@article{GaalSchickHerzogetal.2012, author = {Gaal, P. and Schick, Daniel and Herzog, Marc and Bojahr, Andre and Shayduk, Roman and Goldshteyn, J. and Navirian, Hengameh A. and Leitenberger, Wolfram and Vrejoiu, Ionela and Khakhulin, D. and Wulff, M. and Bargheer, Matias}, title = {Time-domain sampling of x-ray pulses using an ultrafast sample response}, series = {Applied physics letters}, volume = {101}, journal = {Applied physics letters}, number = {24}, publisher = {American Institute of Physics}, address = {Melville}, issn = {0003-6951}, doi = {10.1063/1.4769828}, pages = {4}, year = {2012}, abstract = {We employ the ultrafast response of a 15.4 nm thin SrRuO3 layer grown epitaxially on a SrTiO3 substrate to perform time-domain sampling of an x-ray pulse emitted from a synchrotron storage ring. Excitation of the sample with an ultrashort laser pulse triggers coherent expansion and compression waves in the thin layer, which turn the diffraction efficiency on and off at a fixed Bragg angle during 5 ps. This is significantly shorter than the duration of the synchrotron x-ray pulse of 100 ps. Cross-correlation measurements of the ultrafast sample response and the synchrotron x-ray pulse allow to reconstruct the x-ray pulse shape.}, language = {en} } @article{TelezhinskyDwarkadasPohl2012, author = {Telezhinsky, Igor O. and Dwarkadas, Vikram V. and Pohl, Martin}, title = {Time-dependent escape of cosmic rays from supernova remnants, and their interaction with dense media}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {541}, journal = {Astronomy and astrophysics : an international weekly journal}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {0004-6361}, doi = {10.1051/0004-6361/201118639}, pages = {11}, year = {2012}, abstract = {Context. Supernova remnants (SNRs) are thought to be the main source of Galactic cosmic rays (CRs) up to the "knee" in CR spectrum. During the evolution of a SNR, the bulk of the CRs are confined inside the SNR shell. The highest-energy particles leave the system continuously, while the remaining adiabatically cooled particles are released when the SNR has expanded sufficiently and decelerated so that the magnetic field at the shock is no longer able to confine them. Particles escaping from the parent system may interact with nearby molecular clouds, producing.-rays in the process via pion decay. The soft gamma-ray spectra observed for a number of SNRs interacting with molecular clouds, however, challenge current theories of non-linear particle acceleration that predict harder spectra. Aims. We study how the spectrum of escaped particles depends on the time-dependent acceleration history in both Type Ia and core-collapse SNRs, as well as on different assumptions about the diffusion coefficient in the vicinity of the SNR. Methods. We solve the CR transport equation in a test-particle approach combined with numerical simulations of SNR evolution. Results. We extend our method for calculating the CR acceleration in SNRs to trace the escaped particles in a large volume around SNRs. We calculate the evolution of the spectra of CRs that have escaped from a SNR into a molecular cloud or dense shell for two diffusion models. We find a strong confinement of CRs in a close region around the SNR, and a strong dilution effect for CRs that were able to propagate out as far as a few SNR radii.}, language = {en} } @article{SurlanHamannKubatetal.2012, author = {Surlan, B. and Hamann, Wolf-Rainer and Kubat, Jirij and Oskinova, Lidia M. and Feldmeier, Achim}, title = {Three-dimensional radiative transfer in clumped hot star winds I influence of clumping on the resonance line formation}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {541}, journal = {Astronomy and astrophysics : an international weekly journal}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {0004-6361}, doi = {10.1051/0004-6361/201118590}, pages = {11}, year = {2012}, abstract = {Context. The true mass-loss rates from massive stars are important for many branches of astrophysics. For the correct modeling of the resonance lines, which are among the key diagnostics of stellar mass-loss, the stellar wind clumping has been found to be very important. To incorporate clumping into a radiative transfer calculation, three-dimensional (3D) models are required. Various properties of the clumps may have a strong impact on the resonance line formation and, therefore, on the determination of empirical mass-loss rates. Aims. We incorporate the 3D nature of the stellar wind clumping into radiative transfer calculations and investigate how different model parameters influence the resonance line formation. Methods. We develop a full 3D Monte Carlo radiative transfer code for inhomogeneous expanding stellar winds. The number density of clumps follows the mass conservation. For the first time, we use realistic 3D models that describe the dense as well as the tenuous wind components to model the formation of resonance lines in a clumped stellar wind. At the same time, we account for non-monotonic velocity fields. Results. The 3D density and velocity wind inhomogeneities show that there is a very strong impact on the resonance line formation. The different parameters describing the clumping and the velocity field results in different line strengths and profiles. We present a set of representative models for various sets of model parameters and investigate how the resonance lines are affected. Our 3D models show that the line opacity is lower for a larger clump separation and shallower velocity gradients within the clumps. Conclusions. Our model demonstrates that to obtain empirically correct mass-loss rates from the UV resonance lines, the wind clumping and its 3D nature must be taken into account.}, language = {en} } @inproceedings{WangMayerDorenkampetal.2012, author = {Wang, Victor C. and Mayer, Frank and Dorenkamp, Marc and Bonaventura, Klaus}, title = {Three-dimensional global area tracking is a valuable quantitative parameter for left ventricular function in athletes}, series = {Medicine and science in sports and exercise : official journal of the American College of Sports Medicine}, volume = {44}, booktitle = {Medicine and science in sports and exercise : official journal of the American College of Sports Medicine}, publisher = {Lippincott Williams \& Wilkins}, address = {Philadelphia}, issn = {0195-9131}, pages = {850 -- 850}, year = {2012}, language = {en} } @article{MaslinPancostWilsonetal.2012, author = {Maslin, Mark A. and Pancost, Richard D. and Wilson, Katy E. and Lewis, Jonathan and Trauth, Martin H.}, title = {Three and half million year history of moisture availability of South West Africa evidence from ODP site 1085 biomarker records}, series = {Palaeogeography, palaeoclimatology, palaeoecology : an international journal for the geo-sciences}, volume = {317}, journal = {Palaeogeography, palaeoclimatology, palaeoecology : an international journal for the geo-sciences}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0031-0182}, doi = {10.1016/j.palaeo.2011.12.009}, pages = {41 -- 47}, year = {2012}, abstract = {Ocean Drilling Program Site 1085 provides a continuous marine sediment record off southern South West Africa for at least the last three and half million years. The n-alkane partial derivative(13) C record from this site records changes in past vegetation and provides an indication of the moisture availability of SW Africa during this time period. Very little variation, and no apparent trend, is observed in the n-alkane delta C-13 record, suggesting stable long-term conditions despite significant changes in East African tectonics and global climate. Slightly higher n-alkane delta C-13 values occur between 3.5 and 2.7 Ma suggesting slightly drier conditions than today. Between 2.5 and 2.7 Ma there is a shift to more negative n-alkane delta C-13 values suggesting slightly wetter conditions during a similar to 0.2 Ma episode that coincides with the intensification of Northern Hemisphere Glaciation (iNHG). From 2.5 to 0.4 Ma the n-alkane delta C-13 values are very consistent, varying by less than +/- 0.5 parts per thousand and suggesting little or no long-term change in the moisture availability of South West Africa over the last 2.5 million years. This is in contrast to the long-term drying trend observed further north offshore from the Namib Desert and in East Africa. A comparison of the climate history of these regions suggests that Southern Africa may have been an area of long-term stability over the last 3.5 Myrs.}, language = {en} } @article{SarauliXuDietzeletal.2012, author = {Sarauli, David and Xu, Chenggang and Dietzel, Birgit and Stiba, Konstanze and Leimk{\"u}hler, Silke and Schulz, Burkhard and Lisdat, Fred}, title = {Thin films of substituted polyanilines interactions with biomolecular systems}, series = {Soft matter}, volume = {8}, journal = {Soft matter}, number = {14}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1744-683X}, doi = {10.1039/c2sm07261k}, pages = {3848 -- 3855}, year = {2012}, abstract = {We use substituted polyanilines for the construction of new polymer electrodes for interaction studies with the redox protein cytochrome c (cyt c) and the enzyme sulfite oxidase (SO). For these purposes four different polyaniline copolymers are chemically synthesized. Three of them are copolymers, containing 2-methoxyaniline-5-sulfonic acid with variable ratios of aniline; the fourth copolymer consists of 3-amino-benzoic acid and aniline. The results show that all polymers are suitable for being immobilized as thin stable films on gold wire and indium tin oxide (ITO) electrode surfaces from DMSO solution. This can be demonstrated by cyclic voltammetry and UV-Vis spectroscopy measurements. Moreover, cyt c can be electrochemically detected not only in solution, but also immobilized on top of the polymer films. Furthermore, the appearance of a significant catalytic current has been demonstrated for the sulfonated polyanilines, when the polymer-coated protein electrode is being measured upon addition of sulfite oxidase, confirming the establishment of a bioanalytical signal chain. Best results have been obtained for the polymer with highest sulfonation grade. The redox switching of the polymer by the enzymatic reaction can also be analyzed by following the spectral properties of the polymer electrode.