@phdthesis{Itonaga2009,
  author    = {Itonaga, Naomi},
  title     = {White storks (Ciconia ciconia) of Eastern Germany: age-dependent breeding ability, and age- and density-dependent effects on dispersal behavior},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-39052},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Dispersal behavior plays an important role for the geographical distribution and population structure of any given species. Individual's fitness, reproductive and competitive ability, and dispersal behavior can be determined by the age of the individual. Age-dependent as well as density-dependent dispersal patterns are common in many bird species. In this thesis, I first present age-dependent breeding ability and natal site fidelity in white storks (Ciconia ciconia); migratory birds breeding in large parts of Europe. I predicted that both the proportion of breeding birds and natal site fidelity increase with the age. After the seventies of the last century, following a steep population decline, a recovery of the white stork population has been observed in many regions in Europe. Increasing population density in the white stork population in Eastern Germany especially after 1983 allowed examining density- as well as age-dependent breeding dispersal patterns. Therefore second, I present whether: young birds show more often and longer breeding dispersal than old birds, and frequency of dispersal events increase with the population density increase, especially in the young storks. Third, I present age- and density-dependent dispersal direction preferences in the give population. I asked whether and how the major spring migration direction interacts with dispersal directions of white storks: in different age, and under different population densities. The proportion of breeding individuals increased in the first 22 years of life and then decreased suggesting, the senescent decay in aging storks. Young storks were more faithful to their natal sites than old storks probably due to their innate migratory direction and distance. Young storks dispersed more frequently than old storks in general, but not for longer distance. Proportion of dispersing individuals increased significantly with increasing population densities indicating, density- dependent dispersal behavior in white storks. Moreover, the finding of a significant interaction effects between the age of dispersing birds and year (1980-2006) suggesting, older birds dispersed more from their previous nest sites over time due to increased competition. Both young and old storks dispersed along their spring migration direction; however, directional preferences were different in young storks and old storks. Young storks tended to settle down before reaching their previous nest sites (leading to the south-eastward dispersal) while old birds tended to keep migrating along the migration direction after reaching their previous nest sites (leading to the north-westward dispersal). Cues triggering dispersal events may be age-dependent. Changes in the dispersal direction over time were observed. Dispersal direction became obscured during the second half of the observation period (1993-2006). Increase in competition may affect dispersal behavior in storks. I discuss the potential role of: age for the observed age-dependent dispersal behavior, and competition for the density dependent dispersal behavior. This Ph.D. thesis contributes significantly to the understanding of population structure and geographical distribution of white storks. Moreover, presented age- and density (competition)-dependent dispersal behavior helps understanding underpinning mechanisms of dispersal behavior in bird species.},
  language  = {en}
}
@phdthesis{Nell2009,
  author    = {Nell, Sandra},
  title     = {Vitamin E und der vesikul{\"a}re Transport : Untersuchungen zu den genregulatorischen Funktionen von Vitamin E mittels Microarray- und real time PCR-Analysen in der Maus und funktionellen in vitro Assays in RBL-2H3 Zellen},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-35710},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Vitamin E wird immer noch als das wichtigste lipophile Antioxidanz in biologischen Membranen betrachtet. In den letzten Jahren hat sich jedoch der Schwerpunkt der Vitamin E-Forschung hin zu den nicht-antioxidativen Funktionen verlagert. Besonderes Interesse gilt dabei dem α-Tocopherol, der h{\"a}ufigsten Vitamin E-Form im Gewebe von S{\"a}ugetieren, und seiner Rolle bei der Regulation der Genexpression. Das Ziel dieser Dissertation war die Untersuchung der genregulatorischen Funktionen von α-Tocoperol und die Identifizierung α-Tocopherol-sensitiver Gene in vivo. Zu diesem Zweck wurden M{\"a}use mit verschiedenen Mengen α-Tocopherol gef{\"u}ttert. Die Analyse der hepatischen