and elasticity (Part III). In our architecture, we use Stanford's RAMCloud as shared-storage, and the self-designed and developed in-memory AnalyticsDB as relational query processor on top. AnalyticsDB encapsulates data access and operator execution via an interface which allows seamless switching between local and remote main memory, while RAMCloud provides not only storage capacity, but also processing power. Combining both aspects allows pushing-down the execution of database operators into the storage system. We describe how the columnar data processed by AnalyticsDB is mapped to RAMCloud's key-value data model and how the performance advantages of columnar data storage can be preserved. The combination of fast network technology and the possibility to execute database operators in the storage system opens the discussion for site selection. We construct a system model that allows the estimation of operator execution costs in terms of network transfer, data processed in memory, and wall time. This can be used for database operators that work on one relation at a time - such as a scan or materialize operation - to discuss the site selection problem (data pull vs. operator push). Since a database query translates to the execution of several database operators, it is possible that the optimal site selection varies per operator. For the execution of a database operator that works on two (or more) relations at a time, such as a join, the system model is enriched by additional factors such as the chosen algorithm (e.g. Grace- vs. Distributed Block Nested Loop Join vs. Cyclo-Join), the data partitioning of the respective relations, and their overlapping as well as the allowed resource allocation. We present an evaluation on a cluster with 60 nodes where all nodes are connected via RDMA-enabled network equipment. We show that query processing performance is about 2.4x slower if everything is done via the data pull operator execution strategy (i.e. RAMCloud is being used only for data access) and about 27\% slower if operator execution is also supported inside RAMCloud (in comparison to operating only on main memory inside a server without any network communication at all). The fast-crash recovery feature of RAMCloud can be leveraged to provide high-availability, e.g. a server crash during query execution only delays the query response for about one second. Our solution is elastic in a way that it can adapt to changing workloads a) within seconds, b) without interruption of the ongoing query processing, and c) without manual intervention.}, language = {en} } @phdthesis{Mauri2014, author = {Mauri, Marco}, title = {A model for sigma factor competition in bacterial cells}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-72098}, school = {Universit{\"a}t Potsdam}, pages = {167}, year = {2014}, abstract = {Bacteria respond to changing environmental conditions by switching the global pattern of expressed genes. In response to specific environmental stresses the cell activates several stress-specific molecules such as sigma factors. They reversibly bind the RNA polymerase to form the so-called holoenzyme and direct it towards the appropriate stress response genes. In exponentially growing E. coli cells, the majority of the transcriptional activity is carried out by the housekeeping sigma factor, while stress responses are often under the control of alternative sigma factors. Different sigma factors compete for binding to a limited pool of RNA polymerase (RNAP) core enzymes, providing a mechanism for cross talk between genes or gene classes via the sharing of expression machinery. To quantitatively analyze the contribution of sigma factor competition to global changes in gene expression, we develop a thermodynamic model that describes binding between sigma factors and core RNAP at equilibrium, transcription, non-specific binding to DNA and the modulation of the availability of the molecular components. Association of housekeeping sigma factor to RNAP is generally favored by its abundance and higher binding affinity to the core. In order to promote transcription by alternative sigma subunits, the bacterial cell modulates the transcriptional efficiency in a reversible manner through several strategies such as anti-sigma factors, 6S RNA and generally any kind of transcriptional regulators (e.g. activators or inhibitors). By shifting the outcome of sigma factor competition for the core, these modulators bias the transcriptional program of the cell. The model is validated by comparison with in vitro competition experiments, with which excellent agreement is found. We observe that transcription is affected via the modulation of the concentrations of the different types of holoenzymes, so saturated promoters are only weakly affected by sigma factor competition. However, in case of overlapping promoters or promoters recognized by two types of sigma factors, we find that even saturated promoters are strongly affected. Active transcription effectively lowers the affinity between the sigma factor driving it and the core RNAP, resulting in complex cross talk effects and raising the question of how their in vitro measure is relevant in the cell. We also estimate that sigma factor competition is not strongly affected by non-specific binding of core RNAPs, sigma factors, and holoenzymes to DNA. Finally, we analyze the role of increased core RNAP availability upon the shut-down of ribosomal RNA transcription during stringent response. We find that passive up-regulation of alternative sigma-dependent transcription is not only possible, but also displays hypersensitivity based on the sigma factor competition. Our theoretical analysis thus provides support for a significant role of passive control during that global switch of the gene expression program and gives new insights into RNAP partitioning in the cell.}, language = {en} } @book{Holtmann2014, author = {Holtmann, Dieter}, title = {Wohlstand und Wohlfahrt der Nationen im Wandel}, editor = {Holtmann, Dieter}, publisher = {Shaker Verlag}, address = {Aachen}, isbn = {978-3-8440-2845-4}, publisher = {Universit{\"a}t Potsdam}, pages = {386}, year = {2014}, abstract = {Im Folgenden schlage ich ein System gesellschaftlicher Dauerbeobachtung f{\"u}r den internationalen Vergleich von Gesellschaften vor, indem aufgrund einer Auseinandersetzung mit der sozialphilosophischen Diskussion acht Performanzkriterien f{\"u}r den Vergleich von Lebensbedingungen bzw. der „Wohlfahrt der Nationen" entwickelt werden: Wohlstand und Wachstum; {\"o}kologische Nachhaltigkeit; Innovation; soziale Sicherung durch Unterst{\"u}tzungsleistungen im Risikofall sowie vorsorgend durch Bildungsinvestitionen; Anerkennung der Besonderheiten (Frauenfreundlichkeit und Migrantenfreundlichkeit); Gleichheit der Teilhabe; soziale Integration; Autonomie („freedom of choice and capabilities"). - Der Wandel von Wohlstand und Wohlfahrt wird im Kontext der Weltfinanzkrise und der folgenden großen Rezession betrachtet. In meinem Lehrforschungsprojekt haben wir in einem ersten Schritt ab 2004 die Operationalisierung der gesellschaftlich w{\"u}nschenswerten Ziele entwickelt und erste Auswertungen f{\"u}r 28 L{\"a}nder vorgenommen (Holtmann, Dieter u. a.: Zur Performanz von Wohlfahrtsregimen und zu den Unterst{\"u}tzungspotentialen f{\"u}r die verschiedenen Wohlfahrtskonzepte. Potsdam 2006: Universit{\"a}tsverlag). Im n{\"a}chsten Schritt haben wir die Operationalisierungen weiterentwickelt und ab 2007 36 L{\"a}nder in den Vergleich einbezogen (Holtmann, Dieter u.a.: Die Sozialstruktur der Bundesrepublik Deutschland im internationalen Vergleich. Potsdam 20127: Universit{\"a}tsverlag). Im dritten Schritt haben wir diesen systematischen L{\"a}ndervergleich durch Fallstudien zu den einzelnen L{\"a}ndern erg{\"a}nzt (Holtmann, Dieter u.a.: Die Wohlfahrt der Nationen: 40 L{\"a}nder-Fallstudien zu den Institutionen und ihrer Performanz. Aachen 2012: Shaker). In meinem Ansatz gehe ich nicht von einem einheitlichen Pfad der Modernisierung in Richtung Wachstum, Partizipation und Inklusion aus, sondern unterscheide - in Erweiterung der „drei Welten des Wohlfahrtskapitalismus" von Esping-Andersen (1990) - f{\"u}r die ber{\"u}cksichtigten L{\"a}nder (u.a. alle EU-Mitglieder) insbesondere folgende sechs verschiedene institutionelle Entwicklungspfade der Modernisierung: Der sozialdemokratisch-universalistische Pfad, der wirtschaftsliberale Pfad, der Status-konservierende Pfad, der „familistische" Pfad, die Entwicklung der Gruppe der post-sozialistischen L{\"a}nder, die sich in einem Prozess der Ausdifferenzierung befinden, und den produktivistischen, aufstiegsorientierten Modernisierungspfad Ostasiens. Als Erweiterung {\"u}ber die 36 entwickelten L{\"a}nder unserer Sozialstrukturvergleiche hinaus ber{\"u}cksichtige ich die f{\"u}nf Aufsteiger S{\"u}dkorea, Brasilien, S{\"u}dafrika, China und Indien sowie mit Kroatien und Serbien ein neues bzw. prospektives EU-Mitglied. Als gesellschaftliche Teilbereiche zur Analyse der Sozialstrukturen nach der Weltfinanzkrise werden behandelt: Bildung und Bildungsregime; Dienstleistungs-gesellschaften und Erwerbst{\"a}tigkeit; Wohlfahrtsregime und soziale Sicherung (Bildung und nachsorgende soziale Sicherung); Wohlstand, Einkommen, Verm{\"o}gen und Armut; Individualisierung und ihre Gegenbewegungen; soziale Ungleichheiten zwischen Frauen und M{\"a}nnern; Bev{\"o}lkerungsstruktur und Lebensformen; zusammenfassender Vergleich von Lebensbedingungen in den verschiedenen L{\"a}ndern und Wohlfahrtsregimen.}, language = {de} } @phdthesis{Budach2014, author = {Budach, Dennis B.}, title = {Synthese von Dendrimeren aus Oligospiroketal-Bausteinen}, school = {Universit{\"a}t Potsdam}, pages = {175}, year = {2014}, language = {de} } @phdthesis{Holler2014, author = {Holler, Markus}, title = {Photon reconstruction for the H.E.S.S. 28 m telescope and analysis of Crab Nebula and galactic centre observations}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72099}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {In the presented thesis, the most advanced photon reconstruction technique of ground-based γ-ray astronomy is adapted to the H.E.S.S. 28 m telescope. The method is based on a semi-analytical model of electromagnetic particle showers in the atmosphere. The properties of cosmic γ-rays are reconstructed by comparing the camera image of the telescope with the Cherenkov emission that is expected from the shower model. To suppress the dominant background from charged cosmic rays, events are selected based on several criteria. The performance of the analysis is evaluated with simulated events. The method is then applied to two sources that are known to emit γ-rays. The first of these is the Crab Nebula, the standard candle of ground-based γ-ray astronomy. The results of this source confirm the expected performance of the reconstruction method, where the much lower energy threshold compared to H.E.S.S. I is of particular importance. A second analysis is performed on the region around the Galactic Centre. The analysis results emphasise the capabilities of the new telescope to measure γ-rays in an energy range that is interesting for both theoretical and experimental astrophysics. The presented analysis features the lowest energy threshold that has ever been reached in ground-based γ-ray astronomy, opening a new window to the precise measurement of the physical properties of time-variable sources at energies of several tens of GeV.