@article{JavanainenHammarenMonticellietal.2013, author = {Javanainen, Matti and Hammaren, Henrik and Monticelli, Luca and Jeon, Jae-Hyung and Miettinen, Markus S. and Martinez-Seara, Hector and Metzler, Ralf and Vattulainen, Ilpo}, title = {Anomalous and normal diffusion of proteins and lipids in crowded lipid membranes}, series = {Faraday discussions}, volume = {161}, journal = {Faraday discussions}, number = {1}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1359-6640}, doi = {10.1039/c2fd20085f}, pages = {397 -- 417}, year = {2013}, abstract = {Lateral diffusion plays a crucial role in numerous processes that take place in cell membranes, yet it is quite poorly understood in native membranes characterized by, e.g., domain formation and large concentration of proteins. In this article, we use atomistic and coarse-grained simulations to consider how packing of membranes and crowding with proteins affect the lateral dynamics of lipids and membrane proteins. We find that both packing and protein crowding have a profound effect on lateral diffusion, slowing it down. Anomalous diffusion is observed to be an inherent property in both protein-free and protein-rich membranes, and the time scales of anomalous diffusion and the exponent associated with anomalous diffusion are found to strongly depend on packing and crowding. Crowding with proteins also has a striking effect on the decay rate of dynamical correlations associated with lateral single-particle motion, as the transition from anomalous to normal diffusion is found to take place at macroscopic time scales: while in protein-poor conditions normal diffusion is typically observed in hundreds of nanoseconds, in protein-rich conditions the onset of normal diffusion is tens of microseconds, and in the most crowded systems as large as milliseconds. The computational challenge which results from these time scales is not easy to deal with, not even in coarse-grained simulations. We also briefly discuss the physical limits of protein motion. Our results suggest that protein concentration is anything but constant in the plane of cell membranes. Instead, it is strongly dependent on proteins' preference for aggregation.}, language = {en} } @article{SliusarenkoSurkovGoncharetal.2013, author = {Sliusarenko, O. Yu. and Surkov, D. A. and Gonchar, V. Yu. and Chechkin, Aleksei V.}, title = {Stationary states in bistable system driven by Levy noise}, series = {European physical journal special topics}, volume = {216}, journal = {European physical journal special topics}, number = {1}, publisher = {Springer}, address = {Heidelberg}, issn = {1951-6355}, doi = {10.1140/epjst/e2013-01736-0}, pages = {133 -- 138}, year = {2013}, abstract = {We study the properties of the probability density function (PDF) of a bistable system driven by heavy tailed white symmetric L,vy noise. The shape of the stationary PDF is found analytically for the particular case of the L,vy index alpha = 1 (Cauchy noise). For an arbitrary L,vy index we employ numerical methods based on the solution of the stochastic Langevin equation and space fractional kinetic equation. In contrast to the bistable system driven by Gaussian noise, in the L,vy case, the positions of maxima of the stationary PDF do not coincide with the positions of minima of the bistable potential. We provide a detailed study of the distance between the maxima and the minima as a function of the depth of the potential and the L,vy noise parameters.}, language = {en} } @article{LiBabuTurneretal.2013, author = {Li, Hongguang and Babu, Sukumaran Santhosh and Turner, Sarah T. and Neher, Dieter and Hollamby, Martin J. and Seki, Tomohiro and Yagai, Shiki and Deguchi, Yonekazu and M{\"o}hwald, Helmuth and Nakanishi, Takashi}, title = {Alkylated-C-60 based soft materials regulation of self-assembly and optoelectronic properties by chain branching}, series = {Journal of materials chemistry : C, Materials for optical and electronic devices}, volume = {1}, journal = {Journal of materials chemistry : C, Materials for optical and electronic devices}, number = {10}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {2050-7526}, doi = {10.1039/c3tc00066d}, pages = {1943 -- 1951}, year = {2013}, abstract = {Derivatization of fullerene (C-60) with branched aliphatic chains softens C-60-based materials and enables the formation of thermotropic liquid crystals and room temperature nonvolatile liquids. This work demonstrates that by carefully tuning parameters such as type, number and substituent position of the branched chains, liquid crystalline C-60 materials with mesophase temperatures suited for photovoltaic cell fabrication and room temperature nonvolatile liquid fullerenes with tunable viscosity can be obtained. In particular, compound 1, with branched chains, exhibits a smectic liquid crystalline