Genexpression mit Hilfe von DNA-Microarrays identifizierte 387 α-Tocopherol-sensitive Gene. Funktionelle Clusteranalysen der differentiell exprimierten Gene zeigten einen Einfluss von α-Tocooherol auf zellul{\"a}re Transportprozesse. Besonders solche Gene, die an vesikul{\"a}ren Transportvorg{\"a}ngen beteiligt sind, wurden gr{\"o}ßtenteils durch α-Tocopherol hochreguliert. F{\"u}r Syntaxin 1C, Vesicle-associated membrane protein 1, N-ethylmaleimide-sensitive factor and Syntaxin binding protein 1 konnte eine erh{\"o}hte Expression mittels real time PCR best{\"a}tigt werden. Ein funktioneller Einfluss von α-Tocopherol auf vesikul{\"a}re Transportprozesse konnte mit Hilfe des in vitro β-Hexosaminidase Assays in der sekretorischen Mastzelllinie RBL-2H3 gezeigt werden. Die Inkubation der Zellen mit α-Tocopherol resultierte in einer konzentrationsabh{\"a}ngigen Erh{\"o}hung der PMA/Ionomycin-stimulierten Sekretion der β-Hexosaminidase. Eine erh{\"o}hte Expression ausgew{\"a}hlter Gene, die an der Degranulation beteiligt sind, konnte nicht beobachtet werden. Damit schien ein direkter genregulatorischer Effekt von α-Tocopherol eher unwahrscheinlich. Da eine erh{\"o}hte Sekretion auch mit β-Tocopherol aber nicht mit Trolox, einem hydrophilen Vitamin E-Analogon, gefunden wurde, wurde vermutet, dass α-Tocopherol die Degranulation m{\"o}glicherweise durch seine membranst{\"a}ndige Lokalisation beeinflussen k{\"o}nnte. Die Inkubation der Zellen mit α-Tocopherol resultierte in einer ver{\"a}nderten Verteilung des Gangliosids GM1, einem Lipid raft Marker. Es wird angenommen, dass diese Membranmikrodom{\"a}nen als Plattformen f{\"u}r Signaltransduktionsvorg{\"a}nge fungieren. Ein m{\"o}glicher Einfluss von Vitamin E auf die Rekrutierung/Translokation von Signalproteinen in Membranmikrodom{\"a}nen k{\"o}nnte die beobachteten Effekte erkl{\"a}ren. Eine Rolle von α-Tocopherol im vesikul{\"a}ren Transport k{\"o}nnte nicht nur seine eigene Absorption und seinen Transport beeinflussen, sondern auch eine Erkl{\"a}rung f{\"u}r die bei schwerer Vitamin E-Defizienz auftretenden neuronalen Dysfunktionen bieten. Im zweiten Teil der Arbeit wurde die α-Tocopheroltransferprotein (Ttpa) Knockout-Maus als genetisches Modell f{\"u}r Vitamin E-Defizienz verwendet, um den Effekt von Ttpa auf die Genexpression und die Gewebeverteilung von α-Tocopherol zu analysieren. Ttpa ist ein cytosolisches Protein, das f{\"u}r die selektive Retention von α-Tocopherol in der Leber verantwortlich ist. Die Ttpa-Defizienz resultierte in sehr geringen α-Tocopherol-Konzentrationen im Plasma und den extrahepatischen Geweben. Die Analyse der α-Tocopherol-Gehalte im Gehirn wies auf eine Rolle von Ttpa bei der α-Tocopherol-Aufnahme ins Gehirn hin.},
  language  = {de}
}
@phdthesis{Schmallowsky2009,
  author    = {Schmallowsky, Antje},
  title     = {Visualisierung dynamischer Raumph{\"a}nomene in Geoinformationssystemen},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-41262},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Die visuelle Kommunikation ist eine effiziente Methode, um dynamische Ph{\"a}nomene zu beschreiben. Informationsobjekte pr{\"a}zise wahrzunehmen, einen schnellen Zugriff auf strukturierte und relevante Informationen zu erm{\"o}glichen, erfordert konsistente und nach dem formalen Minimalprinzip konzipierte Analyse- und Darstellungsmethoden. Dynamische Raumph{\"a}nomene in Geoinformationssystemen k{\"o}nnen durch den Mangel an konzeptionellen Optimierungsanpassungen aufgrund ihrer statischen Systemstruktur nur bedingt die Informationen von Raum und Zeit modellieren. Die Forschung in dieser Arbeit ist daher auf drei interdisziplin{\"a}re Ans{\"a}tze fokussiert. Der erste Ansatz stellt eine echtzeitnahe Datenerfassung dar, die in Geodatenbanken zeitorientiert verwaltet wird. Der zweite Ansatz betrachtet Analyse- und Simulationsmethoden, die das dynamische Verhalten analysieren und prognostizieren. Der dritte Ansatz konzipiert Visualisierungsmethoden, die insbesondere dynamische Prozesse abbilden. Die Symbolisierung der Prozesse passt sich bedarfsweise in Abh{\"a}ngigkeit des Prozessverlaufes und der Interaktion zwischen Datenbanken und Simulationsmodellen den verschiedenen Entwicklungsphasen an. Dynamische Aspekte k{\"o}nnen so mit Hilfe bew{\"a}hrter Funktionen aus der GI-Science zeitnah mit modularen Werkzeugen entwickelt und visualisiert werden. Die Analyse-, Verschneidungs- und Datenverwaltungsfunktionen sollen hierbei als Nutzungs- und Auswertungspotential alternativ zu Methoden statischer Karten dienen. Bedeutend f{\"u}r die zeitliche Komponente ist das Verkn{\"u}pfen neuer Technologien, z. B. die Simulation und Animation, basierend auf einer strukturierten Zeitdatenbank in Verbindung mit statistischen Verfahren. Methodisch werden Modellans{\"a}tze und Visualisierungstechniