@phdthesis{Pauli2024,
  author    = {Pauli, Daniel},
  title     = {Unraveling massive star and binary physics in the nearby low-metallicity galaxy, the Small Magellanic Cloud, as a proxy for high-redshift galaxies},
  doi       = {10.25932/publishup-65318},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-653184},
  school      = {Universit{\"a}t Potsdam},
  pages     = {169},
  year      = {2024},
  abstract  = {Massive stars (Mini > 8 Msol) are the key feedback agents within galaxies, as they shape their surroundings via their powerful winds, ionizing radiation, and explosive supernovae. Most massive stars are born in binary systems, where interactions with their companions significantly alter their evolution and the feedback they deposit in their host galaxy. Understanding binary evolution, particularly in the low-metallicity environments as proxies for the Early Universe, is crucial for interpreting the rest-frame ultraviolet spectra observed in high-redshift galaxies by telescopes like Hubble and James Webb. This thesis aims to tackle this challenge by investigating in detail massive binaries within the low-metallicity environment of the Small Magellanic Cloud galaxy. From ultraviolet and multi-epoch optical spectroscopic data, we uncovered post-interaction binaries. To comprehensively characterize these binary systems, their stellar winds, and orbital parameters, we use a multifaceted approach. The Potsdam Wolf-Rayet stellar atmosphere code is employed to obtain the stellar and wind parameters of the stars. Additionally, we perform consistent light and radial velocity fitting with the Physics of Eclipsing Binaries software, allowing for the independent determination of orbital parameters and component masses. Finally, we utilize these results to challenge the standard picture of stellar evolution and improve our understanding of low-metallicity stellar populations by calculating our binary evolution models with the Modules for Experiments in Stellar Astrophysics code. We discovered the first four O-type post-interaction binaries in the SMC (Chapters 2, 5, and 6). Their primary stars have temperatures similar to other OB stars and reside far from the helium zero-age main sequence, challenging the traditional view of binary evolution. Our stellar evolution models suggest this may be due to enhanced mixing after core-hydrogen burning. Furthermore, we discovered the so-far most massive binary system undergoing mass transfer (Chapter 3), offering a unique opportunity to test mass-transfer efficiency in extreme conditions. Our binary evolution calculations revealed unexpected evolutionary pathways for accreting stars in binaries, potentially providing the missing link to understanding the observed Wolf-Rayet population within the SMC (Chapter 4). The results presented in this thesis unveiled the properties of massive binaries at low-metallicity which challenge the way the spectra of high-redshift galaxies are currently being analyzed as well as our understanding of massive-star feedback within galaxies.},
  language  = {en}
}
@article{GrasslRitterSchulz2022,
  author    = {Grassl, Sandra and Ritter, Christoph and Schulz, Alexander},
  title     = {The nature of the Ny-Alesund wind field analysed by high-resolution windlidar data},
  series = {Remote sensing},
  volume    = {14},
  journal   = {Remote sensing},
  number    = {15},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2072-4292},
  doi       = {10.3390/rs14153771},
  pages     = {24},
  year      = {2022},
  abstract  = {In this work we present windlidar data for the research village Ny-Alesund located on Svalbard in the European Arctic (78.923 degrees N, 11.928 degrees F) from 2013 to 2021. The data have a resolution of 50 m and 10 min with an overlapping height of about 150 m. The maximum range depends on the meteorologic situation. Up to 1000 m altitude the data availability is better than 71\%. We found that the highest wind speeds occur in November and December, the lowest ones in June and July, up to 500 m altitude the wind is channelled strongly in ESE to NW direction parallel to the fjord axis and the synoptic conditions above 1000 m altitude already dominate. While the fraction of windy days (v > 10 m/s) varies significantly from month to month, there is no overall trend of the wind visible in our data set. We define gusts and jets by the requirement of wind maxima v > 2 m/s above and below a wind maximum. In total, more than 24,000 of these events were identified (corresponding to 6\% of the time), of which 223 lasted for at least 100 min ("Long Jets"). All of these events are fairly equally distributed over the months relatively to the available data. Further, gusts and jets follow different distributions (in terms of altitude or depths) and occur more frequently for synoptic flow from roughly a southerly direction. Jets do not show a clear correlation between occurrence and synoptic flow. Gusts and jets are not related to cloud cover. We conclude that the atmosphere from 400 m to 1000 m above Ny-Alesund is dominated by a turbulent wind shear zone, which connects the micrometeorology in the atmospheric boundary layer (ABL) with the synoptic flow.},
  language  = {en}
}
@phdthesis{Fulat2024,
  author    = {Fulat, Karol},
  title     = {Electron acceleration at quasi-perpendicular shocks in supernova remnants},
  doi       = {10.25932/publishup-65136},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-651365},
  school      = {Universit{\"a}t Potsdam},
  pages     = {vi, 94},
  year      = {2024},