}, language = {en} } @article{NiproschkeSchubarth2014, author = {Niproschke, Saskia and Schubarth, Wilfried}, title = {Nachhaltige Pr{\"a}vention von Kriminalit{\"a}t, Gewalt und Rechtsextremismus}, series = {Nachhaltige Pr{\"a}vention von Kriminalit{\"a}t, Gewalt und Rechtsextremismus : Beitr{\"a}ge aus Wissenschaft und Praxis}, journal = {Nachhaltige Pr{\"a}vention von Kriminalit{\"a}t, Gewalt und Rechtsextremismus : Beitr{\"a}ge aus Wissenschaft und Praxis}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-71147}, pages = {19 -- 56}, year = {2014}, abstract = {1. Einf{\"u}hrung 2. Kriminalit{\"a}t, Gewalt und Rechtsextremismus: Begriffsgenese und Modell „nachhaltiger Pr{\"a}vention" 2.1 Entwicklungsorientierung 2.2 Kommunale Netzwerkarbeit 2.3 Evaluation und Qualit{\"a}t 3. Kriminal- und Gewaltpr{\"a}vention im Land Brandenburg 3.1 Gewaltpr{\"a}vention an einer Brennpunkt-Schule am Beispiel von „Wir f{\"u}r uns" 3.2 Regionale Netzwerkarbeit am Beispiel von „Mit-Ein-Ander in Kita und Schule" 3.3 Rechtsextremismuspr{\"a}vention am Beispiel des Handlungskonzepts „Tolerantes Brandenburg" 4. Folgerungen und Empfehlungen Literatur}, language = {de} } @phdthesis{Trabant2014, author = {Trabant, Christoph}, title = {Ultrafast photoinduced phase transitions in complex materials probed by time-resolved resonant soft x-ray diffraction}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71377}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {In processing and data storage mainly ferromagnetic (FM) materials are being used. Approaching physical limits, new concepts have to be found for faster, smaller switches, for higher data densities and more energy efficiency. Some of the discussed new concepts involve the material classes of correlated oxides and materials with antiferromagnetic coupling. Their applicability depends critically on their switching behavior, i.e., how fast and how energy efficient material properties can be manipulated. This thesis presents investigations of ultrafast non-equilibrium phase transitions on such new materials. In transition metal oxides (TMOs) the coupling of different degrees of freedom and resulting low energy excitation spectrum often result in spectacular changes of macroscopic properties (colossal magneto resistance, superconductivity, metal-to-insulator transitions) often accompanied by nanoscale order of spins, charges, orbital occupation and by lattice distortions, which make these material attractive. Magnetite served as a prototype for functional TMOs showing a metal-to-insulator-transition (MIT) at T = 123 K. By probing the charge and orbital order as well as the structure after an optical excitation we found that the electronic order and the structural distortion, characteristics of the insulating phase in thermal equilibrium, are destroyed within the experimental resolution of 300 fs. The MIT itself occurs on a 1.5 ps timescale. It shows that MITs in functional materials are several thousand times faster than switching processes in semiconductors. Recently ferrimagnetic and antiferromagnetic (AFM) materials have become interesting. It was shown in ferrimagnetic GdFeCo, that the transfer of angular momentum between two opposed FM subsystems with different time constants leads to a switching of the magnetization after laser pulse excitation. In addition it was theoretically predicted that demagnetization dynamics in AFM should occur faster than in FM materials as no net angular momentum has to be transferred out of the spin system. We investigated two different AFM materials in order to learn more about their ultrafast dynamics. In Ho, a metallic AFM below T ≈ 130 K, we found that the AFM Ho can not only be faster but also ten times more energy efficiently destroyed as order in FM comparable metals. In EuTe, an AFM semiconductor below T ≈ 10 K, we compared the loss of magnetization and laser-induced structural distortion in one and the same experiment. Our experiment shows that they are effectively disentangled. An exception is an ultrafast release of lattice dynamics, which we assign to the release of magnetostriction. The results presented here were obtained with time-resolved resonant soft x-ray diffraction at the Femtoslicing source of the Helmholtz-Zentrum Berlin and at the free-electron laser in Stanford (LCLS). In addition the development and setup of a new UHV-diffractometer for these experiments will be reported.}, language = {en} } @phdthesis{Burdack2014, author = {Burdack, Doreen}, title = {Water management policies and their impact on irrigated crop production in the Murray-Darling Basin, Australia}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-306-0}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72245}, school = {Universit{\"a}t Potsdam}, pages = {307}, year = {2014}, abstract = {The economic impact analysis contained in this book shows how irrigation farming is particularly susceptible when applying certain water management policies in the Australian Murray-Darling Basin, one of the world largest river basins and Australia's most fertile region. By comparing different pricing and non-pricing water management policies with the help of the Water Integrated Market Model, it is found that the impact of water demand reducing policies is most severe on crops that need to be intensively irrigated and are at the same time less water productive. A combination of increasingly frequent and severe droughts and the application of policies that decrease agricultural water demand, in the same region, will create a situation in which the highly water dependent crops rice and cotton cannot be cultivated at all.}, language = {en} } @book{Şener2014, author = {Şener, Ula{\c{s}}}, title = {Die Neutralit{\"a}tstheorie des Geldes}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-307-7}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72367}, publisher = {Universit{\"a}t Potsdam}, pages = {v, 87}, year = {2014}, abstract = {{\"O}konomen wie Wirtschaftspolitiker berufen sich auf die Neutralit{\"a}tstheorie des Geldes, wenn sie eine Entpolitisierung der Geldpolitik fordern. Sowohl die Theorie der Geldneutralit{\"a}t als auch das Paradigma der Entpolitisierung der Geldpolitik sind jedoch problematisch. Die polit{\"o}konomischen Entwicklungen nach der globalen Finanz- und Wirtschaftskrise 2007/2008 und die j{\"u}ngsten Kontroversen {\"u}ber die Rolle und Bedeutung von Geld haben dies deutlich vor Augen gef{\"u}hrt. Die vorliegende Arbeit diskutiert zun{\"a}chst die konzeptionellen Grundlagen und theoretischen Modelle der Geldneutralit{\"a}t. Anschließend werden die zentralen theoretischen Annahmen und Aussagen der Neutralit{\"a}tstheorie aus einer kritischen heterodoxen Perspektive hinterfragt. Es wird argumentiert, dass Geld eine nicht-neutrale Produktionskraft ist, die weder {\"o}konomisch noch sozial neutral ist. Die Bedingungen, unter denen Geld verf{\"u}gbar ist und zirkuliert, sind richtungsweisend f{\"u}r die {\"o}konomische Entwicklung. Daher kann es auch kein neutrales Geld oder gar eine apolitische Geldpolitik geben.}, language = {de} } @inproceedings{ArlettazBadoBakosKovacsetal.2014, author = {Arlettaz, Jordane and Bad{\´o}, Attila and Bakos-Kov{\´a}cs, Kitti and Bat{\´o}, Szilvia and B{\´o}ka, J{\´a}nos and Congnard, Laureline and Csatl{\´o}s, Erzs{\´e}bet and Gedeon, Magdolna and Guemar, Carine and Hajd{\´u}, D{\´o}ra and Jacs{\´o}, Judit and Kelemen, Katalin and Fekete, Bal{\´a}zs and Kruzslicz, P{\´e}ter and Mezei, P{\´e}ter and Szűcs, T{\"u}nde and Zolt{\´a}n, P{\´e}teri and Szab{\´o}, B{\´e}la P.}, title = {Internationale Konferenz zum zehnj{\"a}hrigen Bestehen des Instituts f{\"u}r Rechtsvergleichung der Universit{\"a}t Szeged}, editor = {Bad{\´o}, Attila and Belling, Detlev W. and B{\´o}ka, J{\´a}nos and Mezei, P{\´e}ter}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-308-4}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72039}, pages = {296}, year = {2014}, abstract = {Die Konferenz „International Conference for the 10th Anniversary of the Institute of Comparative Law" hat am 24. Mai 2013 in Szeged stattgefunden. Im Rahmen der viersprachigen Konferenz haben mehr als dreißig Teilnehmer ihre Forschungsergebnisse pr{\"a}sentiert. Der Essay von Zolt{\´a}n P{\´e}teri blickt auf die Disziplin aus der Perspektive der Wissenschaftsgeschichte. Katalin Kelemen und Bal{\´a}zs Fekete gehen in ihrem Aufsatz der Frage nach, welchen Weg die Versuche der Klassifikation der Rechtssysteme von Osteuropa in der sp{\"a}ten Phase der Umbr{\"u}che der 1980/90er Jahren genommen haben. Die historische Betrachtungsweise mit Bezug auf Rechtsgeschichte und Rechtsvergleichung spiegelt sich auch in anderen Essays wider, vor allem in den Aufs{\"a}tzen von Szilvia Bat{\´o}, Magdolna Gedeon und B{\´e}la Szab{\´o} P. sowie auch in den Aufs{\"a}tzen von P{\´e}ter Mezei und T{\"u}nde Szűcs. Attila Bad{\´o} analysiert die Rechtsvergleichung aus der Sicht des Rechts, der Soziologie und der Politikwissenschaft anhand von Untersuchungen {\"u}ber das Sanktionsystem der Richter in den USA. Diese politikwissenschaftliche Seite wird auch in den Aufs{\"a}tzen {\"u}ber die aktuellen Fragen der europ{\"a}ischen Integration von Carine Guemar und Laureline Congnard betont. Eine Reihe von Aufs{\"a}tzen behandeln die konventionelle normative Komparatistik auf dem Gebiet des Verfassungsrechts (Jordane Arlettaz und P{\´e}ter Kruzslicz), Gesellschaftsrechts (Kitti Bakos-Kov{\´a}cs), Urheberrechts (D{\´o}ra Hajd{\´u}) und Steuerrechts (Judit Jacs{\´o}). Daneben bilden eine weitere Gruppe die Aufs{\"a}tze von J{\´a}nos B{\´o}ka und Erzs{\´e}bet Csatl{\´o}s, die die Verwendung der vergleichenden Methode in der Praxis der Rechtsprechung untersuchen. Die Rechtsvergleichung ist eine sich dynamisch entwickelnde Disziplin. Die Konferenz und dieser Band dienen nicht nur der W{\"u}rdigung der bisherigen Arbeit des Instituts f{\"u}r Rechtsvergleichung, sondern zeigen gleichzeitig neue Ziele auf. Die wichtigsten Grunds{\"a}tze bleiben aber fest verankert auch in einem sich stets ver{\"a}ndernden rechtlichen und geistigen Umfeld. Das Motto des Instituts lautet „instruere et docere omnes qui edoceri desiderant" - „alle lehren, die lernen wollen." Auch in den folgenden Jahrzehnten werden uns der Wille des Lernens und Lehrens, die Freiheit der Forschung sowie die {\"U}bertragung und Weiterentwicklung der ungarischen wie globalen Rechtskultur leiten.}, language = {de} } @phdthesis{Merkel2014, author = {Merkel, Roswitha}, title = {Untersuchung zur Synthese und Eigenschaften von komplexen Oligospiroketalen}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72561}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Es ist in dieser Arbeit gelungen, starre Oligospiroketal(OSK)-St{\"a}be als Grundbausteine f{\"u}r komplexe 2D- und 3D-Systeme zu verwenden. Dazu wurde ein difunktionalisierter starrer Stab synthetisiert, der mit seines Gleichen und anderen verzweigten Funktionalisierungseinheiten in Azid-Alkin-Klickreaktionen eingesetzt wurde. An zwei {\"u}ber Klickreaktion verkn{\"u}pften OSK-St{\"a}ben konnten mittels theoretischer Berechnungen Aussagen {\"u}ber die neuartige Bimodalit{\"a}t der Konformation getroffen werden. Es wurde daf{\"u}r der Begriff Gelenkstab eingef{\"u}hrt, da die Molek{\"u}le um ein Gelenk gedreht sowohl gestreckt als auch geknickt vorliegen k{\"o}nnen. Aufbauend auf diesen Erkenntnissen konnte gezeigt werden, dass nicht nur gezielt große Polymere aus bis zu vier OSK-St{\"a}ben synthetisiert werden k{\"o}nnen, sondern es auch m{\"o}glich ist, durch gezielte {\"A}nderung von Reaktionsbedingungen der Klickreaktion auch Cyclen aus starren OSK-St{\"a}ben herzustellen. Die neu entwickelte Substanzklasse der Gelenkst{\"a}be wurde im Hinblick auf die Steuerung des vorliegenden Gleichgewichts zwischen geknicktem und gestrecktem Gelenkstab hin untersucht. Daf{\"u}r wurde der Gelenkstab mit Pyrenylresten in terminaler Position versehen. Es wurde durch Fluoreszenzmessungen festgestellt, dass das Gleichgewicht z. B. durch die Temperatur oder die Wahl des L{\"o}sungsmittels beeinflussbar ist. F{\"u}r vielfache Anwendungen wurde eine vereinfachte Synthesestrategie gefunden, mit der eine beliebige Funktionalisierung in nur einem Syntheseschritt erreicht werden konnte. Es konnten photoaktive Gelenkst{\"a}be synthetisiert werden, die gezielt zur intramolekularen Dimerisierung gef{\"u}hrt werden konnten. Zus{\"a}tzlich wurde durch Aminos{\"a}uren ein Verkn{\"u}pfungselement am Ende der Gelenkst{\"a}be gefunden, das eine stereoselektive Synthese von Mehrfachfunktionalisierungen zul{\"a}sst. Die Synthese der komplexen Gelenkst{\"a}be wurde als ein neuartiges Gebiet aufgezeigt und bietet ein breites Forschungspotential f{\"u}r weitere Anwendungen z. B. in der Biologie (als molekulare Schalter f{\"u}r Ionentransporte) und in der Materialchemie (als Ladungs- oder Energietransporteure).