}, language = {en} } @article{MiasnikovaLaschewskyDePaolietal.2012, author = {Miasnikova, Anna and Laschewsky, Andr{\´e} and De Paoli, Gabriele and Papadakis, Christine M. and M{\"u}ller-Buschbaum, Peter and Funari, Sergio S.}, title = {Thermoresponsive Hydrogels from Symmetrical Triblock Copolymers Poly(styrene-block-(methoxy diethylene glycol acrylate)-block-styrene)}, series = {Langmuir}, volume = {28}, journal = {Langmuir}, number = {9}, publisher = {American Chemical Society}, address = {Washington}, issn = {0743-7463}, doi = {10.1021/la204665q}, pages = {4479 -- 4490}, year = {2012}, abstract = {A series of symmetrical, thermo-responsive triblock copolymers was prepared by reversible addition fragmentation chain transfer (RAFT) polymerization, and studied in aqueous solution with respect to their ability to form hydrogels. Triblock copolymers were composed of two identical, permanently hydrophobic outer blocks, made of low molar mass polystyrene, and of a hydrophilic inner block of variable length, consisting of poly(methoxy diethylene glycol acrylate) PMDEGA. The polymers exhibited a LCST-type phase transition in the range of 20-40 degrees C, which markedly depended on molar mass and concentration. Accordingly, the triblock copolymers behaved as amphiphiles at low temperatures, but became water-insoluble at high temperatures. The temperature dependent self-assembly of the amphiphilic block copolymers in aqueous solution was studied by turbidimetry and rheology at concentrations up to 30 wt \%, to elucidate the impact of the inner thermoresponsive block on the gel properties. Additionally, small-angle X-ray scattering (SAXS) was performed to access the structural changes in the gel with temperature. For all polymers a gel phase was obtained at low temperatures, which underwent a gel-sol transition at intermediate temperatures, well below the cloud point where phase separation occurred. With increasing length of the PMDEGA inner block, the gel-sol transition shifts to markedly lower concentrations, as well as to higher transition temperatures. For the longest PMDEGA block studied (DPn about 450), gels had already formed at 3.5 wt \% at low temperatures. The gel-sol transition of the hydrogels and the LCST-type phase transition of the hydrophilic inner block were found to be independent of each other.}, language = {en} } @article{PetruninRiosecoSobolevetal.2012, author = {Petrunin, Alexey G. and Rioseco, Ernesto Meneses and Sobolev, Stephan Vladimir and Weber, Michael H.}, title = {Thermomechanical model reconciles contradictory geophysical observations at the Dead Sea Basin}, series = {Geochemistry, geophysics, geosystems}, volume = {13}, journal = {Geochemistry, geophysics, geosystems}, number = {8}, publisher = {American Geophysical Union}, address = {Washington}, issn = {1525-2027}, doi = {10.1029/2011GC003929}, pages = {15}, year = {2012}, abstract = {The Dead Sea Transform (DST) comprises a boundary between the African and Arabian plates. During the last 15-20 m.y. more than 100 km of left lateral transform displacement has been accumulated on the DST and about 10 km thick Dead Sea Basin (DSB) was formed in the central part of the DST. Widespread igneous activity since some 20 Ma ago and especially in the last 5 m.y., thin (60-80 km) lithosphere constrained by seismic data and absence of seismicity below the Moho, seem to be quite natural for this tectonically active plate boundary. However, surface heat flow values of less than 50-60 mW/m(2) and deep seismicity in the lower crust (deeper than 20 km) reported for this region are apparently inconsistent with the tectonic settings specific for an active continental plate boundary and with the crustal structure of the DSB. To address these inconsistencies which comprise what we call the "DST heat-flow paradox," we have developed a numerical model that assumes an erosion of initially thick and cold lithosphere just before or during the active faulting at the DST. The optimal initial conditions for the model are defined using transient thermal analysis. From the results of our numerical experiments we conclude that the entire set of observations for the DSB can be explained within the classical pull-apart model assuming that the lithosphere has been thermally eroded at about 20 Ma and the uppermost mantle in the region have relatively weak rheology consistent with experimental data for wet olivine or pyroxenite.}, language = {en} } @phdthesis{Morgenstern2012, author = {Morgenstern, Anne}, title = {Thermokarst and thermal erosion : degradation of Siberian ice-rich permafrost}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-62079}, school = {Universit{\"a}t Potsdam}, year = {2012}, abstract = {Current climate warming is affecting arctic regions at a faster rate than the rest of the world. This has profound effects on permafrost that underlies most of the arctic land area. Permafrost thawing can lead to the liberation of considerable amounts of greenhouse gases as well as to significant changes in the geomorphology, hydrology, and ecology of the corresponding landscapes, which may in turn act as a positive feedback to the climate system. Vast areas of the east Siberian lowlands, which are underlain by permafrost of the Yedoma-type Ice Complex, are particularly sensitive to climate warming because of the high ice content of these permafrost deposits. Thermokarst and thermal erosion are two major types of permafrost degradation in periglacial landscapes. The associated landforms are prominent indicators of climate-induced environmental variations on the regional scale. Thermokarst lakes and basins (alasses) as well as thermo-erosional valleys are widely distributed in the coastal lowlands adjacent to the Laptev Sea. This thesis investigates the spatial distribution and morphometric properties of these degradational features to reconstruct their evolutionary conditions during the Holocene and to deduce information on the potential impact of future permafrost degradation under the projected climate warming. The methodological approach is a combination of remote sensing, geoinformation, and field investigations, which integrates analyses on local to regional spatial scales. Thermokarst and thermal erosion have affected the study region to a great extent. In the Ice Complex area of the Lena River Delta, thermokarst basins cover a much larger area than do present thermokarst lakes on Yedoma uplands (20.0 and 2.2 \%, respectively), which indicates that the conditions for large-area thermokarst development were more suitable in the past. This is supported by the reconstruction of the development of an individual alas in the Lena River Delta, which reveals a prolonged phase of high thermokarst activity since the Pleistocene/Holocene transition that created a large and deep basin. After the drainage of the primary thermokarst lake during the mid-Holocene, permafrost aggradation and degradation have occurred in parallel and in shorter alternating stages within the alas, resulting in a complex thermokarst landscape. Though more dynamic than during the first phase, late Holocene thermokarst activity in the alas was not capable of degrading large portions of Pleistocene Ice Complex deposits and substantially altering the Yedoma relief. Further thermokarst development in existing alasses is restricted to thin layers of Holocene ice-rich alas sediments, because the Ice Complex deposits underneath the large primary thermokarst lakes have thawed completely and the underlying deposits are ice-poor fluvial sands. Thermokarst processes on undisturbed Yedoma uplands have the highest impact on the alteration of Ice Complex deposits, but will be limited to smaller areal extents in the future because of the reduced availability of large undisturbed upland surfaces with poor drainage. On Kurungnakh Island in the central Lena River Delta, the area of Yedoma uplands available for future thermokarst development amounts to only 33.7 \%. The increasing proximity of newly developing thermokarst lakes on Yedoma uplands to existing degradational features and other topographic lows decreases the possibility for thermokarst lakes to reach large sizes before drainage occurs. Drainage of thermokarst lakes due to thermal erosion is common in the study region, but thermo-erosional valleys also provide water to thermokarst lakes and alasses. Besides these direct hydrological interactions between thermokarst and thermal erosion on the local scale, an interdependence between both processes exists on the regional scale. A regional analysis of extensive networks of thermo-erosional valleys in three lowland regions of the Laptev Sea with a total study area of 5,800 km² found that these features are more common in areas with higher slopes and relief gradients, whereas thermokarst development is more pronounced in flat lowlands with lower relief gradients. The combined results of this thesis highlight the need for comprehensive analyses of both, thermokarst and thermal erosion, in order to assess past and future impacts and feedbacks of the degradation of ice-rich permafrost on hydrology and climate of a certain region.