@article{HundertmarkDimovaLengefeldetal.2011, author = {Hundertmark, Michaela and Dimova, Rumiana and Lengefeld, Jan and Seckler, Robert and Hincha, Dirk K.}, title = {The intrinsically disordered late embryogenesis abundant protein LEA18 from Arabidopsis thaliana modulates membrane stability through binding and folding}, series = {Biochimica et biophysica acta : Biomembranes}, volume = {1808}, journal = {Biochimica et biophysica acta : Biomembranes}, number = {1}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0005-2736}, doi = {10.1016/j.bbamem.2010.09.010}, pages = {446 -- 453}, year = {2011}, abstract = {Intrinsically disordered proteins (IDPs) constitute a substantial part of cellular proteomes. late embryogenesis abundant (LEA) proteins are mostly predicted to be IDPs associated with dehydration tolerance in many plant, animal and bacterial species. Their functions, however, are largely unexplored and also their structure and interactions with potential target molecules have only recently been experimentally investigated in a small number of proteins. Here, we report on the structure and interactions with membranes of the Pfam LEA_1 protein LEA18 from the higher plant Arabidopsis thaliana. This functionally uncharacterized positively charged protein specifically aggregated and destabilized negatively charged liposomes. Isothermal titration calorimetry showed binding of the protein to both charged and uncharged membranes. LEA18 alone was largely unstructured in solution. While uncharged membranes had no influence on the secondary structure of LEA18, the protein partially folded into beta-sheet structure in the presence of negatively charged liposomes. These data suggest that LEA18 does not function as a membrane stabilizing protein, as suggested for other LEA proteins. Instead, a possible function of LEA18 could be the composition-dependent modulation of membrane stability, e.g., during signaling or vesicle-mediated transport.}, language = {en} } @article{SchenkHamiltonJohnsonetal.2011, author = {Schenk, Paul and Hamilton, Douglas P. and Johnson, Robert E. and McKinnon, William B. and Paranicas, Chris and Schmidt, J{\"u}rgen and Showalter, Mark R.}, title = {Plasma, plumes and rings saturn system dynamics as recorded in global color patterns on its midsize icy satellites}, series = {Icarus : international journal of solar system studies}, volume = {211}, journal = {Icarus : international journal of solar system studies}, number = {1}, publisher = {Elsevier}, address = {San Diego}, issn = {0019-1035}, doi = {10.1016/j.icarus.2010.08.016}, pages = {740 -- 757}, year = {2011}, abstract = {New global maps of the five inner midsize icy saturnian satellites, Mimas, Enceladus, Tethys, Dione, and Rhea, have been constructed in three colors (UV, Green and near-IR) at resolutions of 1 km/pixel. The maps reveal prominent global patterns common to several of these satellites but also three major color features unique to specific satellites or satellite subgroups. The most common features among the group are first-order global asymmetries in color properties. This pattern, expressed on Tethys, Dione and Rhea, takes the form of a similar to 1.4-1.8 times enhancement in redness (expressed as IR/UV ratio) of the surface at the center of the trailing hemisphere of motion, and a similar though significantly weaker IR/UV enhancement at the center of the leading hemisphere. The peak in redness on the trailing hemisphere also corresponds to a known decrease in albedo. These double hemispheric asymmetries are attributable to plasma and E-ring grain bombardment on the trailing and leading hemispheres, respectively, for the outer three satellites Tethys, Dione and Rhea, whereas as E-ring bombardment may be focused on the trailing hemisphere of Mimas due to its orbital location interior to Enceladus. The maps also reveal three major deviations from these basic global patterns. We observe the previously known dark bluish leading hemisphere equatorial band on Tethys but have also discovered a similar band on Mimas. Similar in shape, both features match the surface patterns expected for irradiation of the surface by incident MeV electrons that drift in a direction opposite to the plasma flow. The global asymmetry on Enceladus is offset similar to 40 degrees to the west compared to the other satellites. We do not consider Enceladus in detail here, but the global distribution of bluish material can be shown to match the deposition pattern predicted for plume fallback onto the surface (Kempf, S., Beckmann, U., Schmidt, S. [2010]. Icarus 206, 446-457. doi:10.1016/j.icarus.2009.09.016). E-ring deposition on Enceladus thus appears to mask or prevent the formation of the lenses and hemispheric asymmetries we see on the other satellites. Finally, we observe a chain of discrete bluish splotches along the equator of Rhea. Unlike the equatorial bands of Tethys and Mimas, these splotches form a very narrow great circle <= 10-km wide (north-to-south) and appear to be related to surface disruption, exposing fresh, bluish ice on older crater rims. This feature is unique to Rhea and may have formed by impact onto its surface of orbiting material.