@phdthesis{Fronton2014,
  author    = {Fronton, Ludivine},
  title     = {Modeling approaches to characterize the disposition of monoclonal antibodies},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-76537},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xxi, 133},
  year      = {2014},
  abstract  = {Monoclonal antibodies (mAbs) are engineered immunoglobulins G (IgG) used for more than 20 years as targeted therapy in oncology, infectious diseases and (auto-)immune disorders. Their protein nature greatly influences their pharmacokinetics (PK), presenting typical linear and non-linear behaviors. While it is common to use empirical modeling to analyze clinical PK data of mAbs, there is neither clear consensus nor guidance to, on one hand, select the structure of classical compartment models and on the other hand, interpret mechanistically PK parameters. The mechanistic knowledge present in physiologically-based PK (PBPK) models is likely to support rational classical model selection and thus, a methodology to link empirical and PBPK models is desirable. However, published PBPK models for mAbs are quite diverse in respect to the physiology of distribution spaces and the parameterization of the non-specific elimination involving the neonatal Fc receptor (FcRn) and endogenous IgG (IgGendo). The remarkable discrepancy between the simplicity of biodistribution data and the complexity of published PBPK models translates in parameter identifiability issues. In this thesis, we address this problem with a simplified PBPK model—derived from a hierarchy of more detailed PBPK models and based on simplifications of tissue distribution model. With the novel tissue model, we are breaking new grounds in mechanistic modeling of mAbs disposition: We demonstrate that binding to FcRn is indeed linear and that it is not possible to infer which tissues are involved in the unspecific elimination of wild-type mAbs. We also provide a new approach to predict tissue partition coefficients based on mechanistic insights: We directly link tissue partition coefficients (Ktis) to data-driven and species-independent published antibody biodistribution coefficients (ABCtis) and thus, we ensure the extrapolation from pre-clinical species to human with the simplified PBPK model. We further extend the simplified PBPK model to account for a target, relevant to characterize the non-linear clearance due to mAb-target interaction. With model reduction techniques, we reduce the dimensionality of the simplified PBPK model to design 2-compartment models, thus guiding classical model development with physiological and mechanistic interpretation of the PK parameters. We finally derive a new scaling approach for anatomical and physiological parameters in PBPK models that translates the inter-individual variability into the design of mechanistic covariate models with direct link to classical compartment models, specially useful for PK population analysis during clinical development.},
  language  = {en}
}
@phdthesis{Fudickar2014,
  author    = {Fudickar, Sebastian},
  title     = {Sub Ghz transceiver for indoor localisation of smartphones},
  school      = {Universit{\"a}t Potsdam},
  pages     = {IV, 167},
  year      = {2014},
  language  = {en}
}
@phdthesis{Gassmoeller2014,
  author    = {Gaßm{\"o}ller, Ren{\´e}},
  title     = {The interaction of subducted slabs and plume generation zones in geodynamic models},
  school      = {Universit{\"a}t Potsdam},
  pages     = {158},
  year      = {2014},
  language  = {en}
}
@phdthesis{Gericke2014,
  author    = {Gericke, Lutz},
  title     = {Tele-Board - Supporting and analyzing creative collaboration in synchronous and asynchronous scenario},
  pages     = {186},
  year      = {2014},
  language  = {en}
}
@phdthesis{Gerlach2014,
  author    = {Gerlach, R{\"u}diger},
  title     = {Betriebliche Sozialpolitik im historischen Systemvergleich : das Volkswagenwerk und der VEB Sachsenring von den 1950er bis in die 1980er Jahre},
  series = {Vierteljahreschrift f{\"u}r Sozial- und Wirtschaftsgeschichte - Beihefte},
  volume    = {227},
  journal   = {Vierteljahreschrift f{\"u}r Sozial- und Wirtschaftsgeschichte - Beihefte},
  publisher = {Franz Steiner Verlag},
  address   = {Stuttgart},
  isbn      = {978-3-515-10664-1},
  pages     = {457 S.},
  year      = {2014},
  language  = {de}
}
@phdthesis{Gerngross2014,
  author    = {Gerngroß, Maik},
  title     = {Untersuchungen zur Herstellung por{\"o}ser Materialien durch Acetalisierungsreaktionen},
  pages     = {152},
  year      = {2014},
  language  = {de}
}
@phdthesis{Girbig2014,
  author    = {Girbig, Dorothee},
  title     = {Analysing concerted criteria for local dynamic properties of metabolic systems},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72017},
  school      = {Universit{\"a}t Potsdam},
  year      = {2014},
  abstract  = {Metabolic systems tend to exhibit steady states that can be measured in terms of their concentrations and fluxes. These measurements can be regarded as a phenotypic representation of all the complex interactions and regulatory mechanisms taking place in the underlying metabolic network. Such interactions determine the system's response to external perturbations and are responsible, for example, for its asymptotic stability or for oscillatory trajectories around the steady state. However, determining these perturbation responses in the absence of fully specified kinetic models remains an important challenge of computational systems biology. Structural kinetic modeling (SKM) is a framework to analyse whether a metabolic steady state remains stable under perturbation, without requiring detailed knowledge about individual rate equations. It provides a parameterised representation of the system's Jacobian matrix in which the model parameters encode information about the enzyme-metabolite interactions. Stability criteria can be derived by generating a large number of structural kinetic models (SK-models) with randomly sampled parameter sets and evaluating the resulting Jacobian matrices. The parameter space can be analysed statistically in order to detect network positions that contribute significantly to the perturbation response. Because the sampled parameters are equivalent to the elasticities used in metabolic control analysis (MCA), the results are easy to interpret biologically. In this project, the SKM framework was extended by several novel methodological improvements. These improvements were evaluated in a simulation study using a set of small example pathways with simple Michaelis Menten rate laws. Afterwards, a detailed analysis of the dynamic properties of the neuronal TCA cycle was performed in order to demonstrate how the new insights obtained in this work could be used for the study of complex metabolic systems. The first improvement was achieved by examining the biological feasibility of the elasticity combinations created during Monte Carlo sampling. Using a set of small example systems, the findings showed that the majority of sampled SK-models would yield negative kinetic parameters if they were translated back into kinetic models. To overcome this problem, a simple criterion was formulated that mitigates such infeasible models and the application of this criterion changed the conclusions of the SKM experiment. The second improvement of this work was the application of supervised machine-learning approaches in order to analyse SKM experiments. So far, SKM experiments have focused on the detection of individual enzymes to identify single reactions important for maintaining the stability or oscillatory trajectories. In this work, this approach was extended by demonstrating how SKM enables the detection of ensembles of enzymes or metabolites that act together in an orchestrated manner to coordinate the pathways response to perturbations. In doing so, stable and unstable states served as class labels, and classifiers were trained to detect elasticity regions associated with stability and instability. Classification was performed using decision trees and relevance vector machines (RVMs). The decision trees produced good classification accuracy in terms of model bias and generalizability. RVMs outperformed decision trees when applied to small models, but encountered severe problems when applied to larger systems because of their high runtime requirements. The decision tree rulesets were analysed statistically and individually in order to explore the role of individual enzymes or metabolites in controlling the system's trajectories around steady states. The third improvement of this work was the establishment of a relationship between the SKM framework and the related field of MCA. In particular, it was shown how the sampled elasticities could be converted to flux control coefficients, which were then investigated for their predictive information content in classifier training. After evaluation on the small example pathways, the methodology was used to study two steady states of the neuronal TCA cycle with respect to their intrinsic mechanisms responsible for stability or instability. The findings showed that several elasticities were jointly coordinated to control stability and that the main source for potential instabilities were mutations in the enzyme alpha-ketoglutarate dehydrogenase.},
  language  = {en}
}
@phdthesis{Goldbeck2014,
  author    = {Goldbeck, Johanna},
  title     = {Volksaufkl{\"a}rerische Schulreform auf dem Lande in einer ihren Verflechtungen : das Besucherverzeichnis der Reckahner Musterschule Friedrich Eberhard von Rochows als Schl{\"u}sselquelle f{\"u}r europaweite Netzwerke im Zeitalter der Aufkl{\"a}rung},
  series = {Philanthropismus und popul{\"a}re Aufkl{\"a}rung Studien und Dokumente},
  volume    = {7},
  journal   = {Philanthropismus und popul{\"a}re Aufkl{\"a}rung Studien und Dokumente},
