@article{Metzler2019,
  author    = {Metzler, Ralf},
  title     = {Brownian motion and beyond: first-passage, power spectrum, non-Gaussianity, and anomalous diffusion},
  series = {Journal of statistical mechanics: theory and experiment},
  volume    = {2019},
  journal   = {Journal of statistical mechanics: theory and experiment},
  number    = {11},
  publisher = {IOP Publ. Ltd.},
  address   = {Bristol},
  issn      = {1742-5468},
  doi       = {10.1088/1742-5468/ab4988},
  pages     = {18},
  year      = {2019},
  abstract  = {Brownian motion is a ubiquitous physical phenomenon across the sciences. After its discovery by Brown and intensive study since the first half of the 20th century, many different aspects of Brownian motion and stochastic processes in general have been addressed in Statistical Physics. In particular, there now exists a very large range of applications of stochastic processes in various disciplines. Here we provide a summary of some of the recent developments in the field of stochastic processes, highlighting both the experimental findings and theoretical frameworks.},
  language  = {en}
}
@misc{KindlerPulkkinenCherstvyetal.2019,
  author    = {Kindler, Oliver and Pulkkinen, Otto and Cherstvy, Andrey G. and Metzler, Ralf},
  title     = {Burst Statistics in an Early Biofilm Quorum Sensing Mode},
  series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  number    = {777},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-43909},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-439099},
  pages     = {21},
  year      = {2019},
  abstract  = {Quorum-sensing bacteria in a growing colony of cells send out signalling molecules (so-called "autoinducers") and themselves sense the autoinducer concentration in their vicinity. Once—due to increased local cell density inside a "cluster" of the growing colony—the concentration of autoinducers exceeds a threshold value, cells in this clusters get "induced" into a communal, multi-cell biofilm-forming mode in a cluster-wide burst event. We analyse quantitatively the influence of spatial disorder, the local heterogeneity of the spatial distribution of cells in the colony, and additional physical parameters such as the autoinducer signal range on the induction dynamics of the cell colony. Spatial inhomogeneity with higher local cell concentrations in clusters leads to earlier but more localised induction events, while homogeneous distributions lead to comparatively delayed but more concerted induction of the cell colony, and, thus, a behaviour close to the mean-field dynamics. We quantify the induction dynamics with quantifiers such as the time series of induction events and burst sizes, the grouping into induction families, and the mean autoinducer concentration levels. Consequences for different scenarios of biofilm growth are discussed, providing possible cues for biofilm control in both health care and biotechnology.},
  language  = {en}
}
@article{KindlerPulkkinenCherstvyetal.2019,
  author    = {Kindler, Oliver and Pulkkinen, Otto and Cherstvy, Andrey G. and Metzler, Ralf},
  title     = {Burst Statistics in an Early Biofilm Quorum Sensing Mode},
  series = {Scientific Reports},
  volume    = {9},
  journal   = {Scientific Reports},
  publisher = {Macmillan Publishers Limited part of Springer Nature},
  address   = {London},
  issn      = {2045-2322},
  doi       = {10.1038/s41598-019-48525-2},
  pages     = {19},
  year      = {2019},
  abstract  = {Quorum-sensing bacteria in a growing colony of cells send out signalling molecules (so-called "autoinducers") and themselves sense the autoinducer concentration in their vicinity. Once—due to increased local cell density inside a "cluster" of the growing colony—the concentration of autoinducers exceeds a threshold value, cells in this clusters get "induced" into a communal, multi-cell biofilm-forming mode in a cluster-wide burst event. We analyse quantitatively the influence of spatial disorder, the local heterogeneity of the spatial distribution of cells in the colony, and additional physical parameters such as the autoinducer signal range on the induction dynamics of the cell colony. Spatial inhomogeneity with higher local cell concentrations in clusters leads to earlier but more localised induction events, while homogeneous distributions lead to comparatively delayed but more concerted induction of the cell colony, and, thus, a behaviour close to the mean-field dynamics. We quantify the induction dynamics with quantifiers such as the time series of induction events and burst sizes, the grouping into induction families, and the mean autoinducer concentration levels. Consequences for different scenarios of biofilm growth are discussed, providing possible cues for biofilm control in both health care and biotechnology.},
  language  = {en}
}
@misc{ŚlęzakMetzlerMagdziarz2019,
  author    = {Ślęzak, Jakub and Metzler, Ralf and Magdziarz, Marcin},