  abstract  = {Astrophysical shocks, driven by explosive events such as supernovae, efficiently accelerate charged particles to relativistic energies. The majority of these shocks occur in collisionless plasmas where the energy transfer is dominated by particle-wave interactions.Strong nonrelativistic shocks found in supernova remnants are plausible sites of galactic cosmic ray production, and the observed emission indicates the presence of nonthermal electrons. To participate in the primary mechanism of energy gain - Diffusive Shock Acceleration - electrons must have a highly suprathermal energy, implying a need for very efficient pre-acceleration. This poorly understood aspect of the shock acceleration theory is known as the electron injection problem. Studying electron-scale phenomena requires the use of fully kinetic particle-in-cell (PIC) simulations, which describe collisionless plasma from first principles. Most published studies consider a homogenous upstream medium, but turbulence is ubiquitous in astrophysical environments and is typically driven at magnetohydrodynamic scales, cascading down to kinetic scales. For the first time, I investigate how preexisting turbulence affects electron acceleration at nonrelativistic shocks using the fully kinetic approach. To accomplish this, I developed a novel simulation framework that allows the study of shocks propagating in turbulent media. It involves simulating slabs of turbulent plasma separately, which are further continuously inserted into a shock simulation. This demands matching of the plasma slabs at the interface. A new procedure of matching electromagnetic fields and currents prevents numerical transients, and the plasma evolves self-consistently. The versatility of this framework has the potential to render simulations more consistent with turbulent systems in various astrophysical environments. In this Thesis, I present the results of 2D3V PIC simulations of high-Mach-number nonrelativistic shocks with preexisting compressive turbulence in an electron-ion plasma. The chosen amplitudes of the density fluctuations (\$\lesssim15\\%\$) concord with \textit{in situ} measurements in the heliosphere and the local interstellar medium. I explored how these fluctuations impact the dynamics of upstream electrons, the driving of the plasma instabilities, electron heating and acceleration. My results indicate that while the presence of the turbulence enhances variations in the upstream magnetic field, their levels remain too low to influence the behavior of electrons at perpendicular shocks significantly. However, the situation is different at oblique shocks. The external magnetic field inclined at an angle between \$50^\circ \lesssim \theta_\text{Bn} \lesssim 75^\circ\$ relative to the shock normal allows the escape of fast electrons toward the upstream region. An extended electron foreshock region is formed, where these particles drive various instabilities. Results of an oblique shock with \$\theta_\text{Bn}=60^\circ\$ propagating in preexisting compressive turbulence show that the foreshock becomes significantly shorter, and the shock-reflected electrons have higher temperatures. Furthermore, the energy spectrum of downstream electrons shows a well-pronounced nonthermal tail that follows a power law with an index up to -2.3. The methods and results presented in this Thesis could serve as a starting point for more realistic modeling of interactions between shocks and turbulence in plasmas from first principles.},
  language  = {en}
}
@phdthesis{ValenciaSanmiguel2003,
  author    = {Valencia Sanmiguel, Antonio},
  title     = {Condensation and crystallization on patterned surfaces},
  doi       = {10.25932/publishup-65195},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-651950},
  school      = {Universit{\"a}t Potsdam},
  pages     = {102, XXII},
  year      = {2003},
  abstract  = {Condensation and crystallization are omnipresent phenomena in nature. The formation of droplets or crystals on a solid surface are familiar processes which, beyond their scientific interest, are required in many technological applications. In recent years, experimental techniques have been developed which allow patterning a substrate with surface domains of molecular thickness, surface area in the mesoscopic scale, and different wettabilities (i.e., different degrees of preference for a substance that is in contact with the substrate). The existence of new patterned surfaces has led to increased theoretical efforts to understand wetting phenomena in such systems. In this thesis, we deal with some problems related to the equilibrium of phases (e.g., liquid-vapor coexistence) and the kinetics of phase separation in the presence of chemically patterned surfaces. Two different cases are considered: (i) patterned surfaces in contact with liquid and vapor, and (ii) patterned surfaces in contact with a crystalline phase. One of the problems that we have studied is the following: It is widely believed that if air containing water vapor is cooled to its dew point, droplets of water are immediately formed. Although common experience seems to support this view, it is not correct. It is only when air is cooled well below its dew point that the phase transition occurs immediately. A vapor cooled slightly below its dew point is in a metastable state, meaning that the liquid phase is more stable than the vapor, but the formation of droplets requires some time to occur, which can be very long. It was first pointed out by J. W. Gibbs that the metastability of a vapor depends on the energy necessary to form a nucleus (a droplet of a critical size). Droplets smaller than the critical size will tend to disappear, while droplets larger than the critical size will tend to grow. This is consistent with an energy barrier that has its maximum at the critical size, as is the case for droplets formed directly in the vapor or in contact with a chemically uniform planar wall. Classical nucleation theory describes the time evolution of the condensation in terms of the random process of droplet growth through this energy barrier. This process is activated by thermal fluctuations, which eventually will form a droplet of the critical size. We consider nucleation of droplets from a vapor on a substrate patterned with easily wettable (lyophilic) circular domains. Under certain conditions of pressure and temperature, the condensation of a droplet on a lyophilic circular domain proceeds through a barrier with two maxima (a double barrier). We have extended classical nucleation theory to account for the kinetics of nucleation through a double barrier, and applied this extension to nucleation on lyophilic circular domains.},
