@misc{SpikesRodriguezSilvaBennettetal.2021, author = {Spikes, Montrai and Rodr{\´i}guez-Silva, Rodet and Bennett, Kerri-Ann and Br{\"a}ger, Stefan and Josaphat, James and Torres-Pineda, Patricia and Ernst, Anja and Havenstein, Katja and Schlupp, Ingo and Tiedemann, Ralph}, title = {A phylogeny of the genus Limia (Teleostei: Poeciliidae) suggests a single-lake radiation nested in a Caribbean-wide allopatric speciation scenario}, series = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Zweitver{\"o}ffentlichungen der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {1866-8372}, doi = {10.25932/publishup-54888}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-548882}, pages = {1 -- 8}, year = {2021}, abstract = {Objective The Caribbean is an important global biodiversity hotspot. Adaptive radiations there lead to many speciation events within a limited period and hence are particularly prominent biodiversity generators. A prime example are freshwater fish of the genus Limia, endemic to the Greater Antilles. Within Hispaniola, nine species have been described from a single isolated site, Lake Mirago{\^a}ne, pointing towards extraordinary sympatric speciation. This study examines the evolutionary history of the Limia species in Lake Mirago{\^a}ne, relative to their congeners throughout the Caribbean. Results For 12 Limia species, we obtained almost complete sequences of the mitochondrial cytochrome b gene, a well-established marker for lower-level taxonomic relationships. We included sequences of six further Limia species from GenBank (total N  = 18 species). Our phylogenies are in concordance with other published phylogenies of Limia. There is strong support that the species found in Lake Mirago{\^a}ne in Haiti are monophyletic, confirming a recent local radiation. Within Lake Mirago{\^a}ne, speciation is likely extremely recent, leading to incomplete lineage sorting in the mtDNA. Future studies using multiple unlinked genetic markers are needed to disentangle the relationships within the Lake Mirago{\^a}ne clade.}, language = {en} } @article{SpikesRodriguezSilvaBennettetal.2021, author = {Spikes, Montrai and Rodr{\´i}guez-Silva, Rodet and Bennett, Kerri-Ann and Br{\"a}ger, Stefan and Josaphat, James and Torres-Pineda, Patricia and Ernst, Anja and Havenstein, Katja and Schlupp, Ingo and Tiedemann, Ralph}, title = {A phylogeny of the genus Limia (Teleostei: Poeciliidae) suggests a single-lake radiation nested in a Caribbean-wide allopatric speciation scenario}, series = {BMC Research Notes}, volume = {14}, journal = {BMC Research Notes}, publisher = {BMC Research Notes / Biomed Central}, address = {London}, issn = {1756-0500}, doi = {10.1186/s13104-021-05843-x}, pages = {1 -- 8}, year = {2021}, abstract = {Objective The Caribbean is an important global biodiversity hotspot. Adaptive radiations there lead to many speciation events within a limited period and hence are particularly prominent biodiversity generators. A prime example are freshwater fish of the genus Limia, endemic to the Greater Antilles. Within Hispaniola, nine species have been described from a single isolated site, Lake Mirago{\^a}ne, pointing towards extraordinary sympatric speciation. This study examines the evolutionary history of the Limia species in Lake Mirago{\^a}ne, relative to their congeners throughout the Caribbean. Results For 12 Limia species, we obtained almost complete sequences of the mitochondrial cytochrome b gene, a well-established marker for lower-level taxonomic relationships. We included sequences of six further Limia species from GenBank (total N  = 18 species). Our phylogenies are in concordance with other published phylogenies of Limia. There is strong support that the species found in Lake Mirago{\^a}ne in Haiti are monophyletic, confirming a recent local radiation. Within Lake Mirago{\^a}ne, speciation is likely extremely recent, leading to incomplete lineage sorting in the mtDNA. Future studies using multiple unlinked genetic markers are needed to disentangle the relationships within the Lake Mirago{\^a}ne clade.}, language = {en} } @article{VeloAntonBoratyńskiFerreiraetal.2019, author = {Velo-Ant{\´o}n, Guillermo and Boratyński, Zbyszek and Ferreira, Clara Mendes and Lima, Vanessa O. and Alves, Paulo C. and Brito, Jos{\´e} C.}, title = {Intraspecific genetic diversity and distribution of North African hedgehogs (Mammalia: Erinaceidae)}, series = {Biological journal of the Linnean Society : a journal of evolution}, volume = {127}, journal = {Biological journal of the Linnean Society : a journal of evolution}, number = {1}, publisher = {Oxford University Press}, address = {Oxford}, issn = {0024-4066}, doi = {10.1093/biolinnean/blz030}, pages = {156 -- 163}, year = {2019}, abstract = {Despite growing efforts to halt biodiversity loss, knowledge of species diversity and distribution is highly geographically biased, leaving some areas unexplored. Taxa distributed in remote, desert areas, such as hedgehogs (Mammalia; Eulipotyphla) in North Africa, are good examples of current knowledge gaps in systematics and biogeography. Here we studied the geographical distribution and intraspecific genetic diversity of hedgehogs in North Africa. Specimens belonging to North African and Eurasian species were analysed with mitochondrial (control region, CR) and nuclear (recombination activating gene 1, RAG1) gene fragments. This revealed a broader geographical distribution of Atelerix algirus in south-western Libya and of Paraechinus aethiopicus along the Atlantic Sahara. High intraspecific genetic differentiation was found in A. algirus and A. albiventris at the mitochondrial level, with nuclear haplotype sharing across their ranges. These findings suggest that biogeographical patterns of hedgehogs in North Africa are more complex than previously suggested, highlighting a need for further investigation in this remote and poorly known area.