}, language = {en} } @phdthesis{Mucic2012, author = {Mucic, Nenad}, title = {Thermodynamics, kinetics and rheology of surfactant adsorption layers at water/oil interfaces}, address = {Potsdam}, year = {2012}, language = {en} } @article{RohrmannKappCarrapaetal.2012, author = {Rohrmann, Alexander and Kapp, Paul and Carrapa, Barbara and Reiners, Peter W. and Guynn, Jerome and Ding, Lin and Heizler, Matthew}, title = {Thermochronologic evidence for plateau formation in central Tibet by 45 Ma}, series = {Geology}, volume = {40}, journal = {Geology}, number = {2}, publisher = {American Institute of Physics}, address = {Boulder}, issn = {0091-7613}, doi = {10.1130/G32530.1}, pages = {187 -- 190}, year = {2012}, abstract = {The timing of Tibetan plateau development remains elusive, despite its importance for evaluating models of continental lithosphere deformation and associated changes in surface elevation and climate. We present new thermochronologic data [biotite and K-feldspar Ar-40/Ar-39, apatite fission track, and apatite (U-Th)/He] from the central Tibetan plateau (Lhasa and Qiangtang terranes). The data indicate that over large regions, rocks underwent rapid to moderate cooling and exhumation during Cretaceous to Eocene time. This was coeval with >50\% upper crustal shortening, suggesting substantial crustal thickening and surface elevation gain. Thermal modeling of combined thermochronometers requires exhumation of most samples to depths of <3 km between 85 and 45 Ma, followed by a decrease in erosional exhumation rate to low values of <0.05 mm/yr. The thermochronological results, when interpreted in the context of the deformation and paleoaltimetric history, are best explained by a scenario of plateau growth that began locally in central Tibet during the Late Cretaceous and expanded to encompass most of central Tibet by 45 Ma.}, language = {en} } @article{RieraGogolinEisert2012, author = {Riera, Arnau and Gogolin, Christian and Eisert, Jens}, title = {Thermalization in nature and on a quantum computer}, series = {Physical review letters}, volume = {108}, journal = {Physical review letters}, number = {8}, publisher = {American Physical Society}, address = {College Park}, issn = {0031-9007}, doi = {10.1103/PhysRevLett.108.080402}, pages = {5}, year = {2012}, abstract = {In this work, we show how Gibbs or thermal states appear dynamically in closed quantum many-body systems, building on the program of dynamical typicality. We introduce a novel perturbation theorem for physically relevant weak system-bath couplings that is applicable even in the thermodynamic limit. We identify conditions under which thermalization happens and discuss the underlying physics. Based on these results, we also present a fully general quantum algorithm for preparing Gibbs states on a quantum computer with a certified runtime and error bound. This complements quantum Metropolis algorithms, which are expected to be efficient but have no known runtime estimates and only work for local Hamiltonians.}, language = {en} } @phdthesis{Deneke2012, author = {Deneke, Carlus}, title = {Theory of mRNA degradation}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-61998}, school = {Universit{\"a}t Potsdam}, year = {2012}, abstract = {One of the central themes of biology is to understand how individual cells achieve a high fidelity in gene expression. Each cell needs to ensure accurate protein levels for its proper functioning and its capability to proliferate. Therefore, complex regulatory mechanisms have evolved in order to render the expression of each gene dependent on the expression level of (all) other genes. Regulation can occur at different stages within the framework of the central dogma of molecular biology. One very effective and relatively direct mechanism concerns the regulation of the stability of mRNAs. All organisms have evolved diverse and powerful mechanisms to achieve this. In order to better comprehend the regulation in living cells, biochemists have studied specific degradation mechanisms in detail. In addition to that, modern high-throughput techniques allow to obtain quantitative data on a global scale by parallel analysis of the decay patterns of many different mRNAs from different genes. In previous studies, the interpretation of these mRNA decay experiments relied on a simple theoretical description based on an exponential decay. However, this does not account for the complexity of the responsible mechanisms and, as a consequence, the exponential decay is often not in agreement with the experimental decay patterns. We have developed an improved and more general theory of mRNA degradation which provides a general framework of mRNA expression and allows describing specific degradation mechanisms. We have made an attempt to provide detailed models for the regulation in different organisms. In the yeast S. cerevisiae, different degradation pathways are known to compete and furthermore most of them rely on the biochemical modification of mRNA molecules. In bacteria such as E. coli, degradation proceeds primarily endonucleolytically, i.e. it is governed by the initial cleavage within the coding region. In addition, it is often coupled to the level of maturity and the size of the polysome of an mRNA. Both for S. cerevisiae and E. coli, our descriptions lead to a considerable improvement of the interpretation of experimental data. The general outcome is that the degradation of mRNA must be described by an age-dependent degradation rate, which can be interpreted as a consequence of molecular aging of mRNAs. Within our theory, we find adequate ways to address this much debated topic from a theoretical perspective. The improvements of the understanding of mRNA degradation can be readily applied to further comprehend the mRNA expression under different internal or environmental conditions such as after the induction of transcription or stress application. Also, the role of mRNA decay can be assessed in the context of translation and protein synthesis. The ultimate goal in understanding gene regulation mediated by mRNA stability will be to identify the relevance and biological function of different mechanisms. Once more quantitative data will become available, our description allows to elaborate the role of each mechanism by devising a suitable model.}, language = {en} } @article{SchadEngbert2012, author = {Schad, Daniel and Engbert, Ralf}, title = {The zoom lens of attention simulating shuffled versus normal text reading using the SWIFT model}, series = {Visual cognition}, volume = {20}, journal = {Visual cognition}, number = {4-5}, publisher = {Wiley}, address = {Hove}, issn = {1350-6285}, doi = {10.1080/13506285.2012.670143}, pages = {391 -- 421}, year = {2012}, abstract = {Assumptions on the allocation of attention during reading are crucial for theoretical models of eye guidance. The zoom lens model of attention postulates that attentional deployment can vary from a sharp focus to a broad window. The model is closely related to the foveal load hypothesis, i.e., the assumption that the perceptual span is modulated by the difficulty of the fixated word. However, these important theoretical concepts for cognitive research have not been tested quantitatively in eye movement models. Here we show that the zoom lens model, implemented in the SWIFT model of saccade generation, captures many important patterns of eye movements. We compared the model's performance to experimental data from normal and shuffled text reading. Our results demonstrate that the zoom lens of attention might be an important concept for eye movement control in reading.}, language = {en} } @article{JacksonSorge2012, author = {Jackson, Gregory and Sorge, Arndt}, title = {The trajectory of institutional change in Germany, 1979-2009}, series = {Journal of European public policy}, volume = {19}, journal = {Journal of European public policy}, number = {8}, publisher = {Routledge, Taylor \& Francis Group}, address = {Abingdon}, issn = {1350-1763}, doi = {10.1080/13501763.2012.709009}, pages = {1146 -- 1167}, year = {2012}, abstract = {Over the last three decades, the German political economy can be characterized by both institutional continuity and change. Understanding the dynamics of institutional change therefore requires an examination of the interplay of changes in formal institutional rules and how organizations respond to these changes by strategic attempts to promote or hinder further change in institutions. The macro-level political story of institutional change shows a number of paradoxes resulting in unexpected and often incomplete forms of market liberalization shaped by continued support for some core features of Germany's social market economy. The resulting erosion of Germany's co-ordinated model of economic organization through networks and business associations has gone hand-in-hand with the attempts to preserve these institutions for core workers and sectors of the economy in the face of changing environments. The result is a more varied institutional landscape characterized by international diffusion of liberal policies and the politics of their variable re-embedding within a long-term path of institutional continuity.}, language = {en} } @misc{FelserCunningsBatterhametal.2012, author = {Felser, Claudia and Cunnings, Ian and Batterham, Claire and Clahsen, Harald}, title = {The timing of island effects in nonnative sentence processing}, series = {Postprints der Universit{\"a}t Potsdam Humanwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam Humanwissenschaftliche Reihe}, issn = {1866-8364}, doi = {10.25932/publishup-41517}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-415179}, pages = {32}, year = {2012}, abstract = {Using the eye-movement monitoring technique in two reading comprehension experiments, this study investigated the timing of constraints on wh-dependencies (so-called island constraints) in first- and second-language (L1 and L2) sentence processing. The results show that both L1 and L2 speakers of English are sensitive to extraction islands during processing, suggesting that memory storage limitations affect L1 and L2 comprehenders in essentially the same way. Furthermore, these results show that the timing of island effects in L1 compared to L2 sentence comprehension is affected differently by the type of cue (semantic fit versus filled gaps) signaling whether dependency formation is possible at a potential gap site. Even though L1 English speakers showed immediate sensitivity to filled gaps but not to lack of semantic fit, proficient German-speaking learners of English as a L2 showed the opposite sensitivity pattern. This indicates that initial wh-dependency formation in L2 processing is based on semantic feature matching rather than being structurally mediated as in L1 comprehension.