@phdthesis{Kiemel2023, author = {Kiemel, Katrin}, title = {Zooplankton adaptations and community dynamics in space and time}, school = {Universit{\"a}t Potsdam}, year = {2023}, abstract = {In times of ongoing biodiversity loss, understanding how communities are structured and what mechanisms and local adaptations underlie the patterns we observe in nature is crucial for predicting how future ecological and anthropogenic changes might affect local and regional biodiversity. Aquatic zooplankton are a group of primary consumers that represent a critical link in the food chain, providing nutrients for the entire food web. Thus, understanding the adaptability and structure of zooplankton communities is essential. In this work, the genetic basis for the different temperature adaptations of two seasonally shifted (i.e., temperature-dependent) occurring freshwater rotifers of a formerly cryptic species complex (Brachionus calyciflorus) was investigated to understand the overall genetic diversity and evolutionary scenario for putative adaptations to different temperature regimes. Furthermore, this work aimed to clarify to what extent the different temperature adaptations may represent a niche partitioning process thus enabling co-existence. The findings were then embedded in a metacommunity context to understand how zooplankton communities assemble in a kettle hole metacommunity located in the northeastern German "Uckermark" and which underlying processes contribute to the biodiversity patterns we observe. Using a combined approach of newly generated mitochondrial resources (genomes/cds) and the analysis of a candidate gene (Heat Shock Protein 40kDa) for temperature adaptation, I showed that the global representatives of B. calyciflorus s.s.. are genetically more similar than B. fernandoi (average pairwise nucleotide diversity: 0.079 intraspecific vs. 0.257 interspecific) indicating that both species carry different standing genetic variation. In addition to differential expression in the thermotolerant B. calyciflorus s.s. and thermosensitive B. fernandoi, the HSP 40kDa also showed structural variation with eleven fixed and six positively selected sites, some of which are located in functional areas of the protein. The estimated divergence time of ~ 25-29 Myr combined with the fixed sites and a prevalence of ancestral amino acids in B. calyciflorus s.s. indicate that B. calyciflorus s.s. remained in the ancestral niche, while B. fernandoi partitioned into a new niche. The comparison of mitochondrial and nuclear markers (HPS 40kDa, ITS1, COI) revealed a hybridisation event between the two species. However, as hybridisation between the two species is rare, it can be concluded that the temporally isolated niches (i.e., seasonal-shifted occurrence) they inhabit based on their different temperature preferences most likely represent a pre-zygotic isolation mechanism that allows sympatric occurrence while maintaining species boundaries. To determine the processes underlying zooplankton community assembly, a zooplankton metacommunity comprising 24 kettle holes was sampled over a two-year period. Active (i.e., water samples) and dormant communities (i.e., dormant eggs hatched from sediment) were identified using a two-fragment DNA metabarcoding approach (COI and 18S). Species richness and diversity as well as community composition were analysed considering spatial, temporal and environmental parameters. The analysis revealed that environmental filtering based on parameters such as pH, size and location of the habitat patch (i.e., kettle hole) and surrounding field crops largely determined zooplankton community composition (explained variance: Bray-Curtis dissimilarities: 10.5\%; Jaccard dissimilarities: 12.9\%), indicating that adaptation to a particular habitat is a key feature of zooplankton species in this system. While the spatial configuration of the kettle holes played a minor role (explained variance: Bray-Curtis dissimilarities: 2.8\% and Jaccard dissimilarities: 5.5\%), the individual kettle hole sites had a significant influence on the community composition. This suggests monopolisation/priority effects (i.e., dormant communities) of certain species in individual kettle holes. As environmental filtering is the dominating process structuring zooplankton communities, this system could be significantly influenced by future land-use change, pollution and climate change.}, language = {en} } @article{HodappRabovsky2021, author = {Hodapp, Alice and Rabovsky, Milena}, title = {The N400 ERP component reflects an error-based implicit learning signal during language comprehension}, series = {European journal of neuroscience}, volume = {54}, journal = {European journal of neuroscience}, number = {9}, publisher = {Wiley}, address = {Oxford}, issn = {0953-816X}, doi = {10.1111/ejn.15462}, pages = {7125 -- 7140}, year = {2021}, abstract = {The functional significance of the N400 evoked-response component is still actively debated. An increasing amount of theoretical and computational modelling work is built on the interpretation of the N400 as a prediction error. In neural network modelling work, it was proposed that the N400 component can be interpreted as the change in a probabilistic representation of meaning that drives the continuous adaptation of an internal model of the statistics of the environment. These