@phdthesis{Mauri2014,
  author    = {Mauri, Marco},
  title     = {A model for sigma factor competition in bacterial cells},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-72098},
  school      = {Universit{\"a}t Potsdam},
  pages     = {167},
  year      = {2014},
  abstract  = {Bacteria respond to changing environmental conditions by switching the global pattern of expressed genes. In response to specific environmental stresses the cell activates several stress-specific molecules such as sigma factors. They reversibly bind the RNA polymerase to form the so-called holoenzyme and direct it towards the appropriate stress response genes. In exponentially growing E. coli cells, the majority of the transcriptional activity is carried out by the housekeeping sigma factor, while stress responses are often under the control of alternative sigma factors. Different sigma factors compete for binding to a limited pool of RNA polymerase (RNAP) core enzymes, providing a mechanism for cross talk between genes or gene classes via the sharing of expression machinery. To quantitatively analyze the contribution of sigma factor competition to global changes in gene expression, we develop a thermodynamic model that describes binding between sigma factors and core RNAP at equilibrium, transcription, non-specific binding to DNA and the modulation of the availability of the molecular components. Association of housekeeping sigma factor to RNAP is generally favored by its abundance and higher binding affinity to the core. In order to promote transcription by alternative sigma subunits, the bacterial cell modulates the transcriptional efficiency in a reversible manner through several strategies such as anti-sigma factors, 6S RNA and generally any kind of transcriptional regulators (e.g. activators or inhibitors). By shifting the outcome of sigma factor competition for the core, these modulators bias the transcriptional program of the cell. The model is validated by comparison with in vitro competition experiments, with which excellent agreement is found. We observe that transcription is affected via the modulation of the concentrations of the different types of holoenzymes, so saturated promoters are only weakly affected by sigma factor competition. However, in case of overlapping promoters or promoters recognized by two types of sigma factors, we find that even saturated promoters are strongly affected. Active transcription effectively lowers the affinity between the sigma factor driving it and the core RNAP, resulting in complex cross talk effects and raising the question of how their in vitro measure is relevant in the cell. We also estimate that sigma factor competition is not strongly affected by non-specific binding of core RNAPs, sigma factors, and holoenzymes to DNA. Finally, we analyze the role of increased core RNAP availability upon the shut-down of ribosomal RNA transcription during stringent response. We find that passive up-regulation of alternative sigma-dependent transcription is not only possible, but also displays hypersensitivity based on the sigma factor competition. Our theoretical analysis thus provides support for a significant role of passive control during that global switch of the gene expression program and gives new insights into RNAP partitioning in the cell.},
  language  = {en}
}
@phdthesis{D'Agata2014,
  author    = {D'Agata, Valeria Costanza},
  title     = {A partire dalla Somaestetica di Shusterman},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-72650},
  school      = {Universit{\"a}t Potsdam},
  pages     = {280},
  year      = {2014},
  abstract  = {Con la sua proposta di una Somaestetica, articolata fondamentalmente in analitica, pragmatica e pratica, Richard Shusterman intende in primo luogo fornire e creare una cornice metodologica, un orientamento unitario che sia in grado di rintracciare, ricostruire e portare a manifestazione - all'interno di eterogenee riflessioni teoriche e pratiche somatiche - la comune esigenza di ridare luce alla dimensione corporea come modo primario di essere nel mondo. Recuperando l'accezione baumgarteniana di Aesthetica come gnoseologia inferiore, arte dell'analogo della ragione, scienza della conoscenza sensibile, la somaestetica intende dare nuovo impulso alla pi{\`u} profonda radice di estetica e filosofia che coglie la vita nel suo processo di metamorfosi e rigenerazione continua, in quel respiro vitale che, per quanto possa diventare cosciente, non {\`e} mai totalmente afferrabile dalla ragione discorsiva, situandosi piuttosto in quello spazio primordiale in cui coscienza e corpo si coappartengono, in cui il soggetto non {\`e} ancora individualizzabile perch{\´e} fuso con l'ambiente, non {\`e} totalmente privatizzabile perch{\´e} intrinsecamente plasmato dal tessuto sociale cui egli stesso conferisce dinamicamente forma. A partire dunque dalla rivalutazione del concetto di Aisthesis la disciplina somaestetica mira ad una intensificazione di sensorialit{\`a}, percezione, emozione, commozione, rintracciando proprio nel Soma la fonte di quelle facolt{\`a} "inferiori" irriducibili a quelle puramente intellettuali, che permettono di accedere alle dimensioni qualitative dell'esperienza, di portare a manifestazione e far maturare l'essere umano come essere indivisibile che non si lascia incontrare da un pensiero che ne rinnega l'unitariet{\`a} in nome di fittizie e laceranti distinzioni dicotomiche. Nel corpo infatti si radicano in modo silente regole, convenzioni, norme e valori socioculturali che determinano e talvolta limitano la configurazione ed espressione di sensazioni, percezioni, cognizioni, pensieri, azioni, volizioni, disposizioni di un soggetto da sempre inserito in una Mitwelt (mondo comune), ed {\`e} allora proprio al corpo che bisogna rivolgersi per riconfigurare pi{\`u} autentiche modalit{\`a} di espressione del soggetto che crea equilibri dinamici per mantenere una relazione di coerenza con il pi{\`u} ampio contesto sociale, culturale, ambientale. L'apertura al confronto con eterogenee posizioni filosofiche e l'intrinseca multidisciplinariet{\`a} spiegano la centralit{\`a} nel contemporaneo dibattito estetologico internazionale della Somaestetica che, rivolgendosi tanto ad una formulazione teorica quanto ad una concreta applicazione pratica, intende rivalutare il soma come corporeit{\`a} intelligente, senziente, intenzionale e attiva, non riducibile all'accezione peccaminosa di caro (mero corpo fisico privo di vita e sensazione). Attraverso la riflessione e la pratica di tecniche di coscienza somatica si portano in primo piano i modi in cui il sempre pi{\`u} consapevole rapporto con la propria corporeit{\`a} come mediatamente esperita e immediatamente vissuta, sentita, offre occasioni autentiche di realizzazione progressiva di s{\´e} innanzitutto come persone, capaci di autocoltivazione, di riflessione cosciente sulle proprie abitudini incorporate, di ristrutturazione creativa di s{\´e}, di intensificata percezione e apprezzamento sensoriale sia nel concreto agire quotidiano, sia nella dimensione pi{\`u} propriamente estetologica di ricezione, fruizione e creazione artistica. L'indirizzo essenzialmente pragmatista della riflessione di Shusterman traccia cos{\`i} una concezione fondamentalmente relazionale dell'estetica in grado di porsi proprio nel movimento e nel rapporto continuamente diveniente di vera e propria trasformazione e passaggio tra le dimensioni fisiche, proprio-corporee, psichiche e spirituali del soggetto la cui interazione, ed il cui reciproco riversarsi le une nelle altre, pu{\`o} risultare profondamente arricchito attraverso una progressiva e sempre crescente consapevolizzazione della ricchezza della dimensione corporea in quanto intenzionale, percettiva, senziente, volitiva, tanto quanto vulnerabile, limitante, caduca, patica. Il presente lavoro intende ripercorrere ed approfondire alcuni dei principali referenti di Shusterman, focalizzandosi prevalentemente sulla radice pragmatista della sua proposta e sul confronto con il dibattito di area tedesca tra estetica, antropologia filosofica, neofenomenologia e antropologia medica, per riguadagnare una nozione di soma che proprio a partire dal contrasto, dall'impatto irriducibile con la potenza annullante delle situazioni limite, della crisi possa acquisire un pi{\`u} complesso e ricco valore armonizzante delle intrinseche e molteplici dimensioni che costituiscono il tessuto della soggettivit{\`a} incarnata. In particolare il primo capitolo (1. Somaestetica) chiarisce le radici essenzialmente pragmatiste della proposta shustermaniana e mostra come sia possibile destrutturare e dunque riconfigurare radicati modi di esperienza, rendendo coscienti abitudini e modi di vivere che si fissano a livello somatico in modo per lo pi{\`u} inavvertito. Il confronto con la nozione di Habitus, di cui Pierre Bourdieu mette brillantemente in luce l'invisibile e socialmente determinata matrice somatica, lascia scorgere come ogni manifestazione umana sia sostenuta dall'incorporazione di norme, credenze, valori che determinano e talvolta limitano l'espressione, lo sviluppo, persino le predisposizioni e le inclinazioni degli individui. Ed {\`e} proprio intervenendo a questo livello che si pu{\`o} restituire libert{\`a} alle scelte e aprirsi cos{\`i} alle dimensioni essenzialmente qualitative dell'esperienza che, nell'accezione deweyana {\`e} un insieme olistico unitario e coeso che fa da sfondo alle relazioni organismo-ambiente, un intreccio inestricabile di teoria e prassi, particolare e universale, psiche e soma, ragione ed emozione, percettivo e concettuale, insomma quell'immediata conoscenza corporea che struttura lo sfondo di manifestazione della coscienza.},
  language  = {it}
}
@phdthesis{Schmidt2014,
  author    = {Schmidt, Lukas},
  title     = {Aerosols and boundary layer structure over Arctic sea ice based on airborne lidar and dropsonde measurements},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-75076},
  school      = {Universit{\"a}t Potsdam},
  pages     = {vii, 98, xiii},
  year      = {2014},
  abstract  = {The atmosphere over the Arctic Ocean is strongly influenced by the distribution of sea ice and open water. Leads in the sea ice produce strong convective fluxes of sensible and latent heat and release aerosol particles into the atmosphere. They increase the occurrence of clouds and modify the structure and characteristics of the atmospheric boundary layer (ABL) and thereby influence the Arctic climate. In the course of this study aircraft measurements were performed over the western Arctic Ocean as part of the campaign PAMARCMIP 2012 of the Alfred Wegener Institute for Polar and Marine Research (AWI). Backscatter from aerosols and clouds within the lower troposphere and the ABL were measured with the nadir pointing Airborne Mobile Aerosol Lidar (AMALi) and dropsondes were launched to obtain profiles of meteorological variables. Furthermore, in situ measurements of aerosol properties, meteorological variables and turbulence were part of the campaign. The measurements covered a broad range of atmospheric and sea ice conditions. In this thesis, properties of the ABL over Arctic sea ice with a focus on the influence of open leads are studied based on the data from the PAMARCMIP campaign. The height of the ABL is determined by different methods that are applied to dropsonde and AMALi backscatter profiles. ABL heights are compared for different flights representing different conditions of the atmosphere and of sea ice and open water influence. The different criteria for ABL height that are applied show large variation in terms of agreement among each other, depending on the characteristics of the ABL and its history. It is shown that ABL height determination from lidar backscatter by methods commonly used under mid-latitude conditions is applicable to the Arctic ABL only under certain conditions. Aerosol or clouds within the ABL are needed as a tracer for ABL height detection from backscatter. Hence an aerosol source close to the surface is necessary, that is typically found under the present influence of open water and therefore convective conditions. However it is not always possible to distinguish residual layers from the actual ABL. Stable boundary layers are generally difficult to detect. To illustrate the complexity of the Arctic ABL and processes therein, four case studies are analyzed each of which represents a snapshot of the interplay between atmosphere and underlying sea ice or water surface. Influences of leads and open water on the aerosol and clouds within the ABL are identified and discussed. Leads are observed to cause the formation of fog and cloud layers within the ABL by humidity emission. Furthermore they decrease the stability and increase the height of the ABL and consequently facilitate entrainment of air and aerosol layers from the free troposphere.},
  language  = {en}
}
@phdthesis{Lindauer2014,
  author    = {Lindauer, T. Marius},
  title     = {Algorithm selection, scheduling and configuration of Boolean constraint solvers},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-71260},
  school      = {Universit{\"a}t Potsdam},
  pages     = {ii, 130},
  year      = {2014},
  abstract  = {Boolean constraint solving technology has made tremendous progress over the last decade, leading to industrial-strength solvers, for example, in the areas of answer set programming (ASP), the constraint satisfaction problem (CSP), propositional satisfiability (SAT) and satisfiability of quantified Boolean formulas (QBF). However, in all these areas, there exist multiple solving strategies that work well on different applications; no strategy dominates all other strategies. Therefore, no individual solver shows robust state-of-the-art performance in all kinds of applications. Additionally, the question arises how to choose a well-performing solving strategy for a given application; this is a challenging question even for solver and domain experts. One way to address this issue is the use of portfolio solvers, that is, a set of different solvers or solver configurations. We present three new automatic portfolio methods: (i) automatic construction of parallel portfolio solvers (ACPP) via algorithm configuration,(ii) solving the \$NP\$-hard problem of finding effective algorithm schedules with Answer Set Programming (aspeed), and (iii) a flexible algorithm selection framework (claspfolio2) allowing for fair comparison of different selection approaches. All three methods show improved performance and robustness in comparison to individual solvers on heterogeneous instance sets from many different applications. Since parallel solvers are important to effectively solve hard problems on parallel computation systems (e.g., multi-core processors), we extend all three approaches to be effectively applicable in parallel settings. We conducted extensive experimental studies different instance sets from ASP, CSP, MAXSAT, Operation Research (OR), SAT and QBF that indicate an improvement in the state-of-the-art solving heterogeneous instance sets. Last but not least, from our experimental studies, we deduce practical advice regarding the question when to apply which of our methods.},
  language  = {en}
}
@phdthesis{Bathke2014,
  author    = {Bathke, Hannes},
  title     = {An investigation of complex deformation patterns detected by using InSAR at Llaima and Tend{\"u}rek volcanoes},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70522},