  publisher = {Ed. Lumi{\`e}re},
  address   = {Bremen},
  isbn      = {978-3-943245-19-6},
  pages     = {378 S.},
  year      = {2014},
  language  = {de}
}
@phdthesis{Goldshteyn2014,
  author    = {Goldshteyn, Jewgenij},
  title     = {Frequency-resolved ultrafast dynamics of phonon polariton wavepackets in the ferroelectric crystals LiNbO₃ and LiTaO₃},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-71623},
  school      = {Universit{\"a}t Potsdam},
  year      = {2014},
  abstract  = {During this work I built a four wave mixing setup for the time-resolved femtosecond spectroscopy of Raman-active lattice modes. This setup enables to study the selective excitation of phonon polaritons. These quasi-particles arise from the coupling of electro-magnetic waves and transverse optical lattice modes, the so-called phonons. The phonon polaritons were investigated in the optically non-linear, ferroelectric crystals LiNbO₃ and LiTaO₃. The direct observation of the frequency shift of the scattered narrow bandwidth probe pulses proofs the role of the Raman interaction during the probe and excitation process of phonon polaritons. I compare this experimental method with the measurement where ultra-short laser pulses are used. The frequency shift remains obscured by the relative broad bandwidth of these laser pulses. In an experiment with narrow bandwidth probe pulses, the Stokes and anti-Stokes intensities are spectrally separated. They are assigned to the corresponding counter-propagating wavepackets of phonon polaritons. Thus, the dynamics of these wavepackets was separately studied. Based on these findings, I develop the mathematical description of the so-called homodyne detection of light for the case of light scattering from counter propagating phonon polaritons. Further, I modified the broad bandwidth of the ultra-short pump pulses using bandpass filters to generate two pump pulses with non-overlapping spectra. This enables the frequency-selective excitation of polariton modes in the sample, which allows me to observe even very weak polariton modes in LiNbO₃ or LiTaO₃ that belong to the higher branches of the dispersion relation of phonon polaritons. The experimentally determined dispersion relation of the phonon polaritons could therefore be extended and compared to theoretical models. In addition, I determined the frequency-dependent damping of phonon polaritons.},
  language  = {en}
}
@phdthesis{Goswami2014,
  author    = {Goswami, Bedartha},
  title     = {Uncertainties in climate data analysis},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-78312},
  school      = {Universit{\"a}t Potsdam},
  year      = {2014},
  abstract  = {Scientific inquiry requires that we formulate not only what we know, but also what we do not know and by how much. In climate data analysis, this involves an accurate specification of measured quantities and a consequent analysis that consciously propagates the measurement errors at each step. The dissertation presents a thorough analytical method to quantify errors of measurement inherent in paleoclimate data. An additional focus are the uncertainties in assessing the coupling between different factors that influence the global mean temperature (GMT). Paleoclimate studies critically rely on `proxy variables' that record climatic signals in natural archives. However, such proxy records inherently involve uncertainties in determining the age of the signal. We present a generic Bayesian approach to analytically determine the proxy record along with its associated uncertainty, resulting in a time-ordered sequence of correlated probability distributions rather than a precise time series. We further develop a recurrence based method to detect dynamical events from the proxy probability distributions. The methods are validated with synthetic examples and demonstrated with real-world proxy records. The proxy estimation step reveals the interrelations between proxy variability and uncertainty. The recurrence analysis of the East Asian Summer Monsoon during the last 9000 years confirms the well-known `dry' events at 8200 and 4400 BP, plus an additional significantly dry event at 6900 BP. We also analyze the network of dependencies surrounding GMT. We find an intricate, directed network with multiple links between the different factors at multiple time delays. We further uncover a significant feedback from the GMT to the El Ni{\~n}o Southern Oscillation at quasi-biennial timescales. The analysis highlights the need of a more nuanced formulation of influences between different climatic factors, as well as the limitations in trying to estimate such dependencies.},
  language  = {en}
}
@phdthesis{Grigoli2014,
  author    = {Grigoli, Francesco},
  title     = {Automated seismic event location by waveform coherence analysis},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70329},
  school      = {Universit{\"a}t Potsdam},
  year      = {2014},
  abstract  = {Automated location of seismic events is a very important task in microseismic monitoring operations as well for local and regional seismic monitoring. Since microseismic records are generally characterised by low signal-to-noise ratio, such methods are requested to be noise robust and sufficiently accurate. Most of the standard automated location routines are based on the automated picking, identification and association of the first arrivals of P and S waves and on the minimization of the residuals between theoretical and observed arrival times of the considered seismic phases. Although current methods can accurately pick P onsets, the automatic picking of the S onset is still problematic, especially when the P coda overlaps the S wave onset. In this thesis I developed a picking free automated method based on the Short-Term-Average/Long-Term-Average (STA/LTA) traces at different stations as observed data. I used the STA/LTA of several characteristic functions in order to increase the sensitiveness to the P wave and the S waves. For the P phases we use the STA/LTA traces of the vertical energy function, while for the S phases, we use the STA/LTA traces of the horizontal energy trace and then a more optimized characteristic function which is obtained using the principal component analysis technique. The orientation of the horizontal components can be retrieved by robust and linear approach of waveform comparison between stations within a network using seismic sources outside the network (chapter 2). To locate the seismic event, we scan the space of possible hypocentral locations and origin times, and stack the STA/LTA traces along the theoretical arrival time surface for both P and S phases. Iterating this procedure on a three-dimensional grid we retrieve a multidimensional matrix whose absolute maximum corresponds to the spatial and temporal coordinates of the seismic event. Location uncertainties are then estimated by perturbing the STA/LTA parameters (i.e the length of both long and short time windows) and relocating each event several times. In order to test the location method I firstly applied it to a set of 200 synthetic events. Then we applied it to two different real datasets. A first one related to mining induced microseismicity in a coal mine in the northern Germany (chapter 3). In this case we successfully located 391 microseismic event with magnitude range between 0.5 and 2.0 Ml. To further validate the location method I compared the retrieved locations with those obtained by manual picking procedure. The second dataset consist in a pilot application performed in the Campania-Lucania region (southern Italy) using a 33 stations seismic network (Irpinia Seismic Network) with an aperture of about 150 km (chapter 4). We located 196 crustal earthquakes (depth < 20 km) with magnitude range 1.1 < Ml < 2.7. A subset of these locations were compared with accurate locations retrieved by a manual location procedure based on the use of a double difference technique. In both cases results indicate good agreement with manual locations. Moreover, the waveform stacking location method results noise robust and performs better than classical location methods based on the automatic picking of the P and S waves first arrivals.},
  language  = {en}
}
@phdthesis{Grothaus2014,
  author    = {Grothaus, Christian J.},
  title     = {Baukunst als unm{\"o}gliche M{\"o}glichkeit : Pl{\"a}doyer f{\"u}r eine unbestimmte Architektur},
  publisher = {transcript Verlag},
  address   = {Bielefeld},
  isbn      = {978-3-8376-2631-5},
  pages     = {318 S.},
  year      = {2014},
  language  = {de}
}
@phdthesis{Gurman2014,
  author    = {Gurman, Avraham I.},
  title     = {איסור נישואי "מעוברת חברו ומנקת חברו" במשפט העברי},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-77081},
  school      = {Universit{\"a}t Potsdam},
  pages     = {XIX, 343, P},
  year      = {2014},
