@phdthesis{Ahmad2014, author = {Ahmad, Nadeem}, title = {People centered HMI's for deaf and functionally illiterate users}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70391}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {The objective and motivation behind this research is to provide applications with easy-to-use interfaces to communities of deaf and functionally illiterate users, which enables them to work without any human assistance. Although recent years have witnessed technological advancements, the availability of technology does not ensure accessibility to information and communication technologies (ICT). Extensive use of text from menus to document contents means that deaf or functionally illiterate can not access services implemented on most computer software. Consequently, most existing computer applications pose an accessibility barrier to those who are unable to read fluently. Online technologies intended for such groups should be developed in continuous partnership with primary users and include a thorough investigation into their limitations, requirements and usability barriers. In this research, I investigated existing tools in voice, web and other multimedia technologies to identify learning gaps and explored ways to enhance the information literacy for deaf and functionally illiterate users. I worked on the development of user-centered interfaces to increase the capabilities of deaf and low literacy users by enhancing lexical resources and by evaluating several multimedia interfaces for them. The interface of the platform-independent Italian Sign Language (LIS) Dictionary has been developed to enhance the lexical resources for deaf users. The Sign Language Dictionary accepts Italian lemmas as input and provides their representation in the Italian Sign Language as output. The Sign Language dictionary has 3082 signs as set of Avatar animations in which each sign is linked to a corresponding Italian lemma. I integrated the LIS lexical resources with MultiWordNet (MWN) database to form the first LIS MultiWordNet(LMWN). LMWN contains information about lexical relations between words, semantic relations between lexical concepts (synsets), correspondences between Italian and sign language lexical concepts and semantic fields (domains). The approach enhances the deaf users' understanding of written Italian language and shows that a relatively small set of lexicon can cover a significant portion of MWN. Integration of LIS signs with MWN made it useful tool for computational linguistics and natural language processing. The rule-based translation process from written Italian text to LIS has been transformed into service-oriented system. The translation process is composed of various modules including parser, semantic interpreter, generator, and spatial allocation planner. This translation procedure has been implemented in the Java Application Building Center (jABC), which is a framework for extreme model driven design (XMDD). The XMDD approach focuses on bringing software development closer to conceptual design, so that the functionality of a software solution could be understood by someone who is unfamiliar with programming concepts. The transformation addresses the heterogeneity challenge and enhances the re-usability of the system. For enhancing the e-participation of functionally illiterate users, two detailed studies were conducted in the Republic of Rwanda. In the first study, the traditional (textual) interface was compared with the virtual character-based interactive interface. The study helped to identify usability barriers and users evaluated these interfaces according to three fundamental areas of usability, i.e. effectiveness, efficiency and satisfaction. In another study, we developed four different interfaces to analyze the usability and effects of online assistance (consistent help) for functionally illiterate users and compared different help modes including textual, vocal and virtual character on the performance of semi-literate users. In our newly designed interfaces the instructions were automatically translated in Swahili language. All the interfaces were evaluated on the basis of task accomplishment, time consumption, System Usability Scale (SUS) rating and number of times the help was acquired. The results show that the performance of semi-literate users improved significantly when using the online assistance. The dissertation thus introduces a new development approach in which virtual characters are used as additional support for barely literate or naturally challenged users. Such components enhanced the application utility by offering a variety of services like translating contents in local language, providing additional vocal information, and performing automatic translation from text to sign language. Obviously, there is no such thing as one design solution that fits for all in the underlying domain. Context sensitivity, literacy and mental abilities are key factors on which I concentrated and the results emphasize that computer interfaces must be based on a thoughtful definition of target groups, purposes and objectives.}, language = {en} } @phdthesis{Arnold2014, author = {Arnold, Anne}, title = {Modeling photosynthesis and related metabolic processes : from detailed examination to consideration of the metabolic context}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72277}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Mathematical modeling of biological systems is a powerful tool to systematically investigate the functions of biological processes and their relationship with the environment. To obtain accurate and biologically interpretable predictions, a modeling framework has to be devised whose assumptions best approximate the examined scenario and which copes with the trade-off of complexity of the underlying mathematical description: with attention to detail or high coverage. Correspondingly, the system can be examined in detail on a smaller scale or in a simplified manner on a larger scale. In this thesis, the role of photosynthesis and its related biochemical processes in the context of plant metabolism was dissected by employing modeling approaches ranging from kinetic to stoichiometric models. The Calvin-Benson cycle, as primary pathway of carbon fixation in C3 plants, is the initial step for producing starch and sucrose, necessary for plant growth. Based on an integrative analysis for model ranking applied on the largest compendium of (kinetic) models for the Calvin-Benson cycle, those suitable for development of metabolic engineering strategies were identified. Driven by the question why starch rather than sucrose is the predominant transitory carbon storage in higher plants, the metabolic costs for their synthesis were examined. The incorporation of the maintenance costs for the involved enzymes provided a model-based support for the preference of starch as transitory carbon storage, by only exploiting the stoichiometry of synthesis pathways. Many photosynthetic organisms have to cope with processes which compete with carbon fixation, such as photorespiration whose impact on plant metabolism is still controversial. A systematic model-oriented review provided a detailed assessment for the role of this pathway in inhibiting the rate of carbon fixation, bridging carbon and nitrogen metabolism, shaping the C1 metabolism, and influencing redox signal transduction. The demand of understanding photosynthesis in its metabolic context calls for the examination of the related processes of the primary carbon metabolism. To this end, the Arabidopsis core model was assembled via a bottom-up approach. This large-scale model can be used to simulate photoautotrophic biomass production, as an indicator for plant growth, under so-called optimal, carbon-limiting and nitrogen-limiting growth conditions. Finally, the introduced model was employed to investigate the effects of the environment, in particular, nitrogen, carbon and energy sources, on the metabolic behavior. This resulted in a purely stoichiometry-based explanation for the experimental evidence for preferred simultaneous acquisition of nitrogen in both forms, as nitrate and ammonium, for optimal growth in various plant species. The findings presented in this thesis provide new insights into plant system's behavior, further support existing opinions for which mounting experimental evidences arise, and posit novel hypotheses for further directed large-scale experiments.