  language  = {en}
}
@misc{HorvatWienerSchmelingetal.2022,
  author    = {Horvat, Anja Kranjc and Wiener, Jeff and Schmeling, Sascha Marc and Borowski, Andreas},
  title     = {What does the curriculum say? Review of the particle physics content in 27 high-school physics curricula},
  series = {Physics},
  volume    = {4},
  journal   = {Physics},
  number    = {4},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2624-8174},
  doi       = {10.3390/physics4040082},
  pages     = {1278 -- 1298},
  year      = {2022},
  abstract  = {This international curricular review provides a structured overview of the particle physics content in 27 state, national, and international high-school physics curricula. The review was based on a coding manual that included 60 concepts that were identified as relevant for high-school particle physics education. Two types of curricula were reviewed, namely curricula with a dedicated particle physics chapter and curricula without a dedicated particle physics chapter. The results of the curricular review show that particle physics concepts are explicitly or implicitly present in all reviewed curricula. However, the number of particle physics concepts that are featured in a curriculum varies greatly across the reviewed curricula. We identified core particle physics concepts that can be found in most curricula. Here, elementary particles, fundamental interactions, and charges were identified as explicit particle physics concepts that are featured in more than half of the reviewed curricula either as content or context. Indeed, theoretical particle physics concepts are more prominent in high-school physics curricula than experimental particle physics concepts. Overall, this international curricular review provides the basis for future curricular development with respect to particle physics and suggests an increased inclusion of experimental particle physics concepts in high-school physics curricula.},
  language  = {en}
}
@article{PasechnikShmelevaSaidgazievetal.2022,
  author    = {Pasechnik, Sergey V. and Shmeleva, Dina and Saidgaziev, Ayvr Sh. and Kharlamov, Semen and Vasilieva, Aleksandra A. and Santer, Svetlana},
  title     = {Shear flows induced by electro-osmotic pumps in optofluidic liquid crystal cell for modulation of visible light and THz irradiation},
  series = {Liquid Crystals and their Application : Russian Journal},
  volume    = {22},
  journal   = {Liquid Crystals and their Application : Russian Journal},
  number    = {3},
  publisher = {Nanomaterials Research Institute},
  address   = {Ivanovo},
  issn      = {1991-3966},
  doi       = {10.18083/LCAppl.2022.3.49},
  pages     = {49 -- 57},
  year      = {2022},
  abstract  = {The work is devoted to the use of electrokinetic phenomena in liquid crystals to create a new class of microfluidics devices - optofluidics, designed to control electromagnetic radiation, including the THz frequency range. To achieve the goal, an optical method is used to study changes in the orientational structure in LC layers caused by a shear flow generated by electroosmotic pumps. Simula-tion of LC behaviour in an experimental cell containing electroosmotic pumps and flat layers of a nematic liquid crystal is fulfilled. The experimental depend-ences of the intensity of polarized radiation passing through flat LC layers on the control voltage applied to the electroosmotic pump and the results of calcu-lations of the hydrodynamic and mechano-optical characteristics of the experi-mental LC cell are presented. The propagation of THz irradiation across the multilayer structure of the optofluidic cell is considered taking into account the minimum number of re-reflections of waves from different layers and the ab-sorption of THz irradiation in a propylene and a liquid crystal.},
  language  = {en}
}
@misc{RosenblumMcClintock2022,
  author    = {Rosenblum, Michael and McClintock, Peter V. E.},
  title     = {In memoriam - Polina S. Landa (15 February 1931-21 October 2022)},
  series = {Chaos : an interdisciplinary journal of nonlinear science},
  volume    = {32},
  journal   = {Chaos : an interdisciplinary journal of nonlinear science},
  number    = {12},
  publisher = {American Institute of Physics},
  address   = {Woodbury, NY},
  issn      = {1054-1500},
  doi       = {10.1063/5.0136898},
  pages     = {2},
  year      = {2022},
  language  = {en}
}
@article{ZhengToenjes2022,
  author    = {Zheng, Chunming and T{\"o}njes, Ralf},
  title     = {Noise-induced swarming of active particles},
  series = {Physical review : E, Statistical, nonlinear and soft matter physics},
  volume    = {106},
  journal   = {Physical review : E, Statistical, nonlinear and soft matter physics},
  number    = {6},
  publisher = {American Physical Society},
  address   = {College Park},
  issn      = {2470-0045},
  doi       = {10.1103/PhysRevE.106.064601},
  pages     = {7},
  year      = {2022},
