@phdthesis{Wischnewski2011,
  author    = {Wischnewski, Juliane},
  title     = {Reconstructing climate variability on the Tibetan Plateau : comparing aquatic and terrestrial signals},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-52453},
  school      = {Universit{\"a}t Potsdam},
  year      = {2011},
  abstract  = {Spatial and temporal temperature and moisture patterns across the Tibetan Plateau are very complex. The onset and magnitude of the Holocene climate optimum in the Asian monsoon realm, in particular, is a subject of considerable debate as this time period is often used as an analogue for recent global warming. In the light of contradictory inferences regarding past climate and environmental change on the Tibetan Plateau, I have attempted to explain mismatches in the timing and magnitude of change. Therefore, I analysed the temporal variation of fossil pollen and diatom spectra and the geochemical record from palaeo-ecological records covering different time scales (late Quaternary and the last 200 years) from two core regions in the NE and SE Tibetan Plateau. For interpretation purposes I combined my data with other available palaeo-ecological data to set up corresponding aquatic and terrestrial proxy data sets of two lake pairs and two sets of sites. I focused on the direct comparison of proxies representing lacustrine response to climate signals (e.g., diatoms, ostracods, geochemical record) and proxies representing changes in the terrestrial environment (i.e., terrestrial pollen), in order to asses whether the lake and its catchments respond at similar times and magnitudes to environmental changes. Therefore, I introduced the established numerical technique procrustes rotation as a new approach in palaeoecology to quantitatively compare raw data of any two sedimentary records of interest in order to assess their degree of concordance. Focusing on the late Quaternary, sediment cores from two lakes (Kuhai Lake 35.3°N; 99.2°E; 4150 m asl; and Koucha Lake 34.0°N; 97.2°E; 4540 m asl) on the semi-arid northeastern Tibetan Plateau were analysed to identify post-glacial vegetation and environmental changes, and to investigate the responses of lake ecosystems to such changes. Based on the pollen record, five major vegetation and climate changes could be identified: (1) A shift from alpine desert to alpine steppe indicates a change from cold, dry conditions to warmer and more moist conditions at 14.8 cal. ka BP, (2) alpine steppe with tundra elements points to conditions of higher effective moisture and a stepwise warming climate at 13.6 cal. ka BP, (3) the appearance of high-alpine meadow vegetation indicates a further change towards increased moisture, but with colder temperatures, at 7.0 cal. ka BP, (4) the reoccurrence of alpine steppe with desert elements suggests a return to a significantly colder and drier phase at 6.3 cal. ka BP, and (5) the establishment of alpine steppe-meadow vegetation indicates a change back to relatively moist conditions at 2.2 cal. ka BP. To place the reconstructed climate inferences from the NE Tibetan Plateau into the context of Holocene moisture evolution across the Tibetan Plateau, I applied a five-scale moisture index and average link clustering to all available continuous pollen and non-pollen palaeoclimate records from the Tibetan Plateau, in an attempt to detect coherent regional and temporal patterns of moisture evolution on the Plateau. However, no common temporal or spatial pattern of moisture evolution during the Holocene could be detected, which can be assigned to the complex responses of different proxies to environmental changes in an already very heterogeneous mountain landscape, where minor differences in elevation can result in marked variations in microenvironments. Focusing on the past 200 years, I analysed the sedimentary records (LC6 Lake 29.5°N, 94.3°E, 4132 m asl; and Wuxu Lake 29.9°N, 101.1°E, 3705 m asl) from the southeastern Tibetan Plateau. I found that despite presumed significant temperature increases over that period, pollen and diatom records from the SE Tibetan Plateau reveal only very subtle changes throughout their profiles. The compositional species turnover investigated over the last 200 years appears relatively low in comparison to the species reorganisations during the Holocene. The results indicate that climatically induced ecological thresholds are not yet crossed, but that human activity has an increasing influence, particularly on the terrestrial ecosystem. Forest clearances and reforestation have not caused forest decline in our study area, but a conversion of natural forests to semi-natural secondary forests. The results from the numerical proxy comparison of the two sets of two pairs of Tibetan lakes indicate that the use of different proxies and the work with palaeo-ecological records from different lake types can cause deviant stories of inferred change. Irrespective of the timescale (Holocene or last 200 years) or region (SE or NE Tibetan Plateau) analysed, the agreement in terms of the direction, timing, and magnitude of change between the corresponding terrestrial data sets is generally better than the match between the corresponding lacustrine data sets, suggesting that lacustrine proxies may partly be influenced by in-lake or local catchment processes whereas the terrestrial proxy reflects a more regional climatic signal. The current disaccord on coherent temporal and spatial climate patterns on the Tibetan Plateau can partly be ascribed to the complexity of proxy response and lake systems on the Tibetan Plateau. Therefore, a multi-proxy, multi-site approach is important in order to gain a reliable climate interpretation for the complex mountain landscape of the Tibetan Plateau.},
  language  = {en}
}
@phdthesis{Olivotos2023,
  author    = {Olivotos, Spyros-Christos},
  title     = {Reconstructing the Landscape Evolution of South Central Africa by Surface Exposure Dating of Waterfalls},
  doi       = {10.25932/publishup-60169},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-601699},
  school      = {Universit{\"a}t Potsdam},
  pages     = {159},
  year      = {2023},
  abstract  = {The East African Rift System (EARS) is a significant example of active tectonics, which provides opportunities to examine the stages of continental faulting and landscape evolution. The southwest extension of the EARS is one of the most significant examples of active tectonics nowadays, however, seismotectonic research in the area has been scarce, despite the fundamental importance of neotectonics. Our first study area is located between the Northern Province of Zambia and the southeastern Katanga Province of the Democratic Republic of Congo. Lakes Mweru and Mweru Wantipa are part of the southwest extension of the EARS. Fault analysis reveals that, since the Miocene, movements along the active Mweru-Mweru Wantipa Fault System (MMFS) have been largely responsible for the reorganization of the landscape and the drainage patterns across the southwestern branch of the EARS. To investigate the spatial and temporal patterns of fluvial-lacustrine landscape development, we determined in-situ cosmogenic 10Be and 26Al in a total of twenty-six quartzitic bedrock samples that were collected from knickpoints across the Mporokoso Plateau (south of Lake Mweru) and the eastern part of the Kundelungu Plateau (north of Lake Mweru). Samples from the Mporokoso Plateau and close to the MMFS provide evidence of temporary burial. By contrast, surfaces located far from the MMFS appear to have remained uncovered since their initial exposure as they show consistent 10Be and 26Al exposure ages ranging up to ~830 ka. Reconciliation of the observed burial patterns with morphotectonic and stratigraphic analysis reveals the existence of an extensive paleo-lake during the Pleistocene. Through hypsometric analyses of the dated knickpoints, the potential maximum water level of the paleo-lake is constrained to ~1200 m asl (present lake lavel: 917 m asl). High denudation rates (up to ~40 mm ka-1) along the eastern Kundelungu Plateau suggest that footwall uplift, resulting from normal faulting, caused river incision, possibly controlling paleo-lake drainage. The lake level was reduced gradually reaching its current level at ~350 ka. Parallel to the MMFS in the north, the Upemba Fault System (UFS) extends across the southeastern Katanga Province of the Democratic Republic of Congo. This part of our research is focused on the geomorphological behavior of the Kiubo Waterfalls. The waterfalls are the currently active knickpoint of the Lufira River, which flows into the Upemba Depression. Eleven bedrock samples along the Lufira River and its tributary stream, Luvilombo River, were collected. In-situ cosmogenic 10Be and 26Al were used in order to constrain the K constant of the Stream Power Law equation. Constraining the K constant allowed us to calculate the knickpoint retreat rate of the Kiubo Waterfalls at ~0.096 m a-1. Combining the calculated retreat rate of the knickpoint with DNA sequencing from fish populations, we managed to present extrapolation models and estimate the location of the onset of the Kiubo Waterfalls, revealing its connection to the seismicity of the UFS.},
  language  = {en}
}
@phdthesis{Demircioglu2007,
  author    = {Demircioglu, Aydin},
  title     = {Reconstruction of deligne classes and cocycles},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-13755},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {In der vorliegenden Arbeit verallgemeinern wir im Wesentlichen zwei Theoreme von Mackaay-Picken und Picken (2002, 2004). Im ihrem Artikel zeigen Mackaay und Picken,dass es eine bijektive Korrespodenz zwischen Deligne 2-Klassen \$\xi \in \check{H}^2(M, \mathcal{D}^2)\$ und Holonomie Abbildungen von der zweiten d{\"u}nnen Homotopiegruppe \$\pi_2^2(M)\$ in die abelsche Gruppe \$U(1)\$ gibt. Im zweiten Artikel wird eine Verallgemeinerung dieses Theorems bewiesen: Picken zeigt, dass es eine Bijektion gibt zwischen Deligne 2-Kozykeln und gewissen 2-dimensionalen topologischen Quantenfeldtheorien. In dieser Arbeit zeigen wir, dass diese beiden Theoreme in allen Dimensionen gelten.Wir betrachten zun{\"a}chst den Holonomie Fall und k{\"o}nnen mittels simplizialen Methoden nachweisen, dass die Gruppe der glatten Deligne \$d\$-Klassen isomorph ist zu der Gruppe der glatten Holonomie Abbildungen von der \$d\$-ten d{\"u}nnen Homotopiegruppe \$\pi_d^d(M)\$ nach \$U(1)\$, sofern \$M\$ eine \$(d-1)\$-zusammenh{\"a}ngende Mannigfaltigkeit ist. Wir vergleichen dieses Resultat mit einem Satz von Gajer (1999). Gajer zeigte, dass jede Deligne \$d\$-Klasse durch eine andere Klasse von Holonomie-Abbildungen rekonstruiert werden kann, die aber nicht nur Holonomien entlang von Sph{\"a}ren, sondern auch entlang von allgemeinen \$d\$-Mannigfaltigkeiten in \$M\$ enth{\"a}lt. Dieser Zugang ben{\"o}tigt dann aber nicht, dass \$M\$ hoch-zusammenh{\"a}ngend ist. Wir zeigen, dass im Falle von flachen Deligne \$d\$-Klassen unser Rekonstruktionstheorem sich von Gajers unterscheidet, sofern \$M\$ nicht als \$(d-1)\$, sondern nur als \$(d-2)\$-zusammenh{\"a}ngend angenommen wird. Stiefel Mannigfaltigkeiten besitzen genau diese Eigenschaft, und wendet man unser Theorem auf diese an und vergleicht das Resultat mit dem von Gajer, so zeigt sich, dass es zuviele Deligne Klassen rekonstruiert. Dies bedeutet, dass unser Rekonstruktionsthreorem ohne die Zusatzbedingungen an die Mannigfaltigkeit M nicht auskommt, d.h. unsere Rekonstruktion ben{\"o}tigt zwar weniger Informationen {\"u}ber die Holonomie entlang von d-dimensionalen Mannigfaltigkeiten, aber daf{\"u}r muss M auch \$(d-1)\$-zusammenh{\"a}ngend angenommen werden. Wir zeigen dann, dass auch das zweite Theorem verallgemeinert werden kann: Indem wir das Konzept einer Picken topologischen Quantenfeldtheorie in beliebigen Dimensionen einf{\"u}hren, k{\"o}nnen wir nachweisen, dass jeder Deligne \$d\$-Kozykel eine solche \$d\$-dimensionale Feldtheorie mit zwei besonderen Eigenschaften, der d{\"u}nnen Invarianz und der Glattheit, induziert. Wir beweisen, dass jede \$d\$-dimensionale topologische Quantenfeldtheorie nach Picken mit diesen zwei Eigenschaften auch eine Deligne \$d\$-Klasse definiert und pr{\"u}fen nach, dass diese Konstruktion sowohl surjektiv als auch injektiv ist. Demzufolge sind beide Gruppen isomorph.},
  language  = {en}
}
@phdthesis{Wendi2018,
  author    = {Wendi, Dadiyorto},
  title     = {Recurrence Plots and Quantification Analysis of Flood Runoff Dynamics},
  doi       = {10.25932/publishup-43191},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-431915},
  school      = {Universit{\"a}t Potsdam},
  pages     = {114},
  year      = {2018},
  abstract  = {This paper introduces a novel measure to assess similarity between event hydrographs. It is based on Cross Recurrence Plots and Recurrence Quantification Analysis which have recently gained attention in a range of disciplines when dealing with complex systems. The method attempts to quantify the event runoff dynamics and is based on the time delay embedded phase space representation of discharge hydrographs. A phase space trajectory is reconstructed from the event hydrograph, and pairs of hydrographs are compared to each other based on the distance of their phase space trajectories. Time delay embedding allows considering the multi-dimensional relationships between different points in time within the event. Hence, the temporal succession of discharge values is taken into account, such as the impact of the initial conditions on the runoff event. We provide an introduction to Cross Recurrence Plots and discuss their parameterization. An application example based on flood time series demonstrates how the method can be used to measure the similarity or dissimilarity of events, and how it can be used to detect events with rare runoff dynamics. It is argued that this methods provides a more comprehensive approach to quantify hydrograph similarity compared to conventional hydrological signatures.},