}, language = {en} } @phdthesis{Bamberg2014, author = {Bamberg, Marlene}, title = {Planetary mapping tools applied to floor-fractured craters on Mars}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72104}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Planetary research is often user-based and requires considerable skill, time, and effort. Unfortunately, self-defined boundary conditions, definitions, and rules are often not documented or not easy to comprehend due to the complexity of research. This makes a comparison to other studies, or an extension of the already existing research, complicated. Comparisons are often distorted, because results rely on different, not well defined, or even unknown boundary conditions. The purpose of this research is to develop a standardized analysis method for planetary surfaces, which is adaptable to several research topics. The method provides a consistent quality of results. This also includes achieving reliable and comparable results and reducing the time and effort of conducting such studies. A standardized analysis method is provided by automated analysis tools that focus on statistical parameters. Specific key parameters and boundary conditions are defined for the tool application. The analysis relies on a database in which all key parameters are stored. These databases can be easily updated and adapted to various research questions. This increases the flexibility, reproducibility, and comparability of the research. However, the quality of the database and reliability of definitions directly influence the results. To ensure a high quality of results, the rules and definitions need to be well defined and based on previously conducted case studies. The tools then produce parameters, which are obtained by defined geostatistical techniques (measurements, calculations, classifications). The idea of an automated statistical analysis is tested to proof benefits but also potential problems of this method. In this study, I adapt automated tools for floor-fractured craters (FFCs) on Mars. These impact craters show a variety of surface features, occurring in different Martian environments, and having different fracturing origins. They provide a complex morphological and geological field of application. 433 FFCs are classified by the analysis tools due to their fracturing process. Spatial data, environmental context, and crater interior data are analyzed to distinguish between the processes involved in floor fracturing. Related geologic processes, such as glacial and fluvial activity, are too similar to be separately classified by the automated tools. Glacial and fluvial fracturing processes are merged together for the classification. The automated tools provide probability values for each origin model. To guarantee the quality and reliability of the results, classification tools need to achieve an origin probability above 50 \%. This analysis method shows that 15 \% of the FFCs are fractured by intrusive volcanism, 20 \% by tectonic activity, and 43 \% by water \& ice related processes. In total, 75 \% of the FFCs are classified to an origin type. This can be explained by a combination of origin models, superposition or erosion of key parameters, or an unknown fracturing model. Those features have to be manually analyzed in detail. Another possibility would be the improvement of key parameters and rules for the classification. This research shows that it is possible to conduct an automated statistical analysis of morphologic and geologic features based on analysis tools. Analysis tools provide additional information to the user and are therefore considered assistance systems.}, language = {en} } @phdthesis{Busching2014, author = {Busching, Robert}, title = {Affektive und kognitive Desensibilisierung als Konsequenz von Mediengewaltkonsum : eine experimentelle Untersuchung auf Basis lerntheoretischer {\"U}berlegungen}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71360}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {NutzerInnen von gewalthaltigen Medien geben einerseits oftmals zu, dass sie fiktionale, gewalthaltige Medien konsumieren, behaupten jedoch gleichzeitig, dass dies nicht ihr Verhalten außerhalb des Medienkontexts beeinflusst. Sie argumentieren, dass sie leicht zwischen Dingen, die im fiktionalen Kontext und Dingen, die in der Realit{\"a}t gelernt wurden, unterscheiden k{\"o}nnen. Im Kontrast zu diesen Aussagen zeigen Metanalysen Effektst{\"a}rken im mittleren Bereich f{\"u}r den Zusammenhang zwischen Gewaltmedienkonsum und aggressivem Verhalten. Diese Ergebnisse k{\"o}nnen nur erkl{\"a}rt werden, wenn MediennutzerInnen gewalthaltige Lernerfahrungen auch außerhalb des Medienkontexts anwenden. Ein Prozess, der Lernerfahrungen innerhalb des Medienkontexts mit dem Verhalten in der realen Welt verkn{\"u}pft, ist Desensibilisierung, die oftmals eine Reduktion des negativen Affektes gegen{\"u}ber Gewalt definiert ist. Zur Untersuchung des Desensibilisierungsprozesses wurden vier Experimente durchgef{\"u}hrt. Die erste in dieser Arbeit untersuchte Hypothese war, dass je h{\"a}ufiger Personen Gewaltmedien konsumieren, desto weniger negativen Affekt zeigen sie gegen{\"u}ber Bildern mit realer Gewalt. Jedoch wurde angenommen, dass diese Bewertung auf Darstellungen von realer Gewalt beschr{\"a}nkt ist und nicht bei Bildern ohne Gewaltbezug, die einen negativen Affekt ausl{\"o}sen, zu finden ist. Die zweite Hypothese bezog sich auf den Affekt w{\"a}hrend des Konsums von Mediengewalt. Hier wurde angenommen, dass besonders Personen, die Freude an Gewalt in den Medien empfinden weniger negativen Affekt gegen{\"u}ber realen Gewaltdarstellungen zeigen. Die letzte Hypothese besch{\"a}ftigte sich mit kognitiver Desensibilisierung und sagte vorher, dass Gewaltmedienkonsum zu einem Transfer von Reaktionen, die normalerweise gegen{\"u}ber gewalthaltigen Reizen gezeigt werden, auf urspr{\"u}nglich neutrale Reize f{\"u}hrt. Das erste Experiment (N = 57) untersuchte, ob die habituelle Nutzung von gewalthaltigen Medien den selbstberichteten Affekt (Valenz und Aktivierung) gegen{\"u}ber Darstellungen von realer Gewalt und nichtgewalthaltigen Darstellungen, die negativen Affekt ausl{\"o}sen, vorhersagt. Die habituelle Nutzung von gewalthaltigen Medien sagte weniger negative Valenz und weniger allgemeine Aktivierung gegen{\"u}ber gewalthalten und nichtgewalthaltigen Bildern vorher. Das zweite Experiment (N = 103) untersuchte auch die Beziehung zwischen habituellem Gewaltmedienkonsum und den affektiven Reaktionen gegen{\"u}ber Bildern realer Gewalt und negativen affektausl{\"o}senden Bildern. Als weiterer Pr{\"a}diktor wurde der Affekt beim Betrachten von gewalthaltigen Medien hinzugef{\"u}gt. Der Affekt gegen{\"u}ber den Bildern wurde zus{\"a}tzlich durch psychophysiologische Maße (Valenz: C: Supercilii; Aktivierung: Hautleitreaktion) erhoben. Wie zuvor sagte habitueller Gewaltmedienkonsum weniger selbstberichte Erregung und weniger negative Valenz f{\"u}r die gewalthaltigen und die negativen, gewalthaltfreien Bilder vorher. Die physiologischen Maßen replizierten dieses Ergebnis. Jedoch zeigte sich ein anderes Muster f{\"u}r den Affekt beim Konsum von Gewalt in den Medien. Personen, die Gewalt in den Medien st{\"a}rker erfreut, zeigen eine Reduktion der Responsivit{\"a}t gegen{\"u}ber Gewalt auf allen vier Maßen. Weiterhin war bei drei dieser vier Maße (selbstberichte Valenz, Aktivit{\"a}t des C. Supercilii und Hautleitreaktion) dieser Zusammenhang auf die gewalthaltigen Bilder beschr{\"a}nkt, mit keinem oder nur einem kleinen Effekt auf die negativen, aber nichtgewalthaltigen Bilder. Das dritte Experiment (N = 73) untersuchte den Affekt w{\"a}hrend die Teilnehmer ein Computerspiel spielten. Das Spiel wurde eigens f{\"u}r dieses Experiment programmiert, sodass einzelne Handlungen im Spiel mit der Aktivit{\"a}t des C. Supercilii, dem Indikator f{\"u}r negativen Affekt, in Bezug gesetzt werden konnten. Die Analyse des C. Supercilii zeigte, dass wiederholtes Durchf{\"u}hren von aggressiven Spielz{\"u}gen zu einem R{\"u}ckgang von negativen Affekt f{\"u}hrte, der die aggressiven Spielhandlungen begleitete. Der negative Affekt w{\"a}hrend gewalthaltiger Spielz{\"u}ge wiederum sagte die affektive Reaktion gegen{\"u}ber Darstellungen von gewalthaltigen Bildern vorher, nicht jedoch gegen{\"u}ber den negativen Bildern. Das vierte Experiment (N = 77) untersuchte kognitive Desensibilisierung, die die Entwicklung von Verkn{\"u}pfungen zwischen neutralen und aggressiven Kognitionen beinhaltete. Die Teilnehmer spielten einen Ego-Shooter entweder auf einem Schiff- oder einem Stadtlevel. Die Beziehung zwischen den neutralen Konstrukten (Schiff/Stadt) und den aggressiven Kognitionen wurde mit einer lexikalischen Entscheidungsaufgabe gemessen. Das Spielen im Schiff-/Stadt-Level f{\"u}hrte zu einer k{\"u}rzen Reaktionszeit f{\"u}r aggressive W{\"o}rter, wenn sie einem Schiff- bzw. Stadtprime folgten. Dies zeigte, dass die im Spiel enthaltenen neutralen Konzepte mit aggressiven Knoten verkn{\"u}pft werden. Die Ergebnisse dieser vier Experimente wurden diskutiert im Rahmen eines lerntheoretischen Ansatzes um Desensibilisierung zu konzeptualisieren.