  abstract  = {The Period of the Sages 1. The stringent approach in the early halakhah: we assume that a pregnant or nursing widow was forbidden to remarry because such a marriage would be considered trespassing on the domain of her late husband. This prohibition was perceived as quite severe since it stemmed from biblical verses. 2. The lenient approach: A different rationale was given for the prohibition, and significant exceptions were made to the prohibition. Furthermore, many rabbinic scholars maintained that the prohibition's duration should be less than twenty-four months. 3. Choosing stringency with the closing of the Talmud: At the end of the amoraic period, or, perhaps, even in the saboraic period, the rabbis decided to adopt the more stringent positions pertaining to the marital prohibition. They ruled that there were to be no exceptions to the law, except if the child died. Likewise, the rabbis ruled that the duration of the waiting period would be twenty-four months from the birth of the child. The Geonic period 4. In the Geonic period differences of opinion between the Babylonian Jews and the Jews living in the Land of Israel were preserved. These differences had their roots in sources in the Babylonian and Jerusalem Talmuds, respectively. Ultimately, the Babylonian Geonim ensured that the Babylonian Talmud's approach became the consensus opinion among the rabbinic decisors. The Period of the Rishonim (Early Authorities) 5. Broadening the scope of the prohibition: In the period of the Early Authorities, the rabbis decided that the prohibition also applied to divorcees who had children from their previous marriages and to single women who had children out of wedlock. These rulings greatly expanded the scope of the prohibition. 6. Exceptions to the prohibition - the case of R. Jacob ha-Kohen of Cracow and its impact on the Spanish sages: R. Jacob of Cracow believed that exceptions could be made to the prohibition. By hiring a wet nurse for the child and creating a mechanism that would prevent her from breaking her commitment, the mother could remarry. This position was vehemently rejected by the sages of Ashkenaz, but Spanish sages seemed to have accepted it. When R. Asher b. Yehiel (Rosh) fled to Spain, he revolutionized the Spanish approach, leading the Spanish sages to adopt the stringent approach that originated in Ashkenaz. The Modern period 7. In the Modern period, with the shortening of the average nursing period, the rabbinic decisors faced a dilemma: on the one hand the classical halakhic literature adopted a stringent approach to the prohibition, but on the other hand, the rationale to the prohibition almost disappeared. The Halakhah reacted to this new reality by adopting two contradictory approaches: the stringent one and the lenient one. 8. The stringent approach fashioned by the Chatam Sofer: The Chatam Sofer and his disciples were only willing to annul the prohibition if forbidding the marriage was likely to cause the child to ultimately forsake religion. The Chatam Sofer's stringent approach was influenced by the fact that one of the early religious reformers, R. Aharon Churin argued that the marital ban should be abrogated. In order to strengthen the prohibition's legitimacy, Sofer's student, the Maharam Schik, argued that the prohibition was biblically mandated and he suggested a new rational to the prohibition. 9. The lenient approach: This approach is the product of a number of lenient rulings issued by various rabbinic decisors. These leniencies reflect the tremendous openness of the text to interpretation. Sources that had been interpreted stringently for hundreds of years were suddenly interpreted in a far more lenient fashion. We presume that the change in interpretation was a result of the change of the surrounding environment. 10. The Chatam Sofer's school's stringent opinion influenced the lenient rabbinic decisors too, vitiating their willingness to cross certain boundaries. Thus, the lenient decisors were willing to adopt lenient interpretations to the ancient sources, but they were not usually willing to recognize the need for a dramatic change in the law's status in light of the changing reality.},
  language  = {mul}
}
@phdthesis{GuzmanPerez2014,
  author    = {Guzman-Perez, Valentina},
  title     = {Effect of benzylglucosinolate on signaling pathways associated with type 2 diabetes prevention},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72351},
  school      = {Universit{\"a}t Potsdam},
  year      = {2014},
  abstract  = {Type 2 diabetes (T2D) is a health problem throughout the world. In 2010, there were nearly 230 million individuals with diabetes worldwide and it is estimated that in the economically advanced countries the cases will increase about 50\% in the next twenty years. Insulin resistance is one of major features in T2D, which is also a risk factor for metabolic and cardiovascular complications. Epidemiological and animal studies have shown that the consumption of vegetables and fruits can delay or prevent the development of the disease, although the underlying mechanisms of these effects are still unclear. Brassica species such as broccoli (Brassica oleracea var. italica) and nasturtium (Tropaeolum majus) possess high content of bioactive phytochemicals, e.g. nitrogen sulfur compounds (glucosinolates and isothiocyanates) and polyphenols largely associated with the prevention of cancer. Isothiocyanates (ITCs) display their anti-carcinogenic potential by inducing detoxicating phase II enzymes and increasing glutathione (GSH) levels in tissues. In T2D diabetes an increase in gluconeogenesis and triglyceride synthesis, and a reduction in fatty acid oxidation accompanied by the presence of reactive oxygen species (ROS) are observed; altogether is the result of an inappropriate response to insulin. Forkhead box O (FOXO) transcription factors play a crucial role in the regulation of insulin effects on gene expression and metabolism, and alterations in FOXO function could contribute to metabolic disorders in diabetes. In this study using stably transfected human osteosarcoma cells (U-2 OS) with constitutive expression of FOXO1 protein labeled with GFP (green fluorescent protein) and human hepatoma cells HepG2 cell cultures, the ability of benzylisothiocyanate (BITC) deriving from benzylglucosinolate, extracted from nasturtium to modulate, i) the insulin-signaling pathway, ii) the intracellular localization of FOXO1 and iii) the expression of proteins involved in glucose metabolism, ROS detoxification, cell cycle arrest and DNA repair was evaluated. BITC promoted oxidative stress and in response to that induced FOXO1 translocation from cytoplasm into the nucleus antagonizing the insulin effect. BITC stimulus was able to down-regulate gluconeogenic enzymes, which can be considered as an anti-diabetic effect; to promote antioxidant resistance expressed by the up-regulation in manganese superoxide dismutase (MnSOD) and detoxification enzymes; to modulate autophagy by induction of BECLIN1 and down-regulation of the mammalian target of rapamycin complex 1 (mTORC1) pathway; and to promote cell cycle arrest and DNA damage repair by up-regulation of the cyclin-dependent kinase inhibitor (p21CIP) and Growth Arrest / DNA Damage Repair (GADD45). Except for the nuclear factor (erythroid derived)-like2 (NRF2) and its influence in the detoxification enzymes gene expression, all the observed effects were independent from FOXO1, protein kinase B (AKT/PKB) and NAD-dependent deacetylase sirtuin-1 (SIRT1). The current study provides evidence that besides of the anticarcinogenic potential, isothiocyanates might have a role in T2D prevention. BITC stimulus mimics the fasting state, in which insulin signaling is not triggered and FOXO proteins remain in the nucleus modulating gene expression of their target genes, with the advantage of a down-regulation of gluconeogenesis instead of its increase. These effects suggest that BITC might be considered as a promising substance in the prevention or treatment of T2D, therefore the factors behind of its modulatory effects need further investigation.},
  language  = {en}
}
@phdthesis{Hebig2014,
  author    = {Hebig, Regina},
  title     = {Evolution of model-driven engineering settings in practice},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70761},
  school      = {Universit{\"a}t Potsdam},
  year      = {2014},
  abstract  = {Nowadays, software systems are getting more and more complex. To tackle this challenge most diverse techniques, such as design patterns, service oriented architectures (SOA), software development processes, and model-driven engineering (MDE), are used to improve productivity, while time to market and quality of the products stay stable. Multiple of these techniques are used in parallel to profit from their benefits. While the use of sophisticated software development processes is standard, today, MDE is just adopted in practice. However, research has shown that the application of MDE is not always successful. It is not fully understood when advantages of MDE can be used and to what degree MDE can also be disadvantageous for productivity. Further, when combining different techniques that aim to affect the same factor (e.g. productivity) the question arises whether these techniques really complement each other or, in contrast, compensate their effects. Due to that, there is the concrete question how MDE and other techniques, such as software development process, are interrelated. Both aspects (advantages and disadvantages for productivity as well as the interrelation to other techniques) need to be understood to identify risks relating to the productivity impact of MDE. Before studying MDE's impact on productivity, it is necessary to investigate the range of validity that can be reached for the results. This includes two questions. First, there is the question whether MDE's impact on productivity is similar for all approaches of adopting MDE in practice. Second, there is the question whether MDE's impact on productivity for an approach of using MDE in practice remains stable over time. The answers for both questions are crucial for handling risks of MDE, but also for the design of future studies on MDE success. This thesis addresses these questions with the goal to support adoption of MDE in future. To enable a differentiated discussion about MDE, the term MDE setting'' is introduced. MDE setting refers to the applied technical setting, i.e. the employed manual and automated activities, artifacts, languages, and tools. An MDE setting's possible impact on productivity is studied with a focus on changeability and the interrelation to software development processes. This is done by introducing a taxonomy of changeability