  abstract  = {We report on the effect of spatially correlated noise on the velocities of self-propelled particles. Correlations in the random forces acting on self-propelled particles can induce directed collective motion, i.e., swarming. Even with repulsive coupling in the velocity directions, which favors a disordered state, strong correlations in the fluctuations can align the velocities locally leading to a macroscopic, turbulent velocity field. On the other hand, while spatially correlated noise is aligning the velocities locally, the swarming transition to globally directed motion is inhibited when the correlation length of the noise is nonzero, but smaller than the system size. We analyze the swarming transition in d-dimensional space in a mean field model of globally coupled velocity vectors.},
  language  = {en}
}
@article{SerranoMunozRovedaKupschetal.2022,
  author    = {Serrano-Munoz, Itziar and Roveda, Ilaria and Kupsch, Andreas and M{\"u}ller, Bernd R. and Bruno, Giovanni},
  title     = {Synchrotron X-ray refraction detects microstructure and porosity evolution during in-situ heat treatments},
  series = {Materials Science and Engineering A: Structural Materials: Properties, Microstructure and Processing},
  volume    = {838},
  journal   = {Materials Science and Engineering A: Structural Materials: Properties, Microstructure and Processing},
  publisher = {Elsevier},
  address   = {Lausanne},
  issn      = {0921-5093},
  doi       = {10.1016/j.msea.2022.142732},
  pages     = {11},
  year      = {2022},
  abstract  = {For the first time, synchrotron X-ray refraction radiography (SXRR) has been paired with in-situ heat treatment to monitor microstructure and porosity evolution as a function of temperature. The investigated material was a laser powder bed fusion (LPBF) manufactured AlSi10Mg, where the initial eutectic Si network is known to disintegrate and spherodize into larger particles with increasing temperature. Such alloy is also prone to ther-mally induced porosity (TIP). We show that SXRR allows detecting the changes in the Si-phase morphology upon heating, while this is currently possible only using scanning electron microscopy. SXRR also allows observing the growth of pores, usually studied via X-ray computed tomography, but on much smaller fields-of-view. Our results show the great potential of in-situ SXRR as a tool to gain in-depth knowledge of the susceptibility of any material to thermally induced damage and/or microstructure evolution over statistically relevant volumes.},
  language  = {en}
}
@article{PfeiferBeierAlirezaeizanjanietal.2022,
  author    = {Pfeifer, Veronika and Beier, S{\"o}nke and Alirezaeizanjani, Zahra and Beta, Carsten},
  title     = {Role of the two flagellar stators in swimming motility of pseudomonas putida},
  series = {mBio},
  volume    = {13},
  journal   = {mBio},
  number    = {6},
  publisher = {American Society for Microbiology},
  address   = {Washington},
  issn      = {2150-7511},
  doi       = {10.1128/mbio.02182-22},
  pages     = {12},
  year      = {2022},
  abstract  = {In the soil bacterium Pseudomonas putida, the motor torque for flagellar rotation is generated by the two stators MotAB and MotCD. Here, we construct mutant strains in which one or both stators are knocked out and investigate their swimming motility in fluids of different viscosity and in heterogeneous structured environments (semisolid agar). Besides phase-contrast imaging of single-cell trajectories and spreading cultures, dual-color fluorescence microscopy allows us to quantify the role of the stators in enabling P. putida's three different swimming modes, where the flagellar bundle pushes, pulls, or wraps around the cell body. The MotAB stator is essential for swimming motility in liquids, while spreading in semisolid agar is not affected. Moreover, if the MotAB stator is knocked out, wrapped mode formation under low-viscosity conditions is strongly impaired and only partly restored for increased viscosity and in semisolid agar. In contrast, when the MotCD stator is missing, cells are indistinguishable from the wild type in fluid experiments but spread much more slowly in semisolid agar. Analysis of the microscopic trajectories reveals that the MotCD knockout strain forms sessile clusters, thereby reducing the number of motile cells, while the swimming speed is unaffected. Together, both stators ensure a robust wild type that swims efficiently under different environmental conditions. IMPORTANCE Because of its heterogeneous habitat, the soil bacterium Pseudomonas putida needs to swim efficiently under very different environmental conditions. In this paper, we knocked out the stators MotAB and MotCD to investigate their impact on the swimming motility of P. putida. While the MotAB stator is crucial for swimming in fluids, in semisolid agar, both stators are sufficient to sustain a fast-swimming phenotype and increased frequencies of the wrapped mode, which is known to be beneficial for escaping mechanical traps. However, in contrast to the MotAB knockout, a culture of MotCD knockout cells spreads much more slowly in the agar, as it forms nonmotile clusters that reduce the number of motile cells. Because of its heterogeneous habitat, the soil bacterium Pseudomonas putida needs to swim efficiently under very different environmental conditions. In this paper, we knocked out the stators MotAB and MotCD to investigate their impact on the swimming motility of P. putida.},
  language  = {en}
}
@article{MarkoetterSintschukBritzkeetal.2022,
  author    = {Mark{\"o}tter, Henning and Sintschuk, Michael and Britzke, Ricardo and Dayani, Shahabeddin and Bruno, Giovanni},
  title     = {Upgraded imaging capabilities at the BAMline (BESSY II)},
  series = {Journal of synchrotron radiation},
  volume    = {29},
  journal   = {Journal of synchrotron radiation},
  number    = {5},
  publisher = {International Union of Crystallography},
  address   = {Chester},
  issn      = {1600-5775},
  doi       = {10.1107/S1600577522007342},
  pages     = {1292 -- 1298},
  year      = {2022},