}, language = {de} } @phdthesis{GuzmanPerez2014, author = {Guzman-Perez, Valentina}, title = {Effect of benzylglucosinolate on signaling pathways associated with type 2 diabetes prevention}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72351}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Type 2 diabetes (T2D) is a health problem throughout the world. In 2010, there were nearly 230 million individuals with diabetes worldwide and it is estimated that in the economically advanced countries the cases will increase about 50\% in the next twenty years. Insulin resistance is one of major features in T2D, which is also a risk factor for metabolic and cardiovascular complications. Epidemiological and animal studies have shown that the consumption of vegetables and fruits can delay or prevent the development of the disease, although the underlying mechanisms of these effects are still unclear. Brassica species such as broccoli (Brassica oleracea var. italica) and nasturtium (Tropaeolum majus) possess high content of bioactive phytochemicals, e.g. nitrogen sulfur compounds (glucosinolates and isothiocyanates) and polyphenols largely associated with the prevention of cancer. Isothiocyanates (ITCs) display their anti-carcinogenic potential by inducing detoxicating phase II enzymes and increasing glutathione (GSH) levels in tissues. In T2D diabetes an increase in gluconeogenesis and triglyceride synthesis, and a reduction in fatty acid oxidation accompanied by the presence of reactive oxygen species (ROS) are observed; altogether is the result of an inappropriate response to insulin. Forkhead box O (FOXO) transcription factors play a crucial role in the regulation of insulin effects on gene expression and metabolism, and alterations in FOXO function could contribute to metabolic disorders in diabetes. In this study using stably transfected human osteosarcoma cells (U-2 OS) with constitutive expression of FOXO1 protein labeled with GFP (green fluorescent protein) and human hepatoma cells HepG2 cell cultures, the ability of benzylisothiocyanate (BITC) deriving from benzylglucosinolate, extracted from nasturtium to modulate, i) the insulin-signaling pathway, ii) the intracellular localization of FOXO1 and iii) the expression of proteins involved in glucose metabolism, ROS detoxification, cell cycle arrest and DNA repair was evaluated. BITC promoted oxidative stress and in response to that induced FOXO1 translocation from cytoplasm into the nucleus antagonizing the insulin effect. BITC stimulus was able to down-regulate gluconeogenic enzymes, which can be considered as an anti-diabetic effect; to promote antioxidant resistance expressed by the up-regulation in manganese superoxide dismutase (MnSOD) and detoxification enzymes; to modulate autophagy by induction of BECLIN1 and down-regulation of the mammalian target of rapamycin complex 1 (mTORC1) pathway; and to promote cell cycle arrest and DNA damage repair by up-regulation of the cyclin-dependent kinase inhibitor (p21CIP) and Growth Arrest / DNA Damage Repair (GADD45). Except for the nuclear factor (erythroid derived)-like2 (NRF2) and its influence in the detoxification enzymes gene expression, all the observed effects were independent from FOXO1, protein kinase B (AKT/PKB) and NAD-dependent deacetylase sirtuin-1 (SIRT1). The current study provides evidence that besides of the anticarcinogenic potential, isothiocyanates might have a role in T2D prevention. BITC stimulus mimics the fasting state, in which insulin signaling is not triggered and FOXO proteins remain in the nucleus modulating gene expression of their target genes, with the advantage of a down-regulation of gluconeogenesis instead of its increase. These effects suggest that BITC might be considered as a promising substance in the prevention or treatment of T2D, therefore the factors behind of its modulatory effects need further investigation.}, language = {en} } @article{DorschDoerfler2014, author = {Dorsch, Christian and D{\"o}rfler, Thomas}, title = {Organized hypocrisy of the international community}, series = {Zeitschrift f{\"u}r Genozidforschung}, volume = {15}, journal = {Zeitschrift f{\"u}r Genozidforschung}, number = {1-2}, publisher = {Velbr{\"u}ck Wissenschaft}, address = {Weilerswist}, issn = {1438-8332}, doi = {10.5771/1438-8332-2014-1-2-8}, pages = {8 -- 31}, year = {2014}, language = {en} } @article{RichterDoellner2014, author = {Richter, Rico and D{\"o}llner, J{\"u}rgen Roland Friedrich}, title = {Concepts and techniques for integration, analysis and visualization of massive 3D point clouds}, series = {Computers, environment and urban systems}, volume = {45}, journal = {Computers, environment and urban systems}, publisher = {Elsevier}, address = {Oxford}, issn = {0198-9715}, doi = {10.1016/j.compenvurbsys.2013.07.004}, pages = {114 -- 124}, year = {2014}, abstract = {Remote sensing methods, such as LiDAR and image-based photogrammetry, are established approaches for capturing the physical world. Professional and low-cost scanning devices are capable of generating dense 3D point clouds. Typically, these 3D point clouds are preprocessed by GIS and are then used as input data in a variety of applications such as urban planning, environmental monitoring, disaster management, and simulation. The availability of area-wide 3D point clouds will drastically increase in the future due to the availability of novel capturing methods (e.g., driver assistance systems) and low-cost scanning devices. Applications, systems, and workflows will therefore face large collections of redundant, up-to-date 3D point clouds and have to cope with massive amounts of data. Hence, approaches are required that will efficiently integrate, update, manage, analyze, and visualize 3D point clouds. In this paper, we define requirements for a system infrastructure that enables the integration of 3D point clouds from heterogeneous capturing devices and different timestamps. Change detection and update strategies for 3D point clouds are presented that reduce storage requirements and offer new insights for analysis purposes. We also present an approach that attributes 3D point clouds with semantic information (e.g., object class category information), which enables more effective data processing, analysis, and visualization. Out-of-core real-time rendering techniques then allow for an interactive exploration of the entire 3D point cloud and the corresponding analysis results. Web-based visualization services are utilized to make 3D point clouds available to a large community. The proposed concepts and techniques are designed to establish 3D point clouds as base datasets, as well as rendering primitives for analysis and visualization tasks, which allow operations to be performed directly on the point data. Finally, we evaluate the presented system, report on its applications, and discuss further research challenges.}, language = {en} } @article{OmosaAmuguneNdundaetal.2014, author = {Omosa, Leonidah K. and Amugune, Beatrice and Ndunda, Beth and Milugo, Trizah K. and Heydenreich, Matthias and Yenesew, Abiy and Midiwo, Jacob O.}, title = {Antimicrobial flavonoids and diterpenoids from Dodonaea angustifolia}, series = {South African journal of botany : an international interdisciplinary journal for botanical sciences}, volume = {91}, journal = {South African journal of botany : an international interdisciplinary journal for botanical sciences}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0254-6299}, doi = {10.1016/j.sajb.2013.11.012}, pages = {58 -- 62}, year = {2014}, language = {en} } @article{LamannaKirschbaumTiedemann2014, author = {Lamanna, Francesco and Kirschbaum, Frank and Tiedemann, Ralph}, title = {De novo assembly and characterization of the skeletal muscle and electric organ transcriptomes of the African weakly electric fish Campylomormyrus compressirostris (Mormyridae, Teleostei)}, series = {Molecular ecology resources}, volume = {14}, journal = {Molecular ecology resources}, number = {6}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {1755-098X}, doi = {10.1111/1755-0998.12260}, pages = {1222 -- 1230}, year = {2014}, abstract = {African weakly electric fishes (Mormyridae) underwent an outstanding adaptive radiation (about 200 species), putatively owing to their ability to communicate through species-specific weak electric signals. The electric organ discharge (EOD) is produced by muscle-derived electrocytes organized in piles to form an electric organ. Despite the importance of this trait as a prezygotic isolation mechanism, genomic resources remained limited. We present here a first draft of the skeletal muscle and electric organ transcriptomes from the weakly electric fish species Campylomormyrus compressirostris, obtained using the Illumina HiSeq2000 sequencing technology. Approximately 6.8 Gbp of cDNA sequence data were produced from both tissues, resulting in 57268109 raw reads for the skeletal muscle and 46934923 for the electric organ, and assembled de novo into 46143 and 89270 contigs, respectively. About 50\% of both transcriptomes were annotated after protein databases search. The two transcriptomes show similar profiles in terms of Gene Ontology categories composition. We identified several candidate genes which are likely to play a central role in the production and evolution of the electric signal. For most of these genes, and for many other housekeeping genes, we were able to obtain the complete or partial coding DNA sequences (CDS), which can be used for the development of primers to be utilized in qRT-PCR experiments. We present also the complete mitochondrial genome and compare it to those available from other weakly electric fish species. Additionally, we located 1671 SSR-containing regions with their flanking sites and designed the relative primers. This study establishes a first step in the development of genomic tools aimed at understanding the role of electric communication during speciation.}, language = {en} } @article{StiefAltmannHoffmannetal.2014, author = {Stief, Anna and Altmann, Simone and Hoffmann, Karen and Pant, Bikram Datt and Scheible, Wolf-R{\"u}diger and B{\"a}urle, Isabel}, title = {Arabidopsis miR156 regulates tolerance to recurring environmental stress through SPL transcription factors}, series = {The plant cell}, volume = {26}, journal = {The plant cell}, number = {4}, publisher = {American Society of Plant Physiologists}, address = {Rockville}, issn = {1040-4651}, doi = {10.1105/tpc.114.123851}, pages = {1792 -- 1807}, year = {2014}, abstract = {Plants are sessile organisms that gauge stressful conditions to ensure survival and reproductive success. While plants in nature often encounter chronic or recurring stressful conditions, the strategies to cope with those are poorly understood. Here, we demonstrate the involvement of ARGONAUTE1 and the microRNA pathway in the adaptation to recurring heat stress (HS memory) at the physiological and molecular level. We show that miR156 isoforms are highly induced after HS and are functionally important for HS memory. miR156 promotes sustained expression of HS-responsive genes and is critical only after HS, demonstrating that the effects of modulating miR156 on HS memory do not reflect preexisting developmental alterations. miR156 targets SPL transcription factor genes that are master regulators of developmental transitions. SPL genes are posttranscriptionally downregulated by miR156 after HS, and this is critical for HS memory. Altogether, the miR156-SPL module mediates the response to recurring HS in Arabidopsis thaliana and thus may serve to integrate stress responses with development.