  language  = {en}
}
@phdthesis{Thiel2004,
  author    = {Thiel, Marco},
  title     = {Recurrences : exploiting naturally occurring analogues},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0001633},
  school      = {Universit{\"a}t Potsdam},
  year      = {2004},
  abstract  = {In der vorliegenden Arbeit wird die Wiederkehr im Phasenraum ausgenutzt. Dabei werden drei Hauptresultate besprochen. 1. Die Wiederkehr erlaubt die Vorhersagbarkeit des Systems zu quantifizieren. 2. Die Wiederkehr enthaelt (unter bestimmten Voraussetzungen) s{\"a}mtliche relevante Information {\"u}ber die Dynamik im Phasenraum 3. Die Wiederkehr erlaubt die Erzeugung dynamischer Ersatzdaten.},
  language  = {en}
}
@phdthesis{NgamgaKetchamen2008,
  author    = {Ngamga Ketchamen, Joelle Eulalie},
  title     = {Recurrences and strange nonchaotic attractors},
  address   = {Potsdam},
  pages     = {II, 44 S., [18] Bl. : graph. Darst.},
  year      = {2008},
  language  = {en}
}
@phdthesis{Braun2023,
  author    = {Braun, Tobias},
  title     = {Recurrences in past climates},
  doi       = {10.25932/publishup-58690},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-586900},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xxviii, 251},
  year      = {2023},
  abstract  = {Our ability to predict the state of a system relies on its tendency to recur to states it has visited before. Recurrence also pervades common intuitions about the systems we are most familiar with: daily routines, social rituals and the return of the seasons are just a few relatable examples. To this end, recurrence plots (RP) provide a systematic framework to quantify the recurrence of states. Despite their conceptual simplicity, they are a versatile tool in the study of observational data. The global climate is a complex system for which an understanding based on observational data is not only of academical relevance, but vital for the predurance of human societies within the planetary boundaries. Contextualizing current global climate change, however, requires observational data far beyond the instrumental period. The palaeoclimate record offers a valuable archive of proxy data but demands methodological approaches that adequately address its complexities. In this regard, the following dissertation aims at devising novel and further developing existing methods in the framework of recurrence analysis (RA). The proposed research questions focus on using RA to capture scale-dependent properties in nonlinear time series and tailoring recurrence quantification analysis (RQA) to characterize seasonal variability in palaeoclimate records ('Palaeoseasonality'). In the first part of this thesis, we focus on the methodological development of novel approaches in RA. The predictability of nonlinear (palaeo)climate time series is limited by abrupt transitions between regimes that exhibit entirely different dynamical complexity (e.g. crossing of 'tipping points'). These possibly depend on characteristic time scales. RPs are well-established for detecting transitions and capture scale-dependencies, yet few approaches have combined both aspects. We apply existing concepts from the study of self-similar textures to RPs to detect abrupt transitions, considering the most relevant time scales. This combination of methods further results in the definition of a novel recurrence based nonlinear dependence measure. Quantifying lagged interactions between multiple variables is a common problem, especially in the characterization of high-dimensional complex systems. The proposed 'recurrence flow' measure of nonlinear dependence offers an elegant way to characterize such couplings. For spatially extended complex systems, the coupled dynamics of local variables result in the emergence of spatial patterns. These patterns tend to recur in time. Based on this observation, we propose a novel method that entails dynamically distinct regimes of atmospheric circulation based on their recurrent spatial patterns. Bridging the two parts of this dissertation, we next turn to methodological advances of RA for the study of Palaeoseasonality. Observational series of palaeoclimate 'proxy' records involve inherent limitations, such as irregular temporal sampling. We reveal biases in the RQA of time series with a non-stationary sampling rate and propose a correction scheme. In the second part of this thesis, we proceed with applications in Palaeoseasonality. A review of common and promising time series analysis methods shows that numerous valuable tools exist, but their sound application requires adaptions to archive-specific limitations and consolidating transdisciplinary knowledge. Next, we study stalagmite proxy records from the Central Pacific as sensitive recorders of mid-Holocene El Ni{\~n}o-Southern Oscillation (ENSO) dynamics. The records' remarkably high temporal resolution allows to draw links between ENSO and seasonal dynamics, quantified by RA. The final study presented here examines how seasonal predictability could play a role for the stability of agricultural societies. The Classic Maya underwent a period of sociopolitical disintegration that has been linked to drought events. Based on seasonally resolved stable isotope records from Yok Balum cave in Belize, we propose a measure of seasonal predictability. It unveils the potential role declining seasonal predictability could have played in destabilizing agricultural and sociopolitical systems of Classic Maya populations. The methodological approaches and applications presented in this work reveal multiple exciting future research avenues, both for RA and the study of Palaeoseasonality.},
  language  = {en}
}
@phdthesis{Clodong2004,
  author    = {Clodong, S{\´e}bastien},
  title     = {Recurrent outbreaks in ecology : chaotic dynamics in complex networks},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0001626},
  school      = {Universit{\"a}t Potsdam},
  year      = {2004},
  abstract  = {Gegenstand der Dissertation ist die Untersuchung von wiederkehrenden Ausbr{\"u}chen (wie z.B. Epidemien) in der Natur. Dies gelang anhand von Modellen, die die Dynamik von Phytoplankton und die Ausbreitung von Krankheiten zwischen St{\"a}dten beschreiben. Diese beide Systeme bilden hervorragende Beispiele f{\"u}r solche Ph{\"a}nomene. Die Frage, ob die in der Zeit wiederkehrenden Ausbr{\"u}che ein Ausdruck chaotischer Dynamik sein k{\"o}nnen, ist aktuell in der {\"O}kologie und fasziniert Wissenschaftler dieser Disziplin. Wir konnten zeigen, dass sich das Plankton-Modell im Falle von periodischem Antreiben {\"u}ber die N{\"a}hrstoffe in einem chaotischen Regime befindet. Diese Dynamik wurde als die komplexe Wechselwirkung zweier Oszillatoren verstanden. Ebenfalls wurde die Ausbreitung von Epidemien in Netzwerken wechselwirkender St{\"a}dte mit unterschiedlichen Gr{\"o}ssen untersucht. Daf{\"u}r wurde zun{\"a}chst die Kopplung zwischen zwei St{\"a}dten als Verh{\"a}ltnis der Stadtgr{\"o}ssen eingef{\"u}hrt. Es konnte gezeigt werden, dass das System sich in einem globalen zweij{\"a}hrigen Zyklus, der auch in den realen Daten beobachtet wird, befinden kann. Der Effekt von Heterogenit{\"a}t in der Gr{\"o}sseverteilung ist durch gewichtete Kopplung von generischen Modellen (Zelt- und Logistische Abbildung) in Netzwerken im Detail untersucht worden. Eine neue Art von Kopplungsfunktion mit nichtlinearer S{\"a}ttigung wurde eingef{\"u}hrt, um die Stabilit{\"a}t des Systems zu gew{\"a}hrleisten. Diese Kopplung beinhaltet einen Parameter, der es erlaubt, die Netzwerktopologie von globaler Kopplung in gerichtete Netzwerke gleichm{\"a}ssig umzuwandeln. Die Dynamik des Systems wurde anhand von Bifurkationsdiagrammen untersucht. Zum Verst{\"a}ndnis dieser Dynamik wurde eine effektive Theorie, die die beobachteten Bifurkationen sehr gut nachahmt, entwickelt.},
  language  = {en}
}
@phdthesis{Stepanov2005,
  author    = {Stepanov, Arthur},
  title     = {Recursion in natural language syntax: a minimalist perspective},
  address   = {Potsdam},
  pages     = {166 S.},
  year      = {2005},
  language  = {en}
}
@phdthesis{Cheng2016,
  author    = {Cheng, Yuan},
  title     = {Recursive state estimation in dynamical systems},
  school      = {Universit{\"a}t Potsdam},
  pages     = {84},
  year      = {2016},
  language  = {en}
}
@phdthesis{Jin1998,
  author    = {Jin, Wen},
  title     = {Redox reaction of proteins at functionalized electrode},
  pages     = {[5], 114, III S.},
  year      = {1998},
  language  = {en}
}
@phdthesis{Siemiatkowska2020,
  author    = {Siemiatkowska, Beata},
  title     = {Redox signalling in plants},
  doi       = {10.25932/publishup-48911},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-489119},
  school      = {Universit{\"a}t Potsdam},
  pages     = {127},
  year      = {2020},
  abstract  = {Once proteins are synthesized, they can additionally be modified by post-translational modifications (PTMs). Proteins containing reactive cysteine thiols, stabilized in their deprotonated form due to their local environment as thiolates (RS-), serve as redox sensors by undergoing a multitude of oxidative PTMs (Ox-PTMs). Ox-PTMs such as S-nitrosylation or formation of inter- or intra-disulfide bridges induce functional changes in these proteins. Proteins containing cysteines, whose thiol oxidation state regulates their functions, belong to the so-called redoxome. Such Ox-PTMs are controlled by site-specific cellular events that play a crucial role in protein regulation, affecting enzyme catalytic sites, ligand binding affinity, protein-protein interactions or protein stability. Reversible protein thiol oxidation is an essential regulatory mechanism of photosynthesis, metabolism, and gene expression in all photosynthetic organisms. Therefore, studying PTMs will remain crucial for understanding plant adaptation to external stimuli like fluctuating light conditions. Optimizing methods suitable for studying plants Ox-PTMs is of high importance for elucidation of the redoxome in plants. This study focusses on thiol modifications occurring in plant and provides novel insight into in vivo redoxome of Arabidopsis thaliana in response to light vs. dark. This was achieved by utilizing a resin-assisted thiol enrichment approach. Furthermore, confirmation of candidates on the single protein level was carried out by a differential labelling approach. The thiols and disulfides were differentially labelled, and the protein levels were detected using immunoblot analysis. Further analysis was focused on light-reduced proteins. By the enrichment approach many well studied redox-regulated proteins were identified. Amongst those were fructose 1,6-bisphosphatase (FBPase) and sedoheptulose-1,7-bisphosphatase (SBPase) which have previously been described as thioredoxin system targeted enzymes. The redox regulated proteins identified in the current study were compared to several published, independent results showing redox regulated proteins in Arabidopsis leaves, root, mitochondria and specifically S-nitrosylated proteins. These proteins were excluded as potential new candidates but remain as a proof-of-concept to the enrichment experiments to be effective. Additionally, CSP41A and CSP41B proteins, which emerged from this study as potential targets of redox-regulation, were analyzed by Ribo-Seq. The active translatome study of csp41a mutant vs. wild-type showed most of the significant changes at end of the night, similarly as csp41b. Yet, in both mutants only several chloroplast-encoded genes were altered. Further studies of CSP41A and CSP41B proteins are needed to reveal their functions and elucidate the role of redox regulation of these proteins.},
  language  = {en}
}
@phdthesis{Kolbe2005,
  author    = {Kolbe, Anna},
  title     = {Redox-regulation of starch and lipid synthesis in leaves},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-6388},
  school      = {Universit{\"a}t Potsdam},
  year      = {2005},