  abstract  = {The BAMline at the BESSY II synchrotron X-ray source has enabled research for more than 20 years in widely spread research fields such as materials science, biology, cultural heritage and medicine. As a nondestructive characterization method, synchrotron X-ray imaging, especially tomography, plays a particularly important role in structural characterization. A recent upgrade of key equipment of the BAMline widens its imaging capabilities: shorter scan acquisition times are now possible, in situ and op erando studies can now be routinely performed, and different energy spectra can easily be set up. In fact, the upgraded double-multilayer monochromator brings full flexibility by yielding different energy spectra to optimize flux and energy resolution as desired. The upgraded detector (based on an sCMOS camera) also allows exploiting the higher flux with reduced readout times. Furthermore, an installed slip ring allows the sample stage to continuously rotate. The latter feature enables tomographic observation of processes occurring in the time scale of a few seconds.},
  language  = {en}
}
@phdthesis{NovakovicMarinkovic2024,
  author    = {Novakovic-Marinkovic, Nina},
  title     = {Optical control of bubble domains and skyrmions in thin films},
  doi       = {10.25932/publishup-64706},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-647069},
  school      = {Universit{\"a}t Potsdam},
  pages     = {ii, 106},
  year      = {2024},
  abstract  = {Laser induced switching offers an attractive possibility to manipulate small magnetic domains for prospective memory and logic devices on ultrashort time scales. Moreover, optical control of magnetization without high applied magnetic fields allows manipulation of magnetic domains individually and locally, without expensive heat dissipation. One of the major challenges for developing novel optically controlled magnetic memory and logic devices is reliable formation and annihilation of non-volatile magnetic domains that can serve as memory bits in ambient conditions. Magnetic skyrmions, topologically nontrivial spin textures, have been studied intensively since their discovery due to their stability and scalability in potential spintronic devices. However, skyrmion formation and, especially, annihilation processes are still not completely understood and further investigation on such mechanisms are needed. The aim of this thesis is to contribute to better understanding of the physical processes behind the optical control of magnetism in thin films, with the goal of optimizing material parameters and methods for their potential use in next generation memory and logic devices. First part of the thesis is dedicated to investigation of all-optical helicity-dependent switching (AO-HDS) as a method for magnetization manipulation. AO-HDS in Co/Pt multilayer and CoFeB alloys with and without the presence of Dzyaloshinskii-Moriya interaction (DMI), which is a type of exchange interaction, have been investigated by magnetic imaging using photo-emission electron microscopy (PEEM) in combination with X-ray magnetic circular dichroism (XMCD). The results show that in a narrow range of the laser fluence, circularly polarized laser light induces a drag on domain walls. This enables a local deterministic transformation of the magnetic domain pattern from stripes to bubbles in out-of-plane magnetized Co/Pt multilayers, only controlled by the helicity of ultrashort laser pulses. The temperature and characteristic fields at which the stripe-bubble transformation occurs has been calculated using theory for isolated magnetic bubbles, using as parameters experimentally determined average size of stripe domains and the magnetic layer thickness. The second part of the work aims at purely optical formation and annihilation of magnetic skyrmions by a single laser pulse. The presence of a skyrmion phase in the investigated CoFeB alloys was first confirmed using a Kerr microscope. Then the helicity-dependent skyrmion manipulation was studied using AO-HDS at different laser fluences. It was found that formation or annihilation individual skyrmions using AO-HDS is possible, but not always reliable, as fluctuations in the laser fluence or position can easily overwrite the helicity-dependent effect of AO-HDS. However, the experimental results and magnetic simulations showed that the threshold values for the laser fluence for the formation and annihilation of skyrmions are different. A higher fluence is required for skyrmion formation, and existing skyrmions can be annihilated by pulses with a slightly lower fluence. This provides a further option for controlling formation and annihilation of skyrmions using the laser fluence. Micromagnetic simulations provide additional insights into the formation and annihilation mechanism. The ability to manipulate the magnetic state of individual skyrmions is of fundamental importance for magnetic data storage technologies. Our results show for the first time that the optical formation and annihilation of skyrmions is possible without changing the external field. These results enable further investigations to optimise the magnetic layer to maximise the energy gap between the formation and annihilation barrier. As a result, unwanted switching due to small laser fluctuations can be avoided and fully deterministic optical switching can be achieved.},
  language  = {en}
}
@article{RosenblumPikovsky2023,
  author    = {Rosenblum, Michael and Pikovsky, Arkady},
  title     = {Inferring connectivity of an oscillatory network via the phase dynamics reconstruction},
  series = {Frontiers in network physiology},
  volume    = {3},
  journal   = {Frontiers in network physiology},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {2674-0109},
  doi       = {10.3389/fnetp.2023.1298228},
  pages     = {10},
  year      = {2023},