}, language = {en} } @article{KoenigGoldenbergKulikovskaetal.2011, author = {Koenig, Tobias and Goldenberg, Leonid M. and Kulikovska, Olga and Kulikovsky, Lazar and Stumpe, Joachim and Santer, Svetlana}, title = {Reversible structuring of photosensitive polymer films by surface plasmon near field radiation}, series = {Soft matter}, volume = {7}, journal = {Soft matter}, number = {9}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1744-683X}, doi = {10.1039/c0sm01164a}, pages = {4174 -- 4178}, year = {2011}, abstract = {We report on the fabrication and characterisation of a novel type of hybrid azo-modified photosensitive polymer film with a nanoscale metallic structuring integrated into the substrate. The metal structures permit to generate surface plasmon near fields when irradiated by UV-light from the rear without directly illuminating the polymer. This allows establishment of a localized, complex-shape intensity distribution at sub-wavelength resolution with a corresponding impact on the photosensitive polymer. The possibilities of exploiting this setup are manifold. We find that just by using the change of polarization of the incident light as means of control, the topography can be driven to change between various patterns reversibly. These results are confirmed by numerical simulations and compared with in situ recorded topography changes.}, language = {en} } @article{KolloscheStoyanovLaflammeetal.2011, author = {Kollosche, Matthias and Stoyanov, Hristiyan and Laflamme, Simon and Kofod, Guggi}, title = {Strongly enhanced sensitivity in elastic capacitive strain sensors}, series = {Journal of materials chemistry}, volume = {21}, journal = {Journal of materials chemistry}, number = {23}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {0959-9428}, doi = {10.1039/c0jm03786a}, pages = {8292 -- 8294}, year = {2011}, abstract = {Strain sensors based on dielectric elastomer capacitors function by the direct coupling of mechanical deformations with the capacitance. The coupling can be improved by enhancing the relative permittivity of the dielectric elastomer. Here, this is carried out through the grafting of conducting polymer (poly-aniline) to the elastomer backbone, leading to molecular composites. An enhancement in capacitance response of 46 times is observed. This could help to extend the possible range of miniaturization towards even smaller device features.}, language = {en} } @article{SeissSpahn2011, author = {Seiss, Martin and Spahn, Frank}, title = {Hydrodynamics of saturn's dense rings}, series = {Mathematical modelling of natural phenomena}, volume = {6}, journal = {Mathematical modelling of natural phenomena}, number = {4}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {0973-5348}, doi = {10.1051/mmnp/20116409}, pages = {191 -- 218}, year = {2011}, abstract = {The space missions Voyager and Cassini together with earthbound observations revealed a wealth of structures in Saturn's rings. There are, for example, waves being excited at ring positions which are in orbital resonance with Saturn's moons. Other structures can be assigned to embedded moons like empty gaps, moon induced wakes or S-shaped propeller features. Furthermore, irregular radial structures are observed in the range from 10 meters until kilometers. Here some of these structures will be discussed in the frame of hydrodynamical modeling of Saturn's dense rings. For this purpose we will characterize the physical properties of the ring particle ensemble by mean field quantities and point to the special behavior of the transport coefficients. We show that unperturbed rings can become unstable and how diffusion acts in the rings. Additionally, the alternative streamline formalism is introduced to describe perturbed regions of dense rings with applications to the wake damping and the dispersion relation of the density waves.}, language = {en} } @article{MartinWinkelmannHaseloffetal.2011, author = {Martin, Maria A. and Winkelmann, Ricarda and Haseloff, M. and Albrecht, Tanja and Bueler, Ed and Khroulev, C. and Levermann, Anders}, title = {The Potsdam parallel ice sheet model (PISM-PIK) - Part 2: Dynamic equilibrium simulation of the Antarctic ice sheet}, series = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, volume = {5}, journal = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, number = {3}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1994-0416}, doi = {10.5194/tc-5-727-2011}, pages = {727 -- 740}, year = {2011}, abstract = {We present a dynamic equilibrium simulation of the ice sheet-shelf system on Antarctica with the Potsdam Parallel Ice Sheet Model (PISM-PIK). The simulation is initialized with present-day conditions for bed topography and ice thickness and then run to steady state with constant present-day surface mass balance. Surface temperature and sub-shelf basal melt distribution are parameterized. Grounding lines and calving fronts are free to evolve, and their modeled equilibrium state is compared to observational data. A physically-motivated calving law based on horizontal spreading rates allows for realistic calving fronts for various types of shelves. Steady-state dynamics including surface velocity and ice flux are analyzed for whole Antarctica and the Ronne-Filchner and Ross ice shelf areas in particular. The results show that the different flow regimes in sheet and shelves, and the transition zone between them, are captured reasonably well, supporting the approach of superposition of SIA and SSA for the representation of fast motion of grounded ice. This approach also leads to a natural emergence of sliding-dominated flow in stream-like features in this new 3-D marine ice sheet model.