}, language = {en} } @article{KabelitzKappelHennebergeretal.2014, author = {Kabelitz, Tina and Kappel, Christian and Henneberger, Kirstin and Benke, Eileen and Noeh, Christiane and B{\"a}urle, Isabel}, title = {eQTL mapping of transposon silencing reveals a position-dependent stable escape from epigenetic silencing and transposition of AtMu1 in thee arabidopsis lineage}, series = {The plant cell}, volume = {26}, journal = {The plant cell}, number = {8}, publisher = {American Society of Plant Physiologists}, address = {Rockville}, issn = {1040-4651}, doi = {10.1105/tpc.114.128512}, pages = {3261 -- 3271}, year = {2014}, abstract = {Transposons are massively abundant in all eukaryotic genomes and are suppressed by epigenetic silencing. Transposon activity contributes to the evolution of species; however, it is unclear how much transposition-induced variation exists at a smaller scale and how transposons are targeted for silencing. Here, we exploited differential silencing of the AtMu1c transposon in the Arabidopsis thaliana accessions Columbia (Col) and Landsberg erecta (Ler). The difference persisted in hybrids and recombinant inbred lines and was mapped to a single expression quantitative trait locus within a 20-kb interval. In Ler only, this interval contained a previously unidentified copy of AtMu1c, which was inserted at the 39 end of a protein-coding gene and showed features of expressed genes. By contrast, AtMu1c(Col) was intergenic and associated with heterochromatic features. Furthermore, we identified widespread natural AtMu1c transposition from the analysis of over 200 accessions, which was not evident from alignments to the reference genome. AtMu1c expression was highest for insertions within 39 untranslated regions, suggesting that this location provides protection from silencing. Taken together, our results provide a species-wide view of the activity of one transposable element at unprecedented resolution, showing that AtMu1c transposed in the Arabidopsis lineage and that transposons can escape epigenetic silencing by inserting into specific genomic locations, such as the 3' end of genes.}, language = {en} } @inproceedings{DeWittHubertsWernickeWippert2014, author = {De Witt Huberts, Jessie and Wernicke, Sarah and Wippert, Pia-Maria}, title = {The pain of being misunderstood: The impact of invalidation on pain sensation in chronic back pain patients}, series = {Psychosomatic medicine}, volume = {76}, booktitle = {Psychosomatic medicine}, number = {3}, publisher = {Lippincott Williams \& Wilkins}, address = {Philadelphia}, issn = {0033-3174}, pages = {A113 -- A114}, year = {2014}, language = {en} } @inproceedings{RectorOttawaWangetal.2014, author = {Rector, Michael V. and Ottawa, Fabian and Wang, Victor and Wippert, Pia-Maria}, title = {Test-retest reliability of hair cortisol concentration and correlations with physical activity levels in non-athletes}, series = {Medicine and science in sports and exercise : official journal of the American College of Sports Medicine}, volume = {46}, booktitle = {Medicine and science in sports and exercise : official journal of the American College of Sports Medicine}, number = {5}, publisher = {Lippincott Williams \& Wilkins}, address = {Philadelphia}, issn = {0195-9131}, pages = {222 -- 222}, year = {2014}, language = {en} } @phdthesis{Truemper2014, author = {Tr{\"u}mper, Jonas}, title = {Visualization techniques for the analysis of software behavior and related structures}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72145}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Software maintenance encompasses any changes made to a software system after its initial deployment and is thereby one of the key phases in the typical software-engineering lifecycle. In software maintenance, we primarily need to understand structural and behavioral aspects, which are difficult to obtain, e.g., by code reading. Software analysis is therefore a vital tool for maintaining these systems: It provides - the preferably automated - means to extract and evaluate information from their artifacts such as software structure, runtime behavior, and related processes. However, such analysis typically results in massive raw data, so that even experienced engineers face difficulties directly examining, assessing, and understanding these data. Among other things, they require tools with which to explore the data if no clear question can be formulated beforehand. For this, software analysis and visualization provide its users with powerful interactive means. These enable the automation of tasks and, particularly, the acquisition of valuable and actionable insights into the raw data. For instance, one means for exploring runtime behavior is trace visualization. This thesis aims at extending and improving the tool set for visual software analysis by concentrating on several open challenges in the fields of dynamic and static analysis of software systems. This work develops a series of concepts and tools for the exploratory visualization of the respective data to support users in finding and retrieving information on the system artifacts concerned. This is a difficult task, due to the lack of appropriate visualization metaphors; in particular, the visualization of complex runtime behavior poses various questions and challenges of both a technical and conceptual nature. This work focuses on a set of visualization techniques for visually representing control-flow related aspects of software traces from shared-memory software systems: A trace-visualization concept based on icicle plots aids in understanding both single-threaded as well as multi-threaded runtime behavior on the function level. The concept's extensibility further allows the visualization and analysis of specific aspects of multi-threading such as synchronization, the correlation of such traces with data from static software analysis, and a comparison between traces. Moreover, complementary techniques for simultaneously analyzing system structures and the evolution of related attributes are proposed. These aim at facilitating long-term planning of software architecture and supporting management decisions in software projects by extensions to the circular-bundle-view technique: An extension to 3-dimensional space allows for the use of additional variables simultaneously; interaction techniques allow for the modification of structures in a visual manner. The concepts and techniques presented here are generic and, as such, can be applied beyond software analysis for the visualization of similarly structured data. The techniques' practicability is demonstrated by several qualitative studies using subject data from industry-scale software systems. The studies provide initial evidence that the techniques' application yields useful insights into the subject data and its interrelationships in several scenarios.}, language = {en} } @article{D'Aprile2014, author = {D'Aprile, Iwan-Michelangelo}, title = {Aufkl{\"a}rungstransfer zwischen Sachsen und Preußen}, isbn = {978-3-95498-084-0}, year = {2014}, language = {de} } @article{D'Aprile2014, author = {D'Aprile, Iwan-Michelangelo}, title = {Mediums of communication and the development of an European constitutional discourse at the dawn of the nineteenth century}, series = {Ayer : revista de historia contempor{\´a}nea}, journal = {Ayer : revista de historia contempor{\´a}nea}, number = {94}, publisher = {Asociaci{\´o}n de Historia Contempor{\´a}nea}, address = {Madrid}, issn = {1134-2277}, pages = {49 -- 69}, year = {2014}, abstract = {In this article, entangled media history is presented as an approach to combine recent methodological developments towards an international turn in intellectual history on the one hand with the social history of ideas on the other. By concentrating on press networks, publishers, and media formats the various processes of constitutionalization and nationalization in the aftermath of the French Revolution and the Napoleonic period can be reconstructed as part of an emerging European public sphere. This is exemplified by the example of the political discourse of that time in Germany. In a first step, the international networks around the two most important German publishers, Johann Friedrich Cotta and Friedrich Arnold Brockhaus, are reconstructed. In the second part, the crucial role of translations and adaptations of political articles in two decisive media formats of the political discourse, the historical-political journals and the "Conversationslexikon" is examined. And finally in a third step, the specific significance of the reception of the Spanish revolution of the "trienio liberal" for the development of a constitutional vocabulary in Germany is sketched.}, language = {es} } @article{KoesslHechavarriaVossetal.2014, author = {Koessl, M. and Hechavarria, J. C. and Voss, C. and Macias, S. and Mora, E. C. and Vater, Marianne}, title = {Neural maps for target range in the auditory cortex of echolocating bats}, series = {Current opinion in neurobiology : reviews of all advances ; evaluation of key references ; comprehensive listing of papers}, volume = {24}, journal = {Current opinion in neurobiology : reviews of all advances ; evaluation of key references ; comprehensive listing of papers}, publisher = {Elsevier}, address = {London}, issn = {0959-4388}, doi = {10.1016/j.conb.2013.08.016}, pages = {68 -- 75}, year = {2014}, abstract = {Computational brain maps as opposed to maps of receptor surfaces strongly reflect functional neuronal design principles. In echolocating bats, computational maps are established that topographically represent the distance of objects. These target range maps are derived from the temporal delay between emitted call and returning echo and constitute a regular representation of time (chronotopy). Basic features of these maps are innate, and in different bat species the map size and precision varies. An inherent advantage of target range maps is the implementation of mechanisms for lateral inhibition and excitatory feedback. Both can help to focus target ranging depending on the actual echolocation situation. However, these maps are not absolutely necessary for bat echolocation since there are bat species without cortical target-distance maps, which use alternative ensemble computation mechanisms.}, language = {en} } @misc{BadalyanDierichStibaetal.2014, author = {Badalyan, Artavazd and Dierich, Marlen and Stiba, Konstanze and Schwuchow, Viola and Leimk{\"u}hler, Silke and Wollenberger, Ulla}, title = {Electrical wiring of the aldehyde oxidoreductase PaoABC with a polymer containing osmium redox centers}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {1082}, issn = {1866-8372}, doi = {10.25932/publishup-47507}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-475070}, pages = {21}, year = {2014}, abstract = {Biosensors for the detection of benzaldehyde and g-aminobutyric acid (GABA) are reported using aldehyde oxidoreductase PaoABC from Escherichia coli immobilized in a polymer containing bound low potential osmium redox complexes. The electrically connected enzyme already electrooxidizes benzaldehyde at potentials below -0.15 V (vs. Ag|AgCl, 1 M KCl). The pH-dependence of benzaldehyde oxidation can be strongly influenced by the ionic strength. The effect is similar with the soluble osmium redox complex and therefore indicates a clear electrostatic effect on the bioelectrocatalytic efficiency of PaoABC in the osmium containing redox polymer. At lower ionic strength, the pH-optimum is high and can be switched to low pH-values at high ionic strength. This offers biosensing at high and low pH-values. A "reagentless" biosensor has been formed with enzyme wired onto a screen-printed electrode in a flow cell device. The response time to addition of benzaldehyde is 30 s, and the measuring range is between 10-150 µM and the detection limit of 5 µM (signal to noise ratio 3:1) of benzaldehyde. The relative standard deviation in a series (n = 13) for 200 µM benzaldehyde is 1.9\%. For the biosensor, a response to succinic semialdehyde was also identified. Based on this response and the ability to work at high pH a biosensor for GABA is proposed by coimmobilizing GABA-aminotransferase (GABA-T) and PaoABC in the osmium containing redox polymer.