  abstract  = {Post-translational redox-regulation is a well-known mechanism to regulate enzymes of the Calvin cycle, oxidative pentose phosphate cycle, NADPH export and ATP synthesis in response to light. The aim of the present thesis was to investigate whether a similar mechanism is also regulating carbon storage in leaves. Previous studies have shown that the key-regulatory enzyme of starch synthesis, ADPglucose pyrophosphorylase (AGPase) is inactivated by formation of an intermolecular disulfide bridge between the two catalytic subunits (AGPB) of the heterotetrameric holoenzyme in potato tubers, but the relevance of this mechanism to regulate starch synthesis in leaves was not investigated. The work presented in this thesis shows that AGPase is subject to post-translational redox-regulation in leaves of pea, potato and Arabidopsis in response to day night changes. Light was shown to trigger posttranslational redox-regulation of AGPase. AGPB was rapidly converted from a dimer to a monomer when isolated pea chloroplasts were illuminated and from a monomer to a dimer when preilluminated leaves were darkened. Conversion of AGPB from dimer to monomer was accompanied by an increase in activity due to changes in the kinetik properties of the enzyme. Studies with pea chloroplast extracts showed that AGPase redox-activation is mediated by thioredoxins f and m from spinach in-vitro. In a further set of experiments it was shown that sugars provide a second input leading to AGPase redox activation and increased starch synthesis and that they can act as a signal which is independent from light. External feeding of sugars such as sucrose or trehalose to Arabidopsis leaves in the dark led to conversion of AGPB from dimer to monomer and to an increase in the rate of starch synthesis, while there were no significant changes in the level of 3PGA, an allosteric activator of the enyzme, and in the NADPH/NADP+ ratio. Experiments with transgenic Arabidopsis plants with altered levels of trehalose 6-phosphate (T6P), the precursor of trehalose synthesis, provided genetic evidence that T6P rather than trehalose is leading to AGPase redox-activation. Compared to Wt, leaves expressing E.coli trehalose-phosphate synthase (TPS) in the cytosol showed increased activation of AGPase and higher starch level during the day, while trehalose-phosphate phosphatase (TPP) overexpressing leaves showed the opposite. These changes occurred independently of changes in sugar and sugar-phosphate levels and NADPH/NADP+ ratio. External supply of sucrose to Wt and TPS-overexpressing leaves led to monomerisation of AGPB, while this response was attenuated in TPP expressing leaves, indicating that T6P is involved in the sucrose-dependent redox-activation of AGPase. To provide biochemical evidence that T6P promotes redox-activation of AGPase independently of cytosolic elements, T6P was fed to intact isolated chloroplasts for 15 min. incubation with concentrations down to 100 µM of T6P, but not with sucrose 6-phosphate, sucrose, trehalose or Pi as controls, significantly and specifically increased AGPB monomerisation and AGPase activity within 15 minutes, implying T6P as a signal reporting the cytosolic sugar status to the chloroplast. The response to T6P did not involve changes in the NADPH/NADP+ ratio consistent with T6P modulating redox-transfer to AGPase independently of changes in plastidial redox-state. Acetyl-CoA carboxylase (ACCase) is known as key-regulatory enzyme of fatty acid and lipid synthesis in plants. At the start of the present thesis there was mainly in vitro evidence in the literature showing redox-regulation of ACCase by DTT, and thioredoxins f and m. In the present thesis the in-vivo relevance of this mechanism to regulate lipid synthesis in leaves was investigated. ACCase activity measurement in leaf tissue collected at the end of the day and night in Arabidopsis leaves revealed a 3-fold higher activation state of the enzyme in the light than in the dark. Redox-activation was accompanied by change in kinetic properties of ACCase, leading to an increase affinity to its substrate acetyl-CoA . In further experiments, DTT as well as sucrose were fed to leaves, and both treatments led to a stimulation in the rate of lipid synthesis accompanied by redox-activation of ACCase and decrease in acetyl-CoA content. In a final approach, comparison of metabolic and transcript profiling after DTT feeding and after sucrose feeding to leaves provided evidence that redox-modification is an important regulatory mechanism in central metabolic pathways such as TCA cycle and amino acid synthesis, which acts independently of transcript levels.},
  subject      = {Redoxreaktion},
  language  = {en}
}
@phdthesis{Lutz2016,
  author    = {Lutz, Johannes},
  title     = {Reducing anger and aggession through eliciting incompatible emotions},
  pages     = {299},
  year      = {2016},
  language  = {en}
}
@phdthesis{Bartz2022,
  author    = {Bartz, Christian},
  title     = {Reducing the annotation burden: deep learning for optical character recognition using less manual annotations},
  doi       = {10.25932/publishup-55540},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-555407},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xxiv, 183},
  year      = {2022},
  abstract  = {Text is a ubiquitous entity in our world and daily life. We encounter it nearly everywhere in shops, on the street, or in our flats. Nowadays, more and more text is contained in digital images. These images are either taken using cameras, e.g., smartphone cameras, or taken using scanning devices such as document scanners. The sheer amount of available data, e.g., millions of images taken by Google Streetview, prohibits manual analysis and metadata extraction. Although much progress was made in the area of optical character recognition (OCR) for printed text in documents, broad areas of OCR are still not fully explored and hold many research challenges. With the mainstream usage of machine learning and especially deep learning, one of the most pressing problems is the availability and acquisition of annotated ground truth for the training of machine learning models because obtaining annotated training data using manual annotation mechanisms is time-consuming and costly. In this thesis, we address of how we can reduce the costs of acquiring ground truth annotations for the application of state-of-the-art machine learning methods to optical character recognition pipelines. To this end, we investigate how we can reduce the annotation cost by using only a fraction of the typically required ground truth annotations, e.g., for scene text recognition systems. We also investigate how we can use synthetic data to reduce the need of manual annotation work, e.g., in the area of document analysis for archival material. In the area of scene text recognition, we have developed a novel end-to-end scene text recognition system that can be trained using inexact supervision and shows competitive/state-of-the-art performance on standard benchmark datasets for scene text recognition. Our method consists of two independent neural networks, combined using spatial transformer networks. Both networks learn together to perform text localization and text recognition at the same time while only using annotations for the recognition task. We apply our model to end-to-end scene text recognition (meaning localization and recognition of words) and pure scene text recognition without any changes in the network architecture. In the second part of this thesis, we introduce novel approaches for using and generating synthetic data to analyze handwriting in archival data. First, we propose a novel preprocessing method to determine whether a given document page contains any handwriting. We propose a novel data synthesis strategy to train a classification model and show that our data synthesis strategy is viable by evaluating the trained model on real images from an archive. Second, we introduce the new analysis task of handwriting classification. Handwriting classification entails classifying a given handwritten word image into classes such as date, word, or number. Such an analysis step allows us to select the best fitting recognition model for subsequent text recognition; it also allows us to reason about the semantic content of a given document page without the need for fine-grained text recognition and further analysis steps, such as Named Entity Recognition. We show that our proposed approaches work well when trained on synthetic data. Further, we propose a flexible metric learning approach to allow zero-shot classification of classes unseen during the network's training. Last, we propose a novel data synthesis algorithm to train off-the-shelf pixel-wise semantic segmentation networks for documents. Our data synthesis pipeline is based on the famous Style-GAN architecture and can synthesize realistic document images with their corresponding segmentation annotation without the need for any annotated data!},
  language  = {en}
}
@phdthesis{Fu2012,
  author    = {Fu, Han-Yi},
  title     = {Reduction of PSII accumulation through manipulating psbD translational initiation},
  address   = {Potsdam},
  pages     = {VII, 130 S.},
  year      = {2012},
  language  = {en}
}
@phdthesis{Wang2020,
  author    = {Wang, Xia},
  title     = {Reef ecosystem recovery following the Middle Permian (Capitanian) mass extinction},
  doi       = {10.25932/publishup-48750},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-487502},
  school      = {Universit{\"a}t Potsdam},
  pages     = {XI, 144},
  year      = {2020},
  abstract  = {To find out the future of nowadays reef ecosystem turnover under the environmental stresses such as global warming and ocean acidification, analogue studies from the geologic past are needed. As a critical time of reef ecosystem innovation, the Permian-Triassic transition witnessed the most severe demise of Phanerozoic reef builders, and the establishment of modern style symbiotic relationships within the reef-building organisms. Being the initial stage of this transition, the Middle Permian (Capitanian) mass extinction coursed a reef eclipse in the early Late Permian, which lead to a gap of understanding in the post-extinction Wuchiapingian reef ecosystem, shortly before the radiation of Changhsingian reefs. Here, this thesis presents detailed biostratigraphic, sedimentological, and palaeoecological studies of the Wuchiapingian reef recovery following the Middle Permian (Capitanian) mass extinction, on the only recorded Wuchiapingian reef setting, outcropping in South China at the Tieqiao section. Conodont biostratigraphic zonations were revised from the Early Permian Artinskian to the Late Permian Wuchiapingian in the Tieqiao section. Twenty main and seven subordinate conodont zones are determined at Tieqiao section including two conodont zone below and above the Tieqiao reef complex. The age of Tieqiao reef was constrained as early to middle Wuchiapingian. After constraining the reef age, detailed two-dimensional outcrop mapping combined with lithofacies study were carried out on the Wuchiapingian Tieqiao Section to investigate the reef growth pattern stratigraphically as well as the lateral changes of reef geometry on the outcrop scale. Semi-quantitative studies of the reef-building organisms were used to find out their evolution pattern within the reef recovery. Six reef growth cycles were determined within six transgressive-regressive cycles in the Tieqiao section. The reefs developed within the upper part of each regressive phase and were dominated by different biotas. The timing of initial reef recovery after the Middle Permian (Capitanian) mass extinction was updated to the Clarkina leveni conodont zone, which is earlier than previous understanding. Metazoans such as sponges were not the major components of the Wuchiapingian reefs until the 5th and 6th cycles. So, the recovery of metazoan reef ecosystem after the Middle Permian (Capitanian) mass extinction was obviously delayed. In addition, although the importance of metazoan reef builders such as sponges did increase following the recovery process, encrusting organisms such as Archaeolithoporella and Tubiphytes, combined with microbial carbonate precipitation, still played significant roles to the reef building process and reef recovery after the mass extinction. Based on the results from outcrop mapping and sedimentological studies, quantitative composition analysis of the Tieqiao reef complex were applied on selected thin sections to further investigate the functioning of reef building components and the reef evolution after the Middle Permian (Capitanian) mass extinction. Data sets of skeletal grains and whole rock components were analyzed. The results show eleven biocommunity clusters/eight rock composition clusters dominated by different skeletal grains/rock components. Sponges, Archaeolithoporella and Tubiphytes were the most ecologically important components within the Wuchiapingian Tieqiao reef, while the clotted micrites and syndepositional cements are the additional important rock components for reef cores. The sponges were important within the whole reef recovery. Tubiphytes were broadly distributed in different environments and played a key-role in the initial reef communities. Archaeolithoporella concentrated in the shallower part of reef cycles (i.e., the upper part of reef core) and was functionally significant for the enlargement of reef volume. In general, the reef recovery after the Middle Permian (Capitanian) mass extinction has some similarities with the reef recovery following the end-Permian mass extinction. It shows a delayed recovery of metazoan reefs and a stepwise recovery pattern that was controlled by both ecological and environmental factors. The importance of encrusting organisms and microbial carbonates are also similar to most of the other post-extinction reef ecosystems. These findings can be instructive to extend our understanding of the reef ecosystem evolution under environmental perturbation or stresses.},
  language  = {en}
}
@phdthesis{Arvind2021,
  author    = {Arvind, Malavika},
  title     = {Regarding the role of aggregation and structural order on the mechanism of molecular doping of semiconducting polymers},
  doi       = {10.25932/publishup-50060},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-500606},
  school      = {Universit{\"a}t Potsdam},
  pages     = {vii, 153},
  year      = {2021},