}, language = {en} } @article{MartinHerppichRoscheretal.2019, author = {Martin, Craig E. and Herppich, Werner B. and Roscher, Yvonne and Burkart, Michael}, title = {Relationships between leaf succulence and Crassulacean acid metabolism in the genus Sansevieria (Asparagaceae)}, series = {Flora : morphology, distribution, functional ecology of plants}, volume = {261}, journal = {Flora : morphology, distribution, functional ecology of plants}, publisher = {Elsevier}, address = {M{\"u}nchen}, issn = {0367-2530}, doi = {10.1016/j.flora.2019.151489}, pages = {8}, year = {2019}, abstract = {Relationships between different measures of succulence and Crassulacean acid metabolism (CAM; defined here as nocturnal increases in tissue acidity) were investigated in leaves of ten species of Sansevieria under greenhouse conditions. CAM was found in seven of the ten species investigated, and CAM correlated negatively with leaf thickness and leaf hydrenchyma/chlorenchyma ratio. Similarly, CAM correlated negatively with leaf water content, but only when expressed on a fresh mass basis. CAM was not correlated with "mesophyll succulence", but weakly with leaf chlorophyll concentration. These results indicate that CAM is associated more with "all-cell succulence" and not with the amount of leaf hydrenchyma in the genus Sansevieria. The findings of this study emphasize the importance of defining the nature of "leaf succulence" in studies of photosynthetic pathways and leaf morphology. Evidence is also provided that CAM and succulence arose multiple times in the genus Sansevieria.}, language = {en} } @article{JardineLomax2017, author = {Jardine, Phillip E. and Lomax, Barry H.}, title = {Is pollen size a robust proxy for moisture availability?}, series = {Review of palaeobotany and palynology : an international journal}, volume = {246}, journal = {Review of palaeobotany and palynology : an international journal}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0034-6667}, doi = {10.1016/j.revpalbo.2017.06.013}, pages = {161 -- 166}, year = {2017}, abstract = {The development of well-constrained palaeo-proxies that enable the reconstruction of past climate change is becoming an ever more important field of scientific enquiry within the palaeobotanical community, with the potential to deliver broader impacts linked to understanding of future anthropogenic climate change. One of the major uncertainties in predicting climate change is how the hydrological cycle will respond to future warming. Griener and Warny (2015, Review of Palaeobotany and Palynology 221,138-143) suggested that pollen size might be a useful proxy for tracking moisture availability, as pollen size appears to be negatively correlated with moisture. Given the long fossil record of pollen and spores such a proxy would have broad scope and the potential to deliver much needed information. Here we set out to fully evaluate and test the robustness of this proxy. We focus on a number of key issues: controls on pollen size, data analysis, and finally proxy validation. Using this approach we find that there is little theoretical or empirical support for the original relationship proposed by Griener and Warny. Consequently it is currently premature to use pollen size as a moisture availability proxy in the fossil record. However, we recognise that the technique may have potential and conclude by offering a series of recommendations that would rigorously assess and test for a relationship between pollen size and moisture availability. (c) 2017 Elsevier B.V. All rights reserved.}, language = {en} } @article{RainfordHofreiterMayhew2016, author = {Rainford, James L. and Hofreiter, Michael and Mayhew, Peter J.}, title = {Phylogenetic analyses suggest that diversification and body size evolution are independent in insects}, series = {BMC evolutionary biology}, volume = {16}, journal = {BMC evolutionary biology}, publisher = {BioMed Central}, address = {London}, issn = {1471-2148}, doi = {10.1186/s12862-015-0570-3}, pages = {47 -- 55}, year = {2016}, abstract = {Background: Skewed body size distributions and the high relative richness of small-bodied taxa are a fundamental property of a wide range of animal clades. The evolutionary processes responsible for generating these distributions are well described in vertebrate model systems but have yet to be explored in detail for other major terrestrial clades. In this study, we explore the macro-evolutionary patterns of body size variation across families of