  school      = {Universit{\"a}t Potsdam},
  year      = {2014},
  abstract  = {Surface displacement at volcanic edifices is related to subsurface processes associated with magma movements, fluid transfers within the volcano edifice and gravity-driven deformation processes. Understanding of associated ground displacements is of importance for assessment of volcanic hazards. For example, volcanic unrest is often preceded by surface uplift, caused by magma intrusion and followed by subsidence, after the withdrawal of magma. Continuous monitoring of the surface displacement at volcanoes therefore might allow the forecasting of upcoming eruptions to some extent. In geophysics, the measured surface displacements allow the parameters of possible deformation sources to be estimated through analytical or numerical modeling. This is one way to improve the understanding of subsurface processes acting at volcanoes. Although the monitoring of volcanoes has significantly improved in the last decades (in terms of technical advancements and number of monitored volcanoes), the forecasting of volcanic eruptions remains puzzling. In this work I contribute towards the understanding of the subsurface processes at volcanoes and thus to the improvement of volcano eruption forecasting. I have investigated the displacement field of Llaima volcano in Chile and of Tend{\"u}rek volcano in East Turkey by using synthetic aperture radar interferometry (InSAR). Through modeling of the deformation sources with the extracted displacement data, it was possible to gain insights into potential subsurface processes occurring at these two volcanoes that had been barely studied before. The two volcanoes, although of very different origin, composition and geometry, both show a complexity of interacting deformation sources. At Llaima volcano, the InSAR technique was difficult to apply, due to the large decorrelation of the radar signal between the acquisition of images. I developed a model-based unwrapping scheme, which allows the production of reliable displacement maps at the volcano that I used for deformation source modeling. The modeling results show significant differences in pre- and post-eruptive magmatic deformation source parameters. Therefore, I conjecture that two magma chambers exist below Llaima volcano: a post-eruptive deep one and a shallow one possibly due to the pre-eruptive ascent of magma. Similar reservoir depths at Llaima have been confirmed by independent petrologic studies. These reservoirs are interpreted to be temporally coupled. At Tend{\"u}rek volcano I have found long-term subsidence of the volcanic edifice, which can be described by a large, magmatic, sill-like source that is subject to cooling contraction. The displacement data in conjunction with high-resolution optical images, however, reveal arcuate fractures at the eastern and western flank of the volcano. These are most likely the surface expressions of concentric ring-faults around the volcanic edifice that show low magnitudes of slip over a long time. This might be an alternative mechanism for the development of large caldera structures, which are so far assumed to be generated during large catastrophic collapse events. To investigate the potential subsurface geometry and relation of the two proposed interacting sources at Tend{\"u}rek, a sill-like magmatic source and ring-faults, I have performed a more sophisticated numerical modeling approach. The optimum source geometries show, that the size of the sill-like source was overestimated in the simple models and that it is difficult to determine the dip angle of the ring-faults with surface displacement data only. However, considering physical and geological criteria a combination of outward-dipping reverse faults in the west and inward-dipping normal faults in the east seem to be the most likely. Consequently, the underground structure at the Tend{\"u}rek volcano consists of a small, sill-like, contracting, magmatic source below the western summit crater that causes a trapdoor-like faulting along the ring-faults around the volcanic edifice. Therefore, the magmatic source and the ring-faults are also interpreted to be temporally coupled. In addition, a method for data reduction has been improved. The modeling of subsurface deformation sources requires only a relatively small number of well distributed InSAR observations at the earth's surface. Satellite radar images, however, consist of several millions of these observations. Therefore, the large amount of data needs to be reduced by several orders of magnitude for source modeling, to save computation time and increase model flexibility. I have introduced a model-based subsampling approach in particular for heterogeneously-distributed observations. It allows a fast calculation of the data error variance-covariance matrix, also supports the modeling of time dependent displacement data and is, therefore, an alternative to existing methods.},
  language  = {en}
}
@phdthesis{Girbig2014,
  author    = {Girbig, Dorothee},
  title     = {Analysing concerted criteria for local dynamic properties of metabolic systems},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72017},
