@article{AlbertGrasseinSchurretal.2011, author = {Albert, C{\´e}cile H. and Grassein, Fabrice and Schurr, Frank Martin and Vieilledent, Ghislain and Violle, Cyrille}, title = {When and how should intraspecific variability be considered in trait-based plant ecology?}, series = {Perspectives in plant ecology, evolution and systematics}, volume = {13}, journal = {Perspectives in plant ecology, evolution and systematics}, number = {3}, publisher = {Elsevier}, address = {Jena}, issn = {1433-8319}, doi = {10.1016/j.ppees.2011.04.003}, pages = {217 -- 225}, year = {2011}, abstract = {Trait-based studies have become extremely common in plant ecology. Trait-based approaches often rely on the tacit assumption that intraspecific trait variability (ITV) is negligible compared to interspecific variability, so that species can be characterized by mean trait values. Yet, numerous recent studies have challenged this assumption by showing that ITV significantly affects various ecological processes. Accounting for ITV may thus strengthen trait-based approaches, but measuring trait values on a large number of individuals per species and site is not feasible. Therefore, it is important and timely to synthesize existing knowledge on ITV in order to (1) decide critically when ITV should be considered, and (2) establish methods for incorporating this variability. Here we propose a practical set of rules to identify circumstances under which ITV should be accounted for. We formulate a spatial trait variance partitioning hypothesis to highlight the spatial scales at which ITV cannot be ignored in ecological studies. We then refine a set of four consecutive questions on the research question, the spatial scale, the sampling design, and the type of studied traits, to determine case-by-case if a given study should quantify ITV and test its effects. We review methods for quantifying ITV and develop a step-by-step guideline to design and interpret simulation studies that test for the importance of ITV. Even in the absence of quantitative knowledge on ITV, its effects can be assessed by varying trait values within species within realistic bounds around the known mean values. We finish with a discussion of future requirements to further incorporate ITV within trait-based approaches. This paper thus delineates a general framework to account for ITV and suggests a direction towards a more quantitative trait-based ecology.}, language = {en} } @article{Knobloch2011, author = {Knobloch, J{\"o}rn}, title = {Postdemocracy and postsocialism the convergence of two crises by using the example of Russia}, series = {{\"O}sterreichische Zeitschrift f{\"u}r Politikwissenschaft}, volume = {40}, journal = {{\"O}sterreichische Zeitschrift f{\"u}r Politikwissenschaft}, number = {2}, publisher = {Facultas.wuv}, address = {Wien}, issn = {1615-5548}, pages = {169 -- +}, year = {2011}, abstract = {The article compares the postdemocracy with the postsocialism. At first the paper analyzes the debate of the postdemocracy and points out an analytical model of postdemocracy. Afterwards the paper searches for symptoms of the postdemocracy within the case of Russia which appears as one possible ideal type of postsocialism. The comparison shows that both post-phenomenons are two sides of one global process of transformation. However, the case of postsocialism acts as a trendsetter. The postsocialist Russia sets an example for the possible developments of the postdemocracy.}, language = {de} } @article{WessigMatthesPick2011, author = {Wessig, Pablo and Matthes, Annika and Pick, Charlotte}, title = {The photo-dehydro-Diels-Alder (PDDA) reaction}, series = {Organic \& biomolecular chemistry : an international journal of synthetic, physical and biomolecular organic chemistry}, volume = {9}, journal = {Organic \& biomolecular chemistry : an international journal of synthetic, physical and biomolecular organic chemistry}, number = {22}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1477-0520}, doi = {10.1039/c1ob06066j}, pages = {7599 -- 7605}, year = {2011}, abstract = {The photo-dehydro-Diels-Alder (PDDA) reaction is a valuable extension of the classical Diels-Alder (DA) reaction. The PDDA reaction differs from the DA reaction by the replacement of one of the C-C-double bonds of the diene moiety by a C-C triple bond and by the photochemical triggering of the reaction. This entails that, in contrast to the DA reaction, the PDDA reaction proceeds according to a multistage mechanism with biradicals and cycloallenes as intermediates. The PDDA reaction provides access to a considerable variety of compound classes. For example, 1-phenylnaphthlenes, 1,1'-binaphthyls, N-heterocyclic biaryls, and naphthalenophanes could be obtained by this reaction.}, language = {en} } @article{SchmidtHoelter2011, author = {Schmidt, Bernd and H{\"o}lter, Frank}, title = {Suzuki-Miyaura cross coupling reactions with Phenoldiazonium salts}, series = {Organic \& biomolecular chemistry : an international journal of synthetic, physical and biomolecular organic chemistry}, volume = {9}, journal = {Organic \& biomolecular chemistry : an international journal of synthetic, physical and biomolecular organic chemistry}, number = {13}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1477-0520}, doi = {10.1039/c1ob05256j}, pages = {4914 -- 4920}, year = {2011}, abstract = {The Suzuki-Miyaura coupling of phenol diazonium salts and aryl trifluoroborates yields 4-hydroxybiaryls in a protecting group-free synthesis.}, language = {en} } @article{KleinpeterLaemmermannKuehn2011, author = {Kleinpeter, Erich and Laemmermann, Anica and K{\"u}hn, Heiner}, title = {The anisotropic effect of functional groups in H-1 NMR spectra is the molecular response property of spatial nucleus independent chemical shifts (NICS)-Conformational equilibria of exo/endo tetrahydrodicyclopentadiene derivatives}, series = {Organic \& biomolecular chemistry : an international journal of synthetic, physical and biomolecular organic chemistry}, volume = {9}, journal = {Organic \& biomolecular chemistry : an international journal of synthetic, physical and biomolecular organic chemistry}, number = {4}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1477-0520}, doi = {10.1039/c0ob00356e}, pages = {1098 -- 1111}, year = {2011}, abstract = {The inversion of the flexible five-membered ring in tetrahydrodicyclopentadiene (TH-DCPD) derivatives remains fast on the NMR timescale even at 103 K. Since the intramolecular exchange process could not be sufficiently slowed for spectroscopic evaluation, the conformational equilibrium is thus inaccessible by dynamic NMR. Fortunately, the spatial magnetic properties of the aryl and carbonyl groups attached to the DCPD skeleton can be employed in order to evaluate the conformational state of the system. In this context, the anisotropic effects of the functional groups in the H-1 NMR spectra prove to be the molecular response property of spatial nucleus independent chemical shifts (NICS).}, language = {en} } @article{BuchmannSchurrNathanetal.2011, author = {Buchmann, Carsten M. and Schurr, Frank Martin and Nathan, Ran and Jeltsch, Florian}, title = {An allometric model of home range formation explains the structuring of animal communities exploiting heterogeneous resources}, series = {Oikos}, volume = {120}, journal = {Oikos}, number = {1}, publisher = {Wiley-Blackwell}, address = {Malden}, issn = {0030-1299}, doi = {10.1111/j.1600-0706.2010.18556.x}, pages = {106 -- 118}, year = {2011}, abstract = {Understanding and predicting the composition and spatial structure of communities is a central challenge in ecology. An important structural property of animal communities is the distribution of individual home ranges. Home range formation is controlled by resource heterogeneity, the physiology and behaviour of individual animals, and their intra- and interspecific interactions. However, a quantitative mechanistic understanding of how home range formation influences community composition is still lacking. To explore the link between home range formation and community composition in heterogeneous landscapes we combine allometric relationships for physiological properties with an algorithm that selects optimal home ranges given locomotion costs, resource depletion and competition in a spatially-explicit individual-based modelling framework. From a spatial distribution of resources and an input distribution of animal body mass, our model predicts the size and location of individual home ranges as well as the individual size distribution (ISD) in an animal community. For a broad range of body mass input distributions, including empirical body mass distributions of North American and Australian mammals, our model predictions agree with independent data on the body mass scaling of home range size and individual abundance in terrestrial mammals. Model predictions are also robust against variation in habitat productivity and landscape heterogeneity. The combination of allometric relationships for locomotion costs and resource needs with resource competition in an optimal foraging framework enables us to scale from individual properties to the structure of animal communities in heterogeneous landscapes. The proposed spatially-explicit modelling concept not only allows for detailed investigation of landscape effects on animal communities, but also provides novel insights into the mechanisms by which resource competition in space shapes animal communities.