results imply that increased N400 amplitudes should correspond to greater adaptation, which can be measured via implicit memory. To investigate this model derived hypothesis, the current study manipulated expectancy in a sentence reading task to influence N400 amplitudes and subsequently presented the previously expected vs. unexpected words in a perceptual identification task to measure implicit memory. As predicted, reaction times in the perceptual identification task were significantly faster for previously unexpected words that induced larger N400 amplitudes in the previous sentence reading task. Additionally, it could be demonstrated that this adaptation seems to specifically depend on the process underlying N400 amplitudes, as participants with larger N400 differences during sentence reading also exhibited a larger implicit memory benefit in the perceptual identification task. These findings support the interpretation of the N400 as an implicit learning signal driving adaptation in language processing.}, language = {en} } @article{JehmlichHudsonThieken2020, author = {Jehmlich, Caroline and Hudson, Paul and Thieken, Annegret}, title = {Short contribution on adaptive behaviour of flood-prone companies}, series = {Journal of Flood Risk Management}, volume = {13}, journal = {Journal of Flood Risk Management}, publisher = {Wiley-Blackwell}, address = {Oxford}, issn = {1753-318X}, doi = {10.1111/jfr3.12653}, pages = {7}, year = {2020}, abstract = {Integrated flood management strategies consider property-level precautionary measures as a vital part. Whereas this is a well-researched topic for residents, little is known about the adaptive behaviour of flood-prone companies although they often settle on the ground floor of buildings and are thus among the first affected by flooding. This pilot study analyses flood responses of 64 businesses in a district of the city of Dresden, Germany that experienced major flooding in 2002 and 2013. Using standardised survey data and accompanying qualitative interviews, the analyses revealed that the largest driver of adaptive behaviour is experiencing flood events. Intangible factors such as tradition and a sense of community play a role for the decision to stay in the area, while lacking ownership might hamper property-level adaptation. Further research is also needed to understand the role of insurance and governmental aid for recovery and adaptation of businesses.}, language = {en} } @article{SchachnerJuangMoffittetal.2018, author = {Schachner, Maja Katharina and Juang, Linda P. and Moffitt, Ursula Elinor and van de Vijver, Fons J. R.}, title = {Schools as acculturative and developmental contexts for youth of immigrant and refugee background}, series = {European psychologist : official organ of the European Federation of Psychologists' Associations (EFPA)}, volume = {23}, journal = {European psychologist : official organ of the European Federation of Psychologists' Associations (EFPA)}, number = {1}, publisher = {Hogrefe Publ.}, address = {G{\"o}ttingen}, issn = {1016-9040}, doi = {10.1027/1016-9040/a000312}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-414101}, pages = {44 -- 56}, year = {2018}, abstract = {Schools are important for the academic and socio-emotional development, as well as acculturation of immigrant-and refugee-background youth. We highlight individual differences which shape their unique experiences, while considering three levels of the school context in terms of how they may affect adaptation outcomes: (1) interindividual interactions in the classroom (such as peer relations, student-teacher relations, teacher beliefs, and teaching practices), (2) characteristics of the classroom or school (such as ethnic composition and diversity climate), and (3) relevant school-and nation-level policies (such as diversity policies and school tracking). Given the complexity of the topic, there is a need for more research taking an integrated and interdisciplinary perspective to address migration related issues in the school context. Teacher beliefs and the normative climate in schools seem particularly promising points for intervention, which may be easier to change than structural aspects of the school context. More inclusive schools are also an important step toward more peaceful interethnic relations in diverse societies.}, language = {en} } @misc{CampbellHofreiter2015, author = {Campbell, Kevin L. and Hofreiter, Michael}, title = {Resurrecting phenotypes from ancient DNA sequences: promises and perspectives}, series = {Canadian journal of zoology = Revue canadienne de zoologie}, volume = {93}, journal = {Canadian journal of zoology = Revue canadienne de zoologie}, number = {9}, publisher = {NRC Research Press}, address = {Ottawa}, issn = {0008-4301}, doi = {10.1139/cjz-2014-0337}, pages = {701 -- 710}, year = {2015}, abstract = {Anatomical changes in extinct mammalian lineages over evolutionary time, such as the loss of fingers and teeth and the rapid increase in body size that accompanied the late Miocene dispersal of the progenitors of Steller's sea cows (Hydrodamalis gigas (Zimmermann, 1780)) into North Pacific waters and the convergent development of a thick pelage and accompanying reductions in ear and tail surface area of woolly mammoths (Mammuthus primigenius (Blumenbach, 1799)) and woolly rhinoceros (Coelodonta antiquitatis (Blumenbach, 1799)), are prime examples of adaptive evolution underlying the exploitation of new habitats. It is likely, however, that biochemical specializations adopted during these evolutionary transitions were of similar or even greater biological importance. As these "living" processes do not fossilize, direct information regarding the physiological attributes of extinct species has largely remained beyond the range of scientific inquiry. However, the ability to retrieve genomic sequences from ancient DNA samples, combined with ectopic expression systems, now permit the evolutionary origins and structural and functional properties of authentic prehistoric proteins to be examined in great detail. Exponential technical advances in ancient DNA retrieval, enrichment, and sequencing will soon permit targeted generation of complete genomes from hundreds of extinct species across the last one million years that, in combination with emerging in vitro expression, genome engineering, and cell differentiation techniques, promises to herald an exciting new trajectory of evolutionary research at the interface of biochemistry, genomics, palaeontology, and cell biology.}, language = {en} } @article{SchwensowDeteringPedersonetal.2017, author = {Schwensow, Nina I. and Detering, Harald and Pederson, Stephen and Mazzoni, Camila and Sinclair, Ron and Peacock, David and Kovaliski, John and Cooke, Brian and Fickel, J{\"o}rns and Sommer, Simone}, title = {Resistance to RHD virus in wild Australian rabbits}, series = {Molecular ecology}, volume = {26}, journal = {Molecular ecology}, publisher = {Wiley}, address = {Hoboken}, issn = {0962-1083}, doi = {10.1111/mec.14228}, pages = {4551 -- 4561}, year = {2017}, abstract = {Deciphering the genes involved in disease resistance is essential if we are to understand host-pathogen coevolutionary processes. The rabbit haemorrhagic disease virus (RHDV) was imported into Australia in 1995 as a biocontrol agent to manage one of the most successful and devastating invasive species, the European rabbit (Oryctolagus cuniculus). During the first outbreaks of the disease, RHDV caused mortality rates of up to 97\%. Recently, however, increased genetic resistance to RHDV has been reported. Here, we have aimed to identify genomic differences between rabbits that survived a natural infection with RHDV and those that died in the field using a genomewide next-generation sequencing (NGS) approach. We detected 72 SNPs corresponding to 133 genes associated with survival of a RHD infection. Most of the identified genes have known functions in virus infections and replication, immune responses or apoptosis, or have previously been found to be regulated during RHD. Some of the genes identified in experimental studies, however, did not seem to play a role under natural selection regimes, highlighting the importance of field studies to complement the genomic background of wildlife diseases. Our study provides a set of candidate markers as a tool for the future scanning of wild rabbits for their resistance to RHDV. This is important both for wild rabbit populations in southern Europe where RHD is regarded as a serious problem decimating the prey of endangered predator species and for assessing the success of currently planned RHDV variant biocontrol releases in Australia.}, language = {en} } @article{HeffnerFuhrmeisterLuthraetal.2022, author = {Heffner, Christopher C. and Fuhrmeister, Pamela and Luthra, Sahil and Mechtenberg, Hannah and Saltzman, David and Myers, Emily B.}, title = {Reliability and validity for perceptual flexibility in speech}, series = {Brain and language : a journal of clinical, experimental and theoretical research}, volume = {226}, journal = {Brain and language : a journal of clinical, experimental and theoretical research}, publisher = {Elsevier}, address = {Amsterdam [u.a.]}, issn = {0093-934X}, doi = {10.1016/j.bandl.2021.105070}, pages = {11}, year = {2022}, abstract = {The study of perceptual flexibility in speech depends on a variety of tasks that feature a large degree of variability between participants. Of critical interest is whether measures are consistent within an individual or across stimulus contexts. This is particularly key for individual difference designs that are deployed to examine the neural basis or clinical consequences of perceptual flexibility. In the present set of experiments, we assess the split-half reliability and construct validity of five measures of perceptual flexibility: three of learning in a native language context (e.g., understanding someone with a foreign accent) and two of learning in a non-native context (e.g., learning to categorize non-native speech sounds). We find that most of these tasks show an appreciable level of split-half reliability, although construct validity was sometimes weak. This provides good evidence for reliability for these tasks, while highlighting possible upper limits on expected effect sizes involving each measure.