  school      = {Universit{\"a}t Potsdam},
  year      = {2014},
  abstract  = {Metabolic systems tend to exhibit steady states that can be measured in terms of their concentrations and fluxes. These measurements can be regarded as a phenotypic representation of all the complex interactions and regulatory mechanisms taking place in the underlying metabolic network. Such interactions determine the system's response to external perturbations and are responsible, for example, for its asymptotic stability or for oscillatory trajectories around the steady state. However, determining these perturbation responses in the absence of fully specified kinetic models remains an important challenge of computational systems biology. Structural kinetic modeling (SKM) is a framework to analyse whether a metabolic steady state remains stable under perturbation, without requiring detailed knowledge about individual rate equations. It provides a parameterised representation of the system's Jacobian matrix in which the model parameters encode information about the enzyme-metabolite interactions. Stability criteria can be derived by generating a large number of structural kinetic models (SK-models) with randomly sampled parameter sets and evaluating the resulting Jacobian matrices. The parameter space can be analysed statistically in order to detect network positions that contribute significantly to the perturbation response. Because the sampled parameters are equivalent to the elasticities used in metabolic control analysis (MCA), the results are easy to interpret biologically. In this project, the SKM framework was extended by several novel methodological improvements. These improvements were evaluated in a simulation study using a set of small example pathways with simple Michaelis Menten rate laws. Afterwards, a detailed analysis of the dynamic properties of the neuronal TCA cycle was performed in order to demonstrate how the new insights obtained in this work could be used for the study of complex metabolic systems. The first improvement was achieved by examining the biological feasibility of the elasticity combinations created during Monte Carlo sampling. Using a set of small example systems, the findings showed that the majority of sampled SK-models would yield negative kinetic parameters if they were translated back into kinetic models. To overcome this problem, a simple criterion was formulated that mitigates such infeasible models and the application of this criterion changed the conclusions of the SKM experiment. The second improvement of this work was the application of supervised machine-learning approaches in order to analyse SKM experiments. So far, SKM experiments have focused on the detection of individual enzymes to identify single reactions important for maintaining the stability or oscillatory trajectories. In this work, this approach was extended by demonstrating how SKM enables the detection of ensembles of enzymes or metabolites that act together in an orchestrated manner to coordinate the pathways response to perturbations. In doing so, stable and unstable states served as class labels, and classifiers were trained to detect elasticity regions associated with stability and instability. Classification was performed using decision trees and relevance vector machines (RVMs). The decision trees produced good classification accuracy in terms of model bias and generalizability. RVMs outperformed decision trees when applied to small models, but encountered severe problems when applied to larger systems because of their high runtime requirements. The decision tree rulesets were analysed statistically and individually in order to explore the role of individual enzymes or metabolites in controlling the system's trajectories around steady states. The third improvement of this work was the establishment of a relationship between the SKM framework and the related field of MCA. In particular, it was shown how the sampled elasticities could be converted to flux control coefficients, which were then investigated for their predictive information content in classifier training. After evaluation on the small example pathways, the methodology was used to study two steady states of the neuronal TCA cycle with respect to their intrinsic mechanisms responsible for stability or instability. The findings showed that several elasticities were jointly coordinated to control stability and that the main source for potential instabilities were mutations in the enzyme alpha-ketoglutarate dehydrogenase.},
  language  = {en}
}
@phdthesis{Wilde2014,
  author    = {Wilde, Anja},
  title     = {Auspr{\"a}gungen r{\"a}umlicher Identit{\"a}t in ehemaligen sudetendeutschen Gebieten der Tschechischen Republik},
  publisher = {Universit{\"a}tsverlag Potsdam},
  address   = {Potsdam},
  isbn      = {978-3-86956-311-4},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-70247},
  school      = {Universit{\"a}t Potsdam},
  pages     = {XVI, 395},
  year      = {2014},