}, language = {en} } @article{RochaVasseurHaynetal.2011, author = {Rocha, Marcia R. and Vasseur, David A. and Hayn, Michael and Holschneider, Matthias and Gaedke, Ursula}, title = {Variability patterns differ between standing stock and process rates}, series = {Oikos}, volume = {120}, journal = {Oikos}, number = {1}, publisher = {Wiley-Blackwell}, address = {Malden}, issn = {0030-1299}, doi = {10.1111/j.1600-0706.2010.18786.x}, pages = {17 -- 25}, year = {2011}, abstract = {Standing stocks are typically easier to measure than process rates such as production. Hence, stocks are often used as indicators of ecosystem functions although the latter are generally more strongly related to rates than to stocks. The regulation of stocks and rates and thus their variability over time may differ, as stocks constitute the net result of production and losses. Based on long-term high frequency measurements in a large, deep lake we explore the variability patterns in primary and bacterial production and relate them to those of the corresponding standing stocks, i.e. chlorophyll concentration, phytoplankton and bacterial biomass. We employ different methods (coefficient of variation, spline fitting and spectral analysis) which complement each other for assessing the variability present in the plankton data, at different temporal scales. In phytoplankton, we found that the overall variability of primary production is dominated by fluctuations at low frequencies, such as the annual, whereas in stocks and chlorophyll in particular, higher frequencies contribute substantially to the overall variance. This suggests that using standing stocks instead of rate measures leads to an under- or overestimation of food shortage for consumers during distinct periods of the year. The range of annual variation in bacterial production is 8 times greater than biomass, showing that the variability of bacterial activity (e.g. oxygen consumption, remineralisation) would be underestimated if biomass is used. The P/B ratios were variable and although clear trends are present in both bacteria and phytoplankton, no systematic relationship between stock and rate measures were found for the two groups. Hence, standing stock and process rate measures exhibit different variability patterns and care is needed when interpreting the mechanisms and implications of the variability encountered.}, language = {en} } @article{DongesDonnerRehfeldetal.2011, author = {Donges, Jonathan and Donner, Reik Volker and Rehfeld, Kira and Marwan, Norbert and Trauth, Martin H. and Kurths, J{\"u}rgen}, title = {Identification of dynamical transitions in marine palaeoclimate records by recurrence network analysis}, series = {Nonlinear processes in geophysics}, volume = {18}, journal = {Nonlinear processes in geophysics}, number = {5}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1023-5809}, doi = {10.5194/npg-18-545-2011}, pages = {545 -- 562}, year = {2011}, abstract = {The analysis of palaeoclimate time series is usually affected by severe methodological problems, resulting primarily from non-equidistant sampling and uncertain age models. As an alternative to existing methods of time series analysis, in this paper we argue that the statistical properties of recurrence networks - a recently developed approach - are promising candidates for characterising the system's nonlinear dynamics and quantifying structural changes in its reconstructed phase space as time evolves. In a first order approximation, the results of recurrence network analysis are invariant to changes in the age model and are not directly affected by non-equidistant sampling of the data. Specifically, we investigate the behaviour of recurrence network measures for both paradigmatic model systems with non-stationary parameters and four marine records of long-term palaeoclimate variations. We show that the obtained results are qualitatively robust under changes of the relevant parameters of our method, including detrending, size of the running window used for analysis, and embedding delay. We demonstrate that recurrence network analysis is able to detect relevant regime shifts in synthetic data as well as in problematic geoscientific time series. This suggests its application as a general exploratory tool of time series analysis complementing existing methods.}, language = {en} } @article{BenmehdiMakaravaBenhamidoucheetal.2011, author = {Benmehdi, Sabah and Makarava, Natallia and Benhamidouche, N. and Holschneider, Matthias}, title = {Bayesian estimation of the self-similarity exponent of the Nile River fluctuation}, series = {Nonlinear processes in geophysics}, volume = {18}, journal = {Nonlinear processes in geophysics}, number = {3}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1023-5809}, doi = {10.5194/npg-18-441-2011}, pages = {441 -- 446}, year = {2011}, abstract = {The aim of this paper is to estimate the Hurst parameter of Fractional Gaussian Noise (FGN) using Bayesian inference. We propose an estimation technique that takes into account the full correlation structure of this process. Instead of using the integrated time series and then applying an estimator for its Hurst exponent, we propose to use the noise signal directly. As an application we analyze the time series of the Nile River, where we find a posterior distribution which is compatible with previous findings. In addition, our technique provides natural error bars for the Hurst exponent.}, language = {en} } @misc{NikoloskivanDongen2011, author = {Nikoloski, Zoran and van Dongen, Joost T.}, title = {Modeling alternatives for interpreting the change in oxygen-consumption rates during hypoxic conditions}, series = {New phytologist : international journal of plant science}, volume = {190}, journal = {New phytologist : international journal of plant science}, number = {2}, publisher = {Wiley-Blackwell}, address = {Malden}, issn = {0028-646X}, doi = {10.1111/j.1469-8137.2011.03674.x}, pages = {273 -- 276}, year = {2011}, language = {en} } @article{ArvidssonPerezRodriguezMuellerRoeber2011, author = {Arvidsson, Samuel Janne and Perez-Rodriguez, Paulino and M{\"u}ller-R{\"o}ber, Bernd}, title = {A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects}, series = {New phytologist : international journal of plant science}, volume = {191}, journal = {New phytologist : international journal of plant science}, number = {3}, publisher = {Wiley-Blackwell}, address = {Malden}, issn = {0028-646X}, doi = {10.1111/j.1469-8137.2011.03756.x}, pages = {895 -- 907}, year = {2011}, abstract = {To gain a deeper understanding of the mechanisms behind biomass accumulation, it is important to study plant growth behavior. Manually phenotyping large sets of plants requires important human resources and expertise and is typically not feasible for detection of weak growth phenotypes. Here, we established an automated growth phenotyping pipeline for Arabidopsis thaliana to aid researchers in comparing growth behaviors of different genotypes. The analysis pipeline includes automated image analysis of two-dimensional digital plant images and evaluation of manually annotated information of growth stages. It employs linear mixed-effects models to quantify genotype effects on total rosette area and relative leaf growth rate (RLGR) and ANOVAs to quantify effects on developmental times. Using the system, a single researcher can phenotype up to 7000 plants d(-1). Technical variance is very low (typically < 2\%). We show quantitative results for the growth-impaired starch-excessmutant sex4-3 and the growth-enhancedmutant grf9. We show that recordings of environmental and developmental variables reduce noise levels in the phenotyping datasets significantly and that careful examination of predictor variables (such as d after sowing or germination) is crucial to avoid exaggerations of recorded phenotypes and thus biased conclusions.}, language = {en} } @misc{JohnsonLenhard2011, author = {Johnson, Kim L. and Lenhard, Michael}, title = {Genetic control of plant organ growth}, series = {New phytologist : international journal of plant science}, volume = {191}, journal = {New phytologist : international journal of plant science}, number = {2}, publisher = {Wiley-Blackwell}, address = {Malden}, issn = {0028-646X}, doi = {10.1111/j.1469-8137.2011.03737.x}, pages = {319 -- 333}, year = {2011}, abstract = {The growth of plant organs is under genetic control. Work in model species has identified a considerable number of genes that regulate different aspects of organ growth. This has led to an increasingly detailed knowledge about how the basic cellular processes underlying organ growth are controlled, and which factors determine when proliferation gives way to expansion, with this transition emerging as a critical decision point during primordium growth. Progress has been made in elucidating the genetic basis of allometric growth and the role of tissue polarity in shaping organs. We are also beginning to understand how the mechanisms that determine organ identity influence local growth behaviour to generate organs with characteristic sizes and shapes. Lastly, growth needs to be coordinated at several levels, for example between different cell layers and different regions within one organ, and the genetic basis for such coordination is being elucidated. However, despite these impressive advances, a number of basic questions are still not fully answered, for example, whether and how a growing primordium keeps track of its size. Answering these questions will likely depend on including additional approaches that are gaining in power and popularity, such as combined live imaging and modelling.}, language = {en} } @article{MoradiCarminatiVetterleinetal.2011, author = {Moradi, Ahmad B. and Carminati, Andrea and Vetterlein, Doris and Vontobel, Peter and Lehmann, Eberhard and Weller, Ulrich and Hopmans, Jan W. and Vogel, Hans-J{\"o}rg and Oswald, Sascha}, title = {Three-dimensional visualization and quantification of water content in the rhizosphere}, series = {New phytologist : international journal of plant science}, volume = {192}, journal = {New phytologist : international journal of plant science}, number = {3}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0028-646X}, doi = {10.1111/j.1469-8137.2011.03826.x}, pages = {653 -- 663}, year = {2011}, abstract = {Despite the importance of rhizosphere properties for water flow from soil to roots, there is limited quantitative information on the distribution of water in the rhizosphere of plants. Here, we used neutron tomography to quantify and visualize the water content in the rhizosphere of the plant species chickpea (Cicer arietinum), white lupin (Lupinus albus), and maize (Zea mays) 12 d after planting. We clearly observed increasing soil water contents (h) towards the root surface for all three plant species, as opposed to the usual assumption of decreasing water content. This was true for tap roots and lateral roots of both upper and lower parts of the root system. Furthermore, water gradients around the lower part of the roots were smaller and extended further into bulk soil compared with the upper part, where the gradients in water content were steeper. Incorporating the hydraulic conductivity and water retention parameters of the rhizosphere into our model, we could simulate the gradual changes of h towards the root surface, in agreement with the observations. The modelling result suggests that roots in their rhizosphere may modify the hydraulic properties of soil in a way that improves uptake under dry conditions.