  abstract  = {Polymeric semiconductors are strong contenders for replacing traditional inorganic semiconductors in electronic applications requiring low power, low cost and flexibility, such as biosensors, flexible solar cells and electronic displays. Molecular doping has the potential to enable this revolution by improving the conductivity and charge transport properties of this class of materials. Despite decades of research in this field, gaps in our understanding of the nature of dopant-polymer interactions has resulted in limited commercialization of this technology. This work aims at providing a deeper insight into the underlying mechanisms of molecular p-doping of semiconducting polymers in the solution and solid-state, and thereby bring the scientific community closer to realizing the dream of making organic semiconductors commonplace in the electronics industry. The role of 1) dopant size/shape, 2) polymer chain aggregation and 3) charge delocalization on the doping mechanism and efficiency is addressed using optical (UV-Vis-NIR) and electron paramagnetic resonance (EPR) spectroscopies. By conducting a comprehensive study of the nature and concentration of the doping-induced species in solutions of the polymer poly(3-hexylthiophene) (P3HT) with 3 different dopants, we identify the unique optical signatures of the delocalized polaron, localized polaron and charge-transfer complex, and report their extinction coefficient values. Furthermore, with X-ray diffraction, atomic force microscopy and electrical conductivity measurements, we study the impact of processing technique and doping mechanism on the morphology and thereby, charge transport through the doped films. This work demonstrates that the doping mechanism and type of doping-induced species formed are strongly influenced by the polymer backbone arrangement rather than dopant shape/size. The ability of the polymer chain to aggregate is found to be crucial for efficient charge transfer (ionization) and polaron delocalization. At the same time, our results suggest that the high ionization efficiency of a dopant-polymer system in solution may subsequently hinder efficient charge transport in the solid-state due to the reduction in the fraction of tie chains, which enable charges to move efficiently between aggregated domains in the films. This study demonstrates the complex multifaceted nature of polymer doping while providing important hints for the future design of dopant-host systems and film fabrication techniques.},
  language  = {en}
}
@phdthesis{Kormann2015,
  author    = {Kormann, Christoph Martin},
  title     = {Regional climate change effects on hydroclimatic conditions in the Alpine region},
  school      = {Universit{\"a}t Potsdam},
  pages     = {129},
  year      = {2015},
  language  = {en}
}
@phdthesis{Bora2015,
  author    = {Bora, Sanjay Singh},
  title     = {Regionally adaptable ground-motion Prediction Equations (GMPEs) for seismic hazard analysis},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-88806},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xiv, 138},
  year      = {2015},
  abstract  = {Adjustment of empirically derived ground motion prediction equations (GMPEs), from a data- rich region/site where they have been derived to a data-poor region/site, is one of the major challenges associated with the current practice of seismic hazard analysis. Due to the fre- quent use in engineering design practices the GMPEs are often derived for response spectral ordinates (e.g., spectral acceleration) of a single degree of freedom (SDOF) oscillator. The functional forms of such GMPEs are based upon the concepts borrowed from the Fourier spectral representation of ground motion. This assumption regarding the validity of Fourier spectral concepts in the response spectral domain can lead to consequences which cannot be explained physically. In this thesis, firstly results from an investigation that explores the relationship between Fourier and response spectra, and implications of this relationship on the adjustment issues of GMPEs, are presented. The relationship between the Fourier and response spectra is explored by using random vibration theory (RVT), a framework that has been extensively used in earthquake engineering, for instance within the stochastic simulation framework and in the site response analysis. For a 5\% damped SDOF oscillator the RVT perspective of response spectra reveals that no one-to-one correspondence exists between Fourier and response spectral ordinates except in a limited range (i.e., below the peak of the response spectra) of oscillator frequencies. The high oscillator frequency response spectral ordinates are dominated by the contributions from the Fourier spectral ordinates that correspond to the frequencies well below a selected oscillator frequency. The peak ground acceleration (PGA) is found to be related with the integral over the entire Fourier spectrum of ground motion which is in contrast to the popularly held perception that PGA is a high-frequency phenomenon of ground motion. This thesis presents a new perspective for developing a response spectral GMPE that takes the relationship between Fourier and response spectra into account. Essentially, this frame- work involves a two-step method for deriving a response spectral GMPE: in the first step two empirical models for the FAS and for a predetermined estimate of duration of ground motion are derived, in the next step, predictions from the two models are combined within the same RVT framework to obtain the response spectral ordinates. In addition to that, a stochastic model based scheme for extrapolating the individual acceleration spectra beyond the useable frequency limits is also presented. To that end, recorded acceleration traces were inverted to obtain the stochastic model parameters that allow making consistent extrapola- tion in individual (acceleration) Fourier spectra. Moreover an empirical model, for a dura- tion measure that is consistent within the RVT framework, is derived. As a next step, an oscillator-frequency-dependent empirical duration model is derived that allows obtaining the most reliable estimates of response spectral ordinates. The framework of deriving the response spectral GMPE presented herein becomes a self-adjusting model with the inclusion of stress parameter (∆σ) and kappa (κ0) as the predictor variables in the two empirical models. The entire analysis of developing the response spectral GMPE is performed on recently compiled RESORCE-2012 database that contains recordings made from Europe, the Mediterranean and the Middle East. The presented GMPE for response spectral ordinates should be considered valid in the magnitude range of 4 ≤ MW ≤ 7.6 at distances ≤ 200 km.},
  language  = {en}
}
@phdthesis{Schumacher2019,
  author    = {Schumacher, Julia},
  title     = {Regulation and function of STERILE APETALA in Arabidopsis flower development},
  school      = {Universit{\"a}t Potsdam},
  pages     = {144},
  year      = {2019},
  abstract  = {STERILE APETALA (SAP) is known to be an essential regulator of flower development for over 20 years. Loss of SAP function in the model plant Arabidopsis thaliana is associated with a reduction of floral organ number, size and fertility. In accordance with the function of SAP during early flower development, its spatial expression in flowers is confined to meristematic stages and to developing ovules. However, to date, despite extensive research, the molecular function of SAP and the regulation of its spatio-temporal expression still remain elusive. In this work, amino acid sequence analysis and homology modeling revealed that SAP belongs to the rare class of plant F-box proteins with C-terminal WD40 repeats. In opisthokonts, this type of F-box proteins constitutes the substrate binding subunit of SCF complexes, which catalyze the ubiquitination of proteins to initiate their proteasomal degradation. With LC-MS/MS-based protein complex isolation, the interaction of SAP with major SCF complex subunits was confirmed. Additionally, candidate substrate proteins, such as the growth repressor PEAPOD 1 and 2 (PPD1/2), could be revealed during early stages of flower development. Also INDOLE-3-BUTYRIC ACID RESPONSE 5 (IBR5) was identified among putative interactors. Genetic analyses indicated that, different from substrate proteins, IBR5 is required for SAP function. Protein complex isolation together with transcriptome profiling emphasized that the SCFSAP complex integrates multiple biological processes, such as proliferative growth, vascular development, hormonal signaling and reproduction. Phenotypic analysis of sap mutant and SAP overexpressing plants positively correlated SAP function with plant growth during reproductive and vegetative development. Furthermore, to elaborate on the transcriptional regulation of SAP, publicly available ChIP-seq data of key floral homeotic proteins were reanalyzed. Here, it was shown that the MADS-domain transcription factors APETALA 1 (AP1), APETALA 3 (AP3), PISTILLATA (PI), AGAMOUS (AG) and SEPALLATA 3 (SEP3) bind to the SAP locus, which indicates that SAP is expressed in a floral organ-specific manner. Reporter gene analyses in combination with CRISPR/Cas9-mediated deletion of putative regulatory regions further demonstrated that the intron contains major regulatory elements of SAP in Arabidopsis thaliana. In conclusion, these data indicate that SAP is a pleiotropic developmental regulator that acts through tissue-specific destabilization of proteins. The presumed transcriptional regulation of SAP by the floral MADS-domain transcription factors could provide a missing link between the specification of floral organ identity and floral organ growth pathways.},
  language  = {en}
}
@phdthesis{Mubeen2018,
  author    = {Mubeen, Umarah},
  title     = {Regulation of central carbon and nitrogen metabolism by Target of Rapamycin (TOR) kinase in Chlamydomonas reinhardtii},
  school      = {Universit{\"a}t Potsdam},
  pages     = {vii, 153},
  year      = {2018},
  abstract  = {The highly conserved protein complex containing the Target of Rapamycin (TOR) kinase is known to integrate intra- and extra-cellular stimuli controlling nutrient allocation and cellular growth. This thesis describes three studies aimed to understand how TOR signaling pathway influences carbon and nitrogen metabolism in Chlamydomonas reinhardtii. The first study presents a time-resolved analysis of the molecular and physiological features across the diurnal cycle. The inhibition of TOR leads to 50\% reduction in growth followed by nonlinear delays in the cell cycle progression. The metabolomics analysis showed that the growth repression is mainly driven by differential carbon partitioning between anabolic and catabolic processes. Furthermore, the high accumulation of nitrogen-containing compounds indicated that TOR kinase controls the carbon to nitrogen balance of the cell, which is responsible for biomass accumulation, growth and cell cycle progression. In the second study the cause of the high accumulation of amino acids is explained. For this purpose, the effect of TOR inhibition on Chlamydomonas was examined under different growth regimes using stable 13C- and 15N-isotope labeling. The data clearly showed that an increased nitrogen uptake is induced within minutes after the inhibition of TOR. Interestingly, this increased N-influx is accompanied by increased activities of nitrogen assimilating enzymes. Accordingly, it was concluded that TOR inhibition induces de-novo amino acid synthesis in Chlamydomonas. The recognition of this novel process opened an array of questions regarding potential links between central metabolism and TOR signaling. Therefore a detailed phosphoproteomics study was conducted to identify the potential substrates of TOR pathway regulating central metabolism. Interestingly, some of the key enzymes involved in carbon metabolism as well as amino acid synthesis exhibited significant changes in the phosphosite intensities immediately after TOR inhibition. Altogether, these studies provide a) detailed insights to metabolic response of Chlamydomonas to TOR inhibition, b) identification of a novel process causing rapid upshifts in amino acid levels upon TOR inhibition and c) finally highlight potential targets of TOR signaling regulating changes in central metabolism. Further biochemical and molecular investigations could confirm these observations and advance the understanding of growth signaling in microalgae.},
  language  = {en}
}
@phdthesis{Sarem2015,
  author    = {Sarem, Zeinab},
  title     = {Regulation of IGF-1 bioactivity by dietary hormones, impact of glucagon and insulin-induced hypoglycemia},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-82198},
  school      = {Universit{\"a}t Potsdam},
  pages     = {IX, 64, IV, XIII},
  year      = {2015},