  title     = {Codifference can detect ergodicity breaking and non-Gaussianity},
  series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  number    = {748},
  doi       = {10.25932/publishup-43617},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-436178},
  pages     = {25},
  year      = {2019},
  abstract  = {We show that the codifference is a useful tool in studying the ergodicity breaking and non-Gaussianity properties of stochastic time series. While the codifference is a measure of dependence that was previously studied mainly in the context of stable processes, we here extend its range of applicability to random-parameter and diffusing-diffusivity models which are important in contemporary physics, biology and financial engineering. We prove that the codifference detects forms of dependence and ergodicity breaking which are not visible from analysing the covariance and correlation functions. We also discuss a related measure of dispersion, which is a nonlinear analogue of the mean squared displacement.},
  language  = {en}
}
@article{ŚlęzakMetzlerMagdziarz2019,
  author    = {Ślęzak, Jakub and Metzler, Ralf and Magdziarz, Marcin},
  title     = {Codifference can detect ergodicity breaking and non-Gaussianity},
  series = {New Journal of Physics},
  volume    = {21},
  journal   = {New Journal of Physics},
  publisher = {Deutsche Physikalische Gesellschaft},
  address   = {Bad Honnef},
  issn      = {1367-2630},
  doi       = {10.1088/1367-2630/ab13f3},
  pages     = {25},
  year      = {2019},
  abstract  = {We show that the codifference is a useful tool in studying the ergodicity breaking and non-Gaussianity properties of stochastic time series. While the codifference is a measure of dependence that was previously studied mainly in the context of stable processes, we here extend its range of applicability to random-parameter and diffusing-diffusivity models which are important in contemporary physics, biology and financial engineering. We prove that the codifference detects forms of dependence and ergodicity breaking which are not visible from analysing the covariance and correlation functions. We also discuss a related measure of dispersion, which is a nonlinear analogue of the mean squared displacement.},
  language  = {en}
}
@article{TeomyMetzler2019,
  author    = {Teomy, Eial and Metzler, Ralf},
  title     = {Correlations and transport in exclusion processes with general finite memory},
  series = {Journal of statistical mechanics: theory and experiment},
  volume    = {2019},
  journal   = {Journal of statistical mechanics: theory and experiment},
  number    = {10},
  publisher = {IOP Publ. Ltd.},
  address   = {Bristol},
  issn      = {1742-5468},
  doi       = {10.1088/1742-5468/ab47fb},
  pages     = {31},
  year      = {2019},
  language  = {en}
}
@misc{MolinaGarciaSandevSafdarietal.2019,
  author    = {Molina-Garcia, Daniel and Sandev, Trifce and Safdari, Hadiseh and Pagnini, Gianni and Chechkin, Aleksei V. and Metzler, Ralf},
  title     = {Crossover from anomalous to normal diffusion},
  series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  number    = {507},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-42259},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-422590},
  pages     = {28},
  year      = {2019},
  abstract  = {Abstract The emerging diffusive dynamics in many complex systems show a characteristic crossover behaviour from anomalous to normal diffusion which is otherwise fitted by two independent power-laws. A prominent example for a subdiffusive-diffusive crossover are viscoelastic systems such as lipid bilayer membranes, while superdiffusive-diffusive crossovers occur in systems of actively moving biological cells. We here consider the general dynamics of a stochastic particle driven by so-called tempered fractional Gaussian noise, that is noise with Gaussian amplitude and power-law correlations, which are cut off at some mesoscopic time scale. Concretely we consider such noise with built-in exponential or power-law tempering, driving an overdamped Langevin equation (fractional Brownian motion) and fractional Langevin equation motion. We derive explicit expressions for the mean squared displacement and correlation functions, including different shapes of the crossover behaviour depending on the concrete tempering, and discuss the physical meaning of the tempering. In the case of power-law tempering we also find a crossover behaviour from faster to slower superdiffusion and slower to faster subdiffusion. As a direct application of our model we demonstrate that the obtained dynamics quantitatively describes the subdiffusion-diffusion and subdiffusion-subdiffusion crossover in lipid bilayer systems. We also show that a model of tempered fractional Brownian motion recently proposed by Sabzikar and Meerschaert leads to physically very different behaviour with a seemingly paradoxical ballistic long time scaling.},
  language  = {en}
}