}, language = {en} } @article{LachmuthDurkaSchurr2011, author = {Lachmuth, Susanne and Durka, Walter and Schurr, Frank Martin}, title = {Differentiation of reproductive and competitive ability in the invaded range of Senecio inaequidens the role of genetic Allee effects, adaptive and nonadaptive evolution}, series = {New phytologist : international journal of plant science}, volume = {192}, journal = {New phytologist : international journal of plant science}, number = {2}, publisher = {Wiley-Blackwell}, address = {Malden}, issn = {0028-646X}, doi = {10.1111/j.1469-8137.2011.03808.x}, pages = {529 -- 541}, year = {2011}, abstract = {Genetic differentiation in the competitive and reproductive ability of invading populations can result from genetic Allee effects or r/K selection at the local or range-wide scale. However, the neutral relatedness of populations may either mask or falsely suggest adaptation and genetic Allee effects. In a common-garden experiment, we investigated the competitive and reproductive ability of invasive Senecio inaequidens populations that vary in neutral genetic diversity, population age and field vegetation cover. To account for population relatedness, we analysed the experimental results with 'animal models' adopted from quantitative genetics. Consistent with adaptive r/K differentiation at local scales, we found that genotypes from low-competition environments invest more in reproduction and are more sensitive to competition. By contrast, apparent effects of large-scale r/K differentiation and apparent genetic Allee effects can largely be explained by neutral population relatedness. Invading populations should not be treated as homogeneous groups, as they may adapt quickly to small-scale environmental variation in the invaded range. Furthermore, neutral population differentiation may strongly influence invasion dynamics and should be accounted for in analyses of common-garden experiments.}, language = {en} } @article{MantionGrafFloreaetal.2011, author = {Mantion, Alexandre and Graf, Philipp and Florea, Ileana and Haase, Andrea and Thuenemann, Andreas F. and Masic, Admir and Ersen, Ovidiu and Rabu, Pierre and Meier, Wolfgang P. and Luch, Andreas and Taubert, Andreas}, title = {Biomimetic synthesis of chiral erbium-doped silver/peptide/silica core-shell nanoparticles (ESPN)}, series = {Nanoscale}, volume = {3}, journal = {Nanoscale}, number = {12}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {2040-3364}, doi = {10.1039/c1nr10930h}, pages = {5168 -- 5179}, year = {2011}, abstract = {Peptide-modified silver nanoparticles have been coated with an erbium-doped silica layer using a method inspired by silica biomineralization. Electron microscopy and small-angle X-ray scattering confirm the presence of an Ag/peptide core and silica shell. The erbium is present as small Er(2)O(3) particles in and on the silica shell. Raman, IR, UV-Vis, and circular dichroism spectroscopies show that the peptide is still present after shell formation and the nanoparticles conserve a chiral plasmon resonance. Magnetic measurements find a paramagnetic behavior. In vitro tests using a macrophage cell line model show that the resulting multicomponent nanoparticles have a low toxicity for macrophages, even on partial dissolution of the silica shell.}, language = {en} } @article{StraubePikovskij2011, author = {Straube, Arthur V. and Pikovskij, Arkadij}, title = {Pattern formation induced by time-dependent advection}, series = {Mathematical modelling of natural phenomena}, volume = {6}, journal = {Mathematical modelling of natural phenomena}, number = {1}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {0973-5348}, doi = {10.1051/mmnp/20116107}, pages = {138 -- 148}, year = {2011}, abstract = {We study pattern-forming instabilities in reaction-advection-diffusion systems. We develop an approach based on Lyapunov-Bloch exponents to figure out the impact of a spatially periodic mixing flow on the stability of a spatially homogeneous state. We deal with the flows periodic in space that may have arbitrary time dependence. We propose a discrete in time model, where reaction, advection, and diffusion act as successive operators, and show that a mixing advection can lead to a pattern-forming instability in a two-component system where only one of the species is advected. Physically, this can be explained as crossing a threshold of Turing instability due to effective increase of one of the diffusion constants.}, language = {en} } @article{DouceSuisseGuillonetal.2011, author = {Douce, Laurent and Suisse, Jean-Moise and Guillon, Daniel and Taubert, Andreas}, title = {Imidazolium-based liquid crystals a modular platform for versatile new materials with finely tuneable properties and behaviour}, series = {Liquid crystals : an international journal of science and technology}, volume = {38}, journal = {Liquid crystals : an international journal of science and technology}, number = {11-12}, publisher = {Routledge, Taylor \& Francis Group}, address = {Abingdon}, issn = {0267-8292}, doi = {10.1080/02678292.2011.610474}, pages = {1653 -- 1661}, year = {2011}, abstract = {Ionic liquid Crystals constitute highly versatile materials that have drawn much interest these past few years in the fields of academic research and industrial development. In this respect, the present article is intended as an update of K. Binnemans review published in 2005, but focusing exclusively on the imidazolium cation - the most widely studied. Herein, imidazolium-containing thermotropic liquid crystalline materials will be sorted by molecular structure (mono-, bis-, poly-imidazolium compounds, with symmetrical and non-symmetrical structures) and discussed. Their physico-chemical properties will be exposed in order to adduce the relevancy and potential of the imidazolium platform in various fields of research.}, language = {en} } @article{BostonHaleVasishthetal.2011, author = {Boston, Marisa Ferrara and Hale, John T. and Vasishth, Shravan and Kliegl, Reinhold}, title = {Parallel processing and sentence comprehension difficulty}, series = {Language and cognitive processes}, volume = {26}, journal = {Language and cognitive processes}, number = {3}, publisher = {Wiley}, address = {Hove}, issn = {0169-0965}, doi = {10.1080/01690965.2010.492228}, pages = {301 -- 349}, year = {2011}, abstract = {Eye fixation durations during normal reading correlate with processing difficulty, but the specific cognitive mechanisms reflected in these measures are not well understood. This study finds support in German readers' eye fixations for two distinct difficulty metrics: surprisal, which reflects the change in probabilities across syntactic analyses as new words are integrated; and retrieval, which quantifies comprehension difficulty in terms of working memory constraints. We examine the predictions of both metrics using a family of dependency parsers indexed by an upper limit on the number of candidate syntactic analyses they retain at successive words. Surprisal models all fixation measures and regression probability. By contrast, retrieval does not model any measure in serial processing. As more candidate analyses are considered in parallel at each word, retrieval can account for the same measures as surprisal. This pattern suggests an important role for ranked parallelism in theories of sentence comprehension.}, language = {en} } @article{Schwarz2011, author = {Schwarz, Wolfgang}, title = {Compensating tendencies in penalty kick decisions of referees in professional football evidence from the German Bundesliga 1963-2006}, series = {Journal of sports sciences}, volume = {29}, journal = {Journal of sports sciences}, number = {5}, publisher = {Routledge, Taylor \& Francis Group}, address = {Abingdon}, issn = {0264-0414}, doi = {10.1080/02640414.2010.538711}, pages = {441 -- 447}, year = {2011}, abstract = {Using a large representative database (12,902 matches from the top professional football league in Germany), I show that the number (441) of two-penalty matches is larger than expected by chance, and that among these 441 matches there are considerably more matches in which each team is awarded one penalty than would be expected on the basis of independent penalty kick decisions (odds ratio=11.2, relative risk=6.34). Additional analyses based on the score in the match before a penalty is awarded and on the timing of penalties, suggest that awarding a first penalty to one team raises the referee's penalty evidence criterion for the same team, and lowers the corresponding criterion for the other team.}, language = {en} } @article{RolfsOhl2011, author = {Rolfs, Martin and Ohl, Sven}, title = {Visual suppression in the superior colliculus around the time of microsaccades}, series = {Journal of neurophysiology}, volume = {105}, journal = {Journal of neurophysiology}, number = {1}, publisher = {American Chemical Society}, address = {Bethesda}, issn = {0022-3077}, doi = {10.1152/jn.00862.2010}, pages = {1 -- 3}, year = {2011}, abstract = {Miniature eye movements jitter the retinal image unceasingly, raising the question of how perceptual continuity is achieved during visual fixation. Recent work discovered suppression of visual bursts in the superior colliculus around the time of microsaccades, tiny jerks of the eyes that support visual perception while gaze is fixed. This finding suggests that corollary discharge, supporting visual stability when rapid eye movements drastically shift the retinal image, may also exist for the smallest saccades.}, language = {en} } @article{MuellerUllmannSteinberg2011, author = {M{\"u}ller, Carsten and Ullmann, Kristina and Steinberg, Pablo}, title = {The grapevine-shoot extract Vineatrol30 Inhibits the chemically induced malignant transformation of BALB/c-3T3 Cells}, series = {Journal of medicinal food}, volume = {14}, journal = {Journal of medicinal food}, number = {1-2}, publisher = {Liebert}, address = {New Rochelle}, issn = {1096-620X}, doi = {10.1089/jmf.2010.0022}, pages = {34 -- 39}, year = {2011}, abstract = {Vineatrol (R) 30 (developed and produced jointly by Breko GmbH [Bremen, Germany] and Actichem [Montauban, France]) is a grapevine-shoot extract that contains resveratrol as well as considerable amounts of resveratrol oligomers. In the present study it is shown that Vineatrol30 at a noncytotoxic concentration of 2.3 mu g/mL significantly reduced the number of malignantly transformed foci induced by a sequential treatment of BALB/c-3T3 cells with 3-methylcholanthrene and 12-O-tetradecanoylphorbol 13-acetate in the so-called BALB/c-3T3 cell transformation assay. At a higher concentration Vineatrol30 drastically decreased the relative plating efficiency of the cells. Furthermore, the results suggest that the resveratrol oligomers present in Vineatrol30, independently from resveratrol itself, were indeed able to inhibit the formation of malignantly transformed BALB/c-3T3 foci.