}, language = {de} } @phdthesis{Hebig2014, author = {Hebig, Regina}, title = {Evolution of model-driven engineering settings in practice}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70761}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Nowadays, software systems are getting more and more complex. To tackle this challenge most diverse techniques, such as design patterns, service oriented architectures (SOA), software development processes, and model-driven engineering (MDE), are used to improve productivity, while time to market and quality of the products stay stable. Multiple of these techniques are used in parallel to profit from their benefits. While the use of sophisticated software development processes is standard, today, MDE is just adopted in practice. However, research has shown that the application of MDE is not always successful. It is not fully understood when advantages of MDE can be used and to what degree MDE can also be disadvantageous for productivity. Further, when combining different techniques that aim to affect the same factor (e.g. productivity) the question arises whether these techniques really complement each other or, in contrast, compensate their effects. Due to that, there is the concrete question how MDE and other techniques, such as software development process, are interrelated. Both aspects (advantages and disadvantages for productivity as well as the interrelation to other techniques) need to be understood to identify risks relating to the productivity impact of MDE. Before studying MDE's impact on productivity, it is necessary to investigate the range of validity that can be reached for the results. This includes two questions. First, there is the question whether MDE's impact on productivity is similar for all approaches of adopting MDE in practice. Second, there is the question whether MDE's impact on productivity for an approach of using MDE in practice remains stable over time. The answers for both questions are crucial for handling risks of MDE, but also for the design of future studies on MDE success. This thesis addresses these questions with the goal to support adoption of MDE in future. To enable a differentiated discussion about MDE, the term MDE setting'' is introduced. MDE setting refers to the applied technical setting, i.e. the employed manual and automated activities, artifacts, languages, and tools. An MDE setting's possible impact on productivity is studied with a focus on changeability and the interrelation to software development processes. This is done by introducing a taxonomy of changeability concerns that might be affected by an MDE setting. Further, three MDE traits are identified and it is studied for which manifestations of these MDE traits software development processes are impacted. To enable the assessment and evaluation of an MDE setting's impacts, the Software Manufacture Model language is introduced. This is a process modeling language that allows to reason about how relations between (modeling) artifacts (e.g. models or code files) change during application of manual or automated development activities. On that basis, risk analysis techniques are provided. These techniques allow identifying changeability risks and assessing the manifestations of the MDE traits (and with it an MDE setting's impact on software development processes). To address the range of validity, MDE settings from practice and their evolution histories were capture in context of this thesis. First, this data is used to show that MDE settings cover the whole spectrum concerning their impact on changeability or interrelation to software development processes. Neither it is seldom that MDE settings are neutral for processes nor is it seldom that MDE settings have impact on processes. Similarly, the impact on changeability differs relevantly. Second, a taxonomy of evolution of MDE settings is introduced. In that context it is discussed to what extent different types of changes on an MDE setting can influence this MDE setting's impact on changeability and the interrelation to processes. The category of structural evolution, which can change these characteristics of an MDE setting, is identified. The captured MDE settings from practice are used to show that structural evolution exists and is common. In addition, some examples of structural evolution steps are collected that actually led to a change in the characteristics of the respective MDE settings. Two implications are: First, the assessed diversity of MDE settings evaluates the need for the analysis techniques that shall be presented in this thesis. Second, evolution is one explanation for the diversity of MDE settings in practice. To summarize, this thesis studies the nature and evolution of MDE settings in practice. As a result support for the adoption of MDE settings is provided in form of techniques for the identification of risks relating to productivity impacts.}, language = {en} } @phdthesis{Herenz2014, author = {Herenz, Peter}, title = {A study of the absorption characteristics of gaseous galaxy halos in the local Universe}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70513}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Today, it is well known that galaxies like the Milky Way consist not only of stars but also of gas and dust. The galactic halo, a sphere of gas that surrounds the stellar disk of a galaxy, is especially interesting. It provides a wealth of information about in and outflowing gaseous material towards and away from galaxies and their hierarchical evolution. For the Milky Way, the so-called high-velocity clouds (HVCs), fast moving neutral gas complexes in the halo that can be traced by absorption-line measurements, are believed to play a crucial role in the overall matter cycle in our Galaxy. Over the last decades, the properties of these halo structures and their connection to the local circumgalactic and intergalactic medium (CGM and IGM, respectively) have been investigated in great detail by many different groups. So far it remains unclear, however, to what extent the results of these studies can be transferred to other galaxies in the local Universe. In this thesis, we study the absorption properties of Galactic HVCs and compare the HVC absorption characteristics with those of intervening QSO absorption-line systems at low redshift. The goal of this project is to improve our understanding of the spatial extent and physical conditions of gaseous galaxy halos in the local Universe. In the first part of the thesis we use HST /STIS ultraviolet spectra of more than 40 extragalactic background sources to statistically analyze the absorption properties of the HVCs in the Galactic halo. We determine fundamental absorption line parameters including covering fractions of different weakly/intermediately/highly ionized metals with a particular focus on SiII and MgII. Due to the similarity in the ionization properties of SiII and MgII, we are able to estimate the contribution of HVC-like halo structures to the cross section of intervening strong MgII absorbers at z = 0. Our study implies that only the most massive HVCs would be regarded as strong MgII absorbers, if the Milky Way halo would be seen as a QSO absorption line system from an exterior vantage point. Combining the observed absorption-cross section of Galactic HVCs with the well-known number density of intervening strong MgII absorbers at z = 0, we conclude that the contribution of infalling gas clouds (i.e., HVC analogs) in the halos of Milky Way-type galaxies to the cross section of strong MgII absorbers is 34\%. This result indicates that only about one third of the strong MgII absorption can be associated with HVC analogs around other galaxies, while the majority of the strong MgII systems possibly is related to galaxy outflows and winds. The second part of this thesis focuses on the properties of intervening metal absorbers at low redshift. The analysis of the frequency and physical conditions of intervening metal systems in QSO spectra and their relation to nearby galaxies offers new insights into the typical conditions of gaseous galaxy halos. One major aspect in our study was to regard intervening metal systems as possible HVC analogs. We perform a detailed analysis of absorption line properties and line statistics for 57 metal absorbers along 78 QSO sightlines using newly-obtained ultraviolet spectra obtained with HST /COS. We find clear evidence for bimodal distribution in the HI column density in the absorbers, a trend that we interpret as sign for two different classes of absorption systems (with HVC analogs at the high-column density end). With the help of the strong transitions of SiII λ1260, SiIII λ1206, and CIII λ977 we have set up Cloudy photoionization models to estimate the local ionization conditions, gas densities, and metallicities. We find that the intervening absorption systems studied by us have, on average, similar physical conditions as Galactic HVC absorbers, providing evidence that many of them represent HVC analogs in the vicinity of other galaxies. We therefore determine typical halo sizes for SiII, SiIII, and CIII for L = 0.01L∗ and L = 0.05L∗ galaxies. Based on the covering fractions of the different ions in the Galactic halo, we find that, for example, the typical halo size for SiIII is ∼ 160 kpc for L = 0.05L∗ galaxies. We test the plausibility of this result by searching for known galaxies close to the QSO sightlines and at similar redshifts as the absorbers. We find that more than 34\% of the measured SiIII absorbers have galaxies associated with them, with the majority of the absorbers indeed being at impact parameters ρ ≤160 kpc.