  abstract  = {Das tschechische Grenzgebiet ist eine der Regionen in Europa, die in der Folge des Zweiten Weltkrieges am gravierendsten von Umbr{\"u}chen in der zuvor bestehenden Bev{\"o}lkerungsstruktur betroffen waren. Der erzwungenen Aussiedlung eines Großteils der ans{\"a}ssigen Bev{\"o}lkerung folgten die Neubesiedlung durch verschiedenste Zuwanderergruppen sowie teilweise langanhaltende Fluktuationen der Einwohnerschaft. Die Stabilisierung der Bev{\"o}lkerung stand sodann unter dem Zeichen der sozialistischen Gesellschafts- und Wirtschaftsordnung, die die Lebensweise und Raumwahrnehmung der neuen Einwohner nachhaltig pr{\"a}gte. Die Grenz{\"o}ffnung von 1989, die politische Transformation sowie die Integration der Tschechischen Republik in die Europ{\"a}ische Union brachten neue demographische und sozio{\"o}konomische Entwicklungen mit sich. Sie schufen aber auch die Bedingungen daf{\"u}r, sich neu und offen auch mit der spezifischen Geschichte des ehemaligen Sudetenlandes sowie mit dem Zustand der gegenw{\"a}rtigen Gesellschaft in diesem Gebiet auseinanderzusetzen. Im Rahmen der vorliegenden Arbeit wird anhand zweier Beispielregionen untersucht, welche Raumvorstellungen und Raumbindungen bei der heute in den ehemaligen sudetendeutschen Gebieten ans{\"a}ssigen Bev{\"o}lkerung vorhanden sind und welche Einfl{\"u}sse die unterschiedlichen raumstrukturellen Bedingungen darauf aus{\"u}ben. Besonderes Augenmerk wird auf die soziale Komponente der Auspr{\"a}gung r{\"a}umlicher Identit{\"a}t gelegt, das heißt auf die Rolle von Bedeutungszuweisungen gegen{\"u}ber Raumelementen im Rahmen sozialer Kommunikation und Interaktion. Dies erscheint von besonderer Relevanz in einem Raum, der sich durch eine gewisse Heterogenit{\"a}t seiner Einwohnerschaft hinsichtlich ihres ethnischen, kulturellen beziehungsweise biographischen Hintergrundes auszeichnet. Schließlich wird ermittelt, welche Impulse unter Umst{\"a}nden von einer ausgepr{\"a}gten r{\"a}umlichen Identit{\"a}t f{\"u}r die Entwicklung des Raumes ausgehen.},
  language  = {de}
}
@phdthesis{Grigoli2014,
  author    = {Grigoli, Francesco},
  title     = {Automated seismic event location by waveform coherence analysis},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70329},
  school      = {Universit{\"a}t Potsdam},
  year      = {2014},
  abstract  = {Automated location of seismic events is a very important task in microseismic monitoring operations as well for local and regional seismic monitoring. Since microseismic records are generally characterised by low signal-to-noise ratio, such methods are requested to be noise robust and sufficiently accurate. Most of the standard automated location routines are based on the automated picking, identification and association of the first arrivals of P and S waves and on the minimization of the residuals between theoretical and observed arrival times of the considered seismic phases. Although current methods can accurately pick P onsets, the automatic picking of the S onset is still problematic, especially when the P coda overlaps the S wave onset. In this thesis I developed a picking free automated method based on the Short-Term-Average/Long-Term-Average (STA/LTA) traces at different stations as observed data. I used the STA/LTA of several characteristic functions in order to increase the sensitiveness to the P wave and the S waves. For the P phases we use the STA/LTA traces of the vertical energy function, while for the S phases, we use the STA/LTA traces of the horizontal energy trace and then a more optimized characteristic function which is obtained using the principal component analysis technique. The orientation of the horizontal components can be retrieved by robust and linear approach of waveform comparison between stations within a network using seismic sources outside the network (chapter 2). To locate the seismic event, we scan the space of possible hypocentral locations and origin times, and stack the STA/LTA traces along the theoretical arrival time surface for both P and S phases. Iterating this procedure on a three-dimensional grid we retrieve a multidimensional matrix whose absolute maximum corresponds to the spatial and temporal coordinates of the seismic event. Location uncertainties are then estimated by perturbing the STA/LTA parameters (i.e the length of both long and short time windows) and relocating each event several times. In order to test the location method I firstly applied it to a set of 200 synthetic events. Then we applied it to two different real datasets. A first one related to mining induced microseismicity in a coal mine in the northern Germany (chapter 3). In this case we successfully located 391 microseismic event with magnitude range between 0.5 and 2.0 Ml. To further validate the location method I compared the retrieved locations with those obtained by manual picking procedure. The second dataset consist in a pilot application performed in the Campania-Lucania region (southern Italy) using a 33 stations seismic network (Irpinia Seismic Network) with an aperture of about 150 km (chapter 4). We located 196 crustal earthquakes (depth < 20 km) with magnitude range 1.1 < Ml < 2.7. A subset of these locations were compared with accurate locations retrieved by a manual location procedure based on the use of a double difference technique. In both cases results indicate good agreement with manual locations. Moreover, the waveform stacking location method results noise robust and performs better than classical location methods based on the automatic picking of the P and S waves first arrivals.},