}, language = {en} } @article{XieWhiteWeberetal.2011, author = {Xie, Zai-Lai and White, Robin J. and Weber, Jens and Taubert, Andreas and Titirici, Magdalena M.}, title = {Hierarchical porous carbonaceous materials via ionothermal carbonization of carbohydrates}, series = {Journal of materials chemistry}, volume = {21}, journal = {Journal of materials chemistry}, number = {20}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {0959-9428}, doi = {10.1039/c1jm00013f}, pages = {7434 -- 7442}, year = {2011}, abstract = {We report on the ionothermal synthesis of porous carbon materials from a variety of carbohydrate precursors (i.e. D-glucose, D-fructose, D-xylose, and starch) using 1-butyl-3-methylimidazolium tetrachloroferrate(III), [Bmim][FeCl(4)] as a reusable solvent and catalyst. The carbon materials derived from these different carbohydrates are similar in terms of particle size and chemical composition, possessing relatively high surface areas from 44 to 155 m(2) g(-1) after ionothermal processing, which can be significantly increased to > 350 m(2) g(-1) by further thermal treatment (e. g. post-carbonization at 750 degrees C). CO(2) and N(2) sorption analysis, combined with Hg intrusion porosimetry, reveals a promising hierarchical pore structuring to these carbon materials. The ionic liquid [Bmim][FeCl(4)] has a triple role: it acts as both a soft template to generate the characterized pore structuring, solvent and as a catalyst resulting in enhanced ionothermal carbon yields. Importantly from a process point of view, the ionic liquid can be successfully recovered and reused. The current work shows that ionothermal synthesis has the potential to be an effective, low cost, and green reusable synthetic route towards sustainable porous carbon materials.}, language = {en} } @misc{BaeumerRossbachMischkeetal.2011, author = {B{\"a}umer, Wolfgang and Rossbach, Kristine and Mischke, Reinhard and Reines, Ilka and Langbein-Detsch, Ines and L{\"u}th, Anja and Kleuser, Burkhard}, title = {Decreased concentration and enhanced metabolism of sphingosine-1-Phosphate in lesional skin of dogs with atopic dermatitis disturbed Sphingosine-1-Phosphate homeostasis in atopic Dermatitis}, series = {The journal of investigative dermatology}, volume = {131}, journal = {The journal of investigative dermatology}, number = {1}, publisher = {Nature Publ. Group}, address = {New York}, issn = {0022-202X}, doi = {10.1038/jid.2010.252}, pages = {266 -- 268}, year = {2011}, language = {en} } @article{SchluneggerNortonZeilinger2011, author = {Schlunegger, Fritz and Norton, Kevin P. and Zeilinger, Gerold}, title = {Climatic forcing on channel profiles in the eastern cordillera of the Coroico Region, Bolivia}, series = {The journal of geology}, volume = {119}, journal = {The journal of geology}, number = {1}, publisher = {Univ. of Chicago Press}, address = {Chicago}, issn = {0022-1376}, doi = {10.1086/657407}, pages = {97 -- 107}, year = {2011}, abstract = {Orographic precipitation has a large impact on channel morphology and rock uplift via a positive feedback to erosion. We show that in the Eastern Cordillera of Bolivia, channel concavities reach their highest values where annual precipitation increases in the downstream direction, exceeding 3000 mm. The steepest channels are upstream of this zone of high concavity, where precipitation rates are <1000 mm yr(-1). Channels exhibit graded forms both upstream and downstream of this transient reach. We conclude that the prolonged effect of orographic erosion and related tectonic uplift is the preservation of channels with extreme concavities in the Eastern Cordillera.}, language = {en} } @article{PitzerJennenSteinmetzEsseretal.2011, author = {Pitzer, Martina and Jennen-Steinmetz, Christine and Esser, G{\"u}nter and Schmidt, Martin H. and Laucht, Manfred}, title = {Prediction of preadolescent depressive symptoms from child temperament, maternal distress, and gender results of a prospective, longitudinal study}, series = {Journal of developmental and behavioral pediatrics}, volume = {32}, journal = {Journal of developmental and behavioral pediatrics}, number = {1}, publisher = {Lippincott Williams \& Wilkins}, address = {Philadelphia}, issn = {0196-206X}, doi = {10.1097/DBP.0b013e3181f4a474}, pages = {18 -- 26}, year = {2011}, abstract = {Objective: The delineation of developmental pathways to juvenile depressive symptoms is of major clinical interest because these are known to be predictive for adult mood disorders and for a range of other mental health problems. This study investigates the impact of child temperament and early maternal distress, both of which are known to influence children's emotional development, on preadolescent depression. Methods: In a prospective, longitudinal at-risk sample (163 boys, 178 girls), we assessed temperament at the age of 3 months and at 2 years, 4.5 years, and 8 years, respectively, and chronic maternal distress during infancy. Hierarchical linear regression analysis was used to investigate the prediction of depressive symptoms at the age of 11 years measured by the Child Depression Inventory. In addition, we controlled for psychosocial and obstetric perinatal risks and gender. Results: Psychosocial risks and self-control temperament made significant independent contributions to preadolescent depression, whereas fearful, difficult temperament and obstetric risks were unrelated to depressive outcome. Interestingly, a clear gender difference emerged with a significant prediction from maternal distress only in girls. Conclusions: Our data extend previous findings of a concurrent association between regulative temperament and juvenile depression to a predictive view. Furthermore, the results point toward gender-specific pathways to preadolescent depression and support earlier findings indicating that subclinical maternal distress may exert as detrimental effects on child development as clinical depression.}, language = {en} } @article{CatchpolePlatzerWeikertetal.2011, author = {Catchpole, Gareth and Platzer, Alexander and Weikert, Cornelia and Kempkensteffen, Carsten and Johannsen, Manfred and Krause, Hans and Jung, Klaus and Miller, Kurt and Willmitzer, Lothar and Selbig, Joachim and Weikert, Steffen}, title = {Metabolic profiling reveals key metabolic features of renal cell carcinoma}, series = {Journal of cellular and molecular medicine : a journal of translational medicine}, volume = {15}, journal = {Journal of cellular and molecular medicine : a journal of translational medicine}, number = {1}, publisher = {Wiley-Blackwell}, address = {Malden}, issn = {1582-1838}, doi = {10.1111/j.1582-4934.2009.00939.x}, pages = {109 -- 118}, year = {2011}, abstract = {Recent evidence suggests that metabolic changes play a pivotal role in the biology of cancer and in particular renal cell carcinoma (RCC). Here, a global metabolite profiling approach was applied to characterize the metabolite pool of RCC and normal renal tissue. Advanced decision tree models were applied to characterize the metabolic signature of RCC and to explore features of metastasized tumours. The findings were validated in a second independent dataset. Vitamin E derivates and metabolites of glucose, fatty acid, and inositol phosphate metabolism determined the metabolic profile of RCC. alpha-tocopherol, hippuric acid, myoinositol, fructose-1-phosphate and glucose-1-phosphate contributed most to the tumour/normal discrimination and all showed pronounced concentration changes in RCC. The identified metabolic profile was characterized by a low recognition error of only 5\% for tumour versus normal samples. Data on metastasized tumours suggested a key role for metabolic pathways involving arachidonic acid, free fatty acids, proline, uracil and the tricarboxylic acid cycle. These results illustrate the potential of mass spectroscopy based metabolomics in conjunction with sophisticated data analysis methods to uncover the metabolic phenotype of cancer. Differentially regulated metabolites, such as vitamin E compounds, hippuric acid and myoinositol, provide leads for the characterization of novel pathways in RCC.}, language = {en} } @article{KrauseBuseMaternetal.2011, author = {Krause, Rolf Harald and Buse, Joern and Matern, Andrea and Schroeder, Boris and Haerdtle, Werner and Assmann, Thorsten}, title = {Eresus kollari (Araneae: Eresidae) calls for heathland management}, series = {The Journal of arachnology}, volume = {39}, journal = {The Journal of arachnology}, number = {3}, publisher = {American Arachnological Society}, address = {College Park}, issn = {0161-8202}, pages = {384 -- 392}, year = {2011}, abstract = {Northwest Europe's largest heather-dominated sandy habitats are located in the nature reserve Luneburger Heide, Germany. Yet, even these appear to be losing their ability to support some of their stenotopic species such as the ladybird spider, Eresus kollari Rossi 1846, and are thus becoming increasingly important for the preservation of these species. The habitat requirements of this endangered spider species were investigated in order to obtain data that will help stabilize the last remnants of the species' population in northwest Germany. Several heathland habitats were surveyed by pitfall trapping during the mate-search period of the males. Two statistical methods were applied: logistic regression and boosted regression trees (BRT). Both methods showed that three habitat variables are of prime relevance in predicting the occurrence of E. kollari: a) thickness of the organic layer (a negative effect), b) soil temperature at a depth of 10 cm, and c) Calluna cover in the herb layer (both have positive effect). Our results show that choppering (removing above-ground biomass and most of O-layer) and burning are likely appropriate heathland management measures for the conservation of E. kollari. Such measures improve the species' habitat quality by creating a heterogenic (small-scaled) heathland structure with suitable microhabitats. As Calluna heathlands show a clear senescence of the dominant heather, it is essential that those habitat patches be conserved. Further measures, such as transfer experiments, are recommended.