}, language = {en} } @article{FelserCunningsBatterhametal.2012, author = {Felser, Claudia and Cunnings, Ian and Batterham, Claire and Clahsen, Harald}, title = {The timing of Island effects in nonnative sentence processing}, series = {Studies in second language acquisition}, volume = {34}, journal = {Studies in second language acquisition}, number = {1}, publisher = {Cambridge University Press}, address = {Cambridge}, issn = {0272-2631}, doi = {10.1017/S0272263111000507}, pages = {67 -- 98}, year = {2012}, abstract = {Using the eye-movement monitoring technique in two reading comprehension experiments, this study investigated the timing of constraints on wh-dependencies (so-called island constraints) in first- and second-language (L1 and L2) sentence processing. The results show that both L1 and L2 speakers of English are sensitive to extraction islands during processing, suggesting that memory storage limitations affect L1 and L2 comprehenders in essentially the same way. Furthermore, these results show that the timing of island effects in L1 compared to L2 sentence comprehension is affected differently by the type of cue (semantic fit versus filled gaps) signaling whether dependency formation is possible at a potential gap site. Even though L1 English speakers showed immediate sensitivity to filled gaps but not to lack of semantic fit, proficient German-speaking learners of English as a L2 showed the opposite sensitivity pattern. This indicates that initial wh-dependency formation in L2 processing is based on semantic feature matching rather than being structurally mediated as in L1 comprehension.}, language = {en} } @book{Krivochen2012, author = {Krivochen, Diego Gabriel}, title = {The Syntax and Semantics of the Nominal Construction}, series = {Potsdam Linguistic Investigations}, volume = {8}, journal = {Potsdam Linguistic Investigations}, publisher = {Peter Lang}, address = {Frankfurt am Main}, isbn = {978-3-631-62448-7}, pages = {137}, year = {2012}, language = {en} } @book{ZimmermannOellersFrahmTomuschatetal.2012, author = {Zimmermann, Andreas and Oellers-Frahm, Karin and Tomuschat, Christian and Tams, Christian J.}, title = {The statute of the international court of justice : a commentary}, edition = {2. ed.}, publisher = {Oxford Univ. Press}, address = {Oxford}, isbn = {978-0-19-969299-6}, pages = {1745 S.}, year = {2012}, language = {en} } @article{Griffiths2012, author = {Griffiths, Toni}, title = {The state of jewish memory in York and Winchester}, series = {PaRDeS : Zeitschrift der Vereinigung f{\"u}r J{\"u}dische Studien e.V.}, journal = {PaRDeS : Zeitschrift der Vereinigung f{\"u}r J{\"u}dische Studien e.V.}, number = {18}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {1614-6492}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-61523}, pages = {67 -- 78}, year = {2012}, abstract = {Am Beispiel der englischen St{\"a}dte York und Winchester wird in diesem Artikel das Konzept der Erinnerung von Pierre Nora untersucht, um die Individualit{\"a}t lokaler Ans{\"a}tze der Erinnerung an mittelalterliche englische Judenheiten zu veranschaulichen. Allgemein wird in diesem Beitrag aufgezeigt, wie Erinnerung einerseits aus einem Zeitalter anhaltenden Schweigens befreien und andererseits wieder in ein gr{\"o}ßeres historisches Narrativ integriert werden kann. Vice versa wird ebenfalls untersucht, wie das die j{\"u}dische Erinnerung umschließende Schweigen dennoch seine Fortsetzung im scharfen Gegensatz zu diesem neuen Verst{\"a}ndnis von Erinnerung findet. Abschließend wird im Artikel die Frage gestellt, warum dieses Schweigen anh{\"a}lt und ob Noras Theorie, dass sich Erinnerung kontinuierlich entwickelt, auf die Erfahrungen j{\"u}discher Erinnerung in York und Winchester angewendet werden kann.}, language = {en} } @misc{OskinovaGuerreroHenaultBrunetetal.2012, author = {Oskinova, Lidia M. and Guerrero, Mart{\´i}n A. and H{\´e}nault-Brunet, Vincent and Sun, W. and Chu, You-Hua and Evans, Chris and Gallagher, John S. and Gruendl, Robert A. and Reyes-Iturbide, Jorge}, title = {The slow X-ray pulsar SXP 1062 and associated supernova remnant in the Wing of the Small Magellanic Cloud}, series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe}, number = {591}, issn = {1866-8372}, doi = {10.25932/publishup-41513}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-415135}, pages = {3}, year = {2012}, abstract = {SXP 1062 is an exceptional case of a young neutron star in a wind-fed high-mass X-ray binary associated with a supernova remnant. A unique combination of measured spin period, its derivative, luminosity and young age makes this source a key probe for the physics of accretion and neutron star evolution. Theoretical models proposed to explain the properties of SXP 1062 shall be tested with new data.}, language = {en} } @article{PaschkeStillerRybergetal.2012, author = {Paschke, Marco and Stiller, Manfred and Ryberg, Trond and Weber, Michael H.}, title = {The shallow P-velocity structure of the southern Dead Sea basin derived from near-vertical incidence reflection seismic data in project DESIRE}, series = {Geophysical journal international}, volume = {188}, journal = {Geophysical journal international}, number = {2}, publisher = {Wiley-Blackwell}, address = {Malden}, organization = {DESIRE Grp}, issn = {0956-540X}, doi = {10.1111/j.1365-246X.2011.05270.x}, pages = {524 -- 534}, year = {2012}, abstract = {As a part of the DEad Sea Integrated REsearch (DESIRE) project a near-vertical incidence reflection (NVR) experiment with a profile length of 122 km was completed in spring 2006. The profile crossed the southern Dead Sea basin (DSB), a pull-apart basin due to the strike-slip motion along the Dead Sea Transform (DST). The DST with a total displacement of 107 km since about 18 Ma is part of a left-lateral fault system which connects the spreading centre in the Red Sea with the Taurus collision zone in Turkey over a distance of about 1100 km. The seismic experiment comprises 972 source locations and 1045 receiver locations. Each source was recorded by similar to 180 active receivers and a field data set with 175 000 traces was created. From this data set, 124 444 P-wave first-break traveltimes have been picked. With these traveltimes a tomographic inversion was carried out, resulting in a 2-D P-wave velocity model with a rms error of 20.9 ms. This model is dominated by a low-velocity region associated with the DSB. Within the DSB, the model shows clearly the position of the Lisan salt diapir, identified by a high-velocity zone. A further feature is an unexpected laterally low-velocity zone with P-velocities of 3 km s1 embedded in regions with 4 km s1 in the shallow part on the west side of the DSB. Another observation is an anticlinal structure west of the DSB interpretated to the related Syrian arc fold belt.}, language = {en} } @article{LopezTarazonBatallaVillanuevaVericatetal.2012, author = {Lopez-Tarazon, Jose Andres and Batalla Villanueva, Ramon J. and Vericat, Damia and Francke, Till}, title = {The sediment budget of a highly dynamic mesoscale catchment the River Isabena}, series = {Geomorphology : an international journal on pure and applied geomorphology}, volume = {138}, journal = {Geomorphology : an international journal on pure and applied geomorphology}, number = {1}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0169-555X}, doi = {10.1016/j.geomorph.2011.08.020}, pages = {15 -- 28}, year = {2012}, abstract = {The paper presents the sediment budget of the Isabena basin, a highly dynamic 445-km(2) catchment located in the Central Pyrenees that is patched by highly erodible areas (i.e., badlands). The budget for the period 2007-2009 is constructed following a methodology that allows the interpolation of intermittent measurements of suspended sediment concentrations and enables a subsequent calculation of sediment loads. Data allow specification of the contribution of each subbasin to the water and sediment yield in the catchment outlet. Mean annual sediment load was 235,000 t y(-1). Specific sediment yield reached 2000 t km(-2) y(-1), a value that indicates very high sedimentary activity, especially in the case of Villacarli and Lascuarre subcatchments, were most badlands are located. The specific sediment yield obtained for the entire Isabena is 527 t km(-2) y(-1), a high value for such a mesoscale basin. Results show that a small part of the area (i.e., 1\%) controls most of the catchment's gross sediment contribution. Sediment delivery ratio (ratio between sediment input from primary sources and basin export) has been estimated at around 90\%, while in-channel storage represents the 5\% of the annual load on average. The high connectivity between sediment sources (i.e., badlands) and transfer paths (i.e., streamcourses) exacerbates the influence of the local sediment production on the catchment's sediment yield, a quite unusual fact for a basin of this scale.