  abstract  = {Der Zusammenhang zwischen Ern{\"a}hrung und der Entwicklung von chronischen Krankenheiten wie metabolischem Syndrom, Diabetes mellitus, Krebs und kardiovaskul{\"a}ren Erkrankungen wurde untersucht. Ver{\"a}nderungen der GH-IGF-1 Achse in Verbindung mit ern{\"a}hrungsbedingten Erkrankungen wurden fr{\"u}her beschrieben. Das Wechselspiel zwischen GH, gesamt IGF-1 und verschiedenen hemmenden und stimulierenden IGF-1 bindenden Proteinen (IGFBPs) bestimmt die IGF-1 Bioaktivit{\"a}t, die als die F{\"a}higkeit von IGF-1 die Phosphorylierung von seinem Rezeptor und folglich seinem Signalsweg zu induzieren, identifiziert ist. Deshalb reicht die Messung der IGF-1 Bioaktivit{\"a}t aus, um {\"A}nderungen des GH-IGF-1 Systems darzustellen. Studien deuten darauf hin, dass proteinreiche Di{\"a}t, gekennzeichnet durch erh{\"o}hte Glukagonsekretion, und Insulin-induzierte Hypoglyk{\"a}mie die Sterblichkeit erh{\"o}hen, und die Mechanismen sind unklar. Sowohl Glukagon als auch Insulin-induzierte Hypoglyk{\"a}mie stimulieren die GH Sekretion. Das Ziel der vorliegenden Studie war, die Wirkung von Glucagon und Insulin-induzierter Hypoglyk{\"a}mie auf die IGF-1 -Bioaktivit{\"a}t als m{\"o}gliche Mechanismen zu characterizieren. In einer doppelblinden, Placebo-kontrollierten Studie wurde Glukagon intramuskul{\"a}r 13 Patienten mit T1DM (6 M{\"a}nner / 7 Frauen; [ BMI ] : 24,8 ± 0,95 kg / m2) , 11 {\"u}bergewichtigen Teilnehmern (OP ; 5/6 ; 34,4 ± 1,7 kg / m2) und 13 gesunden schlanken Teilnehmern (LP ; 6/7 ; 21,7 ± 0,6 kg / m2) administriert. Zw{\"o}lf {\"u}bergewichtige Teilnehmer (OP ; 6/6 ; 34,4 ± 1,7 kg / m2) und 13 gesunde schlanke Teilnehmer (LP ; 6/7 ; 21,7 ± 0,6 kg / m2) f{\"u}hrten Insulintoleranztests in einer weiteren doppelblinden, Plazebo- kontrollierten Studie durch. {\"A}nderungen des GH, gesamt-IGF-1, der IGF-bindenden Proteinen ( IGFBPs ) und der IGF-1-Bioaktivit{\"a}t wurden durch das zellbasierte KIRA-Verfahren gemessen. Außerdem wurde die Wechselwirkung zwischen den metabolischen Hormonen (Glucagon und Insulin) und GH-IGF-1-System auf der Transkriptionsebene mit prim{\"a}ren Maus-Hepatozyten untersucht. In dieser Arbeit verringerte Glukagon die IGF-1-Bioaktivit{\"a}t bei den Menschen unabh{\"a}ngig von k{\"o}rpereigenen Insulinspiegeln, h{\"o}chstwahrscheinlich durch Modulation des IGFBP-1 und -2. Die Glukagon-induzierte Reduktion der IGF-1-Bioaktivit{\"a}t stellt einen neuen Mechanismus der Wirkung von Glucagon auf die GH-Sekretion dar und kann als m{\"o}gliche Erkl{\"a}rung f{\"u}r die negativen Auswirkungen der proteinreichen Di{\"a}t im Zusammenhang auf das erh{\"o}hte kardiovaskul{\"a}re Risiko und die Mortalit{\"a}t vorgeschlagen werden. Zus{\"a}tzlich wurde die Insulin-induzierten Hypoglyk{\"a}mie eine Abnahme der IGF-1-Bioaktivit{\"a}t durch Hochregulierung von IGFBP-2 zugeordnet. Diese Ergebnisse k{\"o}nnen auf m{\"o}gliche und wenig erforschte Mechanismen zur Erl{\"a}uterung der starken Assoziation zwischen Hypoglyk{\"a}mie und erh{\"o}hter kardiovaskul{\"a}rer Mortalit{\"a}t bei diabetischen Patienten beziehen.},
  language  = {en}
}
@phdthesis{Nguyen2011,
  author    = {Nguyen, Hung Minh},
  title     = {Regulation of leaf growth and development by transcription factors in Arabidopsis thaliana},
  address   = {Potsdam},
  pages     = {152 S.},
  year      = {2011},
  language  = {en}
}
@phdthesis{Guecker2005,
  author    = {G{\"u}cker, Bj{\"o}rn},
  title     = {Regulation of nutrient retention in stream ecosystems},
  pages     = {106 S. : graph. Darst.},
  year      = {2005},
  language  = {en}
}
@phdthesis{Sklodowski2015,
  author    = {Sklodowski, Kamil},
  title     = {Regulation of plant potassium channels},
  school      = {Universit{\"a}t Potsdam},
  pages     = {115},
  year      = {2015},
  language  = {en}
}
@phdthesis{Sharma2011,
  author    = {Sharma, Tripti},
  title     = {Regulation of potassium channels in plants : biophysical mechanisms and physiological implacations},
  address   = {Potsdam},
  pages     = {104 S.},
  year      = {2011},
  language  = {en}
}
@phdthesis{Paepke2014,
  author    = {P{\"a}pke, Carola},
  title     = {Regulation of respiration during low oxygen availability},
  school      = {Universit{\"a}t Potsdam},
  pages     = {144},
  year      = {2014},
  language  = {en}
}
@phdthesis{RamirezAguilar2010,
  author    = {Ram{\´i}rez Aguilar, Santiago Javier},
  title     = {Regulation of respiration in plants : molecular mechanisms in metabolism and in the mitochondrial electron transport chain},
  address   = {Potsdam},
  pages     = {Getr. Z{\"a}hlung : graph. Darst.},
  year      = {2010},
  language  = {en}
}
@phdthesis{Li2023,
  author    = {Li, Xiaoping},
  title     = {Regulation of starch granule number and morphology in arabidopsis thaliana},
  school      = {Universit{\"a}t Potsdam},
  pages     = {116},
  year      = {2023},
  language  = {en}
}
@phdthesis{Weits2015,
  author    = {Weits, Daniel},
  title     = {Regulation of the molecular response to low oxygen in plants},
  school      = {Universit{\"a}t Potsdam},
  pages     = {113},
  year      = {2015},
  language  = {en}
}
@phdthesis{Seebeck2020,
  author    = {Seebeck, Nicole},
  title     = {Regulation of the organokines FGF21 and chemerin by diet},
  doi       = {10.25932/publishup-47114},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-471140},
  school      = {Universit{\"a}t Potsdam},
  pages     = {i, 132},
  year      = {2020},
  abstract  = {The hepatokine FGF21 and the adipokine chemerin have been implicated as metabolic regulators and mediators of inter-tissue crosstalk. While FGF21 is associated with beneficial metabolic effects and is currently being tested as an emerging therapeutic for obesity and diabetes, chemerin is linked to inflammation-mediated insulin resistance. However, dietary regulation of both organokines and their role in tissue interaction needs further investigation. The LEMBAS nutritional intervention study investigated the effects of two diets differing in their protein content in obese human subjects with non-alcoholic fatty liver disease (NAFLD). The study participants consumed hypocaloric diets containing either low (LP: 10 EN\%, n = 10) or high (HP: 30 EN\%, n = 9) dietary protein 3 weeks prior to bariatric surgery. Before and after the intervention the participants were anthropometrically assessed, blood samples were drawn, and hepatic fat content was determined by MRS. During bariatric surgery, paired subcutaneous and visceral adipose tissue biopsies as well as liver biopsies were collected. The aim of this thesis was to investigate circulating levels and tissue-specific regulation of (1) FGF21 and (2) chemerin in the LEMBAS cohort. The results were compared to data obtained in 92 metabolically healthy subjects with normal glucose tolerance and normal liver fat content. (1) Serum FGF21 concentrations were elevated in the obese subjects, and strongly associated with intrahepatic lipids (IHL). In accordance, FGF21 serum concentrations increased with severity of NAFLD as determined histologically in the liver biopsies. Though both diets were successful in reducing IHL, the effect was more pronounced in the HP group. FGF21 serum concentrations and mRNA expression were bi-directionally regulated by dietary protein, independent from metabolic improvements. In accordance, in the healthy study subjects, serum FGF21 concentrations dropped by more than 60\% in response to the HP diet. A short-term HP intervention confirmed the acute downregulation of FGF21 within 24 hours. Lastly, experiments in HepG2 cell cultures and primary murine hepatocytes identified nitrogen metabolites (NH4Cl and glutamine) to dose-dependently suppress FGF21 expression. (2) Circulating chemerin concentrations were considerably elevated in the obese versus lean study participants and differently associated with markers of obesity and NAFLD in the two cohorts. The adipokine decreased in response to the hypocaloric interventions while an unhealthy high-fat diet induced a rise in chemerin serum levels. In the lean subjects, mRNA expression of RARRES2, encoding chemerin, was strongly and positively correlated with expression of several cytokines, including MCP1, TNFα, and IL6, as well as markers of macrophage infiltration in the subcutaneous fat depot. However, RARRES2 was not associated with any cytokine assessed in the obese subjects and the data indicated an involvement of chemerin not only in the onset but also resolution of inflammation. Analyses of the tissue biopsies and experiments in human primary adipocytes point towards a role of chemerin in adipogenesis while discrepancies between the in vivo and in vitro data were detected. Taken together, the results of this thesis demonstrate that circulating FGF21 and chemerin levels are considerably elevated in obesity and responsive to dietary interventions. FGF21 was acutely and bi-directionally regulated by dietary protein in a hepatocyte-autonomous manner. Given that both, a lack in essential amino acids and excessive nitrogen intake, exert metabolic stress, FGF21 may serve as an endocrine signal for dietary protein balance. Lastly, the data revealed that chemerin is derailed in obesity and associated with obesity-related inflammation. However, future studies on chemerin should consider functional and regulatory differences between secreted and tissue-specific isoforms.},
  language  = {en}
}
@phdthesis{Vigeolas2004,
  author    = {Vigeolas, Helene},
  title     = {Regulation of triacylglycerol biosynthesis in developing seeds of Brassica napus L. and Arabidopsis thaliana (L.) Heyn},
  pages     = {108 S. : graph. Darst.},
  year      = {2004},
  language  = {en}
}
@phdthesis{Gajdanowicz2010,
  author    = {Gajdanowicz, Pawel},
  title     = {Regulation of voltage-gated plant potassium channels},
  address   = {Potsdam},
  pages     = {83 S., [18] Bl. : Ill., graph. Darst.},
  year      = {2010},
  language  = {en}
}
@phdthesis{Krishnamoorthy2015,
  author    = {Krishnamoorthy, Praveen},
  title     = {Regulatory roles of Ptdlns(4,5)P2 in trafficking of the cellulose synthase complex and identification of distinct plasma membrane localisation patterns of Arabidopsis PiP5-kinases},
  school      = {Universit{\"a}t Potsdam},
  pages     = {133},
  year      = {2015},
  language  = {en}
}
@phdthesis{Tinpun2019,
  author    = {Tinpun, Kittisak},
  title     = {Relative rank of infinite full transformation semigroups with restricted range},
  school      = {Universit{\"a}t Potsdam},
  year      = {2019},
  language  = {en}
}
@phdthesis{Kochlik2019,
  author    = {Kochlik, Bastian Max},
  title     = {Relevance of biomarkers for the diagnosis of the frailty syndrome},
  doi       = {10.25932/publishup-44118},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-441186},
  school      = {Universit{\"a}t Potsdam},
  pages     = {IV, 99},
  year      = {2019},
  abstract  = {Frailty and sarcopenia share some underlying characteristics like loss of muscle mass, low muscle strength, and low physical performance. Imaging parameters and functional examinations mainly assess frailty and sarcopenia criteria; however, these measures can have limitations in clinical settings. Therefore, finding suitable biomarkers that reflect a catabolic muscle state e.g. an elevated muscle protein turnover as suggested in frailty, are becoming more relevant concerning frailty diagnosis and risk assessment. 3-Methylhistidine (3-MH) and its ratios 3-MH-to-creatinine (3-MH/Crea) and 3 MH-to-estimated glomerular filtration rate (3-MH/eGFR) are under discussion as possible biomarkers for muscle protein turnover and might support the diagnosis of frailty. However, there is some skepticism about the reliability of 3-MH measures since confounders such as meat and fish intake might influence 3-MH plasma concentrations. Therefore, the influence of dietary habits and an intervention with white meat on plasma 3-MH was determined in young and healthy individuals. In another study, the cross-sectional associations of plasma 3-MH, 3-MH/Crea and 3-MH/eGFR with the frailty status (robust, pre-frail and frail) were investigated. Oxidative stress (OS) is a possible contributor to frailty development, and high OS levels as well as low micronutrient levels are associated with the frailty syndrome. However, data on simultaneous measures of OS biomarkers together with micronutrients are lacking in studies including frail, pre-frail and robust individuals. Therefore, cross-sectional associations of protein carbonyls (PrCarb), 3-nitrotyrosine (3-NT) and several micronutrients with the frailty status were determined. A validated UPLC-MS/MS (ultra-performance liquid chromatography tandem mass spectrometry) method for the simultaneous quantification of 3-MH and 1-MH (1 methylhistidine, as marker for meat and fish consumption) was presented and used for further analyses. Omnivores showed higher plasma 3-MH and 1-MH concentrations than vegetarians and a white meat intervention resulted in an increase in plasma 3-MH, 3 MH/Crea, 1-MH and 1-MH/Crea in omnivores. Elevated 3-MH and 3-MH/Crea levels declined significantly within 24 hours after this white meat intervention. Thus, 3-MH and 3-MH/Crea might be used as biomarker for muscle protein turnover when subjects did not consume meat 24 hours prior to blood samplings. Plasma 3-MH, 3-MH/Crea and 3-MH/eGFR were higher in frail individuals than in robust individuals. Additionally, these biomarkers were positively associated with frailty in linear regression models, and higher odds to be frail were found for every increase in 3 MH and 3-MH/eGFR quintile in multivariable logistic regression models adjusted for several confounders. This was the first study using 3-MH/eGFR and it is concluded that plasma 3-MH, 3-MH/Crea and 3-MH/eGFR might be used to identify frail individuals or individuals at higher risk to be frail, and that there might be threshold concentrations or ratios to support these diagnoses. Higher vitamin D3, lutein/zeaxanthin, γ-tocopherol, α-carotene, β-carotene, lycopene and β-cryptoxanthin concentrations and additionally lower PrCarb concentrations were found in robust compared to frail individuals in multivariate linear models. Frail subjects had higher odds to be in the lowest than in the highest tertile for vitamin D3 α-tocopherol, α-carotene, β-carotene, lycopene, lutein/zeaxanthin, and β cryptoxanthin, and had higher odds to be in the highest than in the lowest tertile for PrCarb than robust individuals in multivariate logistic regression models. Thus, a low micronutrient together with a high PrCarb status is associated with pre-frailty and frailty.},
  language  = {en}
}
@phdthesis{Deeken2022,
  author    = {Deeken, Friederike},
  title     = {Relevance of non-pharmacological interventions that modify environmental factors in order to prevent and treat mental disorders in older patients and their caregivers},