}, language = {en} } @article{MuellerMayerBauretal.2011, author = {M{\"u}ller, Steffen and Mayer, Patrizia and Baur, Heiner and Mayer, Frank}, title = {Higher velocities in isokinetic dynamometry a pilot study of new test mode with active compensation of inertia}, series = {Isokinetics and exercise science : official journal of the European Isokinetic Society}, volume = {19}, journal = {Isokinetics and exercise science : official journal of the European Isokinetic Society}, number = {2}, publisher = {IOS Press}, address = {Amsterdam}, issn = {0959-3020}, doi = {10.3233/IES-2011-0398}, pages = {63 -- 70}, year = {2011}, abstract = {Isokinetic dynamometry is a standard technique for strength testing and training. Nevertheless reliability and validity is limited due to inertia effects, especially for high velocities. Therefore in a first methodological approach the purpose was to evaluate a new isokinetic measurement mode including inertia compensation compared to a classic isokinetic measurement mode for single and multijoint movements at different velocities. Isokinetic maximum strength measurements were carried out in 26 healthy active subjects. Tests were performed using classic isokinetic and new isokinetic mode in random order. Maximum torque/force, maximum movement velocity and time for acceleration were calculated. For inter-instrument agreement Bland and Altman analysis, systematic and random error was quantified. Differences between both methods were assessed (ANOVA alpha = 0.05). Bland and Altman analysis showed the highest agreement between the two modes for strength and velocity measurements (bias: < +/- 1.1\%; LOA: < 14.2\%) in knee flexion/extension at slow isokinetic velocity (60 degrees/s). Least agreement (range: bias: -67.6\% +/- 119.0\%; LOA: 53.4\% 69.3\%) was observed for shoulder/arm test at high isokinetic velocity (360 degrees/s). The Isokin(new) mode showed higher maximum movement velocities (p < 0.05). For low isokinetic velocities the new mode agrees with the classic mode. Especially at high isokinetic velocities the new isokinetic mode shows relevant benefits coupled with a possible trade-off with the force/torque measurement. In conclusion, this study offers for the first time a comparison between the 'classical' and inertia-compensated isokinetic dynamometers indicating the advantages and disadvantages associated with each individual approach, particularly as they relate to medium or high velocities in testing and training.}, language = {en} } @article{Gruene2011, author = {Gr{\"u}ne, Stefanie}, title = {Is there a Gap in Kant's B Deduction?}, series = {International journal of philosophical studies}, volume = {19}, journal = {International journal of philosophical studies}, number = {3}, publisher = {Routledge, Taylor \& Francis Group}, address = {Abingdon}, issn = {0967-2559}, doi = {10.1080/09672559.2011.595196}, pages = {465 -- 490}, year = {2011}, abstract = {In 'Beyond the Myth of the Myth: A Kantian Theory of Non-Conceptual Content', Robert Hanna argues for a very strong kind of non-conceptualism, and claims that this kind of non-conceptualism originally has been developed by Kant. But according to 'Kant's Non-Conceptualism, Rogue Objects and the Gap in the B Deduction', Kant's non-conceptualism poses a serious problem for his argument for the objective validity of the categories, namely the problem that there is a gap in the B Deduction. This gap is that the B Deduction goes through only if conceptualism is true, but Kant is a non-conceptualist. In this paper, I will argue, contrary to what Hanna claims, that there is not a gap in the B Deduction.}, language = {en} } @inproceedings{LauchtBlomeyerElFaddaghetal.2011, author = {Laucht, Manfred and Blomeyer, Dorothea and El-Faddagh, Mahha and Esser, G{\"u}nter and Schmidt, Martin and Banaschewski, Tobias and Becker, Katja}, title = {Are regulatory problems in infancy precursors of ADHD in childhood? a moderating role for the dopamine D4 receptor gene}, series = {Infant mental health journal}, volume = {32}, booktitle = {Infant mental health journal}, number = {3}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0163-9641}, pages = {212 -- 212}, year = {2011}, language = {en} } @article{RiveraVillarreyesBaroniOswald2011, author = {Rivera Villarreyes, C. A. and Baroni, Gabriele and Oswald, Sascha}, title = {Integral quantification of seasonal soil moisture changes in farmland by cosmic-ray neutrons}, series = {Hydrology and earth system sciences : HESS}, volume = {15}, journal = {Hydrology and earth system sciences : HESS}, number = {12}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1027-5606}, doi = {10.5194/hess-15-3843-2011}, pages = {3843 -- 3859}, year = {2011}, abstract = {Soil moisture at the plot or hill-slope scale is an important link between local vadose zone hydrology and catchment hydrology. However, so far only a few methods are on the way to close this gap between point measurements and remote sensing. One new measurement methodology that could determine integral soil moisture at this scale is the aboveground sensing of cosmic-ray neutrons, more precisely of ground albedo neutrons. The present study performed ground albedo neutron sensing (GANS) at an agricultural field in northern Germany. To test the method it was accompanied by other soil moisture measurements for a summer period with corn crops growing on the field and a later autumn-winter period without crops and a longer period of snow cover. Additionally, meteorological data and aboveground crop biomass were included in the evaluation. Hourly values of ground albedo neutron sensing showed a high statistical variability. Six-hourly values corresponded well with classical soil moisture measurements, after calibration based on one reference dry period and three wet periods of a few days each. Crop biomass seemed to influence the measurements only to minor degree, opposed to snow cover which has a more substantial impact on the measurements. The latter could be quantitatively related to a newly introduced field neutron ratio estimated from neutron counting rates of two energy ranges. Overall, our study outlines a procedure to apply the ground albedo neutron sensing method based on devices now commercially available, without the need for accompanying numerical simulations and suited for longer monitoring periods after initial calibration.}, language = {en} } @article{MunzOswaldSchmidt2011, author = {Munz, Matthias and Oswald, Sascha and Schmidt, C.}, title = {Sand box experiments to evaluate the influence of subsurface temperature probe design on temperature based water flux calculation}, series = {Hydrology and earth system sciences : HESS}, volume = {15}, journal = {Hydrology and earth system sciences : HESS}, number = {11}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1027-5606}, doi = {10.5194/hess-15-3495-2011}, pages = {3495 -- 3510}, year = {2011}, abstract = {Quantification of subsurface water fluxes based on the one dimensional solution to the heat transport equation depends on the accuracy of measured subsurface temperatures. The influence of temperature probe setup on the accuracy of vertical water flux calculation was systematically evaluated in this experimental study. Four temperature probe setups were installed into a sand box experiment to measure temporal highly resolved vertical temperature profiles under controlled water fluxes in the range of +/- 1.3 md(-1). Pass band filtering provided amplitude differences and phase shifts of the diurnal temperature signal varying with depth depending on water flux. Amplitude ratios of setups directly installed into the saturated sediment significantly varied with sand box hydraulic gradients. Amplitude ratios provided an accurate basis for the analytical calculation of water flow velocities, which matched measured flow velocities. Calculated flow velocities were sensitive to thermal properties of saturated sediment and to temperature sensor spacing, but insensitive to thermal dispersivity equal to solute dispersivity. Amplitude ratios of temperature probe setups indirectly installed into piezometer pipes were influenced by thermal exchange processes within the pipes and significantly varied with water flux direction only. Temperature time lags of small sensor distances of all setups were found to be insensitive to vertical water flux.}, language = {en} } @article{FaderGertenThammeretal.2011, author = {Fader, Marianelle and Gerten, Dieter and Thammer, M. and Heinke, J. and Lotze-Campen, Hermann and Lucht, Wolfgang and Cramer, Wolfgang}, title = {Internal and external green-blue agricultural water footprints of nations, and related water and land savings through trade}, series = {Hydrology and earth system sciences : HESS}, volume = {15}, journal = {Hydrology and earth system sciences : HESS}, number = {5}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1027-5606}, doi = {10.5194/hess-15-1641-2011}, pages = {1641 -- 1660}, year = {2011}, abstract = {The need to increase food production for a growing world population makes an assessment of global agricultural water productivities and virtual water flows important. Using the hydrology and agro-biosphere model LPJmL, we quantify at 0.5 degrees resolution the amount of blue and green water (irrigation and precipitation water) needed to produce one unit of crop yield, for 11 of the world's major crop types. Based on these, we also quantify the agricultural water footprints (WFP) of all countries, for the period 1998-2002, distinguishing internal and external WFP (virtual water imported from other countries) and their blue and green components, respectively. Moreover, we calculate water savings and losses, and for the first time also land savings and losses, through international trade with these products. The consistent separation of blue and green water flows and footprints shows that green water globally dominates both the internal and external WFP (84\% of the global WFP and 94\% of the external WFP rely on green water). While no country ranks among the top ten with respect to all water footprints calculated here, Pakistan and Iran demonstrate high absolute and per capita blue WFP, and the US and India demonstrate high absolute green and blue WFPs. The external WFPs are relatively small (6\% of the total global blue WFP, 16\% of the total global green WFP). Nevertheless, current trade of the products considered here saves significant water volumes and land areas (similar to 263 km(3) and similar to 41 Mha, respectively, equivalent to 5\% of the sowing area of the considered crops and 3.5\% of the annual precipitation on this area). Relating the proportions of external to internal blue/green WFP to the per capita WFPs allows recognizing that only a few countries consume more water from abroad than from their own territory and have at the same time above-average WFPs. Thus, countries with high per capita water consumption affect mainly the water availability in their own country. Finally, this study finds that flows/savings of both virtual water and virtual land need to be analysed together, since they are intrinsically related.