Hexapoda (insects and their close relatives), using recent advances in phylogenetic understanding, with an aim to investigate the link between size and diversity within this ancient and highly diverse lineage. Results: The maximum, minimum and mean-log body lengths of hexapod families are all approximately log-normally distributed, consistent with previous studies at lower taxonomic levels, and contrasting with skewed distributions typical of vertebrate groups. After taking phylogeny and within-tip variation into account, we find no evidence for a negative relationship between diversification rate and body size, suggesting decoupling of the forces controlling these two traits. Likelihood-based modeling of the log-mean body size identifies distinct processes operating within Holometabola and Diptera compared with other hexapod groups, consistent with accelerating rates of size evolution within these clades, while as a whole, hexapod body size evolution is found to be dominated by neutral processes including significant phylogenetic conservatism. Conclusions: Based on our findings we suggest that the use of models derived from well-studied but atypical clades, such as vertebrates may lead to misleading conclusions when applied to other major terrestrial lineages. Our results indicate that within hexapods, and within the limits of current systematic and phylogenetic knowledge, insect diversification is generally unfettered by size-biased macro-evolutionary processes, and that these processes over large timescales tend to converge on apparently neutral evolutionary processes. We also identify limitations on available data within the clade and modeling approaches for the resolution of trees of higher taxa, the resolution of which may collectively enhance our understanding of this key component of terrestrial ecosystems.}, language = {en} } @article{AliRungeDutbayevetal.2016, author = {Ali, Tahir and Runge, Fabian and Dutbayev, Ayan and Schmuker, Angelika and Solovyeva, Irina and Nigrelli, Lisa and Buch, Ann-Katrin and Xia, Xiaojuan and Ploch, Sebastian and Orren, Ouria and Kummer, Volker and Paule, Juraj and Celik, Ali and Vakhrusheva, Ljudmila and Gabrielyan, Ivan and Thines, Marco}, title = {Microthlaspi erraticum (Jord.) T. Ali et Thines has a wide distribution, ranging from the Alps to the Tien Shan}, series = {Flora : morphology, distribution, functional ecology of plants}, volume = {225}, journal = {Flora : morphology, distribution, functional ecology of plants}, publisher = {American Chemical Society}, address = {Jena}, issn = {0367-2530}, doi = {10.1016/j.flora.2016.09.008}, pages = {76 -- 81}, year = {2016}, abstract = {Microthlaspi is a predominantly Eurasian genus which also occurs in the northernmost parts of Africa (Maghreb). The most widespread species of the genus is M. perfoliatum, which can be found from Sweden to Algeria and from Portugal to China. The other species are thought to have much more confined distribution ranges, often covering only a few hundred kilometres. This is also believed for the diploid M. erraticum, which was recently re-appraised as a taxon independent from the tetra- to hexaploid M. perfoliatum. Previously, M. erraticum was believed to be present only in Central Europe, from the East of France to Slovenia. In order to gain a deeper understanding of the ecology, evolution and migration history of Microthlaspi it was the focus of the current study to investigate, if M. erraticum is present in habitats outside Central Europe, but with microclimates similar to Central Europe. It is demonstrated that M. erraticum is much more widespread than previously thought, while other lineages apart from M. perfoliatum s.str. and M. erraticum seem to have restricted distribution ranges. The latter species was observed from the Alps and their foreland, the Balkans, the mountainous areas around the Black Sea, Southern Siberia, as well as the Altai and Tien Shan mountains. This demonstrates a widespread occurrence of this easily-overlooked species. (C) 2016 Elsevier GmbH. All rights reserved.}, language = {en} } @misc{BreuningerLenhard2017, author = {Breuninger, Holger and Lenhard, Michael}, title = {Expression of the central growth regulator BIG BROTHER is regulated by multiple cis-elements}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-400971}, pages = {10}, year = {2017}, abstract = {Background Much of the organismal variation we observe in nature is due to differences in organ size. The observation that even closely related species can show large, stably inherited differences in organ size indicates a strong genetic component to the control of organ size. Despite recent progress in identifying factors controlling organ growth in plants, our overall understanding of this process remains limited, partly because the individual factors have not yet been connected into larger regulatory pathways or networks. To begin addressing this aim, we have studied the upstream regulation of expression of BIG BROTHER (BB), a central growth-control gene in Arabidopsis thaliana that prevents overgrowth of organs. Final organ size and BB expression levels are tightly correlated, implying the need for precise control