  school      = {Universit{\"a}t Potsdam},
  year      = {2022},
  abstract  = {We live in an aging society. The change in demographic structures poses a number of challenges, including an increase in age-associated diseases. Delirium, dementia, and depression are considered to be of particular interest in the field of aging and mental health. A common theory regarding healthy aging and mental health is that the highest satisfaction and best performance is achieved when a person's abilities match the demands of their environment. In this context, the person's environment includes both the physical and the social environment. Based on this assumption, this dissertation focuses on the investigation of non-pharmacological interventions that modify environmental factors in order to facilitate the prevention and treatment of mental disorders in older patients and their caregivers. The first part of this dissertation consists of two publications and deals with the prevention of postoperative delirium in elderly patients. The PAWEL study investigated the use of a multimodal, non-pharmacological intervention in the routine care of patients aged 70 years or older undergoing elective surgery. The intervention included an interdepartmental delirium prevention team, daily use of seven manualized "best practice" procedures, structured staff training on delirium, and the adaptation of the hospital environment to the patients' needs. The second part of the dissertation used a meta-analysis to investigate whether technology-based interventions are a suitable form of support for informal caregivers of people with dementia. Subgroup analyses were conducted to examine the effect of different types of technology on caregiver burden and depressive symptoms. The following main results were found: The PAWEL study showed that the use of a multimodal, non-pharmacological intervention resulted in a significantly lower incidence rate of postoperative delirium and reduced days with delirium in the intervention group compared to the control group. However, this difference could not be observed in the group of patients undergoing elective cardiac surgery. The results of the meta-analysis showed that technology-based interventions offer a promising alternative to traditional "face-to-face" services. Significant effect sizes could be found in relation to both the burden and the depressive symptoms of caregiving relatives. These results provide further important information on the significant impact of non-pharmacological interventions that modify environmental factors on mental health, and support the consideration of such interventions in the prevention and treatment of mental disorders in both older patients and their caregivers.},
  language  = {en}
}
@phdthesis{Sieg2018,
  author    = {Sieg, Tobias},
  title     = {Reliability of flood damage estimations across spatial scales},
  doi       = {10.25932/publishup-42616},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-426161},
  school      = {Universit{\"a}t Potsdam},
  pages     = {XIII, 115},
  year      = {2018},
  abstract  = {Extreme Naturereignisse sind ein integraler Bestandteil der Natur der Erde. Sie werden erst dann zu Gefahren f{\"u}r die Gesellschaft, wenn sie diesen Ereignissen ausgesetzt ist. Dann allerdings k{\"o}nnen Naturgefahren verheerende Folgen f{\"u}r die Gesellschaft haben. Besonders hydro-meteorologische Gefahren wie zum Beispiel Flusshochwasser, Starkregenereignisse, Winterst{\"u}rme, Orkane oder Tornados haben ein hohes Schadenspotential und treten rund um den Globus auf. Einhergehend mit einer immer w{\"a}rmer werdenden Welt, werden auch Extremwetterereignisse, welche potentiell Naturgefahren ausl{\"o}sen k{\"o}nnen, immer wahrscheinlicher. Allerdings tr{\"a}gt nicht nur eine sich ver{\"a}ndernde Umwelt zur Erh{\"o}hung des Risikos von Naturgefahren bei, sondern auch eine sich ver{\"a}ndernde Gesellschaft. Daher ist ein angemessenes Risikomanagement erforderlich um die Gesellschaft auf jeder r{\"a}umlichen Ebene an diese Ver{\"a}nderungen anzupassen. Ein essentieller Bestandteil dieses Managements ist die Absch{\"a}tzung der {\"o}konomischen Auswirkungen der Naturgefahren. Bisher allerdings fehlen verl{\"a}ssliche Methoden um die Auswirkungen von hydro-meteorologischen Gefahren abzusch{\"a}tzen. Ein Hauptbestandteil dieser Arbeit ist daher die Entwicklung und Anwendung einer neuen Methode, welche die Verl{\"a}sslichkeit der Schadenssch{\"a}tzung verbessert. Die Methode wurde beispielhaft zur Sch{\"a}tzung der {\"o}konomischen Auswirkungen eines Flusshochwassers auf einzelne Unternehmen bis hin zu den Auswirkungen auf das gesamte Wirtschaftssystem Deutschlands erfolgreich angewendet. Bestehende Methoden geben meist wenig Information {\"u}ber die Verl{\"a}sslichkeit ihrer Sch{\"a}tzungen. Da diese Informationen Entscheidungen zur Anpassung an das Risiko erleichtern, wird die Verl{\"a}sslichkeit der Schadenssch{\"a}tzungen mit der neuen Methode dargestellt. Die Verl{\"a}sslichkeit bezieht sich dabei nicht nur auf die Schadenssch{\"a}tzung selber, sondern auch auf die Annahmen, die {\"u}ber betroffene Geb{\"a}ude gemacht werden. Nach diesem Prinzip kann auch die Verl{\"a}sslichkeit von Annahmen {\"u}ber die Zukunft dargestellt werden, dies ist ein wesentlicher Aspekt f{\"u}r Prognosen. Die Darstellung der Verl{\"a}sslichkeit und die erfolgreiche Anwendung zeigt das Potential der Methode zur Verwendung von Analysen f{\"u}r gegenw{\"a}rtige und zuk{\"u}nftige hydro-meteorologische Gefahren.},
  language  = {en}
}
@phdthesis{LeGallMboro2020,
  author    = {LeGall, Yann and Mboro, Mnyaka Sururu},
  title     = {Remembering the dismembered},
  doi       = {10.25932/publishup-50850},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-508502},
  school      = {Universit{\"a}t Potsdam},
  pages     = {viii, 346},
  year      = {2020},
  abstract  = {This thesis - written in co-authorship with Tanzanian activist Mnyaka Sururu Mboro - examines different cases of repatriation of ancestral remains to African countries and communities through the prism of postcolonial memory studies. It follows the theft and displacement of prominent ancestors from East and Southern Africa (Sarah Baartman, Dawid Stuurman, Mtwa Mkwawa, Songea Mbano, King Hintsa and the victims of the Ovaherero and Nama genocides) and argues that efforts made for the repatriation of their remains have contributed to a transnational remembrance of colonial violence. Drawing from cultural studies theories such as "multidirectional memory", "rehumanisation" and "necropolitics", the thesis argues for a new conceptualisation or "re-membrance" in repatriation, through processes of reunion, empowerment, story-telling and belonging. Besides, the afterlives of the dead ancestors, who stand at the centre of political debates on justice and reparations, remind of their past struggles against colonial oppression. They are therefore "memento vita", fostering counter-discourses that recognize them as people and stories. This manuscript is accompanied by a "(web)site of memory" where some of the research findings are made available to a wider audience. This blog also hosts important sound material which appears in the thesis as interventions by external contributors. Through QR codes, both the written and the digital version are linked with each other to problematize the idea of a written monograph and bring a polyphonic perspective to those diverse, yet connected, histories.},
  language  = {en}
}
@phdthesis{Purinton2020,
  author    = {Purinton, Benjamin},
  title     = {Remote sensing applications to earth surface processes in the Eastern Central Andes},
  doi       = {10.25932/publishup-44592},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-445926},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xiii, 134},
  year      = {2020},
  abstract  = {Geomorphology seeks to characterize the forms, rates, and magnitudes of sediment and water transport that sculpt landscapes. This is generally referred to as earth surface processes, which incorporates the influence of biologic (e.g., vegetation), climatic (e.g., rainfall), and tectonic (e.g., mountain uplift) factors in dictating the transport of water and eroded material. In mountains, high relief and steep slopes combine with strong gradients in rainfall and vegetation to create dynamic expressions of earth surface processes. This same rugged topography presents challenges in data collection and process measurement, where traditional techniques involving detailed observations or physical sampling are difficult to apply at the scale of entire catchments. Herein lies the utility of remote sensing. Remote sensing is defined as any measurement that does not disturb the natural environment, typically via acquisition of images in the visible- to radio-wavelength range of the electromagnetic spectrum. Remote sensing is an especially attractive option for measuring earth surface processes, because large areal measurements can be acquired at much lower cost and effort than traditional methods. These measurements cover not only topographic form, but also climatic and environmental metrics, which are all intertwined in the study of earth surface processes. This dissertation uses remote sensing data ranging from handheld camera-based photo surveying to spaceborne satellite observations to measure the expressions, rates, and magnitudes of earth surface processes in high-mountain catchments of the Eastern Central Andes in Northwest Argentina. This work probes the limits and caveats of remote sensing data and techniques applied to geomorphic research questions, and presents important progress at this disciplinary intersection.},
  language  = {en}
}
@phdthesis{Nitze2017,
  author    = {Nitze, Ingmar},
  title     = {Remote sensing of rapid permafrost landscape dynamics},
  school      = {Universit{\"a}t Potsdam},
  pages     = {151},
  year      = {2017},
  language  = {en}
}
@phdthesis{Klein2022,
  author    = {Klein, Konstantin Paul},
  title     = {Remote Sensing of Suspended Sediment Dynamics in the Arctic Nearshore Zone},
  doi       = {10.25932/publishup-57603},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-576032},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xvi, 85, xvii},
  year      = {2022},
  abstract  = {The Arctic nearshore zone plays a key role in the carbon cycle. Organic-rich sediments get eroded off permafrost affected coastlines and can be directly transferred to the nearshore zone. Permafrost in the Arctic stores a high amount of organic matter and is vulnerable to thermo-erosion, which is expected to increase due to climate change. This will likely result in higher sediment loads in nearshore waters and has the potential to alter local ecosystems by limiting light transmission into the water column, thus limiting primary production to the top-most part of it, and increasing nutrient export from coastal erosion. Greater organic matter input could result in the release of greenhouse gases to the atmosphere. Climate change also acts upon the fluvial system, leading to greater discharge to the nearshore zone. It leads to decreasing sea-ice cover as well, which will both increase wave energy and lengthen the open-water season. Yet, knowledge on these processes and the resulting impact on the nearshore zone is scarce, because access to and instrument deployment in the nearshore zone is challenging. Remote sensing can alleviate these issues in providing rapid data delivery in otherwise non-accessible areas. However, the waters in the Arctic nearshore zone are optically complex, with multiple influencing factors, such as organic rich suspended sediments, colored dissolved organic matter (cDOM), and phytoplankton. The goal of this dissertation was to use remotely sensed imagery to monitor processes related to turbidity caused by suspended sediments in the Arctic nearshore zone. In-situ measurements of water-leaving reflectance and surface water turbidity were used to calibrate a semi-empirical algorithm which relates turbidity from satellite imagery. Based on this algorithm and ancillary ocean and climate variables, the mechanisms underpinning nearshore turbidity in the Arctic were identified at a resolution not achieved before. The calibration of the Arctic Nearshore Turbidity Algorithm (ANTA) was based on in-situ measurements from the coastal and inner-shelf waters around Herschel Island Qikiqtaruk (HIQ) in the western Canadian Arctic from the summer seasons 2018 and 2019. It performed better than existing algorithms, developed for global applications, in relating turbidity from remotely sensed imagery. These existing algorithms were lacking validation data from permafrost affected waters, and were thus not able to reflect the complexity of Arctic nearshore waters. The ANTA has a higher sensitivity towards the lowest turbidity values, which is an asset for identifying sediment pathways in the nearshore zone. Its transferability to areas beyond HIQ was successfully demonstrated using turbidity measurements matching satellite image recordings from Adventfjorden, Svalbard. The ANTA is a powerful tool that provides robust turbidity estimations in a variety of Arctic nearshore environments. Drivers of nearshore turbidity in the Arctic were analyzed by combining ANTA results from the summer season 2019 from HIQ with ocean and climate variables obtained from the weather station at HIQ, the ERA5 reanalysis database, and the Mackenzie River discharge. ERA5 reanalysis data were obtained as domain averages over the Canadian Beaufort Shelf. Nearshore turbidity was linearly correlated to wind speed, significant wave height and wave period. Interestingly, nearshore turbidity was only correlated to wind speed at the shelf, but not to the in-situ measurements from the weather station at HIQ. This shows that nearshore turbidity, albeit being of limited spatial extent, gets influenced by the weather conditions multiple kilometers away, rather than in its direct vicinity. The large influence of wave energy on nearshore turbidity indicates that freshly eroded material off the coast is a major contributor to the nearshore sediment load. This contrasts results from the temperate and tropical oceans, where tides and currents are the major drivers of nearshore turbidity. The Mackenzie River discharge was not identified as a driver of nearshore turbidity in 2019, however, the analysis of 30 years of Landsat archive imagery from 1986 to 2016 suggests a direct link between the prevailing wind direction, which heavily influences the Mackenzie River plume extent, and nearshore turbidity around HIQ. This discrepancy could be caused by the abnormal discharge behavior of the Mackenzie River in 2019. This dissertation has substantially advanced the understanding of suspended sediment processes in the Arctic nearshore zone and provided new monitoring tools for future studies. The presented results will help to understand the role of the Arctic nearshore zone in the carbon cycle under a changing climate.},