  abstract  = {We review an approach for reconstructing oscillatory networks' undirected and directed connectivity from data. The technique relies on inferring the phase dynamics model. The central assumption is that we observe the outputs of all network nodes. We distinguish between two cases. In the first one, the observed signals represent smooth oscillations, while in the second one, the data are pulse-like and can be viewed as point processes. For the first case, we discuss estimating the true phase from a scalar signal, exploiting the protophase-to-phase transformation. With the phases at hand, pairwise and triplet synchronization indices can characterize the undirected connectivity. Next, we demonstrate how to infer the general form of the coupling functions for two or three oscillators and how to use these functions to quantify the directional links. We proceed with a different treatment of networks with more than three nodes. We discuss the difference between the structural and effective phase connectivity that emerges due to high-order terms in the coupling functions. For the second case of point-process data, we use the instants of spikes to infer the phase dynamics model in the Winfree form directly. This way, we obtain the network's coupling matrix in the first approximation in the coupling strength.},
  language  = {en}
}
@article{CestnikMauRosenblum2022,
  author    = {Cestnik, Rok and Mau, Erik T. K. and Rosenblum, Michael},
  title     = {Inferring oscillator's phase and amplitude response from a scalar signal exploiting test stimulation},
  series = {New journal of physics : the open-access journal for physics},
  volume    = {24},
  journal   = {New journal of physics : the open-access journal for physics},
  number    = {12},
  publisher = {Dt. Physikalische Ges., IOP},
  address   = {Bad Honnef, London},
  issn      = {1367-2630},
  doi       = {10.1088/1367-2630/aca70a},
  pages     = {27},
  year      = {2022},
  abstract  = {The phase sensitivity curve or phase response curve (PRC) quantifies the oscillator's reaction to stimulation at a specific phase and is a primary characteristic of a self-sustained oscillatory unit. Knowledge of this curve yields a phase dynamics description of the oscillator for arbitrary weak forcing. Similar, though much less studied characteristic, is the amplitude response that can be defined either using an ad hoc approach to amplitude estimation or via the isostable variables. Here, we discuss the problem of the phase and amplitude response inference from observations using test stimulation. Although PRC determination for noise-free neuronal-like oscillators perturbed by narrow pulses is a well-known task, the general case remains a challenging problem. Even more challenging is the inference of the amplitude response. This characteristic is crucial, e.g. for controlling the amplitude of the collective mode in a network of interacting units-a task relevant to neuroscience. Here, we compare the performance of different techniques suitable for inferring the phase and amplitude response, particularly with application to macroscopic oscillators. We suggest improvements to these techniques, e.g. demonstrating how to obtain the PRC in case of stimuli of arbitrary shape. Our main result is a novel technique denoted by IPID-1, based on the direct reconstruction of the Winfree equation and the analogous first-order equation for isostable dynamics. The technique works for signals with or without well-pronounced marker events and pulses of arbitrary shape; in particular, we consider charge-balanced pulses typical in neuroscience applications. Moreover, this technique is superior for noisy and high-dimensional systems. Additionally, we describe an error measure that can be computed solely from data and complements any inference technique.},
  language  = {en}
}
@article{ZhelavskayaAseevShprits2021,
  author    = {Zhelavskaya, Irina and Aseev, Nikita and Shprits, Yuri},
  title     = {A combined neural network- and physics-based approach for modeling plasmasphere dynamics},
  series = {JGR / AGU, American Geographical Union. Space Physics},
  volume    = {126},
  journal   = {JGR / AGU, American Geographical Union. Space Physics},
  number    = {3},
  publisher = {Wiley},
  address   = {Hoboken, NJ},
  issn      = {2169-9380},
  doi       = {10.1029/2020JA028077},
  pages     = {30},
  year      = {2021},
  abstract  = {Abstract In recent years, feedforward neural networks (NNs) have been successfully applied to reconstruct global plasmasphere dynamics in the equatorial plane. These neural network-based models capture the large-scale dynamics of the plasmasphere, such as plume formation and erosion of the plasmasphere on the nightside. However, their performance depends strongly on the availability of training data. When the data coverage is limited or non-existent, as occurs during geomagnetic storms, the performance of NNs significantly decreases, as networks inherently cannot learn from the limited number of examples. This limitation can be overcome by employing physics-based modeling during strong geomagnetic storms. Physics-based models show a stable performance during periods of disturbed geomagnetic activity if they are correctly initialized and configured. In this study, we illustrate how to combine the neural network- and physics-based models of the plasmasphere in an optimal way by using data assimilation. The proposed approach utilizes advantages of both neural network- and physics-based modeling and produces global plasma density reconstructions for both quiet and disturbed geomagnetic activity, including extreme geomagnetic storms. We validate the models quantitatively by comparing their output to the in-situ density measurements from RBSP-A for an 18-month out-of-sample period from June 30, 2016 to January 01, 2018 and computing performance metrics. To validate the global density reconstructions qualitatively, we compare them to the IMAGE EUV images of the He+ particle distribution in the Earth's plasmasphere for a number of events in the past, including the Halloween storm in 2003.},