concerns that might be affected by an MDE setting. Further, three MDE traits are identified and it is studied for which manifestations of these MDE traits software development processes are impacted. To enable the assessment and evaluation of an MDE setting's impacts, the Software Manufacture Model language is introduced. This is a process modeling language that allows to reason about how relations between (modeling) artifacts (e.g. models or code files) change during application of manual or automated development activities. On that basis, risk analysis techniques are provided. These techniques allow identifying changeability risks and assessing the manifestations of the MDE traits (and with it an MDE setting's impact on software development processes). To address the range of validity, MDE settings from practice and their evolution histories were capture in context of this thesis. First, this data is used to show that MDE settings cover the whole spectrum concerning their impact on changeability or interrelation to software development processes. Neither it is seldom that MDE settings are neutral for processes nor is it seldom that MDE settings have impact on processes. Similarly, the impact on changeability differs relevantly. Second, a taxonomy of evolution of MDE settings is introduced. In that context it is discussed to what extent different types of changes on an MDE setting can influence this MDE setting's impact on changeability and the interrelation to processes. The category of structural evolution, which can change these characteristics of an MDE setting, is identified. The captured MDE settings from practice are used to show that structural evolution exists and is common. In addition, some examples of structural evolution steps are collected that actually led to a change in the characteristics of the respective MDE settings. Two implications are: First, the assessed diversity of MDE settings evaluates the need for the analysis techniques that shall be presented in this thesis. Second, evolution is one explanation for the diversity of MDE settings in practice. To summarize, this thesis studies the nature and evolution of MDE settings in practice. As a result support for the adoption of MDE settings is provided in form of techniques for the identification of risks relating to productivity impacts.},
  language  = {en}
}
@phdthesis{Heise2014,
  author    = {Heise, Arvid},
  title     = {Data cleansing and integration operators for a parallel data analytics platform},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-77100},
  school      = {Universit{\"a}t Potsdam},
  pages     = {ii, 179},
  year      = {2014},
  abstract  = {The data quality of real-world datasets need to be constantly monitored and maintained to allow organizations and individuals to reliably use their data. Especially, data integration projects suffer from poor initial data quality and as a consequence consume more effort and money. Commercial products and research prototypes for data cleansing and integration help users to improve the quality of individual and combined datasets. They can be divided into either standalone systems or database management system (DBMS) extensions. On the one hand, standalone systems do not interact well with DBMS and require time-consuming data imports and exports. On the other hand, DBMS extensions are often limited by the underlying system and do not cover the full set of data cleansing and integration tasks. We overcome both limitations by implementing a concise set of five data cleansing and integration operators on the parallel data analytics platform Stratosphere. We define the semantics of the operators, present their parallel implementation, and devise optimization techniques for individual operators and combinations thereof. Users specify declarative queries in our query language METEOR with our new operators to improve the data quality of individual datasets or integrate them to larger datasets. By integrating the data cleansing operators into the higher level language layer of Stratosphere, users can easily combine cleansing operators with operators from other domains, such as information extraction, to complex data flows. Through a generic description of the operators, the Stratosphere optimizer reorders operators even from different domains to find better query plans. As a case study, we reimplemented a part of the large Open Government Data integration project GovWILD with our new operators and show that our queries run significantly faster than the original GovWILD queries, which rely on relational operators. Evaluation reveals that our operators exhibit good scalability on up to 100 cores, so that even larger inputs can be efficiently processed by scaling out to more machines. Finally, our scripts are considerably shorter than the original GovWILD scripts, which results in better maintainability of the scripts.},
  language  = {en}
}
@phdthesis{Heise2014,
  author    = {Heise, Robert},
  title     = {Estimation of photosynthetic carbon fluxes in intact plants},
  publisher = {Universit{\"a}tsverlag Potsdam},
  address   = {Potsdam},
  school      = {Universit{\"a}t Potsdam},
  pages     = {178},
  year      = {2014},
  language  = {en}
}
@phdthesis{Herenz2014,
  author    = {Herenz, Peter},
  title     = {A study of the absorption characteristics of gaseous galaxy halos in the local Universe},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70513},
  school      = {Universit{\"a}t Potsdam},
  year      = {2014},
  abstract  = {Today, it is well known that galaxies like the Milky Way consist not only of stars but also of gas and dust. The galactic halo, a sphere of gas that surrounds the stellar disk of a galaxy, is especially interesting. It provides a wealth of information about in and outflowing gaseous material towards and away from galaxies and their hierarchical evolution. For the Milky Way, the so-called high-velocity clouds (HVCs), fast moving neutral gas complexes in the halo that can be traced by absorption-line measurements, are believed to play a crucial role in the overall matter cycle in our Galaxy. Over the last decades, the properties of these halo structures and their connection to the local circumgalactic and intergalactic medium (CGM and IGM, respectively) have been investigated in great detail by many different groups. So far it remains unclear, however, to what extent the results of these studies can be transferred to other galaxies in the local Universe. In this thesis, we study the absorption properties of Galactic HVCs and compare the HVC absorption characteristics with those of intervening QSO absorption-line systems at low redshift. The goal of this project is to improve our understanding of the spatial extent and physical conditions of gaseous galaxy halos in the local Universe. In the first part of the thesis we use HST /STIS ultraviolet spectra of more than 40 extragalactic background sources to statistically analyze the absorption properties of the HVCs in the Galactic halo. We determine fundamental absorption line parameters including covering fractions of different weakly/intermediately/highly ionized metals with a particular focus on SiII and MgII. Due to the similarity in the ionization properties of SiII and MgII, we are able to estimate the contribution of HVC-like halo structures to the cross section of intervening strong MgII absorbers at z = 0. Our study implies that only the most massive HVCs would be regarded as strong MgII absorbers, if the Milky Way halo would be seen as a QSO absorption line system from an exterior vantage point. Combining the observed absorption-cross section of Galactic HVCs with the well-known number density of intervening strong MgII absorbers at z = 0, we conclude that the contribution of infalling gas clouds (i.e., HVC analogs) in the halos of Milky Way-type galaxies to the cross section of strong MgII absorbers is 34\%. This result indicates that only about one third of the strong MgII absorption can be associated with HVC analogs around other galaxies, while the majority of the strong MgII systems possibly is related to galaxy outflows and winds. The second part of this thesis focuses on the properties of intervening metal absorbers at low redshift. The analysis of the frequency and physical conditions of intervening metal systems in QSO spectra and their relation to nearby galaxies offers new insights into the typical conditions of gaseous galaxy halos. One major aspect in our study was to regard intervening metal systems as possible HVC analogs. We perform a detailed analysis of absorption line properties and line statistics for 57 metal absorbers along 78 QSO sightlines using newly-obtained ultraviolet spectra obtained with HST /COS. We find clear evidence for bimodal distribution in the HI column density in the absorbers, a trend that we interpret as sign for two different classes of absorption systems (with HVC analogs at the high-column density end). With the help of the strong transitions of SiII λ1260, SiIII λ1206, and CIII λ977 we have set up Cloudy photoionization models to estimate the local ionization conditions, gas densities, and metallicities. We find that the intervening absorption systems studied by us have, on average, similar physical conditions as Galactic HVC absorbers, providing evidence that many of them represent HVC analogs in the vicinity of other galaxies. We therefore determine typical halo sizes for SiII, SiIII, and CIII for L = 0.01L∗ and L = 0.05L∗ galaxies. Based on the covering fractions of the different ions in the Galactic halo, we find that, for example, the typical halo size for SiIII is ∼ 160 kpc for L = 0.05L∗ galaxies. We test the plausibility of this result by searching for known galaxies close to the QSO sightlines and at similar redshifts as the absorbers. We find that more than 34\% of the measured SiIII absorbers have galaxies associated with them, with the majority of the absorbers indeed being at impact parameters ρ ≤160 kpc.},
