@article{HeffnerFuhrmeisterLuthraetal.2022, author = {Heffner, Christopher C. and Fuhrmeister, Pamela and Luthra, Sahil and Mechtenberg, Hannah and Saltzman, David and Myers, Emily B.}, title = {Reliability and validity for perceptual flexibility in speech}, series = {Brain and language : a journal of clinical, experimental and theoretical research}, volume = {226}, journal = {Brain and language : a journal of clinical, experimental and theoretical research}, publisher = {Elsevier}, address = {Amsterdam [u.a.]}, issn = {0093-934X}, doi = {10.1016/j.bandl.2021.105070}, pages = {11}, year = {2022}, abstract = {The study of perceptual flexibility in speech depends on a variety of tasks that feature a large degree of variability between participants. Of critical interest is whether measures are consistent within an individual or across stimulus contexts. This is particularly key for individual difference designs that are deployed to examine the neural basis or clinical consequences of perceptual flexibility. In the present set of experiments, we assess the split-half reliability and construct validity of five measures of perceptual flexibility: three of learning in a native language context (e.g., understanding someone with a foreign accent) and two of learning in a non-native context (e.g., learning to categorize non-native speech sounds). We find that most of these tasks show an appreciable level of split-half reliability, although construct validity was sometimes weak. This provides good evidence for reliability for these tasks, while highlighting possible upper limits on expected effect sizes involving each measure.}, language = {en} } @article{KreibichHudsonMerz2021, author = {Kreibich, Heidi and Hudson, Paul and Merz, Bruno}, title = {Knowing what to do substantially improves the effectiveness of flood early warning}, series = {Bulletin of the American Meteorological Society}, volume = {102}, journal = {Bulletin of the American Meteorological Society}, number = {7}, publisher = {American Meteorological Soc.}, address = {Boston}, issn = {0003-0007}, doi = {10.1175/BAMS-D-20-0262.1}, pages = {E1450 -- E1463}, year = {2021}, abstract = {Flood warning systems are longstanding success stories with respect to protecting human life, but monetary losses continue to grow. Knowledge on the effectiveness of flood early warning in reducing monetary losses is scarce, especially at the individual level. To gain more knowledge in this area, we analyze a dataset that is unique with respect to detailed information on warning reception and monetary losses at the property level and with respect to amount of data available. The dataset contains 4,468 loss cases from six flood events in Germany. These floods occurred between 2002 and 2013. The data from each event were collected by computer-aided telephone interviews in four surveys following a repeated cross-sectional design. We quantitatively reveal that flood early warning is only effective in reducing monetary losses when people know what to do when they receive the warning. We also show that particularly long-term preparedness is associated with people knowing what to do when they receive a warning. Thus, risk communication, training, and (financial) support for private preparedness are effective in mitigating flood losses in two ways: precautionary measures and more effective emergency responses.}, language = {en} } @article{JohnOlasMuellerRoeber2021, author = {John, Sheeba and Olas, Justyna Jadwiga and M{\"u}ller-R{\"o}ber, Bernd}, title = {Regulation of alternative splicing in response to temperature variation in plants}, series = {Journal of experimental botany}, volume = {72}, journal = {Journal of experimental botany}, number = {18}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {0022-0957}, doi = {10.1093/jxb/erab232}, pages = {6150 -- 6163}, year = {2021}, abstract = {Plants have evolved numerous molecular strategies to cope with perturbations in environmental temperature, and to adjust growth and physiology to limit the negative effects of extreme temperature. One of the strategies involves alternative splicing of primary transcripts to encode alternative protein products or transcript variants destined for degradation by nonsense-mediated decay. Here, we review how changes in environmental temperature-cold, heat, and moderate alterations in temperature-affect alternative splicing in plants, including crops. We present examples of the mode of action of various temperature-induced splice variants and discuss how these alternative splicing events enable favourable plant responses to altered temperatures. Finally, we point out unanswered questions that should be addressed to fully utilize the endogenous mechanisms in plants to adjust their growth to environmental temperature. We also indicate how this knowledge might be used to enhance crop productivity in the future.