phase extending from 84 degrees C to room temperature. Analysis of bulk heterojunction (BHJ) organic solar cells with a ca. 100 nm active layer of compound 1 and poly(3-hexylthiophene) (P3HT) as an electron acceptor and an electron donor, respectively, reveals an improved performance (power conversion efficiency, PCE: 1.6 + 0.1\%) in comparison with another compound, 10 (PCE: 0.5 + 0.1\%). The latter, in contrast to 1, carries linear aliphatic chains and thus forms a highly ordered solid lamellar phase at room temperature. The solar cell performance of 1 blended with P3HT approaches that of PCBM/P3HT for the same active layer thickness. This indicates that C-60 derivatives bearing branched tails are a promising class of electron acceptors in soft (flexible) photovoltaic devices.}, language = {en} } @article{MarwanSchinkelKurths2013, author = {Marwan, Norbert and Schinkel, Stefan and Kurths, J{\"u}rgen}, title = {Recurrence plots 25 years later -Gaining confidence in dynamical transitions}, series = {epl : a letters journal exploring the frontiers of physics}, volume = {101}, journal = {epl : a letters journal exploring the frontiers of physics}, number = {2}, publisher = {EDP Sciences}, address = {Mulhouse}, issn = {0295-5075}, doi = {10.1209/0295-5075/101/20007}, pages = {6}, year = {2013}, abstract = {Recurrence-plot-based time series analysis is widely used to study changes and transitions in the dynamics of a system or temporal deviations from its overall dynamical regime. However, most studies do not discuss the significance of the detected variations in the recurrence quantification measures. In this letter we propose a novel method to add a confidence measure to the recurrence quantification analysis. We show how this approach can be used to study significant changes in dynamical systems due to a change in control parameters, chaos-order as well as chaos-chaos transitions. Finally we study and discuss climate transitions by analysing a marine proxy record for past sea surface temperature. This paper is dedicated to the 25th anniversary of the introduction of recurrence plots.}, language = {en} } @article{MenzelHeuerPuhlmannetal.2013, author = {Menzel, Ralf and Heuer, Axel and Puhlmann, Dirk and Dechoum, K. and Hillery, M. and Spaehn, M. J. A. and Schleich, W. P.}, title = {A two-photon double-slit experiment}, series = {Journal of modern optics}, volume = {60}, journal = {Journal of modern optics}, number = {1}, publisher = {Routledge, Taylor \& Francis Group}, address = {Abingdon}, issn = {0950-0340}, doi = {10.1080/09500340.2012.746400}, pages = {86 -- 94}, year = {2013}, abstract = {We employ a photon pair created by spontaneous parametric down conversion (SPDC) where the pump laser is in the TEM01 mode to perform a Young's double-slit experiment. The signal photon illuminates the two slits and displays interference fringes in the far-field while the idler photon measured in the near-field in coincidence with the signal photon provides us with which-slit' information. We explain the results of these experiments with the help of an analytical expression for the second-order correlation function derived from an elementary model of SPDC. Our experiment emphasizes the crucial role of the mode function in the quantum theory of radiation.}, language = {en} } @article{BindschadlerNowickiAbeOuchietal.2013, author = {Bindschadler, Robert A. and Nowicki, Sophie and Abe-Ouchi, Ayako and Aschwanden, Andy and Choi, Hyeungu and Fastook, Jim and Granzow, Glen and Greve, Ralf and Gutowski, Gail and Herzfeld, Ute and Jackson, Charles and Johnson, Jesse and Khroulev, Constantine and Levermann, Anders and Lipscomb, William H. and Martin, Maria A. and Morlighem, Mathieu and Parizek, Byron R. and Pollard, David and Price, Stephen F. and Ren, Diandong and Saito, Fuyuki and Sato, Tatsuru and Seddik, Hakime and Seroussi, Helene and Takahashi, Kunio and Walker, Ryan and Wang, Wei Li}, title = {Ice-sheet model sensitivities to environmental forcing and their use in projecting future sea level (the SeaRISE project)}, series = {Journal of glaciology}, volume = {59}, journal = {Journal of glaciology}, number = {214}, publisher = {International Glaciological Society}, address = {Cambridge}, issn = {0022-1430}, doi = {10.3189/2013JoG12J125}, pages = {195 -- 224}, year = {2013}, abstract = {Ten ice-sheet models are used to study sensitivity of the Greenland and Antarctic ice sheets to prescribed changes of surface mass balance, sub-ice-shelf melting and basal sliding. Results exhibit a large range in projected contributions to sea-level change. In most cases, the ice volume above flotation lost is linearly dependent on the strength of the forcing. Combinations of forcings can be closely approximated by linearly summing the contributions from single forcing experiments, suggesting that