  language  = {en}
}
@phdthesis{Hermawan2014,
  author    = {Hermawan, Romy},
  title     = {Coordination and civil service reform in Indonesia (1999-2009)},
  publisher = {Center of South South Cooperation Studies, Univ.},
  address   = {Brawijaya},
  isbn      = {978-602-284-061-9},
  pages     = {XVIII, 236 S. : graph. Darst.},
  year      = {2014},
  abstract  = {The background of civil service reform in Indonesia reveals the emergence of the reformation movement in 1998, following the fall of the authoritarian New Order regime. The reformation movement has seen the introduction of reforms in Indonesia's various governmental institutions, including the civil service. The civil service reforms were marked by the revision of Act 8/ 74 with Act 43 of 1999 on Civil Service Administration. The implementation of the civil service reform program, which was carried out by both central and local governments, required cooperation between the actors (in particular, Ministries, agencies and local governments), known as coordination. Currently, the coordination that occurs between actors tends to be rigid and hierarchical. As a result, targets are not efficiently and effectively met. Hierarchical coordination, without a strong public sector infrastructure, tends to have a negative impact on achieving the desired outcomes of the civil service reform program. As an intrinsic part of the New Order regime, hierarchical coordination resulted in inefficiency and lack of efficacy. Despite these inefficiencies, the administration and the political environment have changed significantly as a result of the reform process. Obvious examples of the reforms are changes in recruitment patterns, placement and remuneration policies. However, in the case of Indonesia, it appears that every state institution has its own policy. Thus, it appears that there has not been policy coherence in the civil service reform program, resulting in the lack of a sustainable program. The important thing to examine is how the coordination mechanisms of the civil service reform program in the central government have developed during the reform era in Indonesia The purpose of this study is to analyse the linkages between coordination mechanisms and the actual implementation of civil service reform programs. This is undertaken as a basis for intervention based on the structures and patterns of coordination mechanisms in the implementation of civil service reform programs. The next step is to formulate the development coordination mechanisms, particularly to create structures and patterns of civil service reforms which are more sustainable to the specific characteristics of public sector organisations in Indonesia. The benefits of this research are a stronger understanding of the linkages between the mechanisms of coordination and implementation of civil service reform programs. Through this analysis, the findings can then be applied as a basic consideration in planning a sustainable civil service reform program. In the basis of theoretical issues concerning the linkages between coordination mechanisms and implementation of civil service reform program sustainability, this book explores the type of coordination, which is needed to test the proportional and sustainable concept of the intended civil service reform program in Indonesia. Research conducted through studies, surveys and donors has shown that poor coordination is the major hindrance to the civil service program reform in Indonesia. This research employs a qualitative approach. In this study, the coordination mechanisms and implementations of civil service reform programs are demonstrated by means of case studies of the State Ministry for Administrative Reform, the National Civil Service Agency and the National Public Administration Institute. The coordination mechanisms in these Ministries and agencies were analysed using indicators of effective and efficient coordination. The analysis of the coordination mechanisms shows a tendency towards rigid hierarchical coordination. This raises concerns about fragmentation among departments and agencies at the central government level and calls for integrated civil service reform both at central and local governmental levels. In the context of implementation programs, a hierarchical mechanism of coordination leverages on various aspects, such as the program formulation, implementation flow of the program, the impact of policies, and achievement targets. In particular, there was a shift process of the mainstream civil service reform in the Ministries and agencies which are marked by the emergence of sectoral interest and inefficiencies in the civil service reform program. The primary result of successful civil service reform is increased professionalism in the civil service. The findings on hierarchical mechanisms and the prescriptions which will follow show that the professionalism of Indonesia's civil service is at stake. The implementation of the program through coordination mechanisms in Ministries and agencies is measured in various dimensions: the centre of coordination, integration of coordination, sustainability of coordination and multidimensionality of coordination. The results of this analysis show that coordination mechanisms and the implementation of civil service reform are more successful when they are integration rather than hierarchical mechanisms. For a successful implementation of the reform program, it is crucial to intervene and change the type of coordination at the central government through the integration approach (hierarchy, market, and network). Furthermore, in order to move towards the integration type mechanism of coordination the separation of the administration and politics in the practice of good governance needs to be carried out immediately and simultaneously. Based on this analysis, it can be concluded that the integration type mechanism of coordination is a suitable for Indonesia for a sustainable civil service reform program. Finally, to achieve coherent civil service reforms, national policies developed according to the central government's priorities are indispensable, establishing a coordination mechanism that can be adhered to throughout all reform sectors.},
  language  = {en}
}
@phdthesis{Hewing2014,
  author    = {Hewing, Martin},
  title     = {Collaboration with potential users for discontinuous innovation : eperimental research on user creativity},
  publisher = {Springer Gabler},
  address   = {Wiesbaden},
  isbn      = {978-3-658-03752-9},
  pages     = {173 S.},
  year      = {2014},
  language  = {en}
}
@phdthesis{Hissler2014,
  author    = {Hißler, Carl-Martin},
  title     = {Zwischen Liberalismus und Christentum : die sozialethischen Aspekte der sozialen Marktwirtschaft},
  series = {Region - Nation - Europa},
  volume    = {74},
  journal   = {Region - Nation - Europa},
  publisher = {LIT-Verl.},
  address   = {Berlin},
  isbn      = {978-3-643-12616-0},
  pages     = {356 S.},
  year      = {2014},
  language  = {de}
}
@phdthesis{Holler2014,
  author    = {Holler, Markus},
  title     = {Photon reconstruction for the H.E.S.S. 28 m telescope and analysis of Crab Nebula and galactic centre observations},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72099},
  school      = {Universit{\"a}t Potsdam},
  year      = {2014},
  abstract  = {In the presented thesis, the most advanced photon reconstruction technique of ground-based γ-ray astronomy is adapted to the H.E.S.S. 28 m telescope. The method is based on a semi-analytical model of electromagnetic particle showers in the atmosphere. The properties of cosmic γ-rays are reconstructed by comparing the camera image of the telescope with the Cherenkov emission that is expected from the shower model. To suppress the dominant background from charged cosmic rays, events are selected based on several criteria. The performance of the analysis is evaluated with simulated events. The method is then applied to two sources that are known to emit γ-rays. The first of these is the Crab Nebula, the standard candle of ground-based γ-ray astronomy. The results of this source confirm the expected performance of the reconstruction method, where the much lower energy threshold compared to H.E.S.S. I is of particular importance. A second analysis is performed on the region around the Galactic Centre. The analysis results emphasise the capabilities of the new telescope to measure γ-rays in an energy range that is interesting for both theoretical and experimental astrophysics. The presented analysis features the lowest energy threshold that has ever been reached in ground-based γ-ray astronomy, opening a new window to the precise measurement of the physical properties of time-variable sources at energies of several tens of GeV.},
  language  = {en}
}
@phdthesis{Hutter2014,
  author    = {Hutter, Anne},
  title     = {Unveiling the epoch of reionization by simulations and high-redshift galaxies},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-76998},
  school      = {Universit{\"a}t Potsdam},
  pages     = {vi, 155},
  year      = {2014},
  abstract  = {The Epoch of Reionization marks after recombination the second major change in the ionization state of the universe, going from a neutral to an ionized state. It starts with the appearance of the first stars and galaxies; a fraction of high-energy photons emitted from galaxies permeate into the intergalactic medium (IGM) and gradually ionize the hydrogen, until the IGM is completely ionized at z~6 (Fan et al., 2006). While the progress of reionization is driven by galaxy evolution, it changes the ionization and thermal state of the IGM substantially and affects subsequent structure and galaxy formation by various feedback mechanisms. Understanding this interaction between reionization and galaxy formation is further impeded by a lack of understanding of the high-redshift galactic properties such as the dust distribution and the escape fraction of ionizing photons. Lyman Alpha Emitters (LAEs) represent a sample of high-redshift galaxies that are sensitive to all these galactic properties and the effects of reionization. In this thesis we aim to understand the progress of reionization by performing cosmological simulations, which allows us to investigate the limits of constraining reionization by high-redshift galaxies as LAEs, and examine how galactic properties and the ionization state of the IGM affect the visibility and observed quantities of LAEs and Lyman Break galaxies (LBGs). In the first part of this thesis we focus on performing radiative transfer calculations to simulate reionization. We have developed a mapping-sphere-scheme, which, starting from spherically averaged temperature and density fields, uses our 1D radiative transfer code and computes the effect of each source on the IGM temperature and ionization (HII, HeII, HeIII) profiles, which are subsequently mapped onto a grid. Furthermore we have updated the 3D Monte-Carlo radiative transfer pCRASH, enabling detailed reionization simulations which take individual source characteristics into account. In the second part of this thesis we perform a reionization simulation by post-processing a smoothed-particle hydrodynamical (SPH) simulation (GADGET-2) with 3D radiative transfer (pCRASH), where the ionizing sources are modelled according to the characteristics of the stellar populations in the hydrodynamical simulation. Following the ionization fractions of hydrogen (HI) and helium (HeII, HeIII), and temperature in our simulation, we find that reionization starts at z~11 and ends at z~6, and high density regions near sources are ionized earlier than low density regions far from sources. In the third part of this thesis we couple the cosmological SPH simulation and the radiative transfer simulations with a physically motivated, self-consistent model for LAEs, in order to understand the importance of the ionization state of the IGM, the escape fraction of ionizing photons from galaxies and dust in the interstellar medium (ISM) on the visibility of LAEs. Comparison of our models results with the LAE Lyman Alpha (Lya) and UV luminosity functions at z~6.6 reveals a three-dimensional degeneracy between the ionization state of the IGM, the ionizing photons escape fraction and the ISM dust distribution, which implies that LAEs act not only as tracers of reionization but also of the ionizing photon escape fraction and of the ISM dust distribution. This degeneracy does not even break down when we compare simulated with observed clustering of LAEs at z~6.6. However, our results show that reionization has the largest impact on the amplitude of the LAE angular correlation functions, and its imprints are clearly distinguishable from those of properties on galactic scales. These results show that reionization cannot be constrained tightly by exclusively using LAE observations. Further observational constraints, e.g. tomographies of the redshifted hydrogen 21cm line, are required. In addition we also use our LAE model to probe the question when a galaxy is visible as a LAE or a LBG. Within our model galaxies above a critical stellar mass can produce enough luminosity to be visible as a LBG and/or a LAE. By finding an increasing duty cycle of LBGs with Lya emission as the UV magnitude or stellar mass of the galaxy rises, our model reveals that the brightest (and most massive) LBGs most often show Lya emission. Predicting the Lya equivalent width (Lya EW) distribution and the fraction of LBGs showing Lya emission at z~6.6, we reproduce the observational trend of the Lya EWs with UV magnitude. However, the Lya EWs of the UV brightest LBGs exceed observations and can only be reconciled by accounting for an increased Lya attenuation of massive galaxies, which implies that the observed Lya brightest LAEs do not necessarily coincide with the UV brightest galaxies. We have analysed the dependencies of LAE observables on the properties of the galactic and intergalactic medium and the LAE-LBG connection, and this enhances our understanding of the nature of LAEs.},
  language  = {en}
}
@phdthesis{Huebner2014,
  author    = {H{\"u}bner, Sandra},
  title     = {Molekulare Grundlagen der Bittergeschmackswahrnehmung in der Maus},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-77720},
  school      = {Universit{\"a}t Potsdam},
  pages     = {X, 171, iii},
  year      = {2014},
  abstract  = {Der Bittergeschmack dient S{\"a}ugern vermutlich zur Wahrnehmung und Vermeidung toxischer Substanzen. Bitterstoffe k{\"o}nnen jedoch auch gesund sein oder werden oft bereitwillig mit der Nahrung aufgenommen. Ob sie geschmacklich unterschieden werden k{\"o}nnen, ist allerdings umstritten. Detektiert werden Bitterstoffe von oralen Bittergeschmacksrezeptoren, den TAS2R (human) bzw. Tas2r (murin). In der Literatur gibt es aber immer mehr Hinweise darauf, dass {\"u}berdies Tas2r nicht nur in extragustatorischen Organen exprimiert werden, sondern dort auch wichtige Aufgaben erf{\"u}llen k{\"o}nnten, was wiederum die Aufkl{\"a}rung ihrer noch nicht vollst{\"a}ndig entschl{\"u}sselten Funktionsweisen erfordert. So ist noch unbekannt, ob alle bisher als funktionell identifizierten Tas2r wirklich gustatorische Funktionen erf{\"u}llen. Im Rahmen der Charakterisierung neu generierter, im Locus des Bittergeschmacksrezeptors Tas2r131 genetisch modifizierter Mauslinien, wurde in vorliegender Arbeit die gustatorische sowie extragustatorische Expression von Tas2r131 untersucht. Dass Tas2r131 nicht nur in Pilzpapillen, Wall- und Bl{\"a}tterpapillen (VP+FoP), Gaumen, Ductus nasopalatinus, Vomeronasalorgan und Kehldeckel, sondern auch in Thymus, Testes und Nebenhodenkopf, in Gehirnarealen sowie im Ganglion geniculatum nachgewiesen wurde, bildete die Grundlage f{\"u}r weiterf{\"u}hrende Studien. Die vorliegende Arbeit zeigt außerdem, dass Tas2r108, Tas2r126, Tas2r135, Tas2r137 und Tas2r143 in Blut exprimiert werden, was auf eine heterogene Funktion der Tas2r hindeutet. Dass zus{\"a}tzlich erstmals die Expression aller 35 als funktionell beschriebenen Tas2r im gustatorischen VP+FoP-Epithel von C57BL/6-M{\"a}usen nachgewiesen wurde, verweist auf deren Relevanz als funktionelle Geschmacksrezeptoren. Weiter zeigten Untersuchungen zur Aufkl{\"a}rung eines m{\"o}glichen Bitter-Unterscheidungsverm{\"o}gens in Geschmackspapillen von M{\"a}usen mit fluoreszenzmarkierten oder ablatierten Tas2r131-Zellen, dass Tas2r131 exprimierende Zellen eine Tas2r-Zellsubpopulation bilden. Dar{\"u}ber hinaus existieren innerhalb der Bitterzellen geordnete Tas2r-Expressionsmuster, die sich nach der chromosomalen Lage ihrer Gene richten. Isolierte Bitterzellen reagieren heterogen auf bekannte Bitterstoffe. Und M{\"a}use mit ablatierter Tas2r131-Zellpopulation besitzen noch andere Tas2r-Zellen und schmecken damit einige Bitterstoffe kaum noch, andere aber noch sehr gut. Diese Befunde belegen die Existenz verschiedener gustatorischer Tas2r-Zellpopulationen, welche die Voraussetzung bilden, Bitterstoffe heterogen zu detektieren. Ob dies die Grundlage f{\"u}r ein divergierendes Verhalten gegen{\"u}ber unvertr{\"a}glichen und harmlosen oder gar n{\"u}tzlichen Bitterstoffen darstellt, kann mit Hilfe der dargelegten Tas2r-Expressionsmuster k{\"u}nftig in Verhaltensexperimenten gepr{\"u}ft werden. Die Bittergeschmackswahrnehmung in S{\"a}ugetieren stellt sich als ein hochkomplexer Mechanismus dar, dessen Vielschichtigkeit durch die hier neu aufgezeigten heterogenen Tas2r-Expressions- und Funktionsmuster erneut verdeutlicht wird.},
  language  = {de}
}
@phdthesis{Huettl2014,
  author    = {H{\"u}ttl, Christine},
  title     = {Synthese und Charakterisierung von multivalenten peptidbasierten Liganden als biomolekulare Erkennunngseinheit f{\"u}r Influenzaviren},
  address   = {Potsdam},
  pages     = {139 S.},
  year      = {2014},
  language  = {de}
}
@phdthesis{Ippen2014,
  author    = {Ippen, Christian Justus},
  title     = {Indium phosphide and zinc selenide quantum dots for light-emitting devices},
  pages     = {vii, 153},
  year      = {2014},
  language  = {en}
}
@phdthesis{Jueppner2014,
  author    = {J{\"u}ppner, Jessica},
  title     = {Characterization of metabolomic dynamics in synchronized Chlamydomonas reinhardtii cell cultures and the impact of TOR inhibition on cell cycle, proliferation and growth},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-76923},
  school      = {Universit{\"a}t Potsdam},
  pages     = {VI, 153},
  year      = {2014},