}, language = {en} } @article{KruseKolmogorovPestryakovaetal.2020, author = {Kruse, Stefan and Kolmogorov, Aleksey I. and Pestryakova, Luidmila Agafyevna and Herzschuh, Ulrike}, title = {Long-lived larch clones may conserve adaptations that could restrict treeline migration in northern Siberia}, series = {Ecology and evolution}, volume = {10}, journal = {Ecology and evolution}, number = {18}, publisher = {Wiley}, address = {Hoboken}, issn = {2045-7758}, doi = {10.1002/ece3.6660}, pages = {10017 -- 10030}, year = {2020}, abstract = {The occurrence of refugia beyond the arctic treeline and genetic adaptation therein play a crucial role of largely unknown effect size. While refugia have potential for rapidly colonizing the tundra under global warming, the taxa may be maladapted to the new environmental conditions. Understanding the genetic composition and age of refugia is thus crucial for predicting any migration response. Here, we genotype 194 larch individuals from an similar to 1.8 km(2)area in northcentral Siberia on the southern Taimyr Peninsula by applying an assay of 16 nuclear microsatellite markers. For estimating the age of clonal individuals, we counted tree rings at sections along branches to establish a lateral growth rate that was then combined with geographic distance. Findings reveal that the predominant reproduction type is clonal (58.76\%) by short distance spreading of ramets. One outlier of clones 1 km apart could have been dispersed by reindeer. In clonal groups and within individuals, we find that somatic mutations accumulate with geographic distance. Clonal groups of two or more individuals are observed. Clonal age estimates regularly suggest individuals as old as 2,200 years, which coincides with a major environmental change that forced a treeline retreat in the region. We conclude that individuals with clonal growth mode were naturally selected as it lowers the likely risk of extinction under a harsh environment. We discuss this legacy from the past that might now be a maladaptation and hinder expansion under currently strongly increasing temperatures.}, language = {en} } @phdthesis{Derežanin2023, author = {Derežanin, Lorena}, title = {Contribution of structural variation to adaptive evolution of mammalian genomes}, doi = {10.25932/publishup-59144}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-591443}, school = {Universit{\"a}t Potsdam}, pages = {188}, year = {2023}, abstract = {Following the extinction of dinosaurs, the great adaptive radiation of mammals occurred, giving rise to an astonishing ecological and phenotypic diversity of mammalian species. Even closely related species often inhabit vastly different habitats, where they encounter diverse environmental challenges and are exposed to different evolutionary pressures. As a response, mammals evolved various adaptive phenotypes over time, such as morphological, physiological and behavioural ones. Mammalian genomes vary in their content and structure and this variation represents the molecular mechanism for the long-term evolution of phenotypic variation. However, understanding this molecular basis of adaptive phenotypic variation is usually not straightforward. The recent development of sequencing technologies and bioinformatics tools has enabled a better insight into mammalian genomes. Through these advances, it was acknowledged that mammalian genomes differ more, both within and between species, as a consequence of structural variation compared to single-nucleotide differences. Structural variant types investigated in this thesis - such as deletion, duplication, inversion and insertion, represent a change in the structure of the genome, impacting the size, copy number, orientation and content of DNA sequences. Unlike short variants, structural variants can span multiple genes. They can alter gene dosage, and cause notable gene expression differences and subsequently phenotypic differences. Thus, they can lead to a more dramatic effect on the fitness (reproductive success) of individuals, local adaptation of populations and speciation. In this thesis, I investigated and evaluated the potential functional effect of structural variations on the genomes of mustelid species. To detect the genomic regions associated with phenotypic variation I assembled the first reference genome of the tayra (Eira barbara) relying on linked-read sequencing technology to achieve a high level of genome completeness important for reliable structural variant discovery. I then set up a bioinformatics pipeline to conduct a comparative genomic analysis and explore variation between mustelid species living in different environments. I found numerous genes associated with species-specific phenotypes related to diet, body condition and reproduction among others, to be impacted by structural variants. Furthermore, I investigated the effects of artificial selection on structural variants in mice selected for high fertility, increased body mass and high endurance. Through selective breeding of each mouse line, the desired phenotypes have spread within these populations, while maintaining structural variants specific to each line. In comparison to the control line, the litter size has