  language  = {en}
}
@phdthesis{Kirchhecker2014,
  author    = {Kirchhecker, Sarah},
  title     = {Renewable imidazolium zwitterions as platform molecules for the synthesis of ionic liquids and materials},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-77412},
  school      = {Universit{\"a}t Potsdam},
  pages     = {136},
  year      = {2014},
  abstract  = {Following the principles of green chemistry, a simple and efficient synthesis of functionalised imidazolium zwitterionic compounds from renewable resources was developed based on a modified one-pot Debus-Radziszewski reaction. The combination of different carbohydrate-derived 1,2-dicarbonyl compounds and amino acids is a simple way to modulate the properties and introduce different functionalities. A representative compound was assessed as an acid catalyst, and converted into acidic ionic liquids by reaction with several strong acids. The reactivity of the double carboxylic functionality was explored by esterification with long and short chain alcohols, as well as functionalised amines, which led to the straightforward formation of surfactant-like molecules or bifunctional esters and amides. One of these di-esters is currently being investigated for the synthesis of poly(ionic liquids). The functionalisation of cellulose with one of the bifunctional esters was investigated and preliminary tests employing it for the functionalisation of filter papers were carried out successfully. The imidazolium zwitterions were converted into ionic liquids via hydrothermal decarboxylation in flow, a benign and scalable technique. This method provides access to imidazolium ionic liquids via a simple and sustainable methodology, whilst completely avoiding contamination with halide salts. Different ionic liquids can be generated depending on the functionality contained in the ImZw precursor. Two alanine-derived ionic liquids were assessed for their physicochemical properties and applications as solvents for the dissolution of cellulose and the Heck coupling.},
  language  = {en}
}
@phdthesis{Alshyab2012,
  author    = {Alshyab, Nooh},
  title     = {Rent, rentiersim, and the challenge of economic reforms : the case of Jordan},
  publisher = {Shaker},
  address   = {Aachen},
  isbn      = {978-3-8440-1023-7},
  pages     = {223 S.},
  year      = {2012},
  language  = {en}
}
@phdthesis{Jain2022,
  author    = {Jain, Nitisha},
  title     = {Representation and curation of knowledge graphs with embeddings},
  doi       = {10.25932/publishup-61224},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-612240},
  school      = {Universit{\"a}t Potsdam},
  pages     = {ii, 104},
  year      = {2022},
  abstract  = {Knowledge graphs are structured repositories of knowledge that store facts about the general world or a particular domain in terms of entities and their relationships. Owing to the heterogeneity of use cases that are served by them, there arises a need for the automated construction of domain- specific knowledge graphs from texts. While there have been many research efforts towards open information extraction for automated knowledge graph construction, these techniques do not perform well in domain-specific settings. Furthermore, regardless of whether they are constructed automatically from specific texts or based on real-world facts that are constantly evolving, all knowledge graphs inherently suffer from incompleteness as well as errors in the information they hold. This thesis investigates the challenges encountered during knowledge graph construction and proposes techniques for their curation (a.k.a. refinement) including the correction of semantic ambiguities and the completion of missing facts. Firstly, we leverage existing approaches for the automatic construction of a knowledge graph in the art domain with open information extraction techniques and analyse their limitations. In particular, we focus on the challenging task of named entity recognition for artwork titles and show empirical evidence of performance improvement with our proposed solution for the generation of annotated training data. Towards the curation of existing knowledge graphs, we identify the issue of polysemous relations that represent different semantics based on the context. Having concrete semantics for relations is important for downstream appli- cations (e.g. question answering) that are supported by knowledge graphs. Therefore, we define the novel task of finding fine-grained relation semantics in knowledge graphs and propose FineGReS, a data-driven technique that discovers potential sub-relations with fine-grained meaning from existing pol- ysemous relations. We leverage knowledge representation learning methods that generate low-dimensional vectors (or embeddings) for knowledge graphs to capture their semantics and structure. The efficacy and utility of the proposed technique are demonstrated by comparing it with several baselines on the entity classification use case. Further, we explore the semantic representations in knowledge graph embed- ding models. In the past decade, these models have shown state-of-the-art results for the task of link prediction in the context of knowledge graph comple- tion. In view of the popularity and widespread application of the embedding techniques not only for link prediction but also for different semantic tasks, this thesis presents a critical analysis of the embeddings by quantitatively measuring their semantic capabilities. We investigate and discuss the reasons for the shortcomings of embeddings in terms of the characteristics of the underlying knowledge graph datasets and the training techniques used by popular models. Following up on this, we propose ReasonKGE, a novel method for generating semantically enriched knowledge graph embeddings by taking into account the semantics of the facts that are encapsulated by an ontology accompanying the knowledge graph. With a targeted, reasoning-based method for generating negative samples during the training of the models, ReasonKGE is able to not only enhance the link prediction performance, but also reduce the number of semantically inconsistent predictions made by the resultant embeddings, thus improving the quality of knowledge graphs.},
  language  = {en}
}
@phdthesis{Nguyen2019,
  author    = {Nguyen, Manh Duy Linh},
  title     = {Reproduction, development and reproductive isolation barriers of the mormyrid fish (genus Campylomormyrus, Teleostei)},
  doi       = {10.25932/publishup-43719},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-437197},
  school      = {Universit{\"a}t Potsdam},
  pages     = {121},
  year      = {2019},
  abstract  = {Weakly electric mormyrid fish comprise about 200 species. 15 species of the genus Campylomormyrus have been described. These are very diverse concerning the trunk-like snout and the shape and duration of the electric organ discharge (EOD) and the anatomy of the electric organ. In this dissertation data on the reproduction in captivity of four species and on the ontogeny of the EOD and the EO of three species are presented. Reproduction of the four species C. compressirostris, C. rhynchophorus, C. tshokwe and C. numenius: Cyclical reproduction was provoked by changing only water conductivity (C): decreasing C led to gonadal recrudescence, an increase induced gonad regression. Data on the reproduction and development of three species are presented (in C. numenius gonad development could only be achieved in males). Agonistic behavior in the C. tshokwe pair forced us to divide the breeding tank; therefore, only ovipositions occurred. However, injection of an artificial GnRH hormone allowed us to obtain ripe eggs and sperm and to perform successful artificial reproduction. All three species (C. compressirostris, C. rhynchophorus, C. tshokwe) are indeterminate fractional spawners. Spawnings/ovipositions occurred during the second half of the night; no parental care was observed; no special spawning substrates were necessary. C. compressirostris successfully spawned in breeding groups, C. rhynchophorus as pair. Spawning intervals ranged from 6 to 66 days in C. rhynchophorus, 10-75 days in C. tshokwe, and 18 days in C. compressirostris (calculated values). Fecundities (eggs per fractional spawning) ranged from 70 to 1570 eggs in C. rhynchophorus, 100-1192 in C. tshokwe, and 38-246 in C. compressirostris. All three species produce yolky, slightly sticky eggs. Egg diameter ranges from 2.3-3.0 mm. Hatching occurred on day 3, feeding started on day 11. Transition from larval to juvenile stage occurred at around 20 mm total length (TL). At this size C. rhynchophorus developed a higher body than the two other species and differences between the species in the melanin pigmentation of the unpaired fins occurred. Between 32 and 35 mm TL the upper and lower jaws developed. C. compressirostris and C. tamandua are similar in morphology and both produce short EODs of ca. 150-200 μs duration. Both species reproduce easily in captivity. We tried to obtain natural hybrids in two breeding groups, 1) four males of C. compressirostris and three females of C. tamandua and 2) six females of C. compressirostris and four males of C. tamandua. In both combinations several times oviposition occurred, however, we never found fertilized eggs. In subsequent experiments, not described here, we obtained hybrids between these two species by means of artificial reproduction. Ontogeny of the EOD and the EO: The Campylomormyrus species are very diverse both concerning the shape and the duration of their EODs. There are species with very short EODs, e.g. C. compressirostris duration, a species with an EOD length of about 4-8 ms duration (C. tshokwe) and species with very long EODs of about 25 ms duration (e.g. C. rhynchophorus). Due to the successful breeding of the three species in captivity, we were able to investigate in detail the ontogeny of the EOD. Larvae of the three species C. compressirostris, C. tshokwe and C. rhynchophorus first produce a biphasic larval EOD typical for these small larvae. The first activity of the adult electric organ in the caudal peduncle is a biphasic juvenile EOD. Juvenile C. compressirostris and C. tshokwe start out with a short biphasic EOD of about 160 - 200 μs duration at sizes between 25 mm (C. compressirostris) and 37 mm (C. tshokwe). Adult C. compressirostris show an EOD identical to that of the juvenile. In C. tshokwe, the juvenile EOD changes continuously during development both concerning duration, amplitude increase and shape. 18 cm long C. tshokwe still do not yet produce an EOD typical for the adult fish. Juveniles of C. rhynchophorus produce at 33 mm total length a juvenile biphasic EOD, however, of longer duration (about 640 μs) than the two species mentioned above. This juvenile EOD changes continuously both in form, amplitude increase and duration with growth until the adult EOD waveform appears at about 15 cm body length. In juveniles about seven cm long the triphasic feature of the EOD starts to develop due to the appearance of a second head positive phase. Specific EOD stages are produced in relation to size and not to age. Individual differences in the EOD both concerning shape and duration are very small. The basic anatomy of the electrocytes is very similar in all three species: the main stalk which receives the innervation, is located at the caudal face of the electrocyte. Membrane penetrations of the stalks do not occur. However, there are differences in the fine structure of the electrocytes in the three species. Papillae, proliferations of the membrane, which increase the surface area of the electrocyte and are thought to incrase the EOD-duration, are only found in C. tshokwe and C. rhynchophorus. In these two species in addition, holes develop in the electrocytes during ontogeny. This might also have an impact on EOD duration.},
  language  = {en}
}
@phdthesis{Izraylit2021,
  author    = {Izraylit, Victor},
  title     = {Reprogrammable and tunable actuation in multiblock copolymer blends},
  doi       = {10.25932/publishup-51843},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-518434},
  school      = {Universit{\"a}t Potsdam},
  pages     = {104},
  year      = {2021},