}, language = {en} } @phdthesis{Kruegel2014, author = {Kr{\"u}gel, Andr{\´e}}, title = {Eye movement control during reading : factors and principles of computing the word center for saccade planning}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72599}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Reading is a complex cognitive task based on the analyses of visual stimuli. Due to the physiology of the eye, only a small number of letters around the fixation position can be extracted with high visual acuity, while the visibility of words and letters outside this so-called foveal region quickly drops with increasing eccentricity. As a consequence, saccadic eye movements are needed to repeatedly shift the fovea to new words for visual word identification during reading. Moreover, even within a foveated word fixation positions near the word center are superior to other fixation positions for efficient word recognition (O'Regan, 1981; Brysbaert, Vitu, and Schroyens, 1996). Thus, most reading theories assume that readers aim specifically at word centers during reading (for a review see Reichle, Rayner, \& Pollatsek, 2003). However, saccades' landing positions within words during reading are in fact systematically modulated by the distance of the launch site from the word center (McConkie, Kerr, Reddix, \& Zola, 1988). In general, it is largely unknown how readers identify the center of upcoming target words and there is no computational model of the sensorimotor translation of the decision for a target word into spatial word center coordinates. Here we present a series of three studies which aim at advancing the current knowledge about the computation of saccade target coordinates during saccade planning in reading. Based on a large corpus analyses, we firstly identified word skipping as a further factor beyond the launch-site distance with a likewise systematic and surprisingly large effect on within-word landing positions. Most importantly, we found that the end points of saccades after skipped word are shifted two and more letters to the left as compared to one-step saccades (i.e., from word N to word N+1) with equal launch-site distances. Then we present evidence from a single saccade experiment suggesting that the word-skipping effect results from highly automatic low-level perceptual processes, which are essentially based on the localization of blank spaces between words. Finally, in the third part, we present a Bayesian model of the computation of the word center from primary sensory measurements of inter-word spaces. We demonstrate that the model simultaneously accounts for launch-site and saccade-type contingent modulations of within-word landing positions in reading. Our results show that the spatial saccade target during reading is the result of complex estimations of the word center based on incomplete sensory information, which also leads to specific systematic deviations of saccades' landing positions from the word center. Our results have important implications for current reading models and experimental reading research.}, language = {en} } @phdthesis{Lorey2014, author = {Lorey, Johannes}, title = {What's in a query : analyzing, predicting, and managing linked data access}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72312}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {The term Linked Data refers to connected information sources comprising structured data about a wide range of topics and for a multitude of applications. In recent years, the conceptional and technical foundations of Linked Data have been formalized and refined. To this end, well-known technologies have been established, such as the Resource Description Framework (RDF) as a Linked Data model or the SPARQL Protocol and RDF Query Language (SPARQL) for retrieving this information. Whereas most research has been conducted in the area of generating and publishing Linked Data, this thesis presents novel approaches for improved management. In particular, we illustrate new methods for analyzing and processing SPARQL queries. Here, we present two algorithms suitable for identifying structural relationships between these queries. Both algorithms are applied to a large number of real-world requests to evaluate the performance of the approaches and the quality of their results. Based on this, we introduce different strategies enabling optimized access of Linked Data sources. We demonstrate how the presented approach facilitates effective utilization of SPARQL endpoints by prefetching results relevant for multiple subsequent requests. Furthermore, we contribute a set of metrics for determining technical characteristics of such knowledge bases. To this end, we devise practical heuristics and validate them through thorough analysis of real-world data sources. We discuss the findings and evaluate their impact on utilizing the endpoints. Moreover, we detail the adoption of a scalable infrastructure for improving Linked Data discovery and consumption. As we outline in an exemplary use case, this platform is eligible both for processing and provisioning the corresponding information.}, language = {en} } @phdthesis{Lotkowska2014, author = {Lotkowska, Magda Ewa}, title = {Functional analysis of MYB112 transcription factor in the model plant Arabidopsis thaliana}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72131}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Transcription factors (TFs) are ubiquitous gene expression regulators and play essential roles in almost all biological processes. This Ph.D. project is primarily focused on the functional characterisation of MYB112 - a member of the R2R3-MYB TF family from the model plant Arabidopsis thaliana. This gene was selected due to its increased expression during senescence based on previous qRT-PCR expression profiling experiments of 1880 TFs in Arabidopsis leaves at three developmental stages (15 mm leaf, 30 mm leaf and 20\% yellowing leaf). MYB112 promoter GUS fusion lines were generated to further investigate the expression pattern of MYB112. Employing transgenic approaches in combination with metabolomics and transcriptomics we demonstrate that MYB112 exerts a major role in regulation of plant flavonoid metabolism. We report enhanced and impaired anthocyanin accumulation in MYB112 overexpressors and MYB112-deficient mutants, respectively. Expression profiling reveals that MYB112 acts as a positive regulator of the transcription factor PAP1 leading to increased anthocyanin biosynthesis, and as a negative regulator of MYB12 and MYB111, which both control flavonol biosynthesis. We also identify MYB112 early responsive genes using a combination of several approaches. These include gene expression profiling (Affymetrix ATH1 micro-arrays and qRT-PCR) and transactivation assays in leaf mesophyll cell protoplasts. We show that MYB112 binds to an 8-bp DNA fragment containing the core sequence (A/T/G)(A/C)CC(A/T)(A/G/T)(A/C)(T/C). By electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation coupled to qPCR (ChIP-qPCR) we demonstrate that MYB112 binds in vitro and in vivo to MYB7 and MYB32 promoters revealing them as direct downstream target genes. MYB TFs were previously reported to play an important role in controlling flavonoid biosynthesis in plants. Many factors acting upstream of the anthocyanin biosynthesis pathway show enhanced expression levels during nitrogen limitation, or elevated sucrose content. In addition to the mentioned conditions, other environmental parameters including salinity or high light stress may trigger anthocyanin accumulation. In contrast to several other MYB TFs affecting anthocyanin biosynthesis pathway genes, MYB112 expression is not controlled by nitrogen limitation, or carbon excess, but rather is stimulated by salinity and high light stress. Thus, MYB112 constitutes a previously uncharacterised regulatory factor that modifies anthocyanin accumulation under conditions of abiotic stress.}, language = {en} } @phdthesis{Metzner2014, author = {Metzner, Christiane}, title = {Freiwilligenmanagement als Instrument zur F{\"o}rderung B{\"u}rgerschaftlichen Engagements in Nonprofit-Organisationen}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72180}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Diese Arbeit untersucht, was passiert, wenn in Non-Profit-Organisation (NPO) der Anspruch des B{\"u}rgerschaftlichen Engagements auf Praktiken des Freiwilligenmanagements trifft. Ausgangspunkt dieser Fragestellung ist eine doppelte Diagnose: Zum einen setzen NPOs aufgrund mehrerer Faktoren - u.a. Ressourcenknappheit, Wettbewerb und Nachahmungseffekten - vermehrt auf Freiwilligenmanagement. Mit dieser von der BWL inspirierten, aber f{\"u}r NPO entwickelten Personalf{\"u}hrungsmethode wollen sie mehr und bessere Freiwillige gewinnen und deren Einsatz effizienter strukturieren. Zum anderen haben sich gleichzeitig viele NPO dem Ziel des b{\"u}rgerschaftlichen Engagements verschrieben. Damit reagieren sie auf den aus Politik und Wissenschaft zu vernehmenden Anspruch, die Zivilgesellschaft m{\"o}ge die knappen Kassen der {\"o}ffentlichen Hand kompensieren und das wachsende Partizipationsbed{\"u}rfnis weiter Teile der Bev{\"o}lkerung durch eine neue Kultur der Teilhabe der B{\"u}rgerinnen und B{\"u}rger befriedigen. Bei n{\"a}herer Betrachtung zeigt sich jedoch: W{\"a}hrend Freiwilligenmanagement einer {\"o}konomischen Handlungslogik folgt, ist b{\"u}rgerschaftliches Engagement Ausdruck einer Handlungslogik der Zivilgesellschaft. Beide sind unter gegenw{\"a}rtigen Bedingungen weder theoretisch noch praktisch miteinander vereinbar. Um beide Entwicklungen miteinander zu vers{\"o}hnen, muss Freiwilligenmanagement unter dem Banner des B{\"u}rgerschaftlichen neu gedacht werden. Dieses Argument unterf{\"u}ttert die Arbeit sowohl theoretisch und empirisch. Der Theorieteil gliedert sich in drei Teile. Zun{\"a}chst wird der Begriff der NPO n{\"a}her eingegrenzt. Dazu wird die bestehende Literatur zum Dritten Sektor und Non-Profit-Organisationen zu einem operationalisierbaren Begriff von NPO kondensiert. Daran anschließend werden aktuelle Trends im Feld der NPO identifiziert, die zeigen, dass NPO tats{\"a}chlich oft von widerstreitenden Handlungslogiken gekennzeichnet sind, darunter eine {\"o}konomische und eine b{\"u}rgerschaftliche. Die beiden folgenden Kapitel untersuchen dann jeweils eine der beiden Logiken. Zun{\"a}chst wird das Leitbild des b{\"u}rgerschaftlichen Engagements als Ausdruck einer zivilgesellschaftlichen Handlungslogik n{\"a}her definiert. Dabei zeigt sich, dass dieser Begriff oft sehr unscharf verwendet wird. Daher greift die Arbeit auf die politiktheoretische Diskussion um Zivil- und B{\"u}rgergesellschaft auf und schmiedet daraus eine qualifizierte Definition von b{\"u}rgerschaftlichem Engagement, die sich maßgeblich am Ideal von gesellschaftlich-politischer Partizipation und b{\"u}rgerschaftlicher Kompetenz orientiert. Dem wird im dritten und letzten Kapitel des Theorieteils die {\"o}konomische Handlungslogik in Form der Theorie des Freiwilligenmanagements gegen{\"u}bergestellt. Bei der Darstellung zeigt sich schnell, dass dessen Grundprinzipien - anders als oft vorgebracht - mit den qualifizierten Idealen von Partizipation und Konkurrenz im Konflikt stehen. In der empirischen Analyse wird dann in den 8 Interviews den Widerspr{\"u}chen zwischen b{\"u}rgerschaftlichem Engagement und Freiwilligenmanagement in der Praxis nachgegangen. Die Ergebnisse dieser Untersuchung lassen sich in 5 Punkten zusammenfassen: 1. Freiwilligenmanagement orientiert sich erstens im wesentlichen an einer Zahl: Dem Zugewinn oder Verlust von freiwilliger Arbeit. 