}, language = {en} } @misc{EcksteinReinfandt2014, author = {Eckstein, Lars and Reinfandt, Christoph}, title = {Luhmann in the Contact Zone}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-85488}, pages = {107 -- 124}, year = {2014}, language = {de} } @article{AustinGroppeElsner2014, author = {Austin, Gina and Groppe, Karoline and Elsner, Birgit}, title = {The reciprocal relationship between executive function and theory of mind in middle childhood: a 1-year longitudinal perspective}, series = {Frontiers in psychology}, volume = {5}, journal = {Frontiers in psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2014.00655}, pages = {11}, year = {2014}, abstract = {There is robust evidence showing a link between executive function (EF) and theory of mind (ToM) in 3-to 5-year-olds. However, it is unclear whether this relationship extends to middle childhood. In addition, there has been much discussion about the nature of this relationship. Whereas some authors claim that ToM is needed for EF, others argue that ToM requires EF. To date, however, studies examining the longitudinal relationship between distinct sub components of EF [i.e., attention shifting, working memory (WM) updating, inhibition] and ToM in middle childhood are rare. The present study examined (1) the relationship between three EF subcomponents (attention shifting, WM updating, inhibition) and ToM in middle childhood, and (2) the longitudinal reciprocal relationships between the EF subcomponents and ToM across a 1-year period. EF and ToM measures were assessed experimentally in a sample of 1,657 children (aged 6-11 years) at time point one (t1) and 1 year later at time point two (t2). Results showed that the concurrent relationships between all three EF subcomponents and ToM pertained in middle childhood at t1 and t2, respectively, even when age, gender, and fluid intelligence were partialle dout. Moreover, cross-lagged structural equation modeling (again, controlling for age, gender, and fluid intelligence, as well as for the earlier levels of the target variables), revealed partial support for the view that early ToM predictslater EF, but stronger evidence for the assumption that early EF predictslater ToM. The latter was found for attention shifting and WM updating, but not for inhibition. This reveals the importance of studying the exact interplay of ToM and EF across childhood development, especially with regard to different EF subcomponents. Most likely, understanding others' mental states at different levels of perspective-taking requires specific EF subcomponents, suggesting developmental change in the relations between EF and ToM across childhood.}, language = {en} } @article{PrimusRitschelSigueenzaetal.2014, author = {Primus, Philipp-Alexander and Ritschel, Thomas and Sigueenza, Pilar Y. and Cauqui, Miguel Angel and Hernandez-Garrido, Juan Carlos and Kumke, Michael Uwe}, title = {High-resolution spectroscopy of europium-doped ceria as a tool to correlate structure and catalytic activity}, series = {The journal of physical chemistry : C, Nanomaterials and interfaces}, volume = {118}, journal = {The journal of physical chemistry : C, Nanomaterials and interfaces}, number = {40}, publisher = {American Chemical Society}, address = {Washington}, issn = {1932-7447}, doi = {10.1021/jp505467r}, pages = {23349 -- 23360}, year = {2014}, abstract = {Site-selective emission spectra of Eu3+-doped CeO2 nanoparticles up to the D-5(0) - F-7(5) transition were recorded under cryogenic conditions to identify the local structure around the Eu3+ dopants in ceria. It is found that pretreatment conditions are crucial for the redistribution of dopants from a broad variety of environments to six well-defined lattice sites. The influence of the dopant and the host structure on the catalytic activity was investigated. A relationship between structure and reactivity is discussed. It is shown that oxygen transport is most efficient in particles with a pronounced amorphous character.}, language = {en} } @article{DevosGraefField2014, author = {Devos, Damien P. and Gr{\"a}f, Ralph and Field, Mark C.}, title = {Evolution of the nucleus}, series = {Current opinion in cell biology : review articles, recommended reading, bibliography of the world literature}, volume = {28}, journal = {Current opinion in cell biology : review articles, recommended reading, bibliography of the world literature}, publisher = {Elsevier}, address = {London}, issn = {0955-0674}, doi = {10.1016/j.ceb.2014.01.004}, pages = {8 -- 15}, year = {2014}, abstract = {The nucleus represents a major evolutionary transition. As a consequence of separating translation from transcription many new functions arose, which likely contributed to the remarkable success of eukaryotic cells. Here we will consider what has recently emerged on the evolutionary histories of several key aspects of nuclear biology; the nuclear pore complex, the lamina, centrosomes and evidence for prokaryotic origins of relevant players.}, language = {en} } @article{Ifenthaler2014, author = {Ifenthaler, Dirk}, title = {Challenges of a Holistic Learning Analytics Project}, series = {E-Learning Symposium 2014 : Mobil und vernetzt - studieren im digitalen Zeitalter ; Potsdam, 14. November 2014}, journal = {E-Learning Symposium 2014 : Mobil und vernetzt - studieren im digitalen Zeitalter ; Potsdam, 14. November 2014}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, doi = {10.25932/publishup-44230}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-442303}, pages = {15 -- 28}, year = {2014}, abstract = {Recently, interest in collecting and mining large sets of educational data on student background and performance to conduct research on learning and instruction has developed as an area generally referred to as learning analytics. Higher education leaders are recognising the value of learning analytics for improving not only learning and teaching but also the entire educational arena. However, theoretical concepts and empirical evidence need to be generated within the fast evolving field of learning analytics. In this paper, we introduce a holistic learning analytics framework. Based on this framework, student, learning, and curriculum profiles have been developed which include relevant static and dynamic parameters for facilitating the learning analytics framework. Based on the theoretical model, an empirical study was conducted to empirically validate the parameters included in the student profile. The paper concludes with practical implications and issues for future research.}, language = {en} } @article{ZoernerKoehlmannBrandt2014, author = {Zoerner, Dietmar and K{\"o}hlmann, Wiebke and Brandt, Christopher}, title = {Mobiles spielebasiertes Lernen an historischen Lernorten}, series = {E-Learning Symposium 2014 : Mobil und vernetzt - studieren im digitalen Zeitalter ; Potsdam, 14. November 2014}, journal = {E-Learning Symposium 2014 : Mobil und vernetzt - studieren im digitalen Zeitalter ; Potsdam, 14. November 2014}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, doi = {10.25932/publishup-44235}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-442354}, pages = {53 -- 54}, year = {2014}, abstract = {Im Rahmen eines interdisziplin{\"a}ren studentischen Projekts wurde ein Framework f{\"u}r mobile pervasive Lernspiele entwickelt. Am Beispiel des historischen Lernortes Park Sanssouci wurde auf dieser Grundlage ein Lernspiel f{\"u}r Sch{\"u}lerinnen und Sch{\"u}ler implementiert. Die geplante Evaluation soll die Lernwirksamkeit von geobasierten mobilen Lernspielen messen. Dazu wird die Intensit{\"a}t des Flow-Erlebens mit einer ortsgebundenen alternativen Umsetzung verglichen.}, language = {de} } @book{OPUS4-55162, title = {Karlsruher Kommentar zum Gesetz {\"u}ber Ordnungswiedrigkeiten}, editor = {Senge, Lothar}, edition = {4., neu bearb.}, publisher = {Beck}, address = {M{\"u}nchen}, isbn = {978-3-406-66044-3}, pages = {2001}, year = {2014}, language = {de} } @article{PutraNeuberReichetzederetal.2014, author = {Putra, Sulistyo Emantoko Dwi and Neuber, Corinna and Reichetzeder, Christoph and Hocher, Berthold and Kleuser, Burkhard}, title = {Analysis of genomic DNA methylation levels in human placenta using liquid Chromatography-Electrospray ionization tandem mass spectrometry}, series = {Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry and pharmacology}, volume = {33}, journal = {Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry and pharmacology}, number = {4}, publisher = {Karger}, address = {Basel}, issn = {1015-8987}, doi = {10.1159/000358666}, pages = {945 -- 952}, year = {2014}, abstract = {Background: DNA-methylation is a common epigenetic tool which plays a crucial role in gene regulation and is essential for cell differentiation and embryonic development. The placenta is an important organ where gene activity can be regulated by epigenetic DNA modifications, including DNA methylation. This is of interest as, the placenta is the interface between the fetus and its environment, the mother. Exposure to environmental toxins and nutrition during pregnancy may alter DNA methylation of the placenta and subsequently placental function and as a result the phenotype of the offspring. The aim of this study was to develop a reliable method to quantify DNA methylation in large clinical studies. This will be a tool to analyze the degree of DNA methylation in the human placenta in relationship to clinical readouts. Methods: Liquid chromatography-electrospray ionization/multi-stage mass spectrometry (LC-ESI/MS/MS) technique was used for the quantification of the 5dmC/dG ratio in placentas from 248 healthy pregnancies. We were able to demonstrate that this method is a reliable and stable way to determine global placental DNA methylation in large clinical trials. Results/Conclusion: The degree of placental DNA methylation seen in our pilot study varies substantially from 2\% to 5\%. The clinical implications of this variation need to be demonstrated in adequately powered large studies.}, language = {en} } @inproceedings{ArltSchwiebsPfarretal.2014, author = {Arlt, Olga and Schwiebs, Anja and Pfarr, Kathrin and Ranglack, Annika and Bouzas, Ferreiros Nerea and Schreiber, Yannick and Neuber, Corinna and Kleuser, Burkhard and Pfeilschifter, Josef M. and Radeke, Heinfried H.}, title = {Dynamic interaction between sphingolipid enzymes, S1P and inflammatory cytokine regulation in dendritic cells}, series = {NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY}, volume = {387}, booktitle = {NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY}, publisher = {Springer}, address = {New York}, issn = {0028-1298}, pages = {S91 -- S91}, year = {2014}, language = {en} } @book{ApelojgFichten2014, author = {Apelojg, Benjamin and Fichten, Wolfgang}, title = {Experiment Unterricht}, series = {Sammelband}, journal = {Sammelband}, editor = {Apelojg, Benjamin and Fichten, Wolfgang}, publisher = {BIS-Verlag}, address = {Oldenburg}, isbn = {978-3-8142-2313-1}, pages = {115}, year = {2014}, abstract = {Forschungsberichte aus der Oldenburger Teamforschung und dem WAT-Begleitseminar zum Praxissemester der Universit{\"a}t Potsdam.}, language = {de} } @book{Andrae2014, author = {Andrae, Marianne}, title = {Internationales Familienrecht}, publisher = {Nomos}, address = {Baden-Baden}, isbn = {978-384-87052-1-4}, pages = {768 S.}, year = {2014}, language = {de} } @article{Risse2014, author = {Risse, Sarah}, title = {Effects of visual span on reading speed and parafoveal processing in eye movements during sentence reading}, series = {Journal of vision}, volume = {14}, journal = {Journal of vision}, number = {8}, publisher = {Association for Research in Vision and Opthalmology}, address = {Rockville}, issn = {1534-7362}, doi = {10.1167/14.8.11}, pages = {13}, year = {2014}, language = {en} } @misc{HuynenSuzukiOguraetal.2014, author = {Huynen, Leon and Suzuki, Takayuki and Ogura, Toshihiko and Watanabe, Yusuke and Millar, Craig D. and Hofreiter, Michael and Smith, Craig and Mirmoeini, Sara and Lambert, David M.