  abstract  = {The adaptation of cell growth and proliferation to environmental changes is essential for the surviving of biological systems. The evolutionary conserved Ser/Thr protein kinase "Target of Rapamycin" (TOR) has emerged as a major signaling node that integrates the sensing of numerous growth signals to the coordinated regulation of cellular metabolism and growth. Although the TOR signaling pathway has been widely studied in heterotrophic organisms, the research on TOR in photosynthetic eukaryotes has been hampered by the reported land plant resistance to rapamycin. Thus, the finding that Chlamydomonas reinhardtii is sensitive to rapamycin, establish this unicellular green alga as a useful model system to investigate TOR signaling in photosynthetic eukaryotes. The observation that rapamycin does not fully arrest Chlamydomonas growth, which is different from observations made in other organisms, prompted us to investigate the regulatory function of TOR in Chlamydomonas in context of the cell cycle. Therefore, a growth system that allowed synchronously growth under widely unperturbed cultivation in a fermenter system was set up and the synchronized cells were characterized in detail. In a highly resolved kinetic study, the synchronized cells were analyzed for their changes in cytological parameters as cell number and size distribution and their starch content. Furthermore, we applied mass spectrometric analysis for profiling of primary and lipid metabolism. This system was then used to analyze the response dynamics of the Chlamydomonas metabolome and lipidome to TOR-inhibition by rapamycin The results show that TOR inhibition reduces cell growth, delays cell division and daughter cell release and results in a 50\% reduced cell number at the end of the cell cycle. Consistent with the growth phenotype we observed strong changes in carbon and nitrogen partitioning in the direction of rapid conversion into carbon and nitrogen storage through an accumulation of starch, triacylglycerol and arginine. Interestingly, it seems that the conversion of carbon into triacylglycerol occurred faster than into starch after TOR inhibition, which may indicate a more dominant role of TOR in the regulation of TAG biosynthesis than in the regulation of starch. This study clearly shows, for the first time, a complex picture of metabolic and lipidomic dynamically changes during the cell cycle of Chlamydomonas reinhardtii and furthermore reveals a complex regulation and adjustment of metabolite pools and lipid composition in response to TOR inhibition.},
  language  = {en}
}
@phdthesis{Kaiser2014,
  author    = {Kaiser, Bj{\"o}rn Onno},
  title     = {Heat transport processes within the Northeast German basin},
  school      = {Universit{\"a}t Potsdam},
  pages     = {113},
  year      = {2014},
  language  = {en}
}
@phdthesis{Kamprad2014,
  author    = {Kamprad, Fanny},
  title     = {Einfluss von Zink auf die intestinale Mikrobiota im Ferkel und der mono-assoziirten Maus},
  publisher = {Universit{\"a}tsverlag Potsdam},
  address   = {Potsdam},
  school      = {Universit{\"a}t Potsdam},
  pages     = {VIII , 92},
  year      = {2014},
  language  = {de}
}
@phdthesis{Kamprath2014,
  author    = {Kamprath, Martin},
  title     = {A microfoundations perspectives on fresight and business models},
  pages     = {224},
  year      = {2014},
  language  = {en}
}
@phdthesis{Kim2014,
  author    = {Kim, Tae San},
  title     = {Die F{\"o}rderungspolitik des Flottenbaues in der wilhelminischen Gesellschaft : die propagandistische Strategie des Deutschen Flotten-Vereins in den Jahren 1898-1914},
  address   = {Potsdam},
  pages     = {403 S.},
  year      = {2014},
  language  = {de}
}
@phdthesis{Kirchhecker2014,
  author    = {Kirchhecker, Sarah},
  title     = {Renewable imidazolium zwitterions as platform molecules for the synthesis of ionic liquids and materials},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-77412},
  school      = {Universit{\"a}t Potsdam},
  pages     = {136},
  year      = {2014},
  abstract  = {Following the principles of green chemistry, a simple and efficient synthesis of functionalised imidazolium zwitterionic compounds from renewable resources was developed based on a modified one-pot Debus-Radziszewski reaction. The combination of different carbohydrate-derived 1,2-dicarbonyl compounds and amino acids is a simple way to modulate the properties and introduce different functionalities. A representative compound was assessed as an acid catalyst, and converted into acidic ionic liquids by reaction with several strong acids. The reactivity of the double carboxylic functionality was explored by esterification with long and short chain alcohols, as well as functionalised amines, which led to the straightforward formation of surfactant-like molecules or bifunctional esters and amides. One of these di-esters is currently being investigated for the synthesis of poly(ionic liquids). The functionalisation of cellulose with one of the bifunctional esters was investigated and preliminary tests employing it for the functionalisation of filter papers were carried out successfully. The imidazolium zwitterions were converted into ionic liquids via hydrothermal decarboxylation in flow, a benign and scalable technique. This method provides access to imidazolium ionic liquids via a simple and sustainable methodology, whilst completely avoiding contamination with halide salts. Different ionic liquids can be generated depending on the functionality contained in the ImZw precursor. Two alanine-derived ionic liquids were assessed for their physicochemical properties and applications as solvents for the dissolution of cellulose and the Heck coupling.},
  language  = {en}
}
@phdthesis{Klaper2014,
  author    = {Klaper, Matthias},
  title     = {Untersuchungen zum intramolekularen Transfer von Singulettsauerstoff auf Acene und Alkene},
  school      = {Universit{\"a}t Potsdam},
  pages     = {118},
  year      = {2014},
  language  = {de}
}
@phdthesis{Knobloch2014,
  author    = {Knobloch, Michael},
  title     = {Preußische K{\"o}nige im Spiegel der {\"O}ffentlichkeit (1780-1806)},
  series = {Aufkl{\"a}rung und Moderne},
  volume    = {29},
  journal   = {Aufkl{\"a}rung und Moderne},
  publisher = {Wehrhahn},
  address   = {Hannover},
  isbn      = {978-3-8652-353-8},
  issn      = {1864-1601},
  pages     = {409 S.},
  year      = {2014},
  language  = {de}
}
@phdthesis{Koch2014,
  author    = {Koch, Helvi},
  title     = {Effekte des um Selbstregulationsprozeduren angereicherten reziproken Lehrens},
  pages     = {xi, 298},
  year      = {2014},
  language  = {de}
}
@phdthesis{Kollosche2014,
  author    = {Kollosche, David},
  title     = {Gesellschaft, Mathematik und Unterricht : ein Beitrag zum soziologisch-kritischen Verst{\"a}ndnis der gesellschaftlichen Funktionen des Mathematikunterrichts},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70726},
  school      = {Universit{\"a}t Potsdam},
  year      = {2014},
  abstract  = {Die vorliegende Studie untersucht die gesellschaftliche Rolle des gegenw{\"a}rtigen Mathematikunterrichts an deutschen allgemeinbildenden Schulen aus einer soziologisch-kritischen Perspektive. In Zentrum des Interesses steht die durch den Mathematikunterricht erfahrene Sozialisation. Die Studie umfasst unter anderem eine Literaturdiskussion, die Ausarbeitung eines soziologischen Rahmens auf der Grundlage des Werks von Michel Foucault und zwei Teilstudien zur Soziologie der Logik und des Rechnens. Abschließend werden Dispositive des Mathematischen beschrieben, die darlegen, in welcher Art und mit welcher pers{\"o}nlichen und gesellschaftlichen Folgen der gegenw{\"a}rtige Mathematikunterricht eine spezielle Geisteshaltung etabliert.},
  language  = {de}
}
@phdthesis{KowitzHarms2014,
  author    = {Kowitz-Harms, Stephanie},
  title     = {Die Shoah im Spiegel {\"o}ffentlicher Konflikte in Polen : zwischen Opfermythos und Schuldfrage (1985 - 2001)},
  series = {Europ{\"a}isch-J{\"u}dische Studien Beitr{\"a}ge},
  volume    = {4},
  journal   = {Europ{\"a}isch-J{\"u}dische Studien Beitr{\"a}ge},
  publisher = {de Gruyter},
  address   = {Berlin},
  isbn      = {978-3-11-027437-0},
  issn      = {2192-9602},
  pages     = {247 S.},
  year      = {2014},
  language  = {de}
}
@phdthesis{Kruegel2014,
  author    = {Kr{\"u}gel, Andr{\´e}},
  title     = {Eye movement control during reading : factors and principles of computing the word center for saccade planning},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72599},
  school      = {Universit{\"a}t Potsdam},
  year      = {2014},
  abstract  = {Reading is a complex cognitive task based on the analyses of visual stimuli. Due to the physiology of the eye, only a small number of letters around the fixation position can be extracted with high visual acuity, while the visibility of words and letters outside this so-called foveal region quickly drops with increasing eccentricity. As a consequence, saccadic eye movements are needed to repeatedly shift the fovea to new words for visual word identification during reading. Moreover, even within a foveated word fixation positions near the word center are superior to other fixation positions for efficient word recognition (O'Regan, 1981; Brysbaert, Vitu, and Schroyens, 1996). Thus, most reading theories assume that readers aim specifically at word centers during reading (for a review see Reichle, Rayner, \& Pollatsek, 2003). However, saccades' landing positions within words during reading are in fact systematically modulated by the distance of the launch site from the word center (McConkie, Kerr, Reddix, \& Zola, 1988). In general, it is largely unknown how readers identify the center of upcoming target words and there is no computational model of the sensorimotor translation of the decision for a target word into spatial word center coordinates. Here we present a series of three studies which aim at advancing the current knowledge about the computation of saccade target coordinates during saccade planning in reading. Based on a large corpus analyses, we firstly identified word skipping as a further factor beyond the launch-site distance with a likewise systematic and surprisingly large effect on within-word landing positions. Most importantly, we found that the end points of saccades after skipped word are shifted two and more letters to the left as compared to one-step saccades (i.e., from word N to word N+1) with equal launch-site distances. Then we present evidence from a single saccade experiment suggesting that the word-skipping effect results from highly automatic low-level perceptual processes, which are essentially based on the localization of blank spaces between words. Finally, in the third part, we present a Bayesian model of the computation of the word center from primary sensory measurements of inter-word spaces. We demonstrate that the model simultaneously accounts for launch-site and saccade-type contingent modulations of within-word landing positions in reading. Our results show that the spatial saccade target during reading is the result of complex estimations of the word center based on incomplete sensory information, which also leads to specific systematic deviations of saccades' landing positions from the word center. Our results have important implications for current reading models and experimental reading research.},