}, language = {en} } @article{BallatoUbaLandgrafetal.2011, author = {Ballato, Paolo and Uba, Cornelius Eji and Landgraf, Angela and Strecker, Manfred and Sudo, Masafumi and Stockli, Daniel F. and Friedrich, Anke M. and Tabatabaei, Saeid H.}, title = {Arabia-Eurasia continental collision insights from late Tertiary foreland-basin evolution in the Alborz Mountains, northern Iran}, series = {Geological Society of America bulletin}, volume = {123}, journal = {Geological Society of America bulletin}, number = {1-2}, publisher = {American Institute of Physics}, address = {Boulder}, issn = {0016-7606}, doi = {10.1130/B30091.1}, pages = {106 -- 131}, year = {2011}, abstract = {A poorly understood lag time of 15-20 m.y. exists between the initial Arabia-Eurasia continental collision in late Eocene to early Oligocene time and the acceleration of tectonic and sedimentary processes across the collision zone in the early to late Miocene. The late Eocene to Miocene-Pliocene clastic and shallow-marine sedimentary rocks of the Kond, Eyvanekey, and Semnan Basins in the Alborz Mountains (northern Iran) offer the possibility to track the evolution of this orogen in the framework of collision processes. A transition from volcaniclastic submarine deposits to shallow-marine evaporites and terrestrial sediments occurred shortly after 36 Ma in association with reversals in sediment provenance, strata tilting, and erosional unroofing. These events followed the termination of subduction arc magmatism and marked a changeover from an extensional to a contractional regime in response to initiation of continental collision with the subduction of stretched Arabian lithosphere. This early stage of collision produced topographic relief associated with shallow foreland basins, suggesting that shortening and tectonic loading occurred at low rates. Starting from the early Miocene (17.5 Ma), flexural subsidence in response to foreland basin initiation occurred. Fast sediment accumulation rates and erosional unroofing trends point to acceleration of shortening by the early Miocene. We suggest that the lag time between the initiation of continental collision (36 Ma) and the acceleration of regional deformation (20-17.5 Ma) reflects a two-stage collision process, involving the "soft" collision of stretched lithosphere at first and "hard" collision following the arrival of unstretched Arabian continental litho sphere in the subduction zone.}, language = {en} } @article{LaiDentonGilesMuellerRoeberetal.2011, author = {Lai, Alvina G. and Denton-Giles, Matthew and M{\"u}ller-R{\"o}ber, Bernd and Schippers, Jos H. M. and Dijkwel, Paul P.}, title = {Positional information resolves structural variations and uncovers an evolutionarily divergent genetic locus in accessions of arabidopsis thaliana}, series = {Genome biology and evolution}, volume = {3}, journal = {Genome biology and evolution}, number = {1-2}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {1759-6653}, doi = {10.1093/gbe/evr038}, pages = {627 -- 640}, year = {2011}, abstract = {Genome sequencing of closely related individuals has yielded valuable insights that link genome evolution to phenotypic variations. However, advancement in sequencing technology has also led to an escalation in the number of poor quality-drafted genomes assembled based on reference genomes that can have highly divergent or haplotypic regions. The self-fertilizing nature of Arabidopsis thaliana poses an advantage to sequencing projects because its genome is mostly homozygous. To determine the accuracy of an Arabidopsis drafted genome in less conserved regions, we performed a resequencing experiment on a similar to 371-kb genomic interval in the Landsberg erecta (Ler-0) accession. We identified novel structural variations (SVs) between Ler-0 and the reference accession Col-0 using a long-range polymerase chain reaction approach to generate an Illumina data set that has positional information, that is, a data set with reads that map to a known location. Positional information is important for accurate genome assembly and the resolution of SVs particularly in highly duplicated or repetitive regions. Sixty-one regions with misassembly signatures were identified from the Ler-0 draft, suggesting the presence of novel SVs that are not represented in the draft sequence. Sixty of those were resolved by iterative mapping using our data set. Fifteen large indels (> 100 bp) identified from this study were found to be located either within protein-coding regions or upstream regulatory regions, suggesting the formation of novel alleles or altered regulation of existing genes in Ler-0. We propose future genome-sequencing experiments to follow a clone-based approach that incorporates positional information to ultimately reveal haplotype-specific differences between accessions.}, language = {en} } @article{WeidlichPolyvyanyyMendlingetal.2011, author = {Weidlich, Matthias and Polyvyanyy, Artem and Mendling, Jan and Weske, Mathias}, title = {Causal behavioural profiles - efficient computation, applications, and evaluation}, series = {Fundamenta informaticae}, volume = {113}, journal = {Fundamenta informaticae}, number = {3-4}, publisher = {IOS Press}, address = {Amsterdam}, issn = {0169-2968}, doi = {10.3233/FI-2011-614}, pages = {399 -- 435}, year = {2011}, abstract = {Analysis of behavioural consistency is an important aspect of software engineering. In process and service management, consistency verification of behavioural models has manifold applications. For instance, a business process model used as system specification and a corresponding workflow model used as implementation have to be consistent. Another example would be the analysis to what degree a process log of executed business operations is consistent with the corresponding normative process model. Typically, existing notions of behaviour equivalence, such as bisimulation and trace equivalence, are applied as consistency notions. Still, these notions are exponential in computation and yield a Boolean result. In many cases, however, a quantification of behavioural deviation is needed along with concepts to isolate the source of deviation. In this article, we propose causal behavioural profiles as the basis for a consistency notion. These profiles capture essential behavioural information, such as order, exclusiveness, and causality between pairs of activities of a process model. Consistency based on these profiles is weaker than trace equivalence, but can be computed efficiently for a broad class of models. In this article, we introduce techniques for the computation of causal behavioural profiles using structural decomposition techniques for sound free-choice workflow systems if unstructured net fragments are acyclic or can be traced back to S-or T-nets. We also elaborate on the findings of applying our technique to three industry model collections.}, language = {en} } @article{CiliaLandwehrPasserini2011, author = {Cilia, Elisa and Landwehr, Niels and Passerini, Andrea}, title = {Relational feature mining with hierarchical multitask kFOIL}, series = {Fundamenta informaticae}, volume = {113}, journal = {Fundamenta informaticae}, number = {2}, publisher = {IOS Press}, address = {Amsterdam}, issn = {0169-2968}, doi = {10.3233/FI-2011-604}, pages = {151 -- 177}, year = {2011}, abstract = {We introduce hierarchical kFOIL as a simple extension of the multitask kFOIL learning algorithm. The algorithm first learns a core logic representation common to all tasks, and then refines it by specialization on a per-task basis. The approach can be easily generalized to a deeper hierarchy of tasks. A task clustering algorithm is also proposed in order to automatically generate the task hierarchy. The approach is validated on problems of drug-resistance mutation prediction and protein structural classification. Experimental results show the advantage of the hierarchical version over both single and multi task alternatives and its potential usefulness in providing explanatory features for the domain. Task clustering allows to further improve performance when a deeper hierarchy is considered.}, language = {en} } @article{TelkemeyerRossiNierhausetal.2011, author = {Telkemeyer, Silke and Rossi, Sonja and Nierhaus, Till and Steinbrink, Jens and Obrig, Hellmuth and Wartenburger, Isabell}, title = {Acoustic processing of temporally modulated sounds in infants evidence from a combined near-infrared spectroscopy and EEG study}, series = {Frontiers in psychology}, volume = {2}, journal = {Frontiers in psychology}, number = {2}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2011.00062}, pages = {14}, year = {2011}, abstract = {Speech perception requires rapid extraction of the linguistic content from the acoustic signal. The ability to efficiently process rapid changes in auditory information is important for decoding speech and thereby crucial during language acquisition. Investigating functional networks of speech perception in infancy might elucidate neuronal ensembles supporting perceptual abilities that gate language acquisition. Interhemispheric specializations for language have been demonstrated in infants. How these asymmetries are shaped by basic temporal acoustic properties is under debate. We recently provided evidence that newborns process non-linguistic sounds sharing temporal features with language in a differential and lateralized fashion. The present study used the same material while measuring brain responses of 6 and 3 month old infants using simultaneous recordings of electroencephalography (EEG) and near-infrared spectroscopy (NIRS). NIRS reveals that the lateralization observed in newborns remains constant over the first months of life. While fast acoustic modulations elicit bilateral neuronal activations, slow modulations lead to right-lateralized responses. Additionally, auditory-evoked potentials and oscillatory EEG responses show differential responses for fast and slow modulations indicating a sensitivity for temporal acoustic variations. Oscillatory responses reveal an effect of development, that is, 6 but not 3 month old infants show stronger theta-band desynchronization for slowly modulated sounds. Whether this developmental effect is due to increasing fine-grained perception for spectrotemporal sounds in general remains speculative. Our findings support the notion that a more general specialization for acoustic properties can be considered the basis for lateralization of speech perception. The results show that concurrent assessment of vascular based imaging and electrophysiological responses have great potential in the research on language acquisition.