@article{PalyulinBlackburnLomholtetal.2019,
  author    = {Palyulin, Vladimir V. and Blackburn, George and Lomholt, Michael A. and Watkins, Nicholas W. and Metzler, Ralf and Klages, Rainer and Chechkin, Aleksei V.},
  title     = {First passage and first hitting times of Levy flights and Levy walks},
  series = {New journal of physics : the open-access journal for physics},
  volume    = {21},
  journal   = {New journal of physics : the open-access journal for physics},
  number    = {10},
  publisher = {IOP Publ. Ltd.},
  address   = {Bristol},
  issn      = {1367-2630},
  doi       = {10.1088/1367-2630/ab41bb},
  pages     = {23},
  year      = {2019},
  abstract  = {For both L{\´e}vy flight and L{\´e}vy walk search processes we analyse the full distribution of first-passage and first-hitting (or first-arrival) times. These are, respectively, the times when the particle moves across a point at some given distance from its initial position for the first time, or when it lands at a given point for the first time. For L{\´e}vy motions with their propensity for long relocation events and thus the possibility to jump across a given point in space without actually hitting it ('leapovers'), these two definitions lead to significantly different results. We study the first-passage and first-hitting time distributions as functions of the L{\´e}vy stable index, highlighting the different behaviour for the cases when the first absolute moment of the jump length distribution is finite or infinite. In particular we examine the limits of short and long times. Our results will find their application in the mathematical modelling of random search processes as well as computer algorithms.},
  language  = {en}
}
@misc{PalyulinBlackburnLomholtetal.2019,
  author    = {Palyulin, Vladimir V and Blackburn, George and Lomholt, Michael A and Watkins, Nicholas W and Metzler, Ralf and Klages, Rainer and Chechkin, Aleksei V.},
  title     = {First passage and first hitting times of L{\´e}vy flights and L{\´e}vy walks},
  series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  number    = {785},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-43983},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-439832},
  pages     = {25},
  year      = {2019},
  abstract  = {For both L{\´e}vy flight and L{\´e}vy walk search processes we analyse the full distribution of first-passage and first-hitting (or first-arrival) times. These are, respectively, the times when the particle moves across a point at some given distance from its initial position for the first time, or when it lands at a given point for the first time. For L{\´e}vy motions with their propensity for long relocation events and thus the possibility to jump across a given point in space without actually hitting it ('leapovers'), these two definitions lead to significantly different results. We study the first-passage and first-hitting time distributions as functions of the L{\´e}vy stable index, highlighting the different behaviour for the cases when the first absolute moment of the jump length distribution is finite or infinite. In particular we examine the limits of short and long times. Our results will find their application in the mathematical modelling of random search processes as well as computer algorithms.},
  language  = {en}
}
@article{PalyulinBlackburnLomholtetal.2019,
  author    = {Palyulin, Vladimir V and Blackburn, George and Lomholt, Michael A and Watkins, Nicholas W and Metzler, Ralf and Klages, Rainer and Chechkin, Aleksei V.},
  title     = {First passage and first hitting times of L{\´e}vy flights and L{\´e}vy walks},
  series = {New Journal of Physics},
  volume    = {21},
  journal   = {New Journal of Physics},
  publisher = {Dt. Physikalische Ges.},
  address   = {Bad Honnef},
  issn      = {1367-2630},
  doi       = {10.1088/1367-2630/ab41bb},
  pages     = {24},
  year      = {2019},
  abstract  = {For both L{\´e}vy flight and L{\´e}vy walk search processes we analyse the full distribution of first-passage and first-hitting (or first-arrival) times. These are, respectively, the times when the particle moves across a point at some given distance from its initial position for the first time, or when it lands at a given point for the first time. For L{\´e}vy motions with their propensity for long relocation events and thus the possibility to jump across a given point in space without actually hitting it ('leapovers'), these two definitions lead to significantly different results. We study the first-passage and first-hitting time distributions as functions of the L{\´e}vy stable index, highlighting the different behaviour for the cases when the first absolute moment of the jump length distribution is finite or infinite. In particular we examine the limits of short and long times. Our results will find their application in the mathematical modelling of random search processes as well as computer algorithms.},
  language  = {en}
}