  language  = {en}
}
@article{DurandvandenBroekeLeCozannetetal.2022,
  author    = {Durand, Gael and van den Broeke, Michiel R. and Le Cozannet, Goneri and Edwards, Tamsin L. and Holland, Paul R. and Jourdain, Nicolas C. and Marzeion, Ben and Mottram, Ruth and Nicholls, Robert J. and Pattyn, Frank and Paul, Frank and Slangen, Aimee B. A. and Winkelmann, Ricarda and Burgard, Clara and van Calcar, Caroline J. and Barre, Jean-Baptiste and Bataille, Amelie and Chapuis, Anne},
  title     = {Sea-Level rise: from global perspectives to local services},
  series = {Frontiers in Marine Science},
  volume    = {8},
  journal   = {Frontiers in Marine Science},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {2296-7745},
  doi       = {10.3389/fmars.2021.709595},
  pages     = {8},
  year      = {2022},
  abstract  = {Coastal areas are highly diverse, ecologically rich, regions of key socio-economic activity, and are particularly sensitive to sea-level change. Over most of the 20th century, global mean sea level has risen mainly due to warming and subsequent expansion of the upper ocean layers as well as the melting of glaciers and ice caps. Over the last three decades, increased mass loss of the Greenland and Antarctic ice sheets has also started to contribute significantly to contemporary sea-level rise. The future mass loss of the two ice sheets, which combined represent a sea-level rise potential of similar to 65 m, constitutes the main source of uncertainty in long-term (centennial to millennial) sea-level rise projections. Improved knowledge of the magnitude and rate of future sea-level change is therefore of utmost importance. Moreover, sea level does not change uniformly across the globe and can differ greatly at both regional and local scales. The most appropriate and feasible sea level mitigation and adaptation measures in coastal regions strongly depend on local land use and associated risk aversion. Here, we advocate that addressing the problem of future sea-level rise and its impacts requires (i) bringing together a transdisciplinary scientific community, from climate and cryospheric scientists to coastal impact specialists, and (ii) interacting closely and iteratively with users and local stakeholders to co-design and co-build coastal climate services, including addressing the high-end risks.},
  language  = {en}
}
@article{KretzschmarAshbyFearonetal.2022,
  author    = {Kretzschmar, Mirjam E. and Ashby, Ben and Fearon, Elizabeth and Overton, Christopher E. and Panovska-Griffiths, Jasmina and Pellis, Lorenzo and Quaife, Matthew and Rozhnova, Ganna and Scarabel, Francesca and Stage, Helena B. and Swallow, Ben and Thompson, Robin N. and Tildesley, Michael J. and Villela, Daniel Campos},
  title     = {Challenges for modelling interventions for future pandemics},
  series = {Epidemics},
  volume    = {38},
  journal   = {Epidemics},
  publisher = {Elsevier},
  address   = {Amsterdam},
  issn      = {1755-4365},
  doi       = {10.1016/j.epidem.2022.100546},
  pages     = {13},
  year      = {2022},
  abstract  = {Mathematical modelling and statistical inference provide a framework to evaluate different non-pharmaceutical and pharmaceutical interventions for the control of epidemics that has been widely used during the COVID-19 pandemic. In this paper, lessons learned from this and previous epidemics are used to highlight the challenges for future pandemic control. We consider the availability and use of data, as well as the need for correct parameterisation and calibration for different model frameworks. We discuss challenges that arise in describing and distinguishing between different interventions, within different modelling structures, and allowing both within and between host dynamics. We also highlight challenges in modelling the health economic and political aspects of interventions. Given the diversity of these challenges, a broad variety of interdisciplinary expertise is needed to address them, combining mathematical knowledge with biological and social insights, and including health economics and communication skills. Addressing these challenges for the future requires strong cross disciplinary collaboration together with close communication between scientists and policy makers.},
  language  = {en}
}
@article{AndersKhalatyanQueirozetal.2022,
  author    = {Anders, Friedrich and Khalatyan, Arman and Queiroz, Anna B. A. and Chiappini, Cristina and Ard{\`e}vol, Judith and Casamiquela, Laia and Figueras, Francesca and Jim{\´e}nez-Arranz, {\´O}scar and Jordi, Carme and Monguio, Maria and Romero-G{\´o}mez, Merce and Altamirano, Diego and Antoja, Teresa and Assaad, R. and Cantat-Gaudin, Tristan and Castro-Ginard, Alfred and Enke, Harry and Girardi, L{\´e}o and Guiglion, Guillaume and Khan, Saniya and Luri, Xavier and Miglio, Andrea and Minchev, Ivan and Ramos, Pau and Santiago, Basillio Xavier and Steinmetz, Matthias},
  title     = {Photo-astrometric distances, extinctions, and astrophysical parameters for Gaia EDR3 stars brighter than G=18.5},
  series = {Astronomy and astrophysics},
  volume    = {658},
  journal   = {Astronomy and astrophysics},
  publisher = {EDP Sciences},
  address   = {Les Ulis},
  issn      = {0004-6361},
  doi       = {10.1051/0004-6361/202142369},
  pages     = {27},
  year      = {2022},