of its expression. BB expression mirrors proliferative activity, yet the gene functions to limit proliferation, suggesting that it acts in an incoherent feedforward loop downstream of growth activators to prevent over-proliferation. Results To investigate the upstream regulation of BB we combined a promoter deletion analysis with a phylogenetic footprinting approach. We were able to narrow down important, highly conserved, cis-regulatory elements within the BB promoter. Promoter sequences of other Brassicaceae species were able to partially complement the A. thaliana bb-1 mutant, suggesting that at least within the Brassicaceae family the regulatory pathways are conserved. Conclusions This work underlines the complexity involved in precise quantitative control of gene expression and lays the foundation for identifying important upstream regulators that determine BB expression levels and thus final organ size.}, language = {en} } @article{GeisslerPoyarkovGrismeretal.2015, author = {Geissler, Peter and Poyarkov, Nikolay A. and Grismer, Lee and Nguyen, Truong Q. and An, Hang T. and Neang, Thy and Kupfer, Alexander and Ziegler, Thomas and B{\"o}hme, Wolfgang and M{\"u}ller, Hendrik}, title = {New Ichthyophis species from Indochina (Gymnophiona, Ichthyophiidae): 1. The unstriped forms with descriptions of three new species and the redescriptions of I-acuminatus Taylor, 1960, I-youngorum Taylor, 1960 and I-laosensis Taylor, 1969}, series = {Organisms, diversity \& evolution : official journal of the Gesellschaft f{\"u}r Biologische Systematik}, volume = {15}, journal = {Organisms, diversity \& evolution : official journal of the Gesellschaft f{\"u}r Biologische Systematik}, number = {1}, publisher = {Springer}, address = {Heidelberg}, issn = {1439-6092}, doi = {10.1007/s13127-014-0190-6}, pages = {143 -- 174}, year = {2015}, abstract = {Caecilians of the genus Ichthyophis Fitzinger, 1826 are among the most poorly known amphibian taxa within Southeast Asia. Populations of Ichthyophis from the Indochina region (comprising Cambodia, Laos, and Vietnam) have been assigned to five taxa: Ichthyophis acuminatus, Ichthyophis bannanicus, Ichthyophis kohtaoensis, Ichthyophis laosensis, and Ichthyophis nguyenorum. Barcoding of recently collected specimens indicates that Indochinese congeners form a clade that includes several morphologically and genetically distinct but yet undescribed species. Although body coloration is supported by the molecular analyses as a diagnostic character at species level, unstriped forms are paraphyletic with respect to striped Ichthyophis. Based on our morphological and molecular analyses, three distinct unstriped ichthyophiid species, Ichthyophis cardamomensis sp. nov. from western Cambodia, Ichthyophis catlocensis sp. nov. from southern Vietnam, and Ichthyophis chaloensis sp. nov. from central Vietnam are described as new herein, almost doubling the number of Ichthyophis species known from the Indochinese region. All three new species differ from their unstriped congeners in a combination of morphological and molecular traits. In addition, redescriptions of three unstriped Ichthyophis species (Ichthyophis acuminatus, I. laosensis, I. youngorum) from Indochina and adjacent Thailand are provided.}, language = {en} } @article{ThinesKummer2013, author = {Thines, Marco and Kummer, Volker}, title = {Diversity and species boundaries in floricolous downy mildews}, series = {Mycological progress : international journal of the German Mycological Society}, volume = {12}, journal = {Mycological progress : international journal of the German Mycological Society}, number = {2}, publisher = {Springer}, address = {Heidelberg}, issn = {1617-416X}, doi = {10.1007/s11557-012-0837-7}, pages = {321 -- 329}, year = {2013}, abstract = {Floricolous downy mildews are a monophyletic group of members of the genus Peronospora (Oomycota, Peronosporales). These downy mildews can be found on a variety of families of the Asteridae, including Asteraceae, Campanulaceae, Dipsacaceae, Lamiaceae, and Orobanchaceae. With the exception of Peronospora radii, which can also cause economically relevant losses, sporulation usually takes place only on floral parts of their hosts. However, only very few specimens of these mostly inconspicuous downy mildews have so far been included in molecular phylogenies. Focusing on Lamiaceae, we have investigated multiple specimens of floricolous downy mildews for elucidating species boundaries and host specificity in this group. Based on both mitochondrial and nuclear loci, it became apparent that phylogenetic lineages in the Lamiaceae seem to be host genus specific and significant sequence diversity could be found between lineages. Based on distinctiveness in both phylogenetic reconstructions and morphology, the downy mildew on flowers of Stachys palustris is introduced as a new species, Peronospora jagei sp. nov., which can be morphologically distinguished from Peronospora stigmaticola by broader and shorter conidiospores. The diversity of the floricolous down mildews might be higher than previously assumed, although specimens from a much broader set of samples will be needed to confirm this view.}, language = {en} }