2. Freiwilligenmanagement installiert ein umfassendes System der Selektion von „passenden" Freiwilligen. 3. Positiv hervorzuheben ist die institutionalisierte Ansprechbarkeit, die im Rahmen von Freiwilligenmanagement in NPO Einzug erh{\"a}lt. 4. Freiwilligenmanagement ist eng mit dem Anspruch verbunden, die Arbeit der Freiwilligen zu kontrollieren. Der Eigensinn des Engagements, die Notwendigkeit von Spielr{\"a}umen, die M{\"o}glichkeit des Ausprobierens oder der Anspruch der Freiwilligen, an Entscheidungen zu partizipieren bzw. gar selbstorganisiert und -verantwortlich zu handeln, r{\"u}ckt dabei in den Hintergrund. 5. In den Interviews wird eine starke {\"O}konomisierung des Engagements sichtbar. Freiwillige werden als Ressource betrachtet, ihr Engagement als „Zeitspende" statistisch erfasst, ihre (Dienst-)Leistung monet{\"a}r bewertet. Im Zuge dessen erh{\"a}lt auch der Managerialism verst{\"a}rkt Einfluss auf die Arbeit in NPO und begr{\"u}ndet ein stark hierarchisches Verh{\"a}ltnis: W{\"a}hrend die Freiwilligenmangerin aktiv handelt, wird die freiwillig Engagierte zum Objekt von Management-Techniken. Dass dies dem Anspruch der Partizipation entgegenl{\"a}uft, ergibt sich dabei von selbst. Angesichts dieser Diagnose, dass real-existierendes Freiwilligenmanagement nicht mit dem Ideal des b{\"u}rgerschaftlichen Engagement im engeren Sinne zusammenpasst, formuliert das Fazit Vorschl{\"a}ge f{\"u}r ein b{\"u}rgerschaftlich orientiertes, engagement-sensibles Freiwilligenmanagement.
}, language = {de} } @phdthesis{Muksin2014, author = {Muksin, Umar}, title = {A fault-controlled geothermal system in Tarutung (North Sumatra, Indonesia)investigated by seismological analysis}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72065}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {The seismic structure (Vp, Vp/Vs, and Qp anomalies) contributes to the physical properties and the lithology of rocks and possible fluid distribution in the region. The Vp model images the geometry of the Tarutung and the Sarulla basins. Both basins have a depth of around 2.0 km. High Vp/Vs and high attenuation (low Qp) anomalies are observed along the Sarulla graben associated with a weak zone caused by volcanic activities along the graben. Low Vp/Vs and low conductivity anomalies are found in the west of the Tarutung basin. This anomaly is interpreted as dry, compact, and rigid granitic rock in the region as also found by geological observations. Low Vp, high Vp/Vs and low Qp anomalies are found at the east of the Tarutung basin which appear to be associated with the three big geothermal manifestations in Sipoholon, Hutabarat, and Panabungan area. These anomalies are connected with high Vp/Vs and low Qp anomalies below the Tarutung basin at depth of around 3 - 10 km. This suggests that these geothermal manifestations are fed by the same source of the hot fluid below the Tarutung basin. The hot fluids from below the Tarutung basin propagate to the more dilatational and more permeable zone in the northeast. Granite found in the west of the Tarutung basin could also be abundant underneath the basin at a certain depth so that it prevents the hot fluid to be transported directly to the Tarutung basin. High seismic attenuation and low Vp/Vs anomalies are found in the southwest of the Tarutung basin below the Martimbang volcano. These anomalies are associated with hot rock below the volcano without or with less amount of partial melting. There is no indication that the volcano controls the geothermal system around the Tarutung basin. The geothermal resources around the Tarutung basin is a fault-controlled system as a result of deep circulation of fluids. Outside of the basin, the seismicity delineation and the focal mechanism correlate with the shape and the characteristics of the strike-slip Sumatran fault. Within the Tarutung basin, the seismicity is distributed more broadly which coincides with the margin of the basin. An extensional duplex system in the Tarutung basin is derived from the seismicity and focal mechanism analysis which is also consistent with the geological observations. The vertical distribution of the seismicity suggests the presence of a negative flower structure within the Tarutung basin.}, language = {de} } @phdthesis{Radeff2014, author = {Radeff, Giuditta}, title = {Geohistory of the Central Anatolian Plateau southern margin (southern Turkey)}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71865}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {The Adana Basin of southern Turkey, situated at the SE margin of the Central Anatolian Plateau is ideally located to record Neogene topographic and tectonic changes in the easternmost Mediterranean realm. Using industry seismic reflection data we correlate 34 seismic profiles with corresponding exposed units in the Adana Basin. The time-depth conversion of the interpreted seismic profiles allows us to reconstruct the subsidence curve of the Adana Basin and to outline the occurrence of a major increase in both subsidence and sedimentation rates at 5.45 - 5.33 Ma, leading to the deposition of almost 1500 km3 of conglomerates and marls. Our provenance analysis of the conglomerates reveals that most of the sediment is derived from and north of the SE margin of the Central Anatolian Plateau. A comparison of these results with the composition of recent conglomerates and the present drainage basins indicates major changes between late Messinian and present-day source areas. We suggest that these changes in source areas result of uplift and ensuing erosion of the SE margin of the plateau. This hypothesis is supported by the comparison of the Adana Basin subsidence curve with the subsidence curve of the Mut Basin, a mainly Neogene basin located on top of the Central Anatolian Plateau southern margin, showing that the Adana Basin subsidence event is coeval with an uplift episode of the plateau southern margin. The collection of several fault measurements in the Adana region show different deformation styles for the NW and SE margins of the Adana Basin. The weakly seismic NW portion of the basin is characterized by extensional and transtensional structures cutting Neogene deposits, likely accomodating the differential uplift occurring between the basin and the SE margin of the plateau. We interpret the tectonic evolution of the southern flank of the Central Anatolian Plateau and the coeval subsidence and sedimentation in the Adana Basin to be related to deep lithospheric processes, particularly lithospheric delamination and slab break-off.}, language = {en} } @phdthesis{RoggeSolti2014, author = {Rogge-Solti, Andreas}, title = {Probabilistic Estimation of Unobserved Process Events}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70426}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Organizations try to gain competitive advantages, and to increase customer satisfaction. To ensure the quality and efficiency of their business processes, they perform business process management. An important part of process management that happens on the daily operational level is process controlling. A prerequisite of controlling is process monitoring, i.e., keeping track of the performed activities in running process instances. Only by process monitoring can business analysts detect delays and react to deviations from the expected or guaranteed performance of a process instance. To enable monitoring, process events need to be collected from the process environment. When a business process is orchestrated by a process execution engine, monitoring is available for all orchestrated process activities. Many business processes, however, do not lend themselves to automatic orchestration, e.g., because of required freedom of action. This situation is often encountered in hospitals, where most business processes are manually enacted. Hence, in practice it is often inefficient or infeasible to document and monitor every process activity. Additionally, manual process execution and documentation is prone to errors, e.g., documentation of activities can be