nonlinear feedbacks are modest. Our models indicate that Greenland is more sensitive than Antarctica to likely atmospheric changes in temperature and precipitation, while Antarctica is more sensitive to increased ice-shelf basal melting. An experiment approximating the Intergovernmental Panel on Climate Change's RCP8.5 scenario produces additional first-century contributions to sea level of 22.3 and 8.1 cm from Greenland and Antarctica, respectively, with a range among models of 62 and 14 cm, respectively. By 200 years, projections increase to 53.2 and 26.7 cm, respectively, with ranges of 79 and 43 cm. Linear interpolation of the sensitivity results closely approximates these projections, revealing the relative contributions of the individual forcings on the combined volume change and suggesting that total ice-sheet response to complicated forcings over 200 years can be linearized.}, language = {en} } @article{PattynPerichonDurandetal.2013, author = {Pattyn, Frank and Perichon, Laura and Durand, Gael and Favier, Lionel and Gagliardini, Olivier and Hindmarsh, Richard C. A. and Zwinger, Thomas and Albrecht, Torsten and Cornford, Stephen and Docquier, David and Furst, Johannes J. and Goldberg, Daniel and Gudmundsson, Gudmundur Hilmar and Humbert, Angelika and Huetten, Moritz and Huybrechts, Philippe and Jouvet, Guillaume and Kleiner, Thomas and Larour, Eric and Martin, Daniel and Morlighem, Mathieu and Payne, Anthony J. and Pollard, David and Rueckamp, Martin and Rybak, Oleg and Seroussi, Helene and Thoma, Malte and Wilkens, Nina}, title = {Grounding-line migration in plan-view marine ice-sheet models: results of the ice2sea MISMIP3d intercomparison}, series = {Journal of glaciology}, volume = {59}, journal = {Journal of glaciology}, number = {215}, publisher = {International Glaciological Society}, address = {Cambridge}, issn = {0022-1430}, doi = {10.3189/2013JoG12J129}, pages = {410 -- 422}, year = {2013}, abstract = {Predictions of marine ice-sheet behaviour require models able to simulate grounding-line migration. We present results of an intercomparison experiment for plan-view marine ice-sheet models. Verification is effected by comparison with approximate analytical solutions for flux across the grounding line using simplified geometrical configurations (no lateral variations, no buttressing effects from lateral drag). Perturbation experiments specifying spatial variation in basal sliding parameters permitted the evolution of curved grounding lines, generating buttressing effects. The experiments showed regions of compression and extensional flow across the grounding line, thereby invalidating the boundary layer theory. Steady-state grounding-line positions were found to be dependent on the level of physical model approximation. Resolving grounding lines requires inclusion of membrane stresses, a sufficiently small grid size (<500 m), or subgrid interpolation of the grounding line. The latter still requires nominal grid sizes of <5 km. For larger grid spacings, appropriate parameterizations for ice flux may be imposed at the grounding line, but the short-time transient behaviour is then incorrect and different from models that do not incorporate grounding-line parameterizations. The numerical error associated with predicting grounding-line motion can be reduced significantly below the errors associated with parameter ignorance and uncertainties in future scenarios.}, language = {en} } @article{SchleussnerFeulner2013, author = {Schleussner, Carl-Friedrich and Feulner, G.}, title = {A volcanically triggered regime shift in the subpolar North Atlantic Ocean as a possible origin of the Little Ice Age}, series = {Climate of the past : an interactive open access journal of the European Geosciences Union}, volume = {9}, journal = {Climate of the past : an interactive open access journal of the European Geosciences Union}, number = {3}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1814-9324}, doi = {10.5194/cp-9-1321-2013}, pages = {1321 -- 1330}, year = {2013}, abstract = {Among the climatological events of the last millennium, the Northern Hemisphere Medieval Climate Anomaly succeeded by the Little Ice Age are of exceptional importance. The origin of these regional climate anomalies remains a subject of debate and besides external influences like solar and volcanic activity, internal dynamics of the climate system might have also played a dominant role. Here, we present transient last millennium simulations of the fully coupled model of intermediate complexity Climber 3a forced with stochastically reconstructed wind-stress fields. Our results indicate that short-lived volcanic eruptions might have triggered a cascade of sea ice ocean feedbacks in the North Atlantic, ultimately leading to a persistent regime shift in the ocean circulation. We find that an increase in the Nordic Sea sea-ice extent on decadal timescales as a consequence of major volcanic eruptions in our model leads to a spin-up of the subpolar gyre and a weakened Atlantic meridional overturning circulation, eventually causing a persistent, basin-wide cooling. These results highlight the importance of regional climate feedbacks such as a regime shift in the subpolar gyre circulation for understanding the dynamics of past and future climate.