  abstract  = {We present a catalogue of 362 million stellar parameters, distances, and extinctions derived from Gaia's Early Data Release (EDR3) cross-matched with the photometric catalogues of Pan-STARRS1, SkyMapper, 2MASS, and All WISE. The higher precision of the Gaia EDR3 data, combined with the broad wavelength coverage of the additional photometric surveys and the new stellar-density priors of the StarHorse code, allows us to substantially improve the accuracy and precision over previous photo-astrometric stellar-parameter estimates. At magnitude G = 14 (17), our typical precisions amount to 3\% (15\%) in distance, 0.13 mag (0.15 mag) in V-band extinction, and 140 K (180 K) in effective temperature. Our results are validated by comparisons with open clusters, as well as with asteroseismic and spectroscopic measurements, indicating systematic errors smaller than the nominal uncertainties for the vast majority of objects. We also provide distance- and extinction-corrected colour-magnitude diagrams, extinction maps, and extensive stellar density maps that reveal detailed substructures in the Milky Way and beyond. The new density maps now probe a much greater volume, extending to regions beyond the Galactic bar and to Local Group galaxies, with a larger total number density. We publish our results through an ADQL query interface (gaia . aip . de) as well as via tables containing approximations of the full posterior distributions. Our multi-wavelength approach and the deep magnitude limit render our results useful also beyond the next Gaia release, DR3.},
  language  = {en}
}
@article{KelesMallonnKitzmannetal.2022,
  author    = {Keles, Engin and Mallonn, Matthias and Kitzmann, Daniel and Poppenh{\"a}ger, Katja and Hoeijmakers, H. Jens and Ilyin, Ilya and Alexoudi, Xanthippi and Carroll, Thorsten A. and Alvarado-Gomez, Julian and Ketzer, Laura and Bonomo, Aldo S. and Borsa, Francesco and Gaudi, B. Scott and Henning, Thomas and Malavolta, Luca and Molaverdikhani, Karan and Nascimbeni, Valerio and Patience, Jennifer and Pino, Lorenzo and Scandariato, Gaetano and Schlawin, Everett and Shkolnik, Evgenya and Sicilia, Daniela and Sozzetti, Alessandro and Foster, Mary G. and Veillet, Christian and Wang, Ji and Yan, Fei and Strassmeier, Klaus G.},
  title     = {The PEPSI exoplanet transit survey (PETS) I: Investigating the presence of a silicate atmosphere on the super-earth 55 Cnc e},
  series = {Monthly notices of the Royal Astronomical Society},
  volume    = {513},
  journal   = {Monthly notices of the Royal Astronomical Society},
  number    = {1},
  publisher = {Oxford University Press},
  address   = {Oxford},
  issn      = {0035-8711},
  doi       = {10.1093/mnras/stac810},
  pages     = {1544 -- 1556},
  year      = {2022},
  abstract  = {The study of exoplanets and especially their atmospheres can reveal key insights on their evolution by identifying specific atmospheric species. For such atmospheric investigations, high-resolution transmission spectroscopy has shown great success, especially for Jupiter-type planets. Towards the atmospheric characterization of smaller planets, the super-Earth exoplanet 55 Cnc e is one of the most promising terrestrial exoplanets studied to date. Here, we present a high-resolution spectroscopic transit observation of this planet, acquired with the PEPSI instrument at the Large Binocular Telescope. Assuming the presence of Earth-like crust species on the surface of 55 Cnc e, from which a possible silicate-vapor atmosphere could have originated, we search in its transmission spectrum for absorption of various atomic and ionized species such as Fe , Fe (+), Ca , Ca (+), Mg, and K , among others. Not finding absorption for any of the investigated species, we are able to set absorption limits with a median value of 1.9 x R-P. In conclusion, we do not find evidence of a widely extended silicate envelope on this super-Earth reaching several planetary radii.},
  language  = {en}
}
@article{KramerBouriaudFeindtetal.2022,
  author    = {Kramer, Koen and Bouriaud, Laura and Feindt, Peter H. and van Wassenaer, Lan and Glanemann, Nicole and Hanewinkel, Marc and van der Heide, Martijn and Hengeveld, Geerten M. and Hoogstra, Marjanke and Ingram, Verina and Levermann, Anders and Lindner, Marcus and M{\´a}ty{\´a}s, Csaba and Mohren, Frits and Muys, Bart and Nabuurs, Gert-Jan and Palahi, Marc and Polman, Nico and Reyer, Christopher P. O. and Schulze, Ernst-Detlef and Seidl, Rupert and de Vries, Wim and Werners, Saskia E. and Winkel, Georg and Yousefpour, Rasoul},
  title     = {Perspective Roadmap to develop a stress test for forest ecosystem services supply},
  series = {One Earth},
  volume    = {5},
  journal   = {One Earth},
  number    = {1},
  publisher = {Elsevier},
  address   = {Amsterdam},
  issn      = {2590-3330},
  doi       = {10.1016/j.oneear.2021.12.009},
  pages     = {25 -- 34},
  year      = {2022},
  abstract  = {Forests play a key role in a bio-based economy by providing renewable materials, mitigating climate change, and accommodating biodiversity. However, forests experience massive increases in stresses in their ecological and socioeconomic environments, threatening forest ecosystem services supply. Alleviating those stresses is hampered by conflicting and disconnected governance arrangements, competing interests and claims, and rapid changes in technology and social demands. Identifying which stresses threaten forest ecosystem services supply and which factors hamper their alleviation requires stakeholders' perceptions. Stakeholder-oriented stress tests for the supply of forest ecosystem services are therefore necessary but are not yet available. This perspective presents a roadmap to develop a stress test tailored to multiple stakeholders' needs and demands across spatial scales. We provide the Cascade and Resilience Rosetta, with accompanying performance- and resilience indicators, as tools to facilitate development of the stress test. The application of the stress test will facilitate the transition toward a bio-based economy in which healthy and diverse forests provide sustainable and resilient ecosystem services.},
  language  = {en}
}