forgotten. Thus, organizations face the challenge of process events that occur, but are not observed by the monitoring environment. These unobserved process events can serve as basis for operational process decisions, even without exact knowledge of when they happened or when they will happen. An exemplary decision is whether to invest more resources to manage timely completion of a case, anticipating that the process end event will occur too late. This thesis offers means to reason about unobserved process events in a probabilistic way. We address decisive questions of process managers (e.g., "when will the case be finished?", or "when did we perform the activity that we forgot to document?") in this thesis. As main contribution, we introduce an advanced probabilistic model to business process management that is based on a stochastic variant of Petri nets. We present a holistic approach to use the model effectively along the business process lifecycle. Therefore, we provide techniques to discover such models from historical observations, to predict the termination time of processes, and to ensure quality by missing data management. We propose mechanisms to optimize configuration for monitoring and prediction, i.e., to offer guidance in selecting important activities to monitor. An implementation is provided as a proof of concept. For evaluation, we compare the accuracy of the approach with that of state-of-the-art approaches using real process data of a hospital. Additionally, we show its more general applicability in other domains by applying the approach on process data from logistics and finance.}, language = {en} } @phdthesis{Sarrar2014, author = {Sarrar, Lea}, title = {Kognitive Funktionen bei adoleszenten Patienten mit Anorexia nervosa und unipolaren Affektiven St{\"o}rungen}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72439}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Anorexia nervosa und unipolare Affektive St{\"o}rungen stellen h{\"a}ufige und schwerwiegende kinder- und jugendpsychiatrische St{\"o}rungsbilder dar, deren Pathogenese bislang nicht vollst{\"a}ndig entschl{\"u}sselt ist. Verschiedene Studien zeigen bei erwachsenen Patienten gravierende Auff{\"a}lligkeiten in den kognitiven Funktionen. Dahingegen scheinen bei adoleszenten Patienten lediglich leichtere Einschr{\"a}nkungen in den kognitiven Funktionen vorzuliegen. Die Pr{\"a}valenz der Anorexia nervosa und unipolaren Affektiven St{\"o}rung ist mit Beginn der Adoleszenz deutlich erh{\"o}ht. Es ist anzunehmen, dass kognitive Dysfunktionen, die sich bereits in diesem Alter abzeichnen, den weiteren Krankheitsverlauf bis in das Erwachsenenalter, die Behandlungsergebnisse und die Prognose maßgeblich beeintr{\"a}chtigen k{\"o}nnten. Zudem ist von einem h{\"o}heren Chronifizierungsrisiko auszugehen. In der vorliegenden Arbeit wurden daher kognitive Funktionen bei adoleszenten Patientinnen mit Anorexia nervosa sowie Patienten mit unipolaren Affektiven St{\"o}rungen untersucht. Die {\"U}berpr{\"u}fung der kognitiven Funktionen bei Patientinnen mit Anorexia nervosa erfolgte vor und nach Gewichtszunahme. Weiterhin wurden zugrundeliegende biologische Mechanismen {\"u}berpr{\"u}ft. Zudem wurde die Spezifit{\"a}t kognitiver Dysfunktionen f{\"u}r beide St{\"o}rungsbilder untersucht und bei Patienten mit unipolaren Affektiven St{\"o}rungen geschlechtsbezogene Unterschiede exploriert. Insgesamt gingen 47 Patientinnen mit Anorexia nervosa (mittleres Alter 16,3 + 1,6 Jahre), 39 Patienten mit unipolaren Affektiven St{\"o}rungen (mittleres Alter 15,5 + 1,3 Jahre) sowie 78 Kontrollprobanden (mittleres Alter 16,5 + 1,3 Jahre) in die Untersuchung ein. S{\"a}mtliche Studienteilnehmer durchliefen eine neuropsychologische Testbatterie, bestehend aus Verfahren zur {\"U}berpr{\"u}fung der kognitiven Flexibilit{\"a}t sowie visuellen und psychomotorischen Verarbeitungsgeschwindigkeit. Neben einem Intelligenzscreening wurden zudem das Ausmaß der depressiven Symptomatik sowie die allgemeine psychische Belastung erfasst. Die Ergebnisse legen nahe, dass bei adoleszenten Patientinnen mit Anorexia nervosa, sowohl im akut untergewichtigen Zustand als auch nach Gewichtszunahme, lediglich milde Beeintr{\"a}chtigungen in den kognitiven Funktionen vorliegen. Im akut untergewichtigen Zustand offenbarten sich deutliche Zusammenh{\"a}nge zwischen dem appetitregulierenden Peptid Agouti-related Protein und kognitiver Flexibilit{\"a}t, nicht jedoch zwischen Agouti-related Protein und visueller oder psychomotorischer Verarbeitungsgeschwindigkeit. Bei dem Vergleich von Anorexia nervosa und unipolaren Affektiven St{\"o}rungen pr{\"a}dizierte die Zugeh{\"o}rigkeit zu der Patientengruppe Anorexia nervosa ein Risiko f{\"u}r das Vorliegen kognitiver Dysfunktionen. Es zeigte sich zudem, dass adoleszente Patienten mit unipolaren Affektiven St{\"o}rungen lediglich in der psychomotorischen Verarbeitungsgeschwindigkeit tendenziell schw{\"a}chere Leistungen offenbarten als gesunde Kontrollprobanden. Es ergab sich jedoch ein genereller geschlechtsbezogener Vorteil f{\"u}r weibliche Probanden in der visuellen und psychomotorischen Verarbeitungsgeschwindigkeit. Die vorliegenden Befunde unterstreichen die Notwendigkeit der {\"U}berpr{\"u}fung kognitiver Funktionen bei adoleszenten Patienten mit Anorexia nervosa sowie unipolaren Affektiven St{\"o}rungen in der klinischen Routinediagnostik. Die Patienten k{\"o}nnten von spezifischen Therapieprogrammen profitieren, die Beeintr{\"a}chtigungen in den kognitiven Funktionen mildern bzw. pr{\"a}ventiv behandeln.}, language = {de} } @phdthesis{Schmidl2014, author = {Schmidl, Ricarda}, title = {Empirical essays on job search behavior, active labor market policies, and propensity score balancing methods}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71145}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {In Chapter 1 of the dissertation, the role of social networks is analyzed as an important determinant in the search behavior of the unemployed. Based on the hypothesis that the unemployed generate information on vacancies through their social network, search theory predicts that individuals with large social networks should experience an increased productivity of informal search, and reduce their search in formal channels. Due to the higher productivity of search, unemployed with a larger network are also expected to have a higher reservation wage than unemployed with a small network. The model-theoretic predictions are tested and confirmed empirically. It is found that the search behavior of unemployed is significantly affected by the presence of social contacts, with larger networks implying a stronger substitution away from formal search channels towards informal channels. The substitution is particularly pronounced for passive formal search methods, i.e., search methods that generate rather non-specific types of job offer information at low relative cost. We also find small but significant positive effects of an increase of the network size on the reservation wage. These results have important implications on the analysis of the job search monitoring or counseling measures that are usually targeted at formal search only. Chapter 2 of the dissertation addresses the labor market effects of vacancy information during the early stages of unemployment. The outcomes considered are the speed of exit from unemployment, the effects on the quality of employment and the short-and medium-term effects on active labor market program (ALMP) participation. It is found that vacancy information significantly increases the speed of entry into employment; at the same time the probability to participate in ALMP is significantly reduced. Whereas the long-term reduction in the ALMP arises in consequence of the earlier exit from unemployment, we also observe a short-run decrease for some labor market groups which suggest that caseworker use high and low intensity activation measures interchangeably which is clearly questionable from an efficiency point of view. For unemployed who find a job through vacancy information we observe a small negative effect on the weekly number of hours worked. In Chapter 3, the long-term effects of participation in ALMP are assessed for unemployed youth under 25 years of age. Complementary to the analysis in Chapter 2, the effects of participation in time- and cost-intensive measures of active labor market policies are examined. In particular we study the effects of job creation schemes, wage subsidies, short-and long-term training measures and measures to promote the participation in vocational training. The outcome variables of interest are the probability to be in regular employment, and participation in further education during the 60 months following program entry. The analysis shows that all programs, except job creation schemes have positive and long-term effects on the employment probability of youth. In the short-run only short-term training measures generate positive effects, as long-term training programs and wage subsidies exhibit significant locking-in'' effects. Measures to promote vocational training are found to increase the probability of attending education and training significantly, whereas all other programs have either no or a negative effect on training participation. Effect heterogeneity with respect to the pre-treatment level education shows that young people with higher pre-treatment educational