}, language = {en} } @article{InalKoelschChiappisietal.2013, author = {Inal, Sahika and Koelsch, Jonas D. and Chiappisi, Leonardo and Janietz, Dietmar and Gradzielski, Michael and Laschewsky, Andr{\´e} and Neher, Dieter}, title = {Structure-related differences in the temperature-regulated fluorescence response of LCST type polymers}, series = {Journal of materials chemistry : C, Materials for optical and electronic devices}, volume = {1}, journal = {Journal of materials chemistry : C, Materials for optical and electronic devices}, number = {40}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {2050-7526}, doi = {10.1039/c3tc31304b}, pages = {6603 -- 6612}, year = {2013}, abstract = {We demonstrate new fluorophore-labelled materials based on acrylamide and on oligo(ethylene glycol) (OEG) bearing thermoresponsive polymers for sensing purposes and investigate their thermally induced solubility transitions. It is found that the emission properties of the polarity-sensitive (solvatochromic) naphthalimide derivative attached to three different thermoresponsive polymers are highly specific to the exact chemical structure of the macromolecule. While the dye emits very weakly below the LCST when incorporated into poly(N-isopropylacrylamide) (pNIPAm) or into a polyacrylate backbone bearing only short OEG side chains, it is strongly emissive in polymethacrylates with longer OEG side chains. Heating of the aqueous solutions above their cloud point provokes an abrupt increase of the fluorescence intensity of the labelled pNIPAm, whereas the emission properties of the dye are rather unaffected as OEG-based polyacrylates and methacrylates undergo phase transition. Correlated with laser light scattering studies, these findings are ascribed to the different degrees of pre-aggregation of the chains at low temperatures and to the extent of dehydration that the phase transition evokes. It is concluded that although the temperature-triggered changes in the macroscopic absorption characteristics, related to large-scale alterations of the polymer chain conformation and aggregation, are well detectable and similar for these LCST-type polymers, the micro-environment provided to the dye within each polymer network differs substantially. Considering sensing applications, this finding is of great importance since the temperature-regulated fluorescence response of the polymer depends more on the macromolecular architecture than the type of reporter fluorophore.}, language = {en} } @article{NishikawaHardeeZhangetal.2013, author = {Nishikawa, Ken-Ichi and Hardee, P. and Zhang, B. and Dutan, I. and Medvedev, M. and Choi, E. J. and Min, K. W. and Niemiec, J. and Mizuno, Y. and Nordlund, Ake and Frederiksen, Jacob Trier and Sol, H. and Pohl, Martin and Hartmann, D. H.}, title = {Magnetic field generation in a jet-sheath plasma via the kinetic Kelvin-Helmholtz instability}, series = {Annales geophysicae}, volume = {31}, journal = {Annales geophysicae}, number = {9}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {0992-7689}, doi = {10.5194/angeo-31-1535-2013}, pages = {1535 -- 1541}, year = {2013}, abstract = {We have investigated the generation of magnetic fields associated with velocity shear between an unmagnetized relativistic jet and an unmagnetized sheath plasma. We have examined the strong magnetic fields generated by kinetic shear (Kelvin-Helmholtz) instabilities. Compared to the previous studies using counter-streaming performed by Alves et al. (2012), the structure of the kinetic Kelvin-Helmholtz instability (KKHI) of our jet-sheath configuration is slightly different, even for the global evolution of the strong transverse magnetic field. In our simulations the major components of growing modes are the electric field E-z, perpendicular to the flow boundary, and the magnetic field B-y, transverse to the flow direction. After the B-y component is excited, an induced electric field E-x, parallel to the flow direction, becomes significant. However, other field components remain small. We find that the structure and growth rate of KKHI with mass ratios m(i)/m(e) = 1836 and m(i)/m(e) = 20 are similar. In our simulations in the nonlinear stage is not as clear as in counter-streaming cases. The growth rate for a mildly-relativistic jet case (gamma(j) = 1.5) is larger than for a relativistic jet case (gamma(j) = 15).}, language = {en} }