}, language = {en} } @article{WinkelmannMartinHaseloffetal.2011, author = {Winkelmann, Ricarda and Martin, Maria A. and Haseloff, Monika and Albrecht, Torsten and Bueler, Ed and Khroulev, C. and Levermann, Anders}, title = {The Potsdam parallel ice sheet model (PISM-PIK) - Part 1: Model description}, series = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, volume = {5}, journal = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, number = {3}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1994-0416}, doi = {10.5194/tc-5-715-2011}, pages = {715 -- 726}, year = {2011}, abstract = {We present the Potsdam Parallel Ice Sheet Model (PISM-PIK), developed at the Potsdam Institute for Climate Impact Research to be used for simulations of large-scale ice sheet-shelf systems. It is derived from the Parallel Ice Sheet Model (Bueler and Brown, 2009). Velocities are calculated by superposition of two shallow stress balance approximations within the entire ice covered region: the shallow ice approximation (SIA) is dominant in grounded regions and accounts for shear deformation parallel to the geoid. The plug-flow type shallow shelf approximation (SSA) dominates the velocity field in ice shelf regions and serves as a basal sliding velocity in grounded regions. Ice streams can be identified diagnostically as regions with a significant contribution of membrane stresses to the local momentum balance. All lateral boundaries in PISM-PIK are free to evolve, including the grounding line and ice fronts. Ice shelf margins in particular are modeled using Neumann boundary conditions for the SSA equations, reflecting a hydrostatic stress imbalance along the vertical calving face. The ice front position is modeled using a subgrid-scale representation of calving front motion (Albrecht et al., 2011) and a physically-motivated calving law based on horizontal spreading rates. The model is tested in experiments from the Marine Ice Sheet Model Intercomparison Project (MISMIP). A dynamic equilibrium simulation of Antarctica under present-day conditions is presented in Martin et al. (2011).}, language = {en} } @article{SeppTempelGramannetal.2011, author = {Sepp, T. and Tempel, E. and Gramann, M. and Nurmi, P. and Haupt, Michael}, title = {Studying the patterns of the universe}, series = {Baltic astronomy}, volume = {20}, journal = {Baltic astronomy}, number = {2}, publisher = {Institute of Theoretical Physics and Astronomy}, address = {Moletai}, issn = {1392-0049}, pages = {309 -- 312}, year = {2011}, abstract = {The SDSS galaxy catalog is one of the best databases for galaxy distribution studies. The SDSS DR8 data is used to construct the galaxy cluster catalog. We construct the clusters from the calculated luminosity density field and identify denser regions. Around these peak regions we construct galaxy clusters. Another interesting question in cosmology is how observable galaxy structures are connected to underlying dark matter distribution. To study this we compare the SDSS DR7 galaxy group catalog with galaxy groups obtained from the semi-analytical Millennium N-Body simulation. Specifically, we compare the group richness, virial radius, maximum separation and velocity dispersion distributions and find a relatively good agreement between the mock catalog and observations. This strongly supports the idea, that the dark matter distribution and galaxies in the semi-analytical models and observations are very closely linked.}, language = {en} } @article{ZhirovPikovskijShepelyansky2011, author = {Zhirov, O. V. and Pikovskij, Arkadij and Shepelyansky, Dima L.}, title = {Quantum vacuum of strongly nonlinear lattices}, series = {Physical review : E, Statistical, nonlinear and soft matter physics}, volume = {83}, journal = {Physical review : E, Statistical, nonlinear and soft matter physics}, number = {1}, publisher = {American Physical Society}, address = {College Park}, issn = {1539-3755}, doi = {10.1103/PhysRevE.83.016202}, pages = {7}, year = {2011}, abstract = {We study the properties of classical and quantum strongly nonlinear chains by means of extensive numerical simulations. Due to strong nonlinearity, the classical dynamics of such chains remains chaotic at arbitrarily low energies. We show that the collective excitations of classical chains are described by sound waves whose decay rate scales algebraically with the wave number with a generic exponent value. The properties of the quantum chains are studied by the quantum Monte Carlo method and it is found that the low-energy excitations are well described by effective phonon modes with the sound velocity dependent on an effective Planck constant. Our results show that at low energies the quantum effects lead to a suppression of chaos and drive the system to a quasi-integrable regime of effective phonon modes.}, language = {en} } @article{LemrCernochSoubustaetal.2011, author = {Lemr, Karel and Cernoch, A. and Soubusta, Jan and Kieling, Konrad and Eisert, Jens and Dusek, M.}, title = {Experimental implementation of the optimal linear-optical controlled phase gate}, series = {Physical review letters}, volume = {106}, journal = {Physical review letters}, number = {1}, publisher = {American Physical Society}, address = {College Park}, issn = {0031-9007}, doi = {10.1103/PhysRevLett.106.013602}, pages = {4}, year = {2011}, abstract = {We report on the first experimental realization of optimal linear-optical controlled phase gates for arbitrary phases. The realized scheme is entirely flexible in that the phase shift can be tuned to any given value. All such controlled phase gates are optimal in the sense that they operate at the maximum possible success probabilities that are achievable within the framework of postselected linear-optical implementations with vacuum ancillas. The quantum gate is implemented by using bulk optical elements and polarization encoding of qubit states. We have experimentally explored the remarkable observation that the optimum success probability is not monotone in the phase.}, language = {en} }