}, language = {en} } @article{StedePeldszus2012, author = {Stede, Manfred and Peldszus, Andreas}, title = {The role of illocutionary status in the usage conditions of causal connectives and in coherence relations}, series = {Journal of pragmatics : an interdisciplinary journal of language studies}, volume = {44}, journal = {Journal of pragmatics : an interdisciplinary journal of language studies}, number = {2}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0378-2166}, doi = {10.1016/j.pragma.2012.01.004}, pages = {214 -- 229}, year = {2012}, abstract = {The meaning of linguistic connectives has often been characterized in terms of their position in a bipartite (semantic, pragmatic) or a tripartite (content, epistemic, speech act) structure of domains, depending on what kinds of entities are being connected (largely: propositions or speech acts). This paper argues that a more fine-grained analysis can be achieved by directing some more attention to the characterization of the entities being related. We propose an inventory of categories of illocutionary status for labelling the spans that are being connected. On this basis, the distinction between the content and the epistemic domain, in particular, can be made more explicit. Focusing on the group of causal connectives in German, we conducted a corpus annotation study from which we derived distinct pragmatic 'usage profiles' of the most frequent causal connectives. Finally, we offer some suggestions on the role of illocutions in relation-based accounts of discourse structure.}, language = {en} } @misc{Koss2012, author = {Koss, Michael}, title = {The role of governments in legislative agenda setting}, series = {West European politics}, volume = {35}, journal = {West European politics}, number = {2}, publisher = {Routledge, Taylor \& Francis Group}, address = {Abingdon}, issn = {0140-2382}, doi = {10.1080/01402382.2011.648482}, pages = {436 -- 437}, year = {2012}, language = {en} } @article{MetzlerJeon2012, author = {Metzler, Ralf and Jeon, Jae-Hyung}, title = {The role of ergodicity in anomalous stochastic processes - analysis of single-particle trajectories}, series = {Physica scripta : an international journal for experimental and theoretical physics}, volume = {86}, journal = {Physica scripta : an international journal for experimental and theoretical physics}, number = {5}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0031-8949}, doi = {10.1088/0031-8949/86/05/058510}, pages = {5}, year = {2012}, abstract = {Single-particle experiments produce time series x(t) of individual particle trajectories, frequently revealing anomalous diffusion behaviour. Typically, individual x(t) are evaluated in terms of time-averaged quantities instead of ensemble averages. Here we discuss the behaviour of the time-averaged mean squared displacement of different stochastic processes giving rise to anomalous diffusion. In particular, we pay attention to the ergodic properties of these processes, i.e. the (non)equivalence of time and ensemble averages.}, language = {en} } @phdthesis{Langerwisch2012, author = {Langerwisch, Fanny}, title = {The Role of climate and land use change on the riverine carbon fluxes in Amazonia}, address = {Potsdam}, pages = {XII, 135 S.}, year = {2012}, language = {en} } @article{RomeroSanchezMegiasKrahe2012, author = {Romero-Sanchez, Monica and Megias, Jesus L. and Krah{\´e}, Barbara}, title = {The role of alcohol and victim sexual interest in spanish students' perceptions of sexual assault}, series = {Journal of interpersonal violence : concerned with the study and treatment of victims and perpetrators of physical and sexual violence}, volume = {27}, journal = {Journal of interpersonal violence : concerned with the study and treatment of victims and perpetrators of physical and sexual violence}, number = {11}, publisher = {Sage Publ.}, address = {Thousand Oaks}, issn = {0886-2605}, doi = {10.1177/0886260511432149}, pages = {2230 -- 2258}, year = {2012}, abstract = {Two studies investigated the effects of information related to rape myths on Spanish college students' perceptions of sexual assault. In Study 1, 92 participants read a vignette about a nonconsensual sexual encounter and rated whether it was a sexual assault and how much the woman was to blame. In the scenario, the man either used physical force or offered alcohol to the woman to overcome her resistance. Rape myth acceptance (RMA) was measured as an individual difference variable. Participants were more convinced that the incident was a sexual assault and blamed the woman less when the man had used force rather than offering her alcohol. In Study 2, 164 college students read a scenario in which the woman rejected a man's sexual advances after having either accepted or turned down his offer of alcohol. In addition, the woman was either portrayed as being sexually attracted to him or there was no mention of her sexual interest. Participants' RMA was again included. High RMA participants blamed the victim more than low RMA participants and were less certain that the incident was a sexual assault, especially when the victim had accepted alcohol and was described as being sexually attracted to the man. The findings are discussed in terms of their implications for the prevention and legal prosecution of sexual assault.}, language = {en} } @article{BaibolatovSpahn2012, author = {Baibolatov, Yernur and Spahn, Frank}, title = {The role of adhesion for ensembles of mesoscopic particles}, series = {Granular matter}, volume = {14}, journal = {Granular matter}, number = {2}, publisher = {Springer}, address = {New York}, issn = {1434-5021}, doi = {10.1007/s10035-012-0325-4}, pages = {197 -- 202}, year = {2012}, abstract = {We present a toy-model for an ensemble of adhering mesoscopic constituents in order to estimate the effect of the granular temperature on the sizes of embedded aggregates. The major goal is to illustrate the relation between the mean aggregate size and the granular temperature in dense planetary rings. For sake of simplicity we describe the collective behavior of the ensemble by means of equilibrium statistical mechanics, motivated by the stationary temperature established by the balance between a Kepler-shear driven viscous heating and inelastic cooling in these cosmic granular disks. The ensemble consists of N' equal constituents which can form cluster(s) or move like a gas-or both phases may coexist-depending on the (granular) temperature of the system. We assume the binding energy levels of a cluster E-c = -N-c gamma a to be determined by a certain contact number N-c, given by the configuration of N constituents of the aggregate (energy per contact: -gamma a). By applying canonical and grand-canonical ensembles, we show that the granular temperature T of a gas of constituents (their mean kinetic energy) controls the size distribution of the aggregates. They are the smaller the higher the granular temperature T is. A mere gas of single constituents is sustained for T >> gamma a. In the case of large clusters (low temperatures T << gamma a) the size distribution becomes a Poissonian.}, language = {en} } @article{DeFrenneGraaeBrunetetal.2012, author = {De Frenne, Pieter and Graae, Bente J. and Brunet, J{\"o}rg and Shevtsova, Anna and De Schrijver, An and Chabrerie, Olivier and Cousins, Sara A. O. and Decocq, Guillaume and Diekmann, Martin and Hermy, Martin and Heinken, Thilo and Kolb, Annette and Nilsson, Christer and Stanton, Sharon and Verheyen, Kris}, title = {The response of forest plant regeneration to temperature variation along a latitudinal gradient}, series = {Annals of botany}, volume = {109}, journal = {Annals of botany}, number = {5}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {0305-7364}, doi = {10.1093/aob/mcs015}, pages = {1037 -- 1046}, year = {2012}, abstract = {The response of forest herb regeneration from seed to temperature variations across latitudes was experimentally assessed in order to forecast the likely response of understorey community dynamics to climate warming. Seeds of two characteristic forest plants (Anemone nemorosa and Milium effusum) were collected in natural populations along a latitudinal gradient from northern France to northern Sweden and exposed to three temperature regimes in growth chambers (first experiment). To test the importance of local adaptation, reciprocal transplants were also made of adult individuals that originated from the same populations in three common gardens located in southern, central and northern sites along the same gradient, and the resulting seeds were germinated (second experiment). Seedling establishment was quantified by measuring the timing and percentage of seedling emergence, and seedling biomass in both experiments. Spring warming increased emergence rates and seedling growth in the early-flowering forb A. nemorosa. Seedlings of the summer-flowering grass M. effusum originating from northern populations responded more strongly in terms of biomass growth to temperature than southern populations. The above-ground biomass of the seedlings of both species decreased with increasing latitude of origin, irrespective of whether seeds were collected from natural populations or from the common gardens. The emergence percentage decreased with increasing home-away distance in seeds from the transplant experiment, suggesting that the maternal plants were locally adapted. Decreasing seedling emergence and growth were found from the centre to the northern edge of the distribution range for both species. Stronger responses to temperature variation in seedling growth of the grass M. effusum in the north may offer a way to cope with environmental change. The results further suggest that climate warming might differentially affect seedling establishment of understorey plants across their distribution range and thus alter future understorey plant dynamics.}, language = {en} } @inproceedings{BoehmPolzinLuethetal.2012, author = {Boehm, Andreas and Polzin, A. and Lueth, Anja and Kleuser, Burkhard and Rassaf, T. and Kelm, M. and Kroemer, H. K. and Schroer, K. and Rauch, B. H.