}, language = {en} } @article{JohnOlasMuellerRoeber2021, author = {John, Sheeba and Olas, Justyna Jadwiga and M{\"u}ller-R{\"o}ber, Bernd}, title = {Regulation of alternative splicing in response to temperature variation in plants}, series = {Journal of experimental botany}, volume = {72}, journal = {Journal of experimental botany}, number = {18}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {0022-0957}, doi = {10.1093/jxb/erab232}, pages = {6150 -- 6163}, year = {2021}, abstract = {Plants have evolved numerous molecular strategies to cope with perturbations in environmental temperature, and to adjust growth and physiology to limit the negative effects of extreme temperature. One of the strategies involves alternative splicing of primary transcripts to encode alternative protein products or transcript variants destined for degradation by nonsense-mediated decay. Here, we review how changes in environmental temperature-cold, heat, and moderate alterations in temperature-affect alternative splicing in plants, including crops. We present examples of the mode of action of various temperature-induced splice variants and discuss how these alternative splicing events enable favourable plant responses to altered temperatures. Finally, we point out unanswered questions that should be addressed to fully utilize the endogenous mechanisms in plants to adjust their growth to environmental temperature. We also indicate how this knowledge might be used to enhance crop productivity in the future.}, language = {en} } @article{TesselaarBotzenHaeretal.2020, author = {Tesselaar, Max and Botzen, W. J. Wouter and Haer, Toon and Hudson, Paul and Tiggeloven, Timothy and Aerts, Jeroen C. J. H.}, title = {Regional inequalities in flood insurance affordability and uptake under climate change}, series = {Sustainability}, volume = {12}, journal = {Sustainability}, number = {20}, publisher = {MDPI}, address = {Basel}, issn = {2071-1050}, doi = {10.3390/su12208734}, pages = {30}, year = {2020}, abstract = {Flood insurance coverage can enhance financial resilience of households to changing flood risk caused by climate change. However, income inequalities imply that not all households can afford flood insurance. The uptake of flood insurance in voluntary markets may decline when flood risk increases as a result of climate change. This increase in flood risk may cause substantially higher risk-based insurance premiums, reduce the willingness to purchase flood insurance, and worsen problems with the unaffordability of coverage for low-income households. A socio-economic tipping-point can occur when the functioning of a formal flood insurance system is hampered by diminishing demand for coverage. In this study, we examine whether such a tipping-point can occur in Europe for current flood insurance systems under different trends in future flood risk caused by climate and socio-economic change. This analysis gives insights into regional inequalities concerning the ability to continue to use flood insurance as an instrument to adapt to changing flood risk. For this study, we adapt the "Dynamic Integrated Flood and Insurance" (DIFI) model by integrating new flood risk simulations in the model that enable examining impacts from various scenarios of climate and socio-economic change on flood insurance premiums and consumer demand. Our results show rising unaffordability and declining demand for flood insurance across scenarios towards 2080. Under a high climate change scenario, simulations show the occurrence of a socio-economic tipping-point in several regions, where insurance uptake almost disappears. A tipping-point and related inequalities in the ability to use flood insurance as an adaptation instrument can be mitigated by introducing reforms of flood insurance arrangements.}, language = {en} } @article{SchwensowCookeKovaliskietal.2014, author = {Schwensow, Nina I. and Cooke, Brian and Kovaliski, John and Sinclair, Ron and Peacock, David and Fickel, J{\"o}rns and Sommer, Simone}, title = {Rabbit haemorrhagic disease: virus persistence and adaptation in Australia}, series = {Evolutionary applications}, volume = {7}, journal = {Evolutionary applications}, number = {9}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {1752-4571}, doi = {10.1111/eva.12195}, pages = {1056 -- 1067}, year = {2014}, abstract = {In Australia, the rabbit haemorrhagic disease virus (RHDV) has been used since 1996 to reduce numbers of introduced European rabbits (Oryctolagus cuniculus) which have a devastating impact on the native Australian environment. RHDV causes regular, short disease outbreaks, but little is known about how the virus persists and survives between epidemics. We examined the initial spread of RHDV to show that even upon its initial spread, the virus circulated continuously on a regional scale rather than persisting at a local population level and that Australian rabbit populations are highly interconnected by virus-carrying flying vectors. Sequencing data obtained from a single rabbit population showed that the viruses that caused an epidemic each year seldom bore close genetic resemblance to those present in previous years. Together, these data suggest that RHDV survives in the Australian environment through its ability to spread amongst rabbit subpopulations. This is consistent with modelling results that indicated that in a large interconnected rabbit meta-population, RHDV should maintain high virulence, cause short, strong disease outbreaks but show low persistence in any given subpopulation. This new epidemiological framework is important for understanding virus-host co-evolution and future disease management options of pest species to secure Australia's remaining natural biodiversity.}, language = {en} }