doubled in the fertility lines, individuals in the high body mass lines have become considerably larger, and mice selected for treadmill performance covered substantially more distance. Structural variants were found in higher numbers in these trait-selected lines than in the control line when compared to the mouse reference genome. Moreover, we have found twice as many structural variants spanning protein-coding genes (specific to each line) in trait-selected lines. Several of these variants affect genes associated with selected phenotypic traits. These results imply that structural variation does indeed contribute to the evolution of the selected phenotypes and is heritable. Finally, I suggest a set of critical metrics of genomic data that should be considered for a stringent structural variation analysis as comparative genomic studies strongly rely on the contiguity and completeness of genome assemblies. Because most of the available data used to represent reference genomes of mammalian species is generated using short-read sequencing technologies, we may have incomplete knowledge of genomic features. Therefore, a cautious structural variation analysis is required to minimize the effect of technical constraints. The impact of structural variants on the adaptive evolution of mammalian genomes is slowly gaining more focus but it is still incorporated in only a small number of population studies. In my thesis, I advocate the inclusion of structural variants in studies of genomic diversity for a more comprehensive insight into genomic variation within and between species, and its effect on adaptive evolution.}, language = {en} } @article{WagenerReineckePianosi2022, author = {Wagener, Thorsten and Reinecke, Robert and Pianosi, Francesca}, title = {On the evaluation of climate change impact models}, series = {Wiley interdisciplinary reviews : Climate change}, volume = {13}, journal = {Wiley interdisciplinary reviews : Climate change}, number = {3}, publisher = {Wiley}, address = {Hoboken}, issn = {1757-7780}, doi = {10.1002/wcc.772}, pages = {13}, year = {2022}, abstract = {In-depth understanding of the potential implications of climate change is required to guide decision- and policy-makers when developing adaptation strategies and designing infrastructure suitable for future conditions. Impact models that translate potential future climate conditions into variables of interest are needed to create the causal connection between a changing climate and its impact for different sectors. Recent surveys suggest that the primary strategy for validating such models (and hence for justifying their use) heavily relies on assessing the accuracy of model simulations by comparing them against historical observations. We argue that such a comparison is necessary and valuable, but not sufficient to achieve a comprehensive evaluation of climate change impact models. We believe that a complementary, largely observation-independent, step of model evaluation is needed to ensure more transparency of model behavior and greater robustness of scenario-based analyses. This step should address the following four questions: (1) Do modeled dominant process controls match our system perception? (2) Is my model's sensitivity to changing forcing as expected? (3) Do modeled decision levers show adequate influence? (4) Can we attribute uncertainty sources throughout the projection horizon? We believe that global sensitivity analysis, with its ability to investigate a model's response to joint variations of multiple inputs in a structured way, offers a coherent approach to address all four questions comprehensively. Such additional model evaluation would strengthen stakeholder confidence in model projections and, therefore, into the adaptation strategies derived with the help of impact models. This article is categorized under: Climate Models and Modeling > Knowledge Generation with Models Assessing Impacts of Climate Change > Evaluating Future Impacts of Climate Change}, language = {en} } @article{HenschkeZecherMayeretal.2021, author = {Henschke, Jakob and Zecher, Mahli Megan and Mayer, Frank and Engel, Tilman}, title = {Contralateral repeated bout effect following preconditioning exercises}, series = {Sport sciences for health}, volume = {18}, journal = {Sport sciences for health}, number = {1}, publisher = {Soringer Italia}, address = {Milan}, issn = {1824-7490}, doi = {10.1007/s11332-021-00804-0}, pages = {1 -- 10}, year = {2021}, abstract = {Background Recent studies indicate the existence of a repeated bout effect on the contralateral untrained limb following eccentric and isometric contractions. Aims This review aims to summarize the evidence for magnitude, duration and differences of this effect following isometric and eccentric preconditioning exercises. Methods Medline, Cochrane, and Web of science were searched from January 1971 until September 2020. Randomized controlled trials, case-control studies and cross-sectional studies were identified by combining keywords and synonyms (e.g., "contralateral", "exercise", "preconditioning", "protective effect"). At least two of the following outcome parameters were mandatory for study inclusion: strength, muscle soreness, muscle swelling, limb circumference, inflammatory blood markers or protective index (relative change of aforementioned measures). Results After identifying 1979 articles, 13 studies were included. Most investigations examined elbow flexors and utilized eccentric isokinetic protocols to induce the contralateral repeated bout effect. The magnitude of protection was observed in four studies, smaller values of the contralateral when compared to the ipsilateral repeated bout effect were noted in three studies. The potential mechanism is thought to be of neural central nature since no differences in peripheral muscle activity were observed. Time course was examined in three investigations. One study showed a smaller protective effect following isometric preconditioning when compared to eccentric preconditioning exercises. Conclusions The contralateral repeated bout effect demonstrates a smaller magnitude and lasts shorter than the ipsilateral repeated bout effect. Future research should incorporate long-term controlled trials including larger populations to identify central mechanisms. This knowledge should be used in clinical practice to prepare immobilized limbs prospectively for an incremental load.}, language = {en} } @phdthesis{Kiemel2023, author = {Kiemel, Katrin}, title = {Zooplankton adaptations and community dynamics in space and time}, school = {Universit{\"a}t Potsdam}, year = {2023}, abstract = {In times of ongoing biodiversity loss, understanding how communities are structured and what mechanisms and local adaptations underlie the patterns we observe in nature is crucial for predicting how future ecological and anthropogenic changes might affect local and regional biodiversity. Aquatic zooplankton are a group of primary consumers that represent a critical link in the food chain, providing nutrients for the entire food web. Thus, understanding the adaptability and structure of zooplankton communities is essential. In this work, the genetic basis for the different temperature adaptations of two seasonally shifted (i.e., temperature-dependent) occurring freshwater rotifers of a formerly cryptic species complex (Brachionus calyciflorus) was investigated to understand the overall genetic diversity and evolutionary scenario for putative adaptations to different temperature regimes. Furthermore, this work aimed to clarify to what extent the different temperature adaptations may represent a niche partitioning process thus enabling co-existence. The findings were then embedded in a metacommunity context to understand how zooplankton communities assemble in a kettle hole metacommunity located in the northeastern German "Uckermark" and which underlying processes contribute to the biodiversity patterns we observe. Using a combined approach of newly generated mitochondrial resources (genomes/cds) and the analysis of a candidate gene (Heat Shock Protein 40kDa) for temperature adaptation, I showed that the global representatives of B. calyciflorus s.s.. are genetically more similar than B. fernandoi (average pairwise nucleotide diversity: 0.079 intraspecific vs. 0.257 interspecific) indicating that both species carry different standing genetic variation. In addition to differential expression in the thermotolerant B. calyciflorus s.s. and thermosensitive B. fernandoi, the HSP 40kDa also showed structural variation with eleven fixed and six positively selected sites, some of which are located in functional areas of the protein. The estimated divergence time of ~ 25-29 Myr combined with the fixed sites and a prevalence of ancestral amino acids in B. calyciflorus s.s. indicate that B. calyciflorus s.s. remained in the ancestral niche, while B. fernandoi partitioned into a new niche. The comparison of mitochondrial and nuclear markers (HPS 40kDa, ITS1, COI) revealed a hybridisation event between the two species. However, as hybridisation between the two species is rare, it can be concluded that the temporally isolated niches (i.e., seasonal-shifted occurrence) they inhabit based on their different temperature preferences most likely represent a pre-zygotic isolation mechanism that allows sympatric occurrence while maintaining species boundaries. To determine the processes underlying zooplankton community assembly, a zooplankton metacommunity comprising 24 kettle holes was sampled over a two-year period. Active (i.e., water samples) and dormant communities (i.e., dormant eggs hatched from sediment) were identified using a two-fragment DNA metabarcoding approach (COI and 18S). Species richness and diversity as well as community composition were analysed considering spatial, temporal and environmental parameters. The analysis revealed that environmental filtering based on parameters such as pH, size and location of the habitat patch (i.e., kettle hole) and surrounding field crops largely determined zooplankton community composition (explained variance: Bray-Curtis dissimilarities: 10.5\%; Jaccard dissimilarities: 12.9\%), indicating that adaptation to a particular habitat is a key feature of zooplankton species in this system. While the spatial configuration of the kettle holes played a minor role (explained variance: Bray-Curtis dissimilarities: 2.8\% and Jaccard dissimilarities: 5.5\%), the individual kettle hole sites had a significant influence on the community composition. This suggests monopolisation/priority effects (i.e., dormant communities) of certain species in individual kettle holes. As environmental filtering is the dominating process structuring zooplankton communities, this system could be significantly influenced by future land-use change, pollution and climate change.}, language = {en} } @article{TesselaarBotzenHaeretal.2020, author = {Tesselaar, Max and Botzen, W. J. Wouter and Haer, Toon and Hudson, Paul and Tiggeloven, Timothy and Aerts, Jeroen C. J. H.}, title = {Regional inequalities in flood insurance affordability and uptake under climate change}, series = {Sustainability}, volume = {12}, journal = {Sustainability}, number = {20}, publisher = {MDPI}, address = {Basel}, issn = {2071-1050}, doi = {10.3390/su12208734}, pages = {30}, year = {2020}, abstract = {Flood insurance coverage can enhance financial resilience of households to changing flood risk caused by climate change. However, income inequalities imply that not all households can afford flood insurance. The uptake of flood insurance in voluntary markets may decline when flood risk increases as a result of climate change. This increase in flood risk may cause substantially higher risk-based insurance premiums, reduce the willingness to purchase flood insurance, and worsen problems with the unaffordability of coverage for low-income households. A socio-economic tipping-point can occur when the functioning of a formal flood insurance system is hampered by diminishing demand for coverage. In this study, we examine whether such a tipping-point can occur in Europe for current flood insurance systems under different trends in future flood risk caused by climate and socio-economic change. This analysis gives insights into regional inequalities concerning the ability to continue to use flood insurance as an instrument to adapt to changing flood risk. For this study, we adapt the "Dynamic Integrated Flood and Insurance" (DIFI) model by integrating new flood risk simulations in the model that enable examining impacts from various scenarios of climate and socio-economic change on flood insurance premiums and consumer demand. Our results show rising unaffordability and declining demand for flood insurance across scenarios towards 2080. Under a high climate change scenario, simulations show the occurrence of a socio-economic tipping-point in several regions, where insurance uptake almost disappears. A tipping-point and related inequalities in the ability to use flood insurance as an adaptation instrument can be mitigated by introducing reforms of flood insurance arrangements.}, language = {en} } @article{HodappRabovsky2021, author = {Hodapp, Alice and Rabovsky, Milena}, title = {The N400 ERP component reflects an error-based implicit learning signal during language comprehension}, series = {European journal of neuroscience}, volume = {54}, journal = {European journal of neuroscience}, number = {9}, publisher = {Wiley}, address = {Oxford}, issn = {0953-816X}, doi = {10.1111/ejn.15462}, pages = {7125 -- 7140}, year = {2021}, abstract = {The functional significance of the N400 evoked-response component is still actively debated. An increasing amount of theoretical and computational modelling work is built on the interpretation of the N400 as a prediction error. In neural network modelling work, it was proposed that the N400 component can be interpreted as the change in a probabilistic representation of meaning that drives the continuous adaptation of an internal model of the statistics of the environment. These results imply that increased N400 amplitudes should correspond to greater adaptation, which can be measured via implicit memory. To investigate this model derived hypothesis, the current study manipulated expectancy in a sentence reading task to influence N400 amplitudes and subsequently presented the previously expected vs. unexpected words in a perceptual identification task to measure implicit memory. As predicted, reaction times in the perceptual identification task were significantly faster for previously unexpected words that induced larger N400 amplitudes in the previous sentence reading task. Additionally, it could be demonstrated that this adaptation seems to specifically depend on the process underlying N400 amplitudes, as participants with larger N400 differences during sentence reading also exhibited a larger implicit memory benefit in the perceptual identification task. These findings support the interpretation of the N400 as an implicit learning signal driving adaptation in language processing.}, language = {en} }