}, title = {The release of sphingosine-1-phosphate from human platelets during acute coronary syndrome is attenuated by aspirin}, series = {NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY}, volume = {385}, booktitle = {NAUNYN-SCHMIEDEBERGS ARCHIVES OF PHARMACOLOGY}, publisher = {Springer}, address = {New York}, issn = {0028-1298}, pages = {12 -- 12}, year = {2012}, language = {en} } @article{EliazarMetzler2012, author = {Eliazar, Iddo and Metzler, Ralf}, title = {The RARE model a generalized approach to random relaxation processes in disordered systems}, series = {The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr}, volume = {137}, journal = {The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr}, number = {23}, publisher = {American Institute of Physics}, address = {Melville}, issn = {0021-9606}, doi = {10.1063/1.4770266}, pages = {9}, year = {2012}, abstract = {This paper introduces and analyses a general statistical model, termed the RAndom RElaxations (RARE) model, of random relaxation processes in disordered systems. The model considers excitations that are randomly scattered around a reaction center in a general embedding space. The model's input quantities are the spatial scattering statistics of the excitations around the reaction center, and the chemical reaction rates between the excitations and the reaction center as a function of their mutual distance. The framework of the RARE model is versatile and a detailed stochastic analysis of the random relaxation processes is established. Analytic results regarding the duration and the range of the random relaxation processes, as well as the model's thermodynamic limit, are obtained in closed form. In particular, the case of power-law inputs, which turn out to yield stretched exponential relaxation patterns and asymptotically Paretian relaxation ranges, is addressed in detail.}, language = {en} } @article{LiermannHamannOskinova2012, author = {Liermann, A. and Hamann, Wolf-Rainer and Oskinova, Lidia M.}, title = {The Quintuplet cluster III. Hertzsprung-Russell diagram and cluster age}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {540}, journal = {Astronomy and astrophysics : an international weekly journal}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {0004-6361}, doi = {10.1051/0004-6361/201117534}, pages = {9}, year = {2012}, abstract = {The Quintuplet, one of three massive stellar clusters in the Galactic center (GC), is located about 30 pc in projection from Sagittarius A*. We aim at the construction of the Hertzsprung-Russell diagram (HRD) of the cluster to study its evolution and to constrain its star-formation history. For this purpose we use the most complete spectral catalog of the Quintuplet stars. Based on the K-band spectra we determine stellar temperatures and luminosities for all stars in the catalog under the assumption of a uniform reddening towards the cluster. We find two groups in the resulting HRD: early-type OB stars and late-type KM stars, well separated from each other. By comparison with Geneva stellar evolution models we derive initial masses exceeding 8 M-circle dot for the OB stars. In the HRD these stars are located along an isochrone corresponding to an age of about 4 Myr. This confirms previous considerations, where a similar age estimate was based on the presence of evolved Wolf-Rayet stars in the cluster. We derive number ratios for the various spectral subtype groups (e.g. N-WR/N-O, N-WC/N-WN) and compare them with predictions of population synthesis models. We find that an instantaneous burst of star formation at about 3.3 to 3.6 Myr ago is the most likely scenario to form the Quintuplet cluster. Furthermore, we apply a mass-luminosity relation to construct the initial mass function (IMF) of the cluster. We find indications for a slightly top-heavy IMF. The late-type stars in the LHO catalog are red giant branch (RGB) stars or red supergiants (RSGs) according to their spectral signatures. Under the assumption that they are located at about the distance of the Galactic center we can derive their luminosities. The comparison with stellar evolution models reveals that the initial masses of these stars are lower than 15 M-circle dot implying that they needed about 15 Myr (RSG) or even more than 30 Myr (RGB) to evolve into their present stage. It might be suspected that these late-type stars do not physically belong to the Quintuplet cluster. Indeed, most of them disqualify as cluster members because their radial velocities differ too much from the cluster average. Nevertheless, five of the brightest RGB/RSG stars from the LHO catalog share the mean radial velocity of the Quintuplet, and thus remain highly suspect for being gravitationally bound members. If so, this would challenge the cluster formation and evolution scenario.}, language = {en} } @article{RocchettiSharmaWulfetangeetal.2012, author = {Rocchetti, Alessandra and Sharma, Tripti and Wulfetange, Camilla and Scholz-Starke, Joachim and Grippa, Alexandra and Carpaneto, Armando and Dreyer, Ingo and Vitale, Alessandro and Czempinski, Katrin and Pedrazzini, Emanuela}, title = {The putative K+ channel subunit AtKCO3 forms stable dimers in arabidopsis}, series = {Frontiers in plant science}, volume = {3}, journal = {Frontiers in plant science}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-462X}, doi = {10.3389/fpls.2012.00251}, pages = {13}, year = {2012}, abstract = {The permeation pore of K+ channels is formed by four copies of the pore domain. AtKCO3 is the only putative voltage-independent K+ channel subunit of Arabidopsis thaliana with a single pore domain. KCO3-like proteins recently emerged in evolution and, to date, have been found only in the genus Arabidopsis (A. thaliana and A. lyrata). We show that the absence of KCO3 does not cause marked changes in growth under various conditions. Only under osmotic stress we observed reduced root growth of the kco3-1 null-allele line. This phenotype was complemented by expressing a KCO3 mutant with an inactive pore, indicating that the function of KCO3 under osmotic stress does not depend on its direct ability to transport ions. Constitutively overexpressed AtKCO3 or AtKCO3::G FP are efficiently sorted to the tonoplast indicating that the protein is approved by the endoplasmic reticulum quality control. However, vacuoles isolated from transgenic plants do not have significant alterations in current density. Consistently, both AtKCO3 and AtKCO3::GFP are detected as homodimers upon velocity gradient centrifugation, an assembly state that would not allow for activity. We conclude that if AtKCO3 ever functions as a K+ channel, active tetramers are held by particularly weak interactions, are formed only in unknown specific conditions and may require partner proteins.}, language = {en} } @article{RettigPohl2012, author = {Rettig, R. and Pohl, M.}, title = {The properties of non-thermal X-ray filaments in young supernova remnants}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {545}, journal = {Astronomy and astrophysics : an international weekly journal}, number = {5}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {0004-6361}, doi = {10.1051/0004-6361/201219409}, pages = {9}, year = {2012}, abstract = {Context. Young supernova remnants (SNRs) exhibit narrow filaments of non-thermal X-ray emission whose widths can be limited either by electron energy losses or damping of the magnetic field. Aims. We want to investigate whether or not different models of these filaments can be observationally tested. Methods. Using observational parameters of four historical remnants, we calculated the filament profiles and compared the spectra of the filaments with those of the total non-thermal emission. For that purpose, we solved a one-dimensional stationary transport equation for the isotropic differential number density of the electrons. Results. We find that the difference between the spectra of filament and total non-thermal emission above 1 keV is more pronounced in the damping model than in the energy-loss model. Conclusions. A considerable damping of the magnetic field can result in an observable difference between the spectra of filament and total non-thermal emission, thus potentially permitting an observational discrimination between the energy-loss model and the damping model of the X-ray filaments.}, language = {en} } @article{HejaziSteupFettke2012, author = {Hejazi, Mahdi and Steup, Martin and Fettke, J{\"o}rg}, title = {The plastidial glucan, water dikinase (GWD) catalyses multiple phosphotransfer reactions}, series = {The FEBS journal}, volume = {279}, journal = {The FEBS journal}, number = {11}, publisher = {Wiley-Blackwell}, address = {Malden}, issn = {1742-464X}, doi = {10.1111/j.1742-4658.2012.08576.x}, pages = {1953 -- 1966}, year = {2012}, abstract = {The plant genome encodes at least two distinct and evolutionary conserved plastidial starch-related dikinases that phosphorylate a low percentage of glucosyl residues at the starch granule surface. Esterification of starch favours the transition of highly ordered a-glucans to a less ordered state and thereby facilitates the cleavage of interglucose bonds by hydrolases. Metabolically most important is the phosphorylation at position C6, which is catalysed by the glucan, water dikinase (GWD). The reactions mediated by recombinant wild-type GWD from Arabidopsis thaliana (AtGWD) and from Solanum tuberosum (StGWD) were studied. Two mutated proteins lacking the conserved histidine residue that is indispensible for glucan phosphorylation were also included. The wild-type GWDs consume approximately 20\% more ATP than is required for glucan phosphorylation. Similarly, although incapable of phosphorylating a-glucans, the two mutated dikinase proteins are capable of degrading ATP. Thus, consumption of ATP and phosphorylation of a-glucans are not strictly coupled processes but, to some extent, occur as independent phosphotransfer reactions. As revealed by incubation of the GWDs with [gamma-33P]ATP, the consumption of ATP includes the transfer of the gamma-phosphate group to the GWD protein but this autophosphorylation does not require the conserved histidine residue. Thus, the GWD proteins possess two vicinal phosphorylation sites, both of which are transiently phosphorylated. Following autophosphorylation at both sites, native dikinases flexibly use various terminal phosphate acceptors, such as water, alpha-glucans, AMP and ADP. A model is presented describing the complex phosphotransfer reactions of GWDs as affected by the availability of the various acceptors.