}, language = {en} } @article{KlieglWeiDambacheretal.2011, author = {Kliegl, Reinhold and Wei, Ping and Dambacher, Michael and Yan, Ming and Zhou, Xiaolin}, title = {Experimental effects and individual differences in linear mixed models estimating the relationship between spatial, object, and attraction effects in visual attention}, series = {Frontiers in psychology}, volume = {2}, journal = {Frontiers in psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2010.00238}, pages = {12}, year = {2011}, abstract = {Linear mixed models (LMMs) provide a still underused methodological perspective on combining experimental and individual-differences research. Here we illustrate this approach with two-rectangle cueing in visual attention (Egly et al., 1994). We replicated previous experimental cue-validity effects relating to a spatial shift of attention within an object (spatial effect), to attention switch between objects (object effect), and to the attraction of attention toward the display centroid (attraction effect), also taking into account the design-inherent imbalance of valid and other trials. We simultaneously estimated variance/covariance components of subject-related random effects for these spatial, object, and attraction effects in addition to their mean reaction times (RTs). The spatial effect showed a strong positive correlation with mean RT and a strong negative correlation with the attraction effect. The analysis of individual differences suggests that slow subjects engage attention more strongly at the cued location than fast subjects. We compare this joint LMM analysis of experimental effects and associated subject-related variances and correlations with two frequently used alternative statistical procedures.}, language = {en} } @misc{FischerBrugger2011, author = {Fischer, Martin H. and Brugger, Peter}, title = {When digits help digits spatial-numerical associations point to finger counting as prime example of embodied cognition}, series = {Frontiers in psychology}, volume = {2}, journal = {Frontiers in psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2011.00260}, pages = {7}, year = {2011}, abstract = {Spatial numerical associations (SNAs) are prevalent yet their origin is poorly understood. We first consider the possible prime role of reading habits in shaping SNAs and list three observations that argue against a prominent influence of this role: (1) directional reading habits for numbers may conflict with those for non-numerical symbols, (2) short-term experimental manipulations can overrule the impact of decades of reading experience, (3) SNAs predate the acquisition of reading. As a promising alternative, we discuss behavioral, neuroscientific, and neuropsychological evidence in support of finger counting as the most likely initial determinant of SNAs. Implications of this "manumerical cognition" stance for the distinction between grounded, embodied, and situated cognition are discussed.}, language = {en} } @article{RyngajlloChildsLohseetal.2011, author = {Ryngajllo, Malgorzata and Childs, Liam H. and Lohse, Marc and Giorgi, Federico M. and Lude, Anja and Selbig, Joachim and Usadel, Bj{\"o}rn}, title = {SLocX predicting subcellular localization of Arabidopsis proteins leveraging gene expression data}, series = {Frontiers in plant science}, volume = {2}, journal = {Frontiers in plant science}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-462X}, doi = {10.3389/fpls.2011.00043}, pages = {19}, year = {2011}, abstract = {Despite the growing volume of experimentally validated knowledge about the subcellular localization of plant proteins, a well performing in silico prediction tool is still a necessity. Existing tools, which employ information derived from protein sequence alone, offer limited accuracy and/or rely on full sequence availability. We explored whether gene expression profiling data can be harnessed to enhance prediction performance. To achieve this, we trained several support vector machines to predict the subcellular localization of Arabidopsis thaliana proteins using sequence derived information, expression behavior, or a combination of these data and compared their predictive performance through a cross-validation test. We show that gene expression carries information about the subcellular localization not available in sequence information, yielding dramatic benefits for plastid localization prediction, and some notable improvements for other compartments such as the mito-chondrion, the Golgi, and the plasma membrane. Based on these results, we constructed a novel subcellular localization prediction engine, SLocX, combining gene expression profiling data with protein sequence-based information. We then validated the results of this engine using an independent test set of annotated proteins and a transient expression of GFP fusion proteins. Here, we present the prediction framework and a website of predicted localizations for Arabidopsis. The relatively good accuracy of our prediction engine, even in cases where only partial protein sequence is available (e.g., in sequences lacking the N-terminal region), offers a promising opportunity for similar application to non-sequenced or poorly annotated plant species. Although the prediction scope of our method is currently limited by the availability of expression information on the ATH1 array, we believe that the advances in measuring gene expression technology will make our method applicable for all Arabidopsis proteins.}, language = {en} } @article{RuprechtMutwilSaxeetal.2011, author = {Ruprecht, Colin and Mutwil, Marek and Saxe, Friederike and Eder, Michaela and Nikoloski, Zoran and Persson, Staffan}, title = {Large-scale co-expression approach to dissect secondary cell wall formation across plant species}, series = {Frontiers in plant science}, volume = {2}, journal = {Frontiers in plant science}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-462X}, doi = {10.3389/fpls.2011.00023}, pages = {13}, year = {2011}, abstract = {Plant cell walls are complex composites largely consisting of carbohydrate-based polymers, and are generally divided into primary and secondary walls based on content and characteristics. Cellulose microfibrils constitute a major component of both primary and secondary cell walls and are synthesized at the plasma membrane by cellulose synthase (CESA) complexes. Several studies in Arabidopsis have demonstrated the power of co-expression analyses to identify new genes associated with secondary wall cellulose biosynthesis. However, across-species comparative co-expression analyses remain largely unexplored. Here, we compared co-expressed gene vicinity networks of primary and secondary wall CESAsin Arabidopsis, barley, rice, poplar, soybean, Medicago, and wheat, and identified gene families that are consistently co-regulated with cellulose biosynthesis. In addition to the expected polysaccharide acting enzymes, we also found many gene families associated with cytoskeleton, signaling, transcriptional regulation, oxidation, and protein degradation. Based on these analyses, we selected and biochemically analyzed T-DNA insertion lines corresponding to approximately twenty genes from gene families that re-occur in the co-expressed gene vicinity networks of secondary wall CESAs across the seven species. We developed a statistical pipeline using principal component analysis and optimal clustering based on silhouette width to analyze sugar profiles. One of the mutants, corresponding to a pinoresinol reductase gene, displayed disturbed xylem morphology and held lower levels of lignin molecules. We propose that this type of large-scale co-expression approach, coupled with statistical analysis of the cell wall contents, will be useful to facilitate rapid knowledge transfer across plant species.}, language = {en} } @article{LappeKallmeyer2011, author = {Lappe, Michael and Kallmeyer, Jens}, title = {A cell extraction method for oily sediments}, series = {Frontiers in microbiology}, volume = {2}, journal = {Frontiers in microbiology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-302X}, doi = {10.3389/fmicb.2011.00233}, pages = {11}, year = {2011}, abstract = {Hydrocarbons can be found in many different habitats and represent an important carbon source for microbes. As fossil fuels, they are also an important economical resource and through natural seepage or accidental release they can be major pollutants. DNA-specific stains and molecular probes bind to hydrocarbons, causing massive background fluorescence, thereby hampering cell enumeration. The cell extraction procedure of Kallmeyer et al. (2008) separates the cells from the sediment matrix. In principle, this technique can also be used to separate cells from oily sediments, but it was not originally optimized for this application. Here we present a modified extraction method in which the hydrocarbons are removed prior to cell extraction. Due to the reduced background fluorescence the microscopic image becomes clearer, making cell identification, and enumeration much easier. Consequently, the resulting cell counts from oily samples treated according to our new protocol are significantly higher than those treated according to Kallmeyer et al. (2008). We tested different amounts of a variety of solvents for their ability to remove hydrocarbons and found that n-hexane and in samples containing more mature oils methanol, delivered the best results. However, as solvents also tend to lyse cells, it was important to find the optimum solvent to sample ratio, at which hydrocarbon extraction is maximized and cell lysis minimized. A volumetric ratio of 1:2-1:5 between a formalin-fixed sediment slurry and solvent delivered highest cell counts. Extraction efficiency was around 30-50\% and was checked on both oily samples spiked with known amounts of E. coli cells and oil-free samples amended with fresh and biodegraded oil. The method provided reproducible results on samples containing very different kinds of oils with regard to their degree of biodegradation. For strongly biodegraded oil MeOH turned out to be the most appropriate solvent, whereas for less biodegraded samples n-hexane delivered best results.