levels benefit more from participation most programs. However, for longer-term wage subsidies we also find strong positive effects for young people with low initial education levels. The relative benefit of training measures is higher in West than in East Germany. In the evaluation studies of Chapters 2 and 3 semi-parametric balancing methods of Propensity Score Matching (PSM) and Inverse Probability Weighting (IPW) are used to eliminate the effects of counfounding factors that influence both the treatment participation as well as the outcome variable of interest, and to establish a causal relation between program participation and outcome differences. While PSM and IPW are intuitive and methodologically attractive as they do not require parametric assumptions, the practical implementation may become quite challenging due to their sensitivity to various data features. Given the importance of these methods in the evaluation literature, and the vast number of recent methodological contributions in this field, Chapter 4 aims to reduce the knowledge gap between the methodological and applied literature by summarizing new findings of the empirical and statistical literature and practical guidelines for future applied research. In contrast to previous publications this study does not only focus on the estimation of causal effects, but stresses that the balancing challenge can and should be discussed independent of question of causal identification of treatment effects on most empirical applications. Following a brief outline of the practical implementation steps required for PSM and IPW, these steps are presented in detail chronologically, outlining practical advice for each step. Subsequently, the topics of effect estimation, inference, sensitivity analysis and the combination with parametric estimation methods are discussed. Finally, new extensions of the methodology and avenues for future research are presented.}, language = {en} } @phdthesis{Serrano2014, author = {Serrano, Paloma}, title = {Methanogens from Siberian permafrost as models for life on Mars : response to simulated martian conditions and biosignature characterization}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72299}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Mars is one of the best candidates among planetary bodies for supporting life. The presence of water in the form of ice and atmospheric vapour together with the availability of biogenic elements and energy are indicators of the possibility of hosting life as we know it. The occurrence of permanently frozen ground - permafrost, is a common phenomenon on Mars and it shows multiple morphological analogies with terrestrial permafrost. Despite the extreme inhospitable conditions, highly diverse microbial communities inhabit terrestrial permafrost in large numbers. Among these are methanogenic archaea, which are anaerobic chemotrophic microorganisms that meet many of the metabolic and physiological requirements for survival on the martian subsurface. Moreover, methanogens from Siberian permafrost are extremely resistant against different types of physiological stresses as well as simulated martian thermo-physical and subsurface conditions, making them promising model organisms for potential life on Mars. The main aims of this investigation are to assess the survival of methanogenic archaea under Mars conditions, focusing on methanogens from Siberian permafrost, and to characterize their biosignatures by means of Raman spectroscopy, a powerful technology for microbial identification that will be used in the ExoMars mission. For this purpose, methanogens from Siberian permafrost and non-permafrost habitats were subjected to simulated martian desiccation by exposure to an ultra-low subfreezing temperature (-80ºC) and to Mars regolith (S-MRS and P-MRS) and atmospheric analogues. They were also exposed to different concentrations of perchlorate, a strong oxidant found in martian soils. Moreover, the biosignatures of methanogens were characterized at the single-cell level using confocal Raman microspectroscopy (CRM). The results showed survival and methane production in all methanogenic strains under simulated martian desiccation. After exposure to subfreezing temperatures, Siberian permafrost strains had a faster metabolic recovery, whereas the membranes of non-permafrost methanogens remained intact to a greater extent. The strain Methanosarcina soligelidi SMA-21 from Siberian permafrost showed significantly higher methane production rates than all other strains after the exposure to martian soil and atmospheric analogues, and all strains survived the presence of perchlorate at the concentration on Mars. Furthermore, CRM analyses revealed remarkable differences in the overall chemical composition of permafrost and non-permafrost strains of methanogens, regardless of their phylogenetic relationship. The convergence of the chemical composition in non-sister permafrost strains may be the consequence of adaptations to the environment, and could explain their greater resistance compared to the non-permafrost strains. As part of this study, Raman spectroscopy was evaluated as an analytical technique for remote detection of methanogens embedded in a mineral matrix. This thesis contributes to the understanding of the survival limits of methanogenic archaea under simulated martian conditions to further assess the hypothetical existence of life similar to methanogens on the martian subsurface. In addition, the overall chemical composition of methanogens was characterized for the first time by means of confocal Raman microspectroscopy, with potential implications for astrobiological research.}, language = {en} } @phdthesis{Tenenboim2014, author = {Tenenboim, Yehezkel}, title = {Characterization of a Chlamydomonas protein involved in cell division and autophagy}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-70650}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {The contractile vacuole (CV) is an osmoregulatory organelle found exclusively in algae and protists. In addition to expelling excessive water out of the cell, it also expels ions and other metabolites and thereby contributes to the cell's metabolic homeostasis. The interest in the CV reaches beyond its immediate cellular roles. The CV's function is tightly related to basic cellular processes such as membrane dynamics and vesicle budding and fusion; several physiological processes in animals, such as synaptic neurotransmission and blood filtration in the kidney, are related to the CV's function; and several pathogens, such as the causative agents of sleeping sickness, possess CVs, which may serve as pharmacological targets. The green alga Chlamydomonas reinhardtii has two CVs. They are the smallest known CVs in nature, and they remain relatively untouched in the CV-related literature. Many genes that have been shown to be related to the CV in other organisms have close homologues in C. reinhardtii. We attempted to silence some of these genes and observe the effect on the CV. One of our genes, VMP1, caused striking, severe phenotypes when silenced. Cells exhibited defective cytokinesis and aberrant morphologies. The CV, incidentally, remained unscathed. In addition, mutant cells showed some evidence of disrupted autophagy. Several important regulators of the cell cycle as well as autophagy were found to be underexpressed in the mutant. Lipidomic analysis revealed many meaningful changes between wild-type and mutant cells, reinforcing the compromised-autophagy observation. VMP1 is a singular protein, with homologues in numerous eukaryotic organisms (aside from fungi), but usually with no relatives in each particular genome. Since its first characterization in 2002 it has been associated with several cellular processes and functions, namely autophagy, programmed cell-death, secretion, cell adhesion, and organelle biogenesis. It has been implicated in several human diseases: pancreatitis, diabetes, and several types of cancer. Our results reiterate some of the observations in VMP1's six reported homologues, but, importantly, show for the first time an involvement of this protein in cell division. The mechanisms underlying this involvement in Chlamydomonas, as well as other key aspects, such as VMP1's subcellular localization and interaction partners, still await elucidation.