}, language = {en} } @article{GonzalezRiedelsbergerMoralesNavarroetal.2012, author = {Gonzalez, Wendy and Riedelsberger, Janin and Morales-Navarro, Samuel E. and Caballero, Julio and Alzate-Morales, Jans H. and Gonzalez-Nilo, Fernando D. and Dreyer, Ingo}, title = {The pH sensor of the plant K+-uptake channel KAT1 is built from a sensory cloud rather than from single key amino acids}, series = {The biochemical journal}, volume = {442}, journal = {The biochemical journal}, number = {7}, publisher = {Portland Press}, address = {London}, issn = {0264-6021}, doi = {10.1042/BJ20111498}, pages = {57 -- 63}, year = {2012}, abstract = {The uptake of potassium ions (K+) accompanied by an acidification of the apoplasm is a prerequisite for stomatal opening. The acidification (approximately 2-2.5 pH units) is perceived by voltage-gated inward potassium channels (K-in) that then can open their pores with lower energy cost. The sensory units for extracellular pH in stomatal K-in channels are proposed to be histidines exposed to the apoplasm. However, in the Arabidopsis thaliana stomatal K-in channel KAT1, mutations in the unique histidine exposed to the solvent (His(267)) do not affect the pH dependency. We demonstrate in the present study that His(267) of the KAT1 channel cannot sense pH changes since the neighbouring residue Phe(266) shifts its pK(a) to undetectable values through a cation-pi interaction. Instead, we show that Glu(240) placed in the extracellular loop between transmembrane segments S5 and S6 is involved in the extracellular acid activation mechanism. Based on structural models we propose that this region may serve as a molecular link between the pH- and the voltage-sensor. Like Glu(240), several other titratable residues could contribute to the pH-sensor of KAT1, interact with each other and even connect such residues far away from the voltage-sensor with the gating machinery of the channel.}, language = {en} } @inproceedings{GonzalezRiedelsbergerMoralesNavarroetal.2012, author = {Gonzalez, W. and Riedelsberger, J. and Morales-Navarro, S. E. and Caballero, Julio and Alzate-Morales, Jans H. and Gonzalez-Nilo, F. D. and Dreyer, Ingo}, title = {The pH sensor of the plant K plus uptake channel KAT1 is built from a sensory cloud rather than from single key amino acids}, series = {The FEBS journal}, volume = {279}, booktitle = {The FEBS journal}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {1742-464X}, pages = {455 -- 455}, year = {2012}, language = {en} } @article{ZamagniMuttiBallatoetal.2012, author = {Zamagni, Jessica and Mutti, Maria and Ballato, Paolo and Kosir, Adrijan}, title = {The Paleocene-Eocene thermal maximum (PETM) in shallow-marine successions of the Adriatic carbonate platform (SW Slovenia)}, series = {Geological Society of America bulletin}, volume = {124}, journal = {Geological Society of America bulletin}, number = {7-8}, publisher = {American Institute of Physics}, address = {Boulder}, issn = {0016-7606}, doi = {10.1130/B30553.1}, pages = {1071 -- 1086}, year = {2012}, abstract = {The Paleocene-Eocene thermal maximum represents one of the most rapid and extreme warming events in the Cenozoic. Shallow-water stratigraphic sections from the Adriatic carbonate platform offer a rare opportunity to learn about the nature of Paleocene-Eocene thermal maximum and the effects on shallow-water ecosystems. We use carbon and oxygen isotope stratigraphy, in conjunction with detailed larger benthic foraminiferal biostratigraphy, to establish a high-resolution paleoclimatic record for the Paleocene-Eocene thermal maximum. A prominent negative excursion in delta C-13 curves of bulk-rock (similar to 1 parts per thousand-3 parts per thousand), matrix (similar to 4 parts per thousand), and foraminifera (similar to 6 parts per thousand) is interpreted as the carbon isotope excursion during the Paleocene-Eocene thermal maximum. The strongly C-13-depleted delta(1)d(3)C record of our shallow-marine carbonates compared to open-marine records could result from organic matter oxidation, suggesting intensified weathering, runoff, and organic matter flux. The Ilerdian larger benthie foraminiferal turnover is documented in detail based on high-resolution correlation with the carbon isotopic excursion. The turnover is described as a two-step process, with the first step (early Ilerdian) marked by a rapid diversification of small alveolinids and nummulitids with weak adult dimorphism, possibly as adaptations to fluctuating Paleocene-Eocene thermal maximum nutrient levels, and a second step (middle Ilerdian) characterized by a further specific diversification, increase of shell size, and well-developed adult dimorphism. Within an evolutionary scheme controlled by long-term biological processes, we argue that high seawater temperatures could have stimulated the early Ilerdian rapid specific diversification. Together, these data help elucidate the effects of global warming and associated feedbacks in shallow-water ecosystems, and by inference, could serve as an assessment analog for future changes.}, language = {en} } @article{WinckRianoPachonSommeretal.2012, author = {Winck, Flavia V. and Riano-Pachon, Diego M. and Sommer, Frederik and Rupprecht, Jens and M{\"u}ller-R{\"o}ber, Bernd}, title = {The nuclear proteome of the green alga Chlamydomonas reinhardtii}, series = {Proteomics}, volume = {12}, journal = {Proteomics}, number = {1}, publisher = {Wiley-Blackwell}, address = {Malden}, issn = {1615-9853}, doi = {10.1002/pmic.201000782}, pages = {95 -- 100}, year = {2012}, abstract = {Nuclear proteins play a central role in regulating gene expression. Their identification is important for understanding how the nuclear repertoire changes over time under different conditions. Nuclear proteins are often underrepresented in proteomic studies due to the frequently low abundance of proteins involved in regulatory processes. So far, only few studies describing the nuclear proteome of plant species have been published. Recently, the genome sequence of the unicellular green alga Chlamydomonas reinhardtii has been obtained and annotated, allowing the development of further detailed studies for this organism. However, a detailed description of its nuclear proteome has not been reported so far. Here, we present an analysis of the nuclear proteome of the sequenced Chlamydomonas strain cc503. Using LC-MS/MS, we identified 672 proteins from nuclei isolates with a maximum 1\% peptide spectrum false discovery rate. Besides well-known proteins (e.g. histones), transcription factors and other transcriptional regulators (e.g. tubby and HMG) were identified. The presence of protein motifs in nuclear proteins was investigated by computational tools, and specific over-represented protein motifs were identified. This study provides new insights into the complexity of the nuclear environment and reveals novel putative protein targets for further studies of nuclear mechanisms.}, language = {en} } @unpublished{AlsaedyTarkhanov2012, author = {Alsaedy, Ammar and Tarkhanov, Nikolai Nikolaevich}, title = {The method of Fischer-Riesz equations for elliptic boundary value problems}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-61792}, year = {2012}, abstract = {We develop the method of Fischer-Riesz equations for general boundary value problems elliptic in the sense of Douglis-Nirenberg. To this end we reduce them to a boundary problem for a (possibly overdetermined) first order system whose classical symbol has a left inverse. For such a problem there is a uniquely determined boundary value problem which is adjoint to the given one with respect to the Green formula. On using a well elaborated theory of approximation by solutions of the adjoint problem, we find the Cauchy data of solutions of our problem.}, language = {en} } @article{DimitrovaFernandesKoppitz2012, author = {Dimitrova, Ilinka and Fernandes, Vitor H. and Koppitz, J{\"o}rg}, title = {The maximal subsemigroups of semigroups of transformations preserving or reversing the orientation on a finite chain}, series = {Publicationes mathematicae}, volume = {81}, journal = {Publicationes mathematicae}, number = {1-2}, publisher = {Institutum Mathematicum Universitatis Debreceniensis, Debreceni Tudom{\´a}nyegyetem Matematikai Int{\´e}zete}, address = {Debrecen}, issn = {0033-3883}, doi = {10.5486/PMD.2012.4897}, pages = {11 -- 29}, year = {2012}, abstract = {The study of the semigroups OPn, of all orientation-preserving transformations on an n-element chain, and ORn, of all orientation-preserving or orientation-reversing transformations on an n-element chain, has began in [17] and [5]. In order to bring more insight into the subsemigroup structure of OPn and ORn, we characterize their maximal subsemigroups.}, language = {en} } @article{BrotmanLandauPninietal.2012, author = {Brotman, Yariv and Landau, Udi and Pnini, Smadar and Lisec, Jan and Balazadeh, Salma and M{\"u}ller-R{\"o}ber, Bernd and Zilberstein, Aviah and Willmitzer, Lothar and Chet, Ilan and Viterbo, Ada}, title = {The LysM Receptor-Like Kinase LysM RLK1 is required to activate defense and abiotic-stress responses induced by overexpression of fungal chitinases in arabidopsis plants}, series = {Molecular plant}, volume = {5}, journal = {Molecular plant}, number = {5}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {1674-2052}, doi = {10.1093/mp/sss021}, pages = {1113 -- 1124}, year = {2012}, abstract = {Application of crab shell chitin or pentamer chitin oligosaccharide to Arabidopsis seedlings increased tolerance to salinity in wild-type but not in knockout mutants of the LysM Receptor-Like Kinase1 (CERK1/LysM RLK1) gene, known to play a critical role in signaling defense responses induced by exogenous chitin. Arabidopsis plants overexpressing the endochitinase chit36 and hexoaminidase excy1 genes from the fungus Trichoderma asperelleoides T203 showed increased tolerance to salinity, heavy-metal stresses, and Botrytis cinerea infection. Resistant lines, overexpressing fungal chitinases at different levels, were outcrossed to lysm rlk1 mutants. Independent homozygous hybrids lost resistance to biotic and abiotic stresses, despite enhanced chitinase activity. Expression analysis of 270 stress-related genes, including those induced by reactive oxygen species (ROS) and chitin, revealed constant up-regulation (at least twofold) of 10 genes in the chitinase-overexpressing line and an additional 76 salt-induced genes whose expression was not elevated in the lysm rlk1 knockout mutant or the hybrids harboring the mutation. These findings elucidate that chitin-induced signaling mediated by LysM RLK1 receptor is not limited to biotic stress response but also encompasses abiotic-stress signaling and can be conveyed by ectopic expression of chitinases in plants.