  language  = {en}
}
@phdthesis{Schipper2014,
  author    = {Schipper, Florian},
  title     = {Biomass derived carbon for new energy storage technologies},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72045},
  school      = {Universit{\"a}t Potsdam},
  year      = {2014},
  abstract  = {The thesis deals with the production and evaluation of porous carbon materials for energy storage technologies, namely super capacitors and lithium sulfur batteries.},
  language  = {de}
}
@phdthesis{Tinnefeld2014,
  author    = {Tinnefeld, Christian},
  title     = {Building a columnar database on shared main memory-based storage},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-72063},
  school      = {Universit{\"a}t Potsdam},
  pages     = {175},
  year      = {2014},
  abstract  = {In the field of disk-based parallel database management systems exists a great variety of solutions based on a shared-storage or a shared-nothing architecture. In contrast, main memory-based parallel database management systems are dominated solely by the shared-nothing approach as it preserves the in-memory performance advantage by processing data locally on each server. We argue that this unilateral development is going to cease due to the combination of the following three trends: a) Nowadays network technology features remote direct memory access (RDMA) and narrows the performance gap between accessing main memory inside a server and of a remote server to and even below a single order of magnitude. b) Modern storage systems scale gracefully, are elastic, and provide high-availability. c) A modern storage system such as Stanford's RAMCloud even keeps all data resident in main memory. Exploiting these characteristics in the context of a main-memory parallel database management system is desirable. The advent of RDMA-enabled network technology makes the creation of a parallel main memory DBMS based on a shared-storage approach feasible. This thesis describes building a columnar database on shared main memory-based storage. The thesis discusses the resulting architecture (Part I), the implications on query processing (Part II), and presents an evaluation of the resulting solution in terms of performance, high-availability, and elasticity (Part III). In our architecture, we use Stanford's RAMCloud as shared-storage, and the self-designed and developed in-memory AnalyticsDB as relational query processor on top. AnalyticsDB encapsulates data access and operator execution via an interface which allows seamless switching between local and remote main memory, while RAMCloud provides not only storage capacity, but also processing power. Combining both aspects allows pushing-down the execution of database operators into the storage system. We describe how the columnar data processed by AnalyticsDB is mapped to RAMCloud's key-value data model and how the performance advantages of columnar data storage can be preserved. The combination of fast network technology and the possibility to execute database operators in the storage system opens the discussion for site selection. We construct a system model that allows the estimation of operator execution costs in terms of network transfer, data processed in memory, and wall time. This can be used for database operators that work on one relation at a time - such as a scan or materialize operation - to discuss the site selection problem (data pull vs. operator push). Since a database query translates to the execution of several database operators, it is possible that the optimal site selection varies per operator. For the execution of a database operator that works on two (or more) relations at a time, such as a join, the system model is enriched by additional factors such as the chosen algorithm (e.g. Grace- vs. Distributed Block Nested Loop Join vs. Cyclo-Join), the data partitioning of the respective relations, and their overlapping as well as the allowed resource allocation. We present an evaluation on a cluster with 60 nodes where all nodes are connected via RDMA-enabled network equipment. We show that query processing performance is about 2.4x slower if everything is done via the data pull operator execution strategy (i.e. RAMCloud is being used only for data access) and about 27\% slower if operator execution is also supported inside RAMCloud (in comparison to operating only on main memory inside a server without any network communication at all). The fast-crash recovery feature of RAMCloud can be leveraged to provide high-availability, e.g. a server crash during query execution only delays the query response for about one second. Our solution is elastic in a way that it can adapt to changing workloads a) within seconds, b) without interruption of the ongoing query processing, and c) without manual intervention.},
  language  = {en}
}