}, language = {en} } @phdthesis{Tietz2014, author = {Tietz, Marcel}, title = {Europ{\"a}isches Verwaltungsmanagement : Vergleich von Hauptst{\"a}dten neuer und alter Mitgliedsstaaten der EU am Beispiel der B{\"u}rgerdienste}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72171}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Im Rahmen der Dissertation wird die Anwendung und Wirkung von Kernelementen des New Public Management (NPM) am Beispiel der B{\"u}rgerdienste der sechs europ{\"a}ischen Hauptst{\"a}dte Berlin, Br{\"u}ssel, Kopenhagen, Madrid, Prag und Warschau analysiert. Hierbei steht der Vergleich von Hauptst{\"a}dten der MOE-Staaten mit Hauptst{\"a}dten alter EU-Mitgliedsstaaten im Vordergrund. Es wird die folgende Forschungshypothese untersucht: Die Verwaltungen in den Hauptst{\"a}dten der {\"o}stlichen Mitgliedsstaaten der EU haben in Folge der grunds{\"a}tzlichen gesellschaftlichen und politischen Umbr{\"u}che in den 1990er Jahren bedeutend mehr Kernelemente des NPM beim Neuaufbau ihrer {\"o}ffentlichen Verwaltungen eingef{\"u}hrt. Durch den folgerichtigen Aufbau kundenorientierter und moderner Verwaltungen sowie der strikten Anwendung der Kernelemente des New Public Management arbeiten die B{\"u}rgerdienste in den Hauptst{\"a}dten {\"o}stlicher EU-Mitgliedsstaaten effizienter und wirkungsvoller als vergleichbare B{\"u}rgerdienste in den Hauptst{\"a}dten westlicher EU-Mitgliedsstaaten. Zur {\"U}berpr{\"u}fung der Forschungshypothese werden die Vergleichsst{\"a}dte zun{\"a}chst den entsprechenden Rechts- und Verwaltungstraditionen (kontinentaleurop{\"a}isch deutsch, napoleonisch und skandinavisch) zugeordnet und bez{\"u}glich ihrer Ausgangslage zum Aufbau einer modernen Verwaltung (Westeurop{\"a}ische Verwaltung, Wiedervereinigungsverwaltung und Transformations-verwaltung) kategorisiert. Im Anschluss werden die institutionellen Voraussetzungen hinterfragt, was die deskriptive Darstellung der Stadt- und Verwaltungsgeschichte sowie die Untersuchung von organisatorischen Strukturen der B{\"u}rgerdienste, die Anwendung der NPM-Instrumente als auch die Innen- und Außenperspektive des NPM umfasst. Es wird festgestellt, ob und in welcher Form die B{\"u}rgerdienste der Vergleichsst{\"a}dte die Kernelemente des NPM anwenden. Im Anschluss werden die Vergleichsst{\"a}dte bez{\"u}glich der Anwendung der Kernelemente miteinander verglichen, wobei der Fokus auf dem pers{\"o}nlichen Vertriebsweg und der Kundenorientierung liegt. Der folgende Teil der Dissertation befasst sich mit dem Output der B{\"u}rgerdienste, der auf operative Resultate untersucht und verglichen wird. Hierbei stellt sich insbesondere die Frage nach den Leistungsmengen und der Produktivit{\"a}t des Outputs. Es werden aber auch die Ergebnisse von Verwaltungsprozessen untersucht, insbesondere in Bezug auf die Kundenorientierung. Hierf{\"u}r wird ein Effizienzvergleich der B{\"u}rgerdienste in den Vergleichsst{\"a}dten anhand einer relativen Effizienzmessung und der Free Disposal Hull (FDH)-Methode nach Bouckaert durchgef{\"u}hrt. Es ist eine Konzentration auf popul{\"a}re Dienstleistungen aus dem Portfolio der B{\"u}rgerdienste notwendig. Daher werden die vergleichbaren Dienstleistungen Melde-, Personalausweis-, F{\"u}hrerschein- und Reisepass-angelegenheiten unter Einbeziehung des Vollzeit{\"a}quivalents zur Berechnung der Effizienz der B{\"u}rgerdienste herangezogen. Hierf{\"u}r werden Daten aus den Jahren 2009 bis 2011 genutzt, die teilweise aus verwaltungsinternen Datenbanken stammen. Anschließend wird der Versuch unternommen, den Outcome in die Effizienzanalyse der B{\"u}rgerdienste einfließen zu lassen. In diesem Zusammenhang wird die Anwendbarkeit von verschiedenen erweiterten Best-Practice-Verfahren und auch eine Erweiterung der relativen Effizienzmessung und der FDH-Methode gepr{\"u}ft. Als Gesamtfazit der Dissertation kann festgehalten werden, dass die B{\"u}rgerdienste in den untersuchten Hauptst{\"a}dten der MOE-Staaten nicht mehr Kernelemente des NPM anwenden, als die Hauptst{\"a}dte der westlichen Mitgliedsstaaten der EU. Im Gegenteil wendet Prag deutlich weniger NPM-Instrumente als andere Vergleichsst{\"a}dte an, wohingegen Warschau zwar viele NPM-Instrumente anwendet, jedoch immer von einer westeurop{\"a}ischen Vergleichsstadt {\"u}bertroffen wird. Auch die Hypothese, dass die B{\"u}rgerdienste in den Hauptst{\"a}dten der MOE-Staaten effizienter arbeiten als vergleichbare B{\"u}rgerdienste in den Hauptst{\"a}dten westlicher EU-Mitgliedsstaaten wurde durch die Dissertation entkr{\"a}ftet. Das Gegenteil ist der Fall, da Prag und Warschau im Rahmen des Effizienzvergleichs lediglich durchschnittliche oder schlechte Performances aufweisen. Die aufgestellte Hypothese ist durch die Forschungsergebnisse widerlegt, lediglich das gute Abschneiden der Vergleichsstadt Warschau bei der Anwendungsanalyse kann einen Teil der These im gewissen Umfang best{\"a}tigen.}, language = {de} } @phdthesis{Trost2014, author = {Trost, Gerda}, title = {Poly(A) Polymerase 1 (PAPS1) influences organ size and pathogen response in Arabidopsis thaliana}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-72345}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Polyadenylation of pre-mRNAs is critical for efficient nuclear export, stability, and translation of the mature mRNAs, and thus for gene expression. The bulk of pre-mRNAs are processed by canonical nuclear poly(A) polymerase (PAPS). Both vertebrate and higher-plant genomes encode more than one isoform of this enzyme, and these are coexpressed in different tissues. However, in neither case is it known whether the isoforms fulfill different functions or polyadenylate distinct subsets of pre-mRNAs. This thesis shows that the three canonical nuclear PAPS isoforms in Arabidopsis are functionally specialized owing to their evolutionarily divergent C-terminal domains. A moderate loss-of-function mutant in PAPS1 leads to increase in floral organ size, whereas leaf size is reduced. A strong loss-of-function mutation causes a male gametophytic defect, whereas a weak allele leads to reduced leaf growth. By contrast, plants lacking both PAPS2 and PAPS4 function are viable with wild-type leaf growth. Polyadenylation of SMALL AUXIN UP RNA (SAUR) mRNAs depends specifically on PAPS1 function. The resulting reduction in SAUR activity in paps1 mutants contributes to their reduced leaf growth, providing a causal link between polyadenylation of specific pre-mRNAs by a particular PAPS isoform and plant growth. Additionally, opposite effects of PAPS1 on leaf and flower growth reflect the different identities of these organs. The overgrowth of paps1 mutant petals is due to increased recruitment of founder cells into early organ primordia whereas the reduced leaf size is due to an ectopic pathogen response. This constitutive immune response leads to increased resistance to the biotrophic oomycete Hyaloperonospora arabidopsidis and reflects activation of the salicylic acid-independent signalling pathway downstream of ENHANCED DISEASE SUSCEPTIBILITY1 (EDS1)/PHYTOALEXIN DEFICIENT4 (PAD4). Immune responses are accompanied by intracellular redox changes. Consistent with this, the redox-status of the chloroplast is altered in paps1-1 mutants. The molecular effects of the paps1-1 mutation were analysed using an RNA sequencing approach that distinguishes between long- and short tailed mRNA. The results shown here suggest the existence of an additional layer of regulation in plants and possibly vertebrate gene expression, whereby the relative activities of canonical nuclear PAPS isoforms control de novo synthesized poly(A) tail length and hence expression of specific subsets of mRNAs.}, language = {en} } @phdthesis{Yadavalli2014, author = {Yadavalli, Nataraja Sekhar}, title = {Advances in experimental methods to probe surface relief grating formation mechanism in photosensitive materials}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71213}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {When azobenzene-modified photosensitive polymer films are irradiated with light interference patterns, topographic variations in the film develop that follow the electric field vector distribution resulting in the formation of surface relief grating (SRG). The exact correspondence of the electric field vector orientation in interference pattern in relation to the presence of local topographic minima or maxima of SRG is in general difficult to determine. In my thesis, we have established a systematic procedure to accomplish the correlation between different interference patterns and the topography of SRG. For this, we devise a new setup combining an atomic force microscope and a two-beam interferometer (IIAFM). With this set-up, it is possible to track the topography change in-situ, while at the same time changing polarization and phase of the impinging interference pattern. To validate our results, we have compared two photosensitive materials named in short as PAZO and trimer. This is the first time that an absolute correspondence between the local distribution of electric field vectors of interference pattern and the local topography of the relief grating could be established exhaustively. In addition, using our IIAFM we found that for a certain polarization combination of two orthogonally polarized interfering beams namely SP (↕, ↔) interference pattern, the topography forms SRG with only half the period of the interference patterns. Exploiting this phenomenon we are able to fabricate surface relief structures below diffraction limit with characteristic features measuring only 140 nm, by using far field optics with a wavelength of 491 nm. We have also probed for the stresses induced during the polymer mass transport by placing an ultra-thin gold film on top (5-30 nm). During irradiation, the metal film not only deforms along with the SRG formation, but ruptures in regular and complex manner. The morphology of the cracks differs strongly depending on the electric field distribution in the interference pattern even when the magnitude and the kinetic of the strain are kept constant. This implies a complex local distribution of the opto-mechanical stress along the topography grating. The neutron reflectivity measurements of the metal/polymer interface indicate the penetration of metal layer within the polymer resulting in the formation of bonding layer that confirms the transduction of light induced stresses in the polymer layer to a metal film.}, language = {en} }