}, language = {en} } @article{GrahnKurushimaBillingsetal.2011, author = {Grahn, R. A. and Kurushima, J. D. and Billings, N. C. and Grahn, J. C. and Halverson, J. L. and Hammer, E. and Ho, C. K. and Kun, T. J. and Levy, J. K. and Lipinski, M. J. and Mwenda, J. M. and Ozpinar, H. and Schuster, R. K. and Shoorijeh, S. J. and Tarditi, C. R. and Waly, N. E. and Wictum, E. J. and Lyons, L. A.}, title = {Feline non-repetitive mitochondrial DNA control region database for forensic evidence}, series = {Forensic science international : an international journal dedicated to the applications of genetics in the administration of justice ; Genetics}, volume = {5}, journal = {Forensic science international : an international journal dedicated to the applications of genetics in the administration of justice ; Genetics}, number = {1}, publisher = {Elsevier}, address = {Clare}, issn = {1872-4973}, doi = {10.1016/j.fsigen.2010.01.013}, pages = {33 -- 42}, year = {2011}, abstract = {The domestic cat is the one of the most popular pets throughout the world. A by-product of owning, interacting with, or being in a household with a cat is the transfer of shed fur to clothing or personal objects. As trace evidence, transferred cat fur is a relatively untapped resource for forensic scientists. Both phenotypic and genotypic characteristics can be obtained from cat fur, but databases for neither aspect exist. Because cats incessantly groom, cat fur may have nucleated cells, not only in the hair bulb, but also as epithelial cells on the hair shaft deposited during the grooming process, thereby generally providing material for DNA profiling. To effectively exploit cat hair as a resource, representative databases must be established. The current study evaluates 402 bp of the mtDNA control region (CR) from 1394 cats, including cats from 25 distinct worldwide populations and 26 breeds. Eighty-three percent of the cats are represented by 12 major mitotypes. An additional 8.0\% are clearly derived from the major mitotypes. Unique sequences are found in 7.5\% of the cats. The overall genetic diversity for this data set is 0.8813 +/- 0.0046 with a random match probability of 11.8\%. This region of the cat mtDNA has discriminatory power suitable for forensic application worldwide.}, language = {en} } @inproceedings{BigluBigluFalk2011, author = {Biglu, S. and Biglu, M. H. and Falk, C.}, title = {Scientometric study of scientific production n psyciatry}, series = {European psychiatry : the journal of the Association of European Psychiatrists}, volume = {26}, booktitle = {European psychiatry : the journal of the Association of European Psychiatrists}, number = {1}, publisher = {Elsevier}, address = {Paris}, issn = {0924-9338}, pages = {1}, year = {2011}, language = {en} } @article{BiermannMeierButteetal.2011, author = {Biermann, Ursula and Meier, Michael A. R. and Butte, Werner and Metzger, J{\"u}rgen O.}, title = {Cross-metathesis of unsaturated triglycerides with methyl acrylate synthesis of a dimeric metathesis product}, series = {European journal of lipid science and technology}, volume = {113}, journal = {European journal of lipid science and technology}, number = {1}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {1438-7697}, doi = {10.1002/ejlt.201000109}, pages = {39 -- 45}, year = {2011}, abstract = {Highly functionalized dimeric triglycerides, such as compound 2, are obtained as minor products besides branched macromolecules from the acyclic triene metathesis (ATMET) polymerization of unsaturated triglycerides such as glyceryl triundec-10-enoate 1 and methyl acrylate (MA) in the presence of the second generation Hoveyda-Grubbs catalyst. The formed amount of interesting products of lower molecular weight during the ATMET reaction depends on the ratio of MA and triglyceride, reaction time, and temperature. We isolated the dimeric metathesis product 2 and synthesized the respective partially hydrogenated dimer 3 regioselectivly in a seven step reaction sequence starting from 10-undecenoic acid 7 and glycerol. Product 3 was unambiguously characterized by (13)C and (1)H NMR and MS as well as the further intermediate products of the seven step reaction including 10,11 bromo-undecanoic acid 8, the respective brominated 1,3-diglyceride 9, the brominated 1,3-triglyceride 6, and the self-metathesis products 4 and 5 which were isolated and purified.}, language = {en} } @article{KreyeTothMeier2011, author = {Kreye, Oliver and Toth, Tommy and Meier, Michael A. R.}, title = {Poly-alpha,beta-unsaturated aldehydes derived from castor oil via ADMET polymerization}, series = {European journal of lipid science and technology}, volume = {113}, journal = {European journal of lipid science and technology}, number = {1}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {1438-7697}, doi = {10.1002/ejlt.201000108}, pages = {31 -- 38}, year = {2011}, abstract = {10-Undecenal, derived by pyrolysis and reduction from castor oil, was almost quantitatively transformed into the corresponding aldol condensation product under basic conditions. This alpha,omega-diene monomer was polymerized using acyclic diene metathesis (ADMET) polymerization. In a catalyst screening, four of nine different ruthenium-based metathesis catalysts showed good reactivity under neat conditions at 80 degrees C in the presence of 1,4-benzoquinone and polymers with molecular weights up to 11 kDa were formed. Furthermore, the (1)H NMR spectra showed that the metathesis catalysts tolerate the alpha,beta-unsaturated aldehyde function and due to the addition of benzoquinone, the degree of double bond isomerization was low. Further experiments investigating reduced catalyst amounts (down to 0.2 mol\%) and the temperature dependence of these ADMET polymerizations gave also satisfying results for the formation of poly-alpha,beta-unsaturated aldehydes. Moreover, ADMET polymerizations with different amounts of methyl 10-undecenoate as chain-stopper were performed and the integrals of the corresponding (1)H NMR spectra allowed the determination of an absolute degree of polymerization. Finally, a reduction of a poly-alpha,beta-unsaturated aldehyde with sodium borohydride was accomplished. The resulting poly-(allyl alcohol) could be a useful compound in the generation of polymer networks like polyesters, polyurethanes, and polycarbonates and thus be of high interest in materials research.}, language = {en} } @article{KraheTomaszewska2011, author = {Krah{\´e}, Barbara and Tomaszewska, Paulina}, title = {Sexual scripts and the acceptance of sexual aggression in Polish adolescents}, series = {European journal of developmental psychology}, volume = {8}, journal = {European journal of developmental psychology}, number = {6}, publisher = {Wiley}, address = {Hove}, issn = {1740-5629}, doi = {10.1080/17405629.2011.611034}, pages = {697 -- 712}, year = {2011}, abstract = {A study with 199 Polish adolescents explored the prominence of risk factors of sexual aggression as part of the sexual scripts for consensual sexual encounters and as predictors of the acceptance of sexual aggression. Distinguishing between general scripts, attributed to the age group as a whole, and individual scripts, reflecting personal standards, sexual scripts were linked to the normative endorsement of the risk factors and to the acceptance of sexual aggression. Individual scripts contained fewer risk factors of sexual aggression than general scripts. The more prominently the risk elements featured in the individual (but not in the general) scripts, the more they were seen as acceptable. For boys, risk scores in individual scripts were correlated with sexual behaviour and linked to the acceptance of sexual aggression via their normative endorsement. The distinction between individual and general scripts as guidelines for behaviour is discussed in terms of its significance for the understanding of sexual aggression.}, language = {en} } @article{Ette2011, author = {Ette, Ottmar}, title = {The Alexander von Humboldt date perspectives of a pioneer for the 21st Century}, series = {{\´E}tudes germaniques : revue trimestrielle de la Soci{\´e}t{\´e} des {\´E}tudes Germaniques}, volume = {66}, journal = {{\´E}tudes germaniques : revue trimestrielle de la Soci{\´e}t{\´e} des {\´E}tudes Germaniques}, number = {1}, publisher = {Didier Erudition}, address = {Paris}, issn = {0014-2115}, pages = {123 -- 138}, year = {2011}, language = {de} } @article{MischkeZhang2011, author = {Mischke, Steffen and Zhang, Chengjun}, title = {Ostracod distribution in Ulungur Lake (Xinjiang, China) and a reassessed Holocene record}, series = {Ecological research}, volume = {26}, journal = {Ecological research}, number = {1}, publisher = {Springer}, address = {Tokyo}, issn = {0912-3814}, doi = {10.1007/s11284-010-0768-1}, pages = {133 -- 145}, year = {2011}, abstract = {Ostracod shells in surface sediments from Ulungur Lake (Xinjiang, China) belong mainly to Limnocythere inopinata as the dominant species, and Candona neglecta and Darwinula stevensoni as accompanying, less abundant taxa. Shells of an additional nine species were recorded only sporadically. The three most abundant ostracods have wide tolerance ranges in terms of salinity, substrate and water depth. The similarly recorded bivalve Pisidium subtruncatum, and the gastropods Gyraulus chinensis and Radix auricularia belong to the most tolerant representatives of the genera. The bivalve and gastropods, in addition to the ostracod assemblage, reflect the fact that Ulungur Lake has experienced strong lake level and salinity variations due to water withdrawal in the catchment and the counteracting diversion of river waters to the lake in recent decades. The substrate in Ulungur Lake is typically fine-grained, apart from the delta region of the Ulungur River channel, which is marked by relatively coarse-grained detrital sediments barren of ostracod shells. This channel was created 40 years ago to divert water to Ulungur Lake and support its local fisheries and recreational facilities. A reassessed Holocene ostracod record from the lake shows that a significantly higher salinity and lower lake level existed in the early Holocene before 6.0 ka in response to the regional climate. In contrast, a higher lake level and lowest salinity is inferred for the late Holocene period between ca. 3.6 and 1.3 ka before present. Afterwards, the lake level declined and salinity increased in response to regional moisture reduction, although conditions similar to the early Holocene lake status were not re-established. Our surface-sediment-derived data provide a baseline for analysis of future environmental variations due to global climate change and regional water management.}, language = {en} }