}, title = {Reconstruction and in vivo analysis of the extinct tbx5 gene from ancient wingless moa (Aves: Dinornithiformes)}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {1117}, issn = {1866-8372}, doi = {10.25932/publishup-43159}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-431599}, pages = {10}, year = {2014}, abstract = {Background The forelimb-specific gene tbx5 is highly conserved and essential for the development of forelimbs in zebrafish, mice, and humans. Amongst birds, a single order, Dinornithiformes, comprising the extinct wingless moa of New Zealand, are unique in having no skeletal evidence of forelimb-like structures. Results To determine the sequence of tbx5 in moa, we used a range of PCR-based techniques on ancient DNA to retrieve all nine tbx5 exons and splice sites from the giant moa, Dinornis. Moa Tbx5 is identical to chicken Tbx5 in being able to activate the downstream promotors of fgf10 and ANF. In addition we show that missexpression of moa tbx5 in the hindlimb of chicken embryos results in the formation of forelimb features, suggesting that Tbx5 was fully functional in wingless moa. An alternatively spliced exon 1 for tbx5 that is expressed specifically in the forelimb region was shown to be almost identical between moa and ostrich, suggesting that, as well as being fully functional, tbx5 is likely to have been expressed normally in moa since divergence from their flighted ancestors, approximately 60 mya. Conclusions The results suggests that, as in mice, moa tbx5 is necessary for the induction of forelimbs, but is not sufficient for their outgrowth. Moa Tbx5 may have played an important role in the development of moa's remnant forelimb girdle, and may be required for the formation of this structure. Our results further show that genetic changes affecting genes other than tbx5 must be responsible for the complete loss of forelimbs in moa.}, language = {en} } @article{SchulzeAppelhansTierschetal.2014, author = {Schulze, Nicole and Appelhans, D. and Tiersch, Brigitte and Koetz, Joachim}, title = {Morphological transformation of vesicles into tubular structures by adding polyampholytes or dendritic glycopolymers}, series = {Colloids and surfaces : an international journal devoted to the principles and applications of colloid and interface science ; A, Physicochemical and engineering aspects}, volume = {457}, journal = {Colloids and surfaces : an international journal devoted to the principles and applications of colloid and interface science ; A, Physicochemical and engineering aspects}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0927-7757}, doi = {10.1016/j.colsurfa.2014.06.007}, pages = {326 -- 332}, year = {2014}, abstract = {For the first time tubulating properties of spherical dendritic glycopolymers and linear alternating polyampholytes against non-uniform negatively charged giant vesicles are proven by light microscopy and cryo-scanning electron microscopy study. Real time observation of the morphological transformation from giant vesicles to tubular structures, simulating morphogenesis in living cells, is given by using the cationic and H-bond active dendritic glycopolymer accompanied by reducing the size of the giant vesicles and the evidence of vesicle-vesicle interaction which was only postulated in a previous study. Similar morphogenesis of non-uniform giant vesicles into tubular network structure can be observed by using a polyampholyte in the stretched conformation at pH 9. Pearl necklace and tubular network structure formation are also observed by applying anionic vesicles of significant smaller dimensions with average size dimensions of 35 nm, after adding the polyampholyte at pH 9. However, the fitting accuracy between the functional groups along the backbone chain of the polyampholyte on one side and the vesicle surface on the other side is of high importance for the transformation process by using polyampholytes. The resulting tubular and network structures offer new fields of application as microfluidic transport channels or template phases for the shape controlled formation of nanoparticles. (C) 2014 Elsevier B.V. All rights reserved.}, language = {en} } @article{GroppeElsner2014, author = {Groppe, Karoline and Elsner, Birgit}, title = {Executive function and food approach behavior in middle childhood}, series = {Frontiers in psychology}, volume = {5}, journal = {Frontiers in psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2014.00447}, pages = {12}, year = {2014}, abstract = {Executive function (EF) has long been considered to be a unitary, domain-general cognitive ability. However, recent research suggests differentiating "hot" affective and "cool" cognitive aspects of EF. Yet, findings regarding this two-factor construct are still inconsistent. In particular, the development of this factor structure remains unclear and data on school-aged children is lacking. Furthermore, studies linking EF and overweight or obesity suggest that EF contributes to the regulation of eating behavior. So far, however, the links between EF and eating behavior have rarely been investigated in children and non-clinical populations. First, we examined whether EF can be divided into hot and cool factors or whether they actually correspond to a unitary construct in middle childhood. Second, we examined how hot and cool EF are associated with different eating styles that put children at risk of becoming overweight during development. Hot and cool EF were assessed experimentally in a non-clinical population of 1657 elementary-school children (aged 6-11 years). The "food approach" behavior was rated mainly via parent questionnaires. Findings indicate that hot EF is distinguishable from cool EF. However, only cool EF seems to represent a coherent functional entity, whereas hot EF does not seem to be a homogenous construct. This was true for a younger and an older subgroup of children. Furthermore, different EF components were correlated with eating styles, such as responsiveness to food, desire to drink, and restrained eating in girls but not in boys. This shows that lower levels of EF are not only seen in clinical populations of obese patients but are already associated with food approach styles in a normal population of elementary school-aged girls. Although the direction of effect still has to be clarified, results point to the possibility that EF constitutes a risk factor for eating styles contributing to the development of overweight in the long-term.}, language = {en} } @article{RofesBastiaanseMartinezFerreiro2014, author = {Rofes, Adria and Bastiaanse, Roelien and Martinez-Ferreiro, Silvia}, title = {Conditional and future tense impairment in non-fluent aphasia}, series = {Aphasiology : an international, interdisciplinary journal}, volume = {28}, journal = {Aphasiology : an international, interdisciplinary journal}, number = {1}, publisher = {Routledge, Taylor \& Francis Group}, address = {Abingdon}, issn = {0268-7038}, doi = {10.1080/02687038.2013.850650}, pages = {99 -- 115}, year = {2014}, abstract = {Background: Morphological errors of tense and agreement are salient in agrammatic aphasia. The PADILIH predicts impairments in discourse linking that translate to greater difficulties in referring to a past event time than to a future or a present event time. In Catalan, the Periphrastic conditional tense (e.g., if the man had had time, he would have...) refers to the past and the Simple conditional tense refers to the future (e.g., if the man had time, he would...). These two tenses refer to an event that may happen (irrealis).Aims: We fill in the gap of the conditional tense and provide further data to study contrasts in verb inflection for time reference. We predict that verb forms that refer to an irrealis past event (Periphrastic conditional) are more impaired than forms that refer to an irrealis future event (Simple conditional and Future). We also predict that there are no differences between verb forms that refer to an irrealis future event (Simple conditional and Future). We also assessed whether problems in time reference extend to individuals with non-fluent aphasia that are not typical agrammatic Broca aphasia.Methods \& Procedures: A sentence completion task that included 60 sentences (20 per type) of equal length in a Conditional structure (if-sentences) was designed. We tested three sentence types: Periphrastic conditional, Simple conditional and Future. The task was administered to nine participants with non-fluent aphasia and nine age-matched non-brain-damaged participants.Outcomes \& Results: The Control group scored at ceiling on the three sentence types. Participants with non-fluent aphasia were most impaired in the production of the Periphrastic conditional as compared with the Simple conditional and the Future.Conclusions: When irrealis event times are compared, past events are more impaired than future events. These results can be explained by a deficit in time reference as predicted by the PADILIH. Our data reveal that the predictions of the PADILIH also hold for non-fluent speakers who have been diagnosed with Transcortical motor aphasia.}, language = {en} } @article{NeuschaeferRubeLieskeKunaetal.2014, author = {Neuschaefer-Rube, Frank and Lieske, Stefanie and Kuna, Manuela and Henkel, Janin and Perry, Rachel J. and Erion, Derek M. and Pesta, Dominik and Willmes, Diana M. and Brachs, Sebastian and von Loeffelholz, Christian and Tolkachov, Alexander and Schupp, Michael and Pathe-Neuschaefer-Rube, Andrea and Pfeiffer, Andreas F. H. and Shulman, Gerald I. and P{\"u}schel, Gerhard Paul and Birkenfeld, Andreas L.}, title = {The mammalian INDY homolog is induced by CREB in a rat model of type 2 diabetes}, series = {Diabetes : a journal of the American Diabetes Association}, volume = {63}, journal = {Diabetes : a journal of the American Diabetes Association}, number = {3}, publisher = {American Diabetes Association}, address = {Alexandria}, issn = {0012-1797}, pages = {1048 -- 1057}, year = {2014}, language = {en} } @inproceedings{HenkelCamargoSchanzeetal.2014, author = {Henkel, Janine and Camargo, Rodolfo Gonzalez and Schanze, Nancy and P{\"u}schel, Gerhard Paul}, title = {The vicious circle of prostaglandin- and cytokine-dependent hepatic insulin resistance: a key role of prostaglandin E2}, series = {Diabetologia : journal of the European Association for the Study of Diabetes (EASD)}, volume = {57}, booktitle = {Diabetologia : journal of the European Association for the Study of Diabetes (EASD)}, publisher = {Springer}, address = {New York}, issn = {0012-186X}, pages = {S241 -- S242}, year = {2014}, language = {en} } @article{IvanovBeninaPetrovetal.2014, author = {Ivanov, Ivan and Benina, Maria and Petrov, Veselin and Gechev, Tsanko S. and Toneva, Valentina}, title = {Metabolic responses of gloxinia perennis to dehydration and rehydration}, series = {COMPTES RENDUS DE L ACADEMIE BULGARE DES SCIENCES}, volume = {67}, journal = {COMPTES RENDUS DE L ACADEMIE BULGARE DES SCIENCES}, number = {12}, publisher = {Publ. House of the Bulgarian Acad. of Sciences}, address = {Sofia}, issn = {1310-1331}, pages = {1657 -- 1662}, year = {2014}, abstract = {Gloxinia perennis is a species from the family Gesneriaceae with little known physiology, particularly in respect to responses to dehydration. G. perennis survived water deprivation for a month and then quickly recovered upon rehydration. The slow loss of water was in contrast with the quick dehydration of other Gesnerian species - Boea hygrometrica, Ramonda serbica, and Haber lea rhodopensis. Furthermore, a significant difference between older and younger leaves of G. perennis was observed. While the relative water content in the early stages of water deprivation was reduced to 65\% in the old leaves, it was not or slightly reduced in the young ones, implying a mechanism that protects specifically the younger leaves from dehydration. Water deprivation induced accumulation of gama-aminobutyric acid and sugars like sucrose and raffinose, but decreased the levels of amino acids such as glycine, leucine, and isoleucine. The levels of these amino acids recovered after rehydration and in some cases like glycine and isoleucine were even higher in rehydrated leaves compared with unstressed controls. We conclude that G.perennis can survive prolonged drought stress but its responses to dehydration are different from the resurrection species from Gesneriaceae. All this makes G. perennis a good model that can be used for comparative genomics and metabolomics of Gesneriads exposed to desiccation.}, language = {en} } @misc{AdaniForgiariniGuastietal.2014, author = {Adani, Flavia and Forgiarini, Matteo and Guasti, Maria Teresa and Van der Lely, Heather K. J.