  abstract  = {Soft actuators have drawn significant attention due to their relevance for applications, such as artificial muscles in devices developed for medicine and robotics. Tuning their performance and expanding their functionality are frequently done by means of chemical modification. The introduction of structural elements rendering non-synthetic modification of the performance possible, as well as control over physical appearance and facilitating their recycling is a subject of a great interest in the field of smart materials. The primary aim of this thesis was to create a shape-memory polymeric actuator, where the capability for non-synthetic tuning of the actuation performance is combined with reprocessability. Physically cross-linked polymeric matrices provide a solid material platform, where the in situ processing methods can be employed for modification of the composition and morphology, resulting in the fine tuning of the related mechanical properties and shape-memory actuation capability. The morphological features, required for shape-memory polymeric actuators, namely two crystallisable domains and anchoring points for physical cross-links, were embedded into a multiblock copolymer with poly(ε-caprolactone) and poly(L-lactide) segments (PLLA-PCL). Here, the melting transition of PCL was bisected into the actuating and skeleton-forming units, while the cross-linking was introduced via PLA stereocomplexation in blends with oligomeric poly(D-lactide) (ODLA). PLLA segment number average length of 12-15 repeating units was experimentally defined to be capable of the PLA stereocomplexes formation, but not sufficient for the isotactic crystallisation. Multiblock structure and phase dilution broaden the PCL melting transition, facilitating its separation into two conditionally independent crystalline domains. Low molar mass of the PLA stereocomplex components and a multiblock structure enables processing and reprocessing of the PLLA-PCL / ODLA blends with common non-destructive techniques. The modularity of the PLLA-PCL structure and synthetic approach allows for independent tuning of the properties of its components. The designed material establishes a solid platform for non-synthetic tuning of thermomechanical and structural properties of thermoplastic elastomers. To evaluate the thermomechanical stability of the formed physical network, three criteria were appraised. As physical cross-links, PLA stereocomplexes have to be evenly distributed within the material matrix, their melting temperature shall not overlap with the thermal transitions of the PCL domains and they have to maintain the structural integrity within the strain ε ranges further applied in the shape-memory actuation experiments. Assigning PCL the function of the skeleton-forming and actuating units, and PLA stereocomplexes the role of physical netpoints, shape-memory actuation was realised in the PLLA-PCL / ODLA blends. Reversible strain of shape-memory actuation was found to be a function of PLA stereocomplex crystallinity, i.e. physical cross-linking density, with a maximum of 13.4 ± 1.5\% at PLA stereocomplex content of 3.1 ± 0.3 wt\%. In this way, shape-memory actuation can be tuned via adjusting the composition of the PLLA-PCL / ODLA blend. This makes the developed material a valuable asset in the production of cost-effective tunable soft polymeric actuators for the applications in medicine and soft robotics.},
  language  = {en}
}
@phdthesis{Wang2018,
  author    = {Wang, Li},
  title     = {Reprogrammable, magnetically controlled polymer actuators},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xxviii, 107},
  year      = {2018},
  abstract  = {Polymeric materials, which can perform reversible shape changes after programming, in response to a thermal or electrical stimulation, can serve as (soft) actuating components in devices like artificial muscles, photonics, robotics or sensors. Such polymeric actuators can be realized with hydrogels, liquid crystalline elastomers, electro-active polymers or shape-memory polymers by controlling with stumuli such as heat, light, electrostatic or magnetic field. If the application conditions do not allow the direct heating or electric stimulation of these smart devices, noncontact triggering will be required. Remotely controlled actuation have been reported for liquid crystalline elastomer composites or shape-memory polymer network composites, when a persistent external stress is applied during inductive heating in an alternating magnetic field. However such composites cannot meet the demands of applications requiring remotely controlled free-standing motions of the actuating components. The current thesis investigates, whether a reprogrammable remotely controlled soft actuator can be realized by magneto-sensitive multiphase shape-memory copolymer network composites containing magnetite nanoparticles as magneto-sensitive multivalent netpoints. A central hypothesis was that a magnetically controlled two-way (reversible bidirectional) shape-memory effect in such nanocomposites can be achieved without application of external stress (freestanding), when the required orientation of the crystallizable actuation domains (ADs) can be ensured by an internal skeleton like structure formed by a second crystallizable phase determing the samples´s geometry, while magneto-sensitive iron oxide nanoparticles covalently integrated in the ADs allow remote temperature control. The polymer matrix of these composites should exhibit a phase-segregated morphology mainly composed of cyrstallizable ADs, whereby a second set of higher melting crystallites can take a skeleton like, geometry determining function (geometry determining domains, GDs) after programming of the composite and in this way the orientation of the ADs is established and maintained during actuation. The working principle for the reversible bidirectional movements in the multiphase shape-memory polymer network composite is related to a melting-induced contraction (MIC) during inductive heating and the crystallization induced elongation (CIE) of the oriented ADs during cooling. Finally, the amount of multivalent magnetosensitive netpoints in such a material should be as low as possible to ensure an adequate overall elasticity of the nanocomposite and at the same time a complete melting of both ADs and GDs via inductive heating, which is mandatory for enabling reprogrammability. At first, surface decorated iron oxide nanoparticles were synthesized and investigated. The coprecipitation method was applied to synthesize magnetic nanoparticles (mNPs) based on magnetite with size of 12±3 nm and in a next step a ring-opening polymerization (ROP) was utilized for covalent surface modification of such mNPs with oligo(ϵ-caprolactone) (OCL) or oligo(ω-pentadecalactone) (OPDL) via the "grafting from" approach. A successful coating of mNPs with OCL and OPDL was confirmed by differential scanning calorimetry (DSC) experiments showing melting peaks at 52±1 °C for mNP-OCL and 89±1 °C for mNP-OPDL. It was further explored whether two-layered surface decorated mNPs, can be prepared via a second surface-initiated ROP of mNP-OCL or mNP-OPDL with ω-pentadecalactone or ϵ-caprolactone. The observation of two distinct melting transitions in DSC experiments as well as the increase in molecular weight of the detached coatings determined by GPC and 1H-NMR indicated a successful synthesis of the twolayered nanoparticles mNP-OCL-OPDL and mNP-OPDL-OCL. In contrast TEM micrographs revealed a reduction of the thickness of the polymeric coating on the nanoparticles after the second ROP, indicating that the applied synthesis and purification required further optimization. For evaluating the impact of the dispersion of mNPs within a polymer matrix on the resulting inductive heating capability of composites, plain mNPs as well as OCL coated magnetite nanoparticles (mNP-OCLs) were physically incorporated into crosslinked poly(ε-caprolactone) (PCL) networks. Inductive heating experiments were performed with both networks cPCL/mNP and cPCL/mNP-OCL in an alternating magnetic field (AMF) with a magnetic field strength of H = 30 kA·m-1. Here a bulk temperature of Tbulk = 74±2 °C was achieved for cPCL/mNP-OCL, which was almost 20 °C higher than the melting transition of the PCL-based polymer matrix. In contrast, the composite with plain mNPs could only reach a Tbulk of 48±2 °C, which is not sufficient for a complete melting of all PCL crystallites as required for actuation. The inductive heating capability of a multiphase copolymer nanocomposite network (designed as soft actuators) containing surface decorated mNPs as covalent netpoints was investigated. Such composite was synthesized from star-shaped OCL and OPDL precursors, as well as mNP-OCLs via reaction with HDI. The weight ratio of OPDL and OCL in the starting reaction mixture was 15/85 (wt\%/wt\%) and the amount of iron oxide in the nanocomposite was 4 wt\%. DSC experiments revealed two well separated melting and crystallization peaks confirming the required phase-segregated morphology in the nanocomposite NC-mNP-OCL. TEM images could illustrate a phase-segregated morphology of the polymer matrix on the microlevel with droplet shaped regions attributed to the OPDL domains dispersed in an OCL matrix. The TEM images could further demonstrate that the nanoparticulate netpoints in NC-mNP-OCL were almost homogeneously dispersed within the OCL domains. The tests of the inductive heating capability of the nanocomposites at a magnetic field strength of Hhigh = 11.2 kA·m-1 revealed a achievable plateau surface temperature of Tsurf = 57±1 °C for NC-mNP-OCL recorded by an infrared video camera. An effective heat generation constant (̅P) can be derived from a multi-scale model for the heat generation, which is proportional to the rate of heat generation per unit volume of the sample. NC-mNP-OCL with homogeneously dispersed mNP-OCLs exhibited a ̅P value of 1.04±0.01 K·s- 1 at Hhigh, while at Hreset = 30.0 kA·m-1 a Tsurf of 88±1 °C (where all OPDL related crystallite are molten) and a ̅P value of 1.93±0.02 K·s-1 was obtained indicating a high magnetic heating capability of the composite. The free-standing magnetically-controlled reversible shape-memory effect (mrSME) was explored with originally straight nanocomposite samples programmed by bending to an angle of 180°. By switching the magnetic field on and off the composite sample was allowed to repetitively heat to 60 °C and cool to the ambient temperature. A pronounced mrSME, characterized by changes in bending angle of Δϐrev = 20±3° could be obtained for a composite sample programmed by bending when a magnetic field strength of Hhigh = 11.2 kA·m-1 was applied in a multi-cyclic magnetic bending experiment with 600 heating-cooling cycles it could be shown that the actuation performance did not change with increasing number of test cycles, demonstrating the accuracy and reproducibility of this soft actuator. The degree of actuation as well as the kinetics of the shape changes during heating could be tuned by variation of the magnetic filed strength between Hlow and Hhigh or the magnetic field exposure time. When Hreset = 30.0 kA·m-1 was applied the programmed geometry was erased and the composite sample returned to it´s originally straight shape. The reprogrammability of the nanocomposite actuators was demonstrated by one and the same test specimen first exhibiting reversible angle changes when programmed by bending, secondly reprogrammed to a concertina, which expands upon inductive heating and contracts during cooling and finally reprogrammed to a clip like shape, which closes during cooling and opens when Hhigh was applied. In a next step the applicability of the presented remote controllable shape-memory polymer actuators was demonstrated by repetitive opening and closing of a multiring device prepared from NC-mNP-OCL, which repetitively opens and closes when a alternating magnetic field (Hhigh = 11.2 kA·m-1) was switched on and off. For investigation of the micro- and nanostructural changes related to the actuation of the developed nanocomposite, AFM and WAXS experiments were conducted with programmed nanocomposite samples under cyclic heating and cooling between 25 °C and 60 °C. In AFM experiments the change in the distance (D) between representative droplet-like structures related to the OPDL geometry determining domains was used to calculate the reversible change in D. Here Drev = 3.5±1\% was found for NC-mNP-OCL which was in good agreement with the results of the magneto-mechanical actuation experiments. Finally, the analysis of azimuthal (radial) WAXS scattering profiles could support the oriented crystallization of the OCL actuation domains at 25 °C. In conclusion, the results of this work successfully demonstrated that shape-memory polymer nanocomposites, containing mNPs as magneto-sensitive multifunctional netpoints in a covalently crosslinked multiphase polymer matrix, exhibit magnetically (remotely) controlled actuations upon repetitive exposure to an alternating magnetic field. Furthermore, the (shape) memory of such a nanocomposite can be erased by exposing it to temperatures above the melting temperature of the geometry forming domains, which allows a reprogramming of the actuator. These findings would be relevant for designing novel reprogrammable remotely controllable soft polymeric actuators.},
  language  = {en}
}
@phdthesis{Alnemr2011,
  author    = {Alnemr, Rehab},
  title     = {Reputation object representation model for enabling reputation interoperability},
  address   = {Potsdam},
  pages     = {179 S.},
  year      = {2011},
  language  = {en}
}