}, language = {en} } @unpublished{TarkhanovWallenta2012, author = {Tarkhanov, Nikolai Nikolaevich and Wallenta, Daniel}, title = {The Lefschetz number of sequences of trace class curvature}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-56969}, year = {2012}, abstract = {For a sequence of Hilbert spaces and continuous linear operators the curvature is defined to be the composition of any two consecutive operators. This is modeled on the de Rham resolution of a connection on a module over an algebra. Of particular interest are those sequences for which the curvature is "small" at each step, e.g., belongs to a fixed operator ideal. In this context we elaborate the theory of Fredholm sequences and show how to introduce the Lefschetz number.}, language = {en} } @misc{KaplanHarelKaplanLevyetal.2012, author = {Kaplan, Aaron and Harel, Moshe and Kaplan-Levy, Ruth N. and Hadas, Ora and Sukenik, Assaf and Dittmann-Th{\"u}nemann, Elke}, title = {The languages spoken in the water body (or the biological role of cyanobacterial toxins)}, series = {Frontiers in microbiology}, volume = {3}, journal = {Frontiers in microbiology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-302X}, doi = {10.3389/fmicb.2012.00138}, pages = {11}, year = {2012}, abstract = {Although intensification of toxic cyanobacterial blooms over the last decade is a matter of growing concern due to bloom impact on water quality, the biological role of most of the toxins produced is not known. In this critical review we focus primarily on the biological role of two toxins, microcystins and cylindrospermopsin, in inter- and intra-species communication and in nutrient acquisition. We examine the experimental evidence supporting some of the dogmas in the field and raise several open questions to be dealt with in future research. We do not discuss the health and environmental implications of toxin presence in the water body.}, language = {en} } @book{AppeltauerHirschfeld2012, author = {Appeltauer, Malte and Hirschfeld, Robert}, title = {The JCop language specification : Version 1.0, April 2012}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-193-6}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-60208}, publisher = {Universit{\"a}t Potsdam}, pages = {iv, 48}, year = {2012}, abstract = {Program behavior that relies on contextual information, such as physical location or network accessibility, is common in today's applications, yet its representation is not sufficiently supported by programming languages. With context-oriented programming (COP), such context-dependent behavioral variations can be explicitly modularized and dynamically activated. In general, COP could be used to manage any context-specific behavior. However, its contemporary realizations limit the control of dynamic adaptation. This, in turn, limits the interaction of COP's adaptation mechanisms with widely used architectures, such as event-based, mobile, and distributed programming. The JCop programming language extends Java with language constructs for context-oriented programming and additionally provides a domain-specific aspect language for declarative control over runtime adaptations. As a result, these redesigned implementations are more concise and better modularized than their counterparts using plain COP. JCop's main features have been described in our previous publications. However, a complete language specification has not been presented so far. This report presents the entire JCop language including the syntax and semantics of its new language constructs.}, language = {en} } @inproceedings{KnollWiedemannmHeckhausenetal.2012, author = {Knoll, Nina and Wiedemannm, A. U. and Heckhausen, Juliane and Burkert, Silke and Felber, Juliane and Schrader, M.}, title = {The interplay of autonomy goals and spousal support a prospective study with couples facing cancer}, series = {Psychology \& health : official journal of the European Health Psychology Society}, volume = {27}, booktitle = {Psychology \& health : official journal of the European Health Psychology Society}, number = {33}, publisher = {Routledge, Taylor \& Francis Group}, address = {Abingdon}, issn = {0887-0446}, pages = {70 -- 71}, year = {2012}, language = {en} } @article{Hennemann2012, author = {Hennemann, Anja}, title = {The interaction between the linguistic domains of evidentiality and deixis as exemplified by Spanish detective novels}, isbn = {978-3-89323-140-9}, year = {2012}, language = {en} } @article{KaiserEllerbrockWulfetal.2012, author = {Kaiser, M. and Ellerbrock, Ruth H. and Wulf, M. and Dultz, S. and Hierath, C. and Sommer, M.}, title = {The influence of mineral characteristics on organic matter content, composition, and stability of topsoils under long-term arable and forest land use}, series = {Journal of geophysical research : Biogeosciences}, volume = {117}, journal = {Journal of geophysical research : Biogeosciences}, number = {4}, publisher = {American Geophysical Union}, address = {Washington}, issn = {0148-0227}, doi = {10.1029/2011JG001712}, pages = {16}, year = {2012}, abstract = {In this study, we analyzed the influence of soil mineral characteristics (e. g., clay concentration and mineralogical composition, iron and aluminum oxide concentration and crystallinity, specific surface area, and exchangeable cation concentration) on (i) organic carbon (OC) content (kg m(-2)) and (ii) the concentration (g kg(-1)), composition, and stability of the mineral-associated organic matter (OM) of arable and forest topsoils. We selected seven soil types with different mineral characteristics for this study. For each soil type, samples were taken from topsoils of a deciduous forest and an adjacent arable site. The arable and forest sites have been used continuously for more than 100 years. Na-pyrophosphate soluble OM fractions (OM(PY)), representing mineral-associated OM, were extracted, analyzed for OC and C-14 concentrations, and characterized by FTIR spectroscopy. For the forest and arable topsoils, a linear relationship was found between the OC content and exchangeable Ca. For the arable topsoils (pH 6.7-7.5), correlation analyses indicated that the OCPY concentration increased with an increase in oxalate soluble Fe and Al, exchangeable Ca, and Na-pyrophosphate soluble Mg and Fe concentrations. The stability of OM(PY) determined by the C-14 measurements of the near-neutral arable topsoils was shown to increase with the specific surface area and the concentration of exchangeable Ca. For the acidic forest topsoils (pH < 5), the stability of OM(PY) was found to increase as the pH, and the concentration of C=O groups and Na-pyrophosphate soluble Mg increase.}, language = {en} } @article{HartmannTeraoGarattinietal.2012, author = {Hartmann, Tobias and Terao, Mineko and Garattini, Enrico and Teutloff, Christian and Alfaro, Joshua F. and Jones, Jeffrey P. and Leimk{\"u}hler, Silke}, title = {The impact of single nucleotide polymorphisms on human aldehyde oxidase}, series = {Drug metabolism and disposition : the biological fate of chemicals}, volume = {40}, journal = {Drug metabolism and disposition : the biological fate of chemicals}, number = {5}, publisher = {American Society for Pharmacology and Experimental Therapeutics}, address = {Bethesda}, issn = {0090-9556}, doi = {10.1124/dmd.111.043828}, pages = {856 -- 864}, year = {2012}, abstract = {Aldehyde oxidase (AO) is a complex molybdo-flavoprotein that belongs to the xanthine oxidase family. AO is active as a homodimer, and each 150-kDa monomer binds two distinct [2Fe2S] clusters, FAD, and the molybdenum cofactor. AO has an important role in the metabolism of drugs based on its broad substrate specificity oxidizing aromatic aza-heterocycles, for example, N-1-methylnicotinamide and N-methylphthalazinium, or aldehydes, such as benzaldehyde, retinal, and vanillin. Sequencing the 35 coding exons of the human AOX1 gene in a sample of 180 Italian individuals led to the identification of relatively frequent, synonymous, missense and nonsense single-nucleotide polymorphisms (SNPs). Human aldehyde oxidase (hAOX1) was purified after heterologous expression in Escherichia coli. The recombinant protein was obtained with a purity of 95\% and a yield of 50 mu g/l E. coli culture. Site-directed mutagenesis of the hAOX1 cDNA allowed the purification of protein variants bearing the amino acid changes R802C, R921H, N1135S, and H1297R, which correspond to some of the identified SNPs. The hAOX1 variants were purified and compared with the wild-type protein relative to activity, oligomerization state, and metal content. Our data show that the mutation of each amino acid residue has a variable impact on the ability of hAOX1 to metabolize selected substrates. Thus, the human population is characterized by the presence of functionally inactive hAOX1 allelic variants as well as variants encoding enzymes with different catalytic activities. Our results indicate that the presence of these allelic variants should be considered for the design of future drugs.}, language = {en} }