}, title = {Number dissimilarities facilitate the comprehension of relative clauses in children with (Grammatical) Specific Language Impairment}, series = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, number = {525}, issn = {1866-8364}, doi = {10.25932/publishup-41545}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-415453}, pages = {811 -- 841}, year = {2014}, abstract = {This study investigates whether number dissimilarities on subject and object DPs facilitate the comprehension of subject-and object-extracted centre-embedded relative clauses in children with Grammatical Specific Language Impairment (G-SLI). We compared the performance of a group of English-speaking children with G-SLI (mean age: 12; 11) with that of two groups of younger typically developing (TD) children, matched on grammar and receptive vocabulary, respectively. All groups were more accurate on subject-extracted relative clauses than object-extracted ones and, crucially, they all showed greater accuracy for sentences with dissimilar number features (i.e., one singular, one plural) on the head noun and the embedded DP. These findings are interpreted in the light of current psycholinguistic models of sentence comprehension in TD children and provide further insight into the linguistic nature of G-SLI.}, language = {en} } @article{Hassler2014, author = {Haßler, Gerda}, title = {Evidentiality and the expression of speaker's stance in Romance languages and German}, series = {Discourse Studies : an interdisciplinary journal for the study of text and talk}, volume = {17}, journal = {Discourse Studies : an interdisciplinary journal for the study of text and talk}, number = {2}, publisher = {Sage Publications}, address = {London}, issn = {1461-4456}, doi = {10.1177/1461445614564522}, pages = {182 -- 209}, year = {2014}, abstract = {In recent years, the category of evidentiality has also come into use for the description of Romance languages and of German. This has been contingent on a change in its interpretation from a typological category to a semantic-pragmatic category, which allows an application to languages lacking specialised morphemes for the expression of evidentiality. We consider evidentiality to be a structural dimension of grammar, the values of which are expressed by types of constructions that code the source of information which a speaker imparts. If we look at the situation in Romance languages and in German, drawing a boundary between epistemic modality and evidentiality presents problems that are difficult to solve. Adding markers of the source of the speaker's knowledge often limits the degree of responsibility of the speaker for the content of the utterance. Evidential adverbs are a frequently used means of marking the source of the speaker's knowledge. The evidential meaning is generalised to marking any source of knowledge, what can be regarded as a result of a process of pragmaticalisation. The use of certain means which also carry out evidential markings can even contribute to the blurring of the different kinds of evidentiality. German also has modal verbs which in conjunction with the perfect tense of the verb have a predominantly evidential use (sollen and wollen). But even here the evidential marking is not without influence on the modality of the utterance. The Romance languages, however, do not have such specialised verbs for expressing evidentiality in certain contexts. To do this, they mark evidentiality - often context bound - by verb forms such as the conditional and the imperfect tense. This article shall contrast the different architectures used in expressing evidentiality in German and in the Romance languages.}, language = {en} } @incollection{Hassler2014, author = {Haßler, Gerda}, title = {La traducci{\´o}n de la obra del Tratado elemental de Qu{\´i}mica de Lavoisier y el di{\´a}logo entre la filosof{\´i}a y la ciencia}, series = {La ciencia como di{\´a}logo entre teor{\´i}as, textos y lenguas}, booktitle = {La ciencia como di{\´a}logo entre teor{\´i}as, textos y lenguas}, publisher = {Frank \& Timme}, address = {Berlin}, isbn = {978-3-7329-0130-2}, publisher = {Universit{\"a}t Potsdam}, pages = {109 -- 125}, year = {2014}, abstract = {The Trait{\´e} {\´e}l{\´e}mentaire de chimie (1789) is considered to be the first modern chemistry text. After the author, Antoine Laurent de Lavoisier (1743 - 1794), had defined the element as a pure substance that cannot be broken down into simpler entities, he introduced the method of chemical terminology in which he represented the elements in a more practical way as symbols. The translator Juan Manuel Mun{\´a}rriz followed the author in his conviction that it is impossible to separate the nomenclature from science for three reasons: the scientific facts, the ideas representing them, and the words that express the ideas.}, language = {es} } @unpublished{SultanovKalyakinTarkhanov2014, author = {Sultanov, Oskar and Kalyakin, Leonid and Tarkhanov, Nikolai Nikolaevich}, title = {Elliptic perturbations of dynamical systems with a proper node}, volume = {3}, number = {4}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {2193-6943}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70460}, pages = {12}, year = {2014}, abstract = {The paper is devoted to asymptotic analysis of the Dirichlet problem for a second order partial differential equation containing a small parameter multiplying the highest order derivatives. It corresponds to a small perturbation of a dynamical system having a stationary solution in the domain. We focus on the case where the trajectories of the system go into the domain and the stationary solution is a proper node.}, language = {en} } @misc{MorgnerLecointreCharbonniereetal.2014, author = {Morgner, Frank and Lecointre, Alexandre and Charbonni{\`e}re, Loic J. and L{\"o}hmannsr{\"o}ben, Hans-Gerd}, title = {Detecting free hemoglobin in blood plasma and serum with luminescent terbium complexes}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-99485}, pages = {6}, year = {2014}, abstract = {Hemolysis, the rupturing of red blood cells, can result from numerous medical conditions (in vivo) or occur after collecting blood specimen or extracting plasma and serum out of whole blood (in vitro). In clinical laboratory practice, hemolysis can be a serious problem due to its potential to bias detection of various analytes or biomarkers. Here we present the first ''mix-and-measure'' method to assess the degree of hemolysis in biosamples using luminescence spectroscopy. Luminescent terbium complexes (LTC) were studied in the presence of free hemoglobin (Hb) as indicators for hemolysis in TRIS-buffer, and in fresh human plasma with absorption, excitation and emission measurements. Our findings indicate dynamic as well as resonance energy transfer (FRET) between the LTC and the porphyrin ligand of hemoglobin. This transfer leads to a decrease in luminescence intensity and decay time even at nanomolar hemoglobin concentrations either in buffer or plasma. Luminescent terbium complexes are very sensitive to free hemoglobin in buffer and blood plasma. Due to the instant change in luminescence properties of the LTC in presence of Hb it is possible to access the concentration of hemoglobin via spectroscopic methods without incubation time or further treatment of the sample thus enabling a rapid and sensitive detection of hemolysis in clinical diagnostics.}, language = {en} } @misc{Laschewsky2014, author = {Laschewsky, Andr{\´e}}, title = {Structures and synthesis of zwitterionic polymers}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {1043}, issn = {1866-8372}, doi = {10.25932/publishup-47616}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-476167}, pages = {60}, year = {2014}, abstract = {The structures and synthesis of polyzwitterions ("polybetaines") are reviewed, emphasizing the literature of the past decade. Particular attention is given to the general challenges faced, and to successful strategies to obtain polymers with a true balance of permanent cationic and anionic groups, thus resulting in an overall zero charge. Also, the progress due to applying new methodologies from general polymer synthesis, such as controlled polymerization methods or the use of "click" chemical reactions is presented. Furthermore, the emerging topic of responsive ("smart") polyzwitterions is addressed. The considerations and critical discussions are illustrated by typical examples.}, language = {en} } @misc{YarmanScheller2014, author = {Yarman, Aysu and Scheller, Frieder W.}, title = {The first electrochemical MIP sensor for tamoxifen}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {1046}, issn = {1866-8372}, doi = {10.25932/publishup-47617}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-476173}, pages = {10}, year = {2014}, abstract = {We present an electrochemical MIP sensor for tamoxifen (TAM)-a nonsteroidal anti-estrogen-which is based on the electropolymerisation of an O-phenylenediamine. resorcinol mixture directly on the electrode surface in the presence of the template molecule. Up to now only. bulk. MIPs for TAM have been described in literature, which are applied for separation in chromatography columns. Electro-polymerisation of the monomers in the presence of TAM generated a film which completely suppressed the reduction of ferricyanide. Removal of the template gave a markedly increased ferricyanide signal, which was again suppressed after rebinding as expected for filling of the cavities by target binding. The decrease of the ferricyanide peak of the MIP electrode depended linearly on the TAM concentration between 1 and 100 nM. The TAM-imprinted electrode showed a 2.3 times higher recognition of the template molecule itself as compared to its metabolite 4-hydroxytamoxifen and no cross-reactivity with the anticancer drug doxorubucin was found. Measurements at + 1.1 V caused a fouling of the electrode surface, whilst pretreatment of TAM with peroxide in presence of HRP generated an oxidation product which was reducible at 0 mV, thus circumventing the polymer formation and electrochemical interferences.}, language = {en} } @misc{Hildebrandt2014, author = {Hildebrandt, Dieter}, title = {A software reference architecture for service-oriented 3D geovisualization systems}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {1131}, issn = {1866-8372}, doi = {10.25932/publishup-47583}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-475831}, pages = {48}, year = {2014}, abstract = {Modern 3D geovisualization systems (3DGeoVSs) are complex and evolving systems that are required to be adaptable and leverage distributed resources, including massive geodata. This article focuses on 3DGeoVSs built based on the principles of service-oriented architectures, standards and image-based representations (SSI) to address practically relevant challenges and potentials. Such systems facilitate resource sharing and agile and efficient system construction and change in an interoperable manner, while exploiting images as efficient, decoupled and interoperable representations. The software architecture of a 3DGeoVS and its underlying visualization model have strong effects on the system's quality attributes and support various system life cycle activities. This article contributes a software reference architecture (SRA) for 3DGeoVSs based on SSI that can be used to design, describe and analyze concrete software architectures with the intended primary benefit of an increase in effectiveness and efficiency in such activities. The SRA integrates existing, proven technology and novel contributions in a unique manner. As the foundation for the SRA, we propose the generalized visualization pipeline model that generalizes and overcomes expressiveness limitations of the prevalent visualization pipeline model. To facilitate exploiting image-based representations (IReps), the SRA integrates approaches for the representation, provisioning and styling of and interaction with IReps. Five applications of the SRA provide proofs of concept for the general applicability and utility of the SRA. A qualitative evaluation indicates the overall suitability of the SRA, its applications and the general approach of building 3DGeoVSs based on SSI.