  language  = {en}
}
@phdthesis{Krueger2014,
  author    = {Kr{\"u}ger, Jens},
  title     = {Enterprise-specific in-memory data managment : HYRISEc - an in-memory column store engine for OLXP},
  publisher = {Hasso-Plattner-Insitut},
  address   = {Potsdam},
  pages     = {201 S.},
  year      = {2014},
  language  = {en}
}
@phdthesis{Kunze2014,
  author    = {Kunze, Christoph},
  title     = {Das Merkmal "unbefugter" in den Strafnormen des Besonderen Teils des StGB},
  series = {Schriftenreihe zum Strafrecht},
  volume    = {259},
  journal   = {Schriftenreihe zum Strafrecht},
  publisher = {Duncker \& Humblot},
  address   = {Berlin},
  isbn      = {978-3-428-14313-9},
  doi       = {10.3790/978-3-428-54313-7},
  pages     = {274 S.},
  year      = {2014},
  language  = {de}
}
@phdthesis{Koelsch2014,
  author    = {K{\"o}lsch, Jonas David},
  title     = {Entwicklung neuer farbstoffmarkierter Polymere zur Visualisierung des LCST-Phasen{\"u}bergangs in w{\"a}ssriger L{\"o}sung},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72531},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xvi, 147},
  year      = {2014},
  abstract  = {Ziel der Arbeit war die Entwicklung von farbstoffmarkierten Polymeren, die einen temperaturgetriebenen Kn{\"a}uel-Kollaps-Phasen{\"u}bergang in w{\"a}ssriger L{\"o}sung ("thermo-responsive Polymere") zeigen und diesen in ein optisches Signal {\"u}bersetzen k{\"o}nnen. Solche Polymere unterliegen innerhalb eines kleinen Temperaturintervalls einer massiven {\"A}nderung ihres Verhaltens, z B. ihrer Konformation und ihres Quellungsgrads. Diese {\"A}nderungen sind mit einem Wechsel der L{\"o}seeigenschaften von hydrophil zu hydrophob verbunden. Als Matrixpolymere wurden Poly-N-isopropylacrylamid (polyNIPAm), Poly(oligoethylen-glykolacrylat) (polyOEGA) und Poly(oligoethylenglykolmethacrylat) (polyOEGMA) ein-gesetzt, in die geeignete Farbstoffen durch Copolymerisation eingebaut wurden. Als besonders geeignet, um den Phasen{\"u}bergang in ein optisches Signal zu {\"u}bersetzen, erwiesen sich hierf{\"u}r kompakte, solvatochrome Cumarin- und Naphthalimidderivate. Diese beeintr{\"a}chtigten weder das Polymerisationsverhalten noch den Phasen{\"u}bergang, reagierten aber sowohl bez{\"u}glich Farbe als auch Fluoreszenz stark auf die Polarit{\"a}t des L{\"o}semittels. Weiterhin wurden Systeme entwickelt, die mittels Energietransfer (FRET) ein an den Phasen{\"u}bergang gekoppeltes optisches Signal erzeugen. Hierbei wurde ein Cumarin als Donor- und ein Polythiophen als Akzeptorfarbstoff eingesetzt. Es zeigte sich, dass trotz scheinbarer {\"A}hnlichkeit bestimmte Polymere ausgepr{\"a}gt auf einen Temperaturstimulus mit {\"A}nderung ihrer spektralen Eigenschaften reagieren, andere aber nicht. Hierf{\"u}r wurden die molekularen Ursachen untersucht. Als wahrscheinliche Gr{\"u}nde f{\"u}r das Ausbleiben einer spektralen {\"A}nderung in Oligo(ethylenglykol)-basierten Polymeren sind zum einen die fehlende Dehydratationseffektivit{\"a}t infolge des Fehlens eines selbstgen{\"u}genden Wasserstoffbr{\"u}ckenbindungsmotivs zu nennen und zum anderen die sterische Abschirmung der Farbstoffe durch die Oligo(ethylenglykol)-Seitenketten. Als Prinzipbeweis f{\"u}r die N{\"u}tzlichkeit solcher Systeme f{\"u}r die Bioanalytik wurde ein System entwickelt, dass die L{\"o}slichkeitseigenschaft eines thermoresponsiven Polymers durch Antik{\"o}rper-Antigen-Reaktion {\"a}nderte. Die Bindung selbst kleiner Mengen eines Antik{\"o}rpers ließ sich so direkt optisch auslesen und war bereits mit dem bloßen Auge zu erkennen.},
  language  = {de}
}
@phdthesis{Kueppers2014,
  author    = {K{\"u}ppers, Patrick},
  title     = {Die Sprache der Großstadt : Zeitkritik und {\"a}sthetische Moderne in den fr{\"u}hnaturalistischen Berlinromanen Max Kretzers},
  publisher = {Tectum Wissenschaftsverlag},
  address   = {Marburg},
  isbn      = {978-3-8288-3367-8},
  pages     = {320 S.},
  year      = {2014},
  language  = {de}
}
@phdthesis{Ladewig2014,
  author    = {Ladewig, Marco},
  title     = {Rom - die antike Seerepublik : Untersuchungen zur Thalassokratie der res publica populi romani von den Anf{\"a}ngen bis zur Begr{\"u}ndung des Principat},
  series = {Potsdamer Altertumswissenschaftliche Beitr{\"a}ge},
  volume    = {48},
  journal   = {Potsdamer Altertumswissenschaftliche Beitr{\"a}ge},
  publisher = {Franz Steiner Verlag},
  address   = {Stuttgart},
  isbn      = {978-3-515-10730-3},
  pages     = {371 S.},
  year      = {2014},
  language  = {de}
}
@phdthesis{Landerer2014,
  author    = {Landerer, Steffi},
  title     = {Sripted reality : Historie, Tendenzen, Potenziale},
  series = {University Thesis},
  volume    = {1},
  journal   = {University Thesis},
  publisher = {WeltTrends},
  address   = {Potsdam},
  isbn      = {978-3-941880-89-4},
  pages     = {93 S.},
  year      = {2014},
  language  = {de}
}
@phdthesis{Lang2014,
  author    = {Lang, Iris Scarlett},
  title     = {Fetal programming of growth and metabolism by maternal dietary composition},
  pages     = {99},
  year      = {2014},
  language  = {en}
}
@phdthesis{Lange2014,
  author    = {Lange, Ilja},
  title     = {Energetische Struktur von Schichten organischer Halbleiter und ihr fundamentaler Einfluss auf die physikalischen Eigenschaften organischer elektronischer Bauteile},
  school      = {Universit{\"a}t Potsdam},
  pages     = {105},
  year      = {2014},
  language  = {de}
}
@phdthesis{Leenen2014,
  author    = {Leenen, Frederik},
  title     = {Urheberrecht und computergest{\"u}tzte Erkennung : zugleich ein Beitrag zu den Voraussetzungen eines Innominatfalls, der Reichweite der schlichten Einwilligung im Internet und der Anwendbarkeit der \S\S 8 - 10 TMG auf Suchdienste},
  series = {Schriften zum Medien- und Informationsrecht},
  volume    = {9},
  journal   = {Schriften zum Medien- und Informationsrecht},
  publisher = {Nomos},
  address   = {Baden-Baden},
  isbn      = {978-3-8487-1399-8},
  pages     = {272 S.},
  year      = {2014},
  language  = {de}
}
@phdthesis{Li2014,
  author    = {Li, Xia},
  title     = {Global warming - high night temperature, heat and drought - affects enzyme activity, transcriptome and metabolome in rice cultivars with different tolerance},
  address   = {Potsdam},
  pages     = {143 S.},
  year      = {2014},
  language  = {en}
}
@phdthesis{Liebs2014,
  author    = {Liebs, G{\"o}ran},
  title     = {Ground penetration radar wave velocities and their uncertainties},
  doi       = {10.25932/publishup-43680},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-436807},
  school      = {Universit{\"a}t Potsdam},
  pages     = {ii, 106},
  year      = {2014},
  abstract  = {We develop three new approaches for ground penetration wave velocity calcultaions. The first is based on linear moveout spectra to find the optimum ground wave velocity including uncertainties from multi-offset data gathers. We used synthetic data to illustrate the principles of the method and to investigate uncertainties in ground wave velocity estimates. To demonstrate the applicability of the approach to real data, we analyzed GPR data sets recorded at field sites in Canada over an annual cycle from Steelman \& Endres [2010]. The results obtained by this efficient and largely automated procedure agree well with the manual achieved results of Steelman \& Endres [2010], derived by a more laborious largely manual analysis strategy. Then we develop a second methodology to global invert reflection traveltimes with a particle swarm optimization approach more precise then conventional spectral NMO-based velocity analysis (e.g., Greaves et al. [1996]). For global optimization, we use particle swarm optimization (PSO; Kennedy \& Eberhart [1995]) in the combination with a fast eikonal solver as forward solver (Sethian [1996]; Fomel [1997a]; Sethian \& Popovici [1999]). This methodology allows us to generate reliability CMP derived models of subsurface velocities and water content including uncertainties. We test this method with synthetic data to study the behavior of the PSO algorithm. Afterward, We use this method to analyze our field data from a well constrained test site in Horstwalde, Germany. The achieved velocity models from field data showed good agreement to borehole logging and direct-push data (Schmelzbach et al. [2011]) at the same site position. For the third method we implement a global optimization approach also based on PSO to invert direct-arrival traveltimes of VRP data to obtain high resolution 1D velocity models including quantitative estimates of uncertainty. Our intensive tests with several traveltime data sets helped to understand the behavior of PSO algorithm for inversion. Integration of the velocity model to VRP reflection imaging and attenuation model improved the potential of VRP surveying. Using field data, we examine this novel analysis strategy for the development of petrophysical models and the linking between GPR borehole and other logging data to surface GPR reflection data.},
  language  = {de}
}
@phdthesis{Lincke2014,
  author    = {Lincke, Jens},
  title     = {Evolving Tools in a Collaborative Self-supporting Development Environment},
  school      = {Universit{\"a}t Potsdam},
  pages     = {164},
  year      = {2014},
  language  = {en}
}