}, language = {en} } @misc{GiladiMayRistowetal.2014, author = {Giladi, Itamar and May, Felix and Ristow, Michael and Jeltsch, Florian and Ziv, Yaron}, title = {Scale-dependent species-area and species-isolation relationships: a review and a test study from a fragmented semi-arid agro-ecosystem}, series = {Journal of biogeography}, volume = {41}, journal = {Journal of biogeography}, number = {6}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0305-0270}, doi = {10.1111/jbi.12299}, pages = {1055 -- 1069}, year = {2014}, abstract = {Aim Patterns that relate species richness with fragment area (the species-area relationship, SAR) and with isolation (the species-isolation relationship, SIR) are well documented. However, those that relate species density - the number of species within a standardized area - with fragment area (D-SAR) or isolation (D-SIR) have not been sufficiently explored, despite the potential for such an analysis to disentangle the underlying mechanisms of SARs and SIRs. Previous spatial theory predicts that a significant D-SAR or D-SIR is unlikely to emerge in taxa with high dispersal limitation, such as plants. Furthermore, a recent model predicts that the detection and the significance of D-SARs or D-SIRs may decrease with grain size. We combined a literature review with grain size-dependent sampling in a fragmented landscape to evaluate the prevalence and grain size-dependent nature of D-SARs and D-SIRs in plants. Location Worldwide (review) and a semi-arid agro-ecosystem in Israel (case study). Methods We combined an extensive literature review of 31 D-SAR studies of plants in fragmented landscapes with an empirical study in which we analysed grain size-dependent D-SARs and D-SIRs using a grain size-dependent hierarchical sampling of species density and species richness in a fragmented, semi-arid agro-ecosystem. Results We found that significantly increasing D-SARs are rare in plant studies. Furthermore, we found that the detection of a significant D-SAR is often possible only after the data have been stratified by species, habitat or landscape characteristics. The results from our case study indicated that the significance and the slopes of both D-SARs and D-SIRs increase as grain size decreases. Main conclusions These results call for a careful consideration of scale while analysing and interpreting the responses of species richness and species density to fragmentation. Our results suggest that grain size-dependent analyses of D-SARs and D-SIRs may help to disentangle the mechanisms that generate SARs and SIRs and may enable early detection of the effects of fragmentation on plant biodiversity.}, language = {en} } @unpublished{ConfortiLeonardMurretal.2014, author = {Conforti, Giovanni and L{\´e}onard, Christian and Murr, R{\"u}diger and Roelly, Sylvie}, title = {Bridges of Markov counting processes : reciprocal classes and duality formulas}, volume = {3}, number = {9}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {2193-6943}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71855}, pages = {12}, year = {2014}, abstract = {Processes having the same bridges are said to belong to the same reciprocal class. In this article we analyze reciprocal classes of Markov counting processes by identifying their reciprocal invariants and we characterize them as the set of counting processes satisfying some duality formula.}, language = {en} } @article{Guenther2014, author = {G{\"u}nther, Oliver}, title = {Big Data: What is it? And what does it mean for science, economy and society?}, series = {Informatik-Spektrum}, volume = {37}, journal = {Informatik-Spektrum}, number = {2}, publisher = {Springer Verlag}, address = {Heidelberg}, issn = {0170-6012}, doi = {10.1007/s00287-014-0783-7}, pages = {85 -- 86}, year = {2014}, language = {en} } @misc{BrennerKnuettgenTjimbaweetal.2014, author = {Brenner, Ulrich and Kn{\"u}ttgen, Anno and Tjimbawe, Brigitte and Krauss, Sandro and Ballerst{\"a}dt, Moritz and Jenny, Kr{\"u}ger and Wolter, Thomas and Kolbuch, Sandy and Puschmann, Matthias}, title = {Portal alumni}, series = {Das Ehemaligen-Magazin der Universit{\"a}t Potsdam}, journal = {Das Ehemaligen-Magazin der Universit{\"a}t Potsdam}, number = {11}, organization = {Stabsstelle Studierendenmarketing/Alumniprogramm Im Auftrag der Pr{\"a}sidentin der Universit{\"a}t Potsdam}, issn = {1613-2343}, doi = {10.25932/publishup-44527}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-445274}, pages = {52}, year = {2014}, abstract = {Die Beliebtheit von Medienberufen ist ungebrochen. Das zeigt sich unter anderem an der Zahl der Studieninteressierten. So haben sich allein in diesem Jahr mehr als 1 500 junge Leute auf einen der 44 Pl{\"a}tze f{\"u}r den Studiengang Medienwissenschaft an der Universit{\"a}t Potsdam beworben. Nach ihrem erfolgreichen Abschluss allerdings konkurrieren die Absolventen am Arbeitsmarkt mit Tausenden Abg{\"a}ngern anderer Hochschulen aus Film-, Medien- und Kommunikationsstudieng{\"a}ngen. Das sind allein in der Region Berlin-Brandenburg j{\"a}hrlich etwa 1 500. Doch nach jahrzehntelangem Boom der Medienbranche hat sich der Arbeitsmarkt im vergangenen Jahrzehnt drastisch ver{\"a}ndert. Konjunkturkrise, Kursr{\"u}ckg{\"a}nge und r{\"u}ckl{\"a}ufige Werbeinvestitionen schw{\"a}chten die Medien deutlich. Es folgten daraus schlechte Gewinnergebnisse, Einsparungen und Personalreduzierung, insbesondere bei den Printmedien. Die Insolvenz der Frankfurter Rundschau oder die Einstellung der Financial Times Deutschland sind nur zwei eklatante Beispiele. Auf der anderen Seite boomt der dynamische Online-Markt aufgrund des ver{\"a}nderten Nutzerverhaltens insbesondere der jungen Generation, die ihre Informationen zunehmend aus Internet, Apps und sozialen Netzwerken gewinnen. Die Berufsaussichten f{\"u}r all Jene, die „Irgendwas mit Medien" studieren wollen sind zwar aufgrund des Arbeitsmarktes schwieriger geworden, sie sind aber dennoch vielf{\"a}ltig. Guter Journalismus wird weiterhin ben{\"o}tigt und auch {\"O}ffentlichkeitsarbeiter sind gefragt. Dar{\"u}ber hinaus stehen Absolventen der Kommunikationswissenschaften die T{\"u}ren in die Medienplanung oder in der Markt- und Meinungsforschung offen. Und nicht zuletzt sind Experten in der Online-Branche gefragt. Portal alumni hat sich in diesem Jahr daf{\"u}r interessiert, welche Karrierewege Absolventen der der Universit{\"a}t Potsdam in Medienberufen bisher gegangen sind. Dabei zeigt sich, dass auch hier die Wege selten linear verlaufen und berufliche Erfolge sich keineswegs leicht einstellten.}, language = {de} } @article{VoigtSturzbecher2014, author = {Voigt, Jana and Sturzbecher, Dietmar}, title = {Entwicklung von Gewalt und Rechtsextremismus bei brandenburgische Jugendlichen und Folgerungen f{\"u}r eine nachhaltige Kriminalpr{\"a}vention}, series = {Nachhaltige Pr{\"a}vention von Kriminalit{\"a}t, Gewalt und Rechtsextremismus : Beitr{\"a}ge aus Wissenschaft und Praxis}, journal = {Nachhaltige Pr{\"a}vention von Kriminalit{\"a}t, Gewalt und Rechtsextremismus : Beitr{\"a}ge aus Wissenschaft und Praxis}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-71199}, pages = {161 -- 181}, year = {2014}, abstract = {1. Ausgangslage 2. Gewalt 2.1 Begriffsdefinition 2.2 Aktuelle Trends 2.3 Analysen zu den Ursachen von Gewalt 3. Rechtsextremismus 3.1 Begriffsdefinition 3.2 Aktuelle Trends 3.3 Analysen zu den Ursachen von Rechtsextremismus 4. Ankn{\"u}pfungspunkte f{\"u}r die Kriminalpr{\"a}vention Literatur}, language = {de} } @misc{WangZoellerHainzl2014, author = {Wang, Lifeng and Z{\"o}ller, Gert and Hainzl, Sebastian}, title = {Joint determination of slip and stress drop in a Bayesian inversion approach:}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, number = {888}, issn = {1866-8372}, doi = {10.25932/publishup-43551}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-435511}, pages = {375 -- 388}, year = {2014}, abstract = {Stress drop is a key factor in earthquake mechanics and engineering seismology. However, stress drop calculations based on fault slip can be significantly biased, particularly due to subjectively determined smoothing conditions in the traditional least-square slip inversion. In this study, we introduce a mechanically constrained Bayesian approach to simultaneously invert for fault slip and stress drop based on geodetic measurements. A Gaussian distribution for stress drop is implemented in the inversion as a prior. We have done several synthetic tests to evaluate the stability and reliability of the inversion approach, considering different fault discretization, fault geometries, utilized datasets, and variability of the slip direction, respectively. We finally apply the approach to the 2010 M8.8 Maule earthquake and invert for the coseismic slip and stress drop simultaneously. Two fault geometries from the literature are tested. Our results indicate that the derived slip models based on both fault geometries are similar, showing major slip north of the hypocenter and relatively weak slip in the south, as indicated in the slip models of other studies. The derived mean stress drop is 5-6 MPa, which is close to the stress drop of similar to 7 MPa that was independently determined according to force balance in this region Luttrell et al. (J Geophys Res, 2011). These findings indicate that stress drop values can be consistently extracted from geodetic data.}, language = {en} } @misc{Wallenta2014, author = {Wallenta, Daniel}, title = {A Lefschetz fixed point formula for elliptic quasicomplexes}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, number = {885}, issn = {1866-8372}, doi = {10.25932/publishup-43547}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-435471}, pages = {577 -- 587}, year = {2014}, abstract = {In a recent paper, the Lefschetz number for endomorphisms (modulo trace class operators) of sequences of trace class curvature was introduced. We show that this is a well defined, canonical extension of the classical Lefschetz number and establish the homotopy invariance of this number. Moreover, we apply the results to show that the Lefschetz fixed point formula holds for geometric quasiendomorphisms of elliptic quasicomplexes.}, language = {en} } @article{HemmeVeyelMuehlhausetal.2014, author = {Hemme, Dorothea and Veyel, Daniel and Muehlhaus, Timo and Sommer, Frederik and Jueppner, Jessica and Unger, Ann-Katrin and Sandmann, Michael and Fehrle, Ines and Schoenfelder, Stephanie and Steup, Martin and Geimer, Stefan and Kopka, Joachim and Giavalisco, Patrick and Schroda, Michael}, title = {Systems-wide analysis of acclimation responses to long-term heat stress and recovery in the photosynthetic model organism Chlamydomonas reinhardtii}, series = {The plant cell}, volume = {26}, journal = {The plant cell}, number = {11}, publisher = {American Society of Plant Physiologists}, address = {Rockville}, issn = {1040-4651}, doi = {10.1105/tpc.114.130997}, pages = {4270 -- 4297}, year = {2014}, abstract = {We applied a top-down systems biology approach to understand how Chlamydomonas reinhardtii acclimates to long-term heat stress (HS) and recovers from it. For this, we shifted cells from 25 to 42 degrees C for 24 h and back to 25 degrees C for >= 8 h and monitored abundances of 1856 proteins/protein groups, 99 polar and 185 lipophilic metabolites, and cytological and photosynthesis parameters. Our data indicate that acclimation of Chlamydomonas to long-term HS consists of a temporally ordered, orchestrated implementation of response elements at various system levels. These comprise (1) cell cycle arrest; (2) catabolism of larger molecules to generate compounds with roles in stress protection; (3) accumulation of molecular chaperones to restore protein homeostasis together with compatible solutes; (4) redirection of photosynthetic energy and reducing power from the Calvin cycle to the de novo synthesis of saturated fatty acids to replace polyunsaturated ones in membrane lipids, which are deposited in lipid bodies; and (5) when sinks for photosynthetic energy and reducing power are depleted, resumption of Calvin cycle activity associated with increased photorespiration, accumulation of reactive oxygen species scavengers, and throttling of linear electron flow by antenna uncoupling. During recovery from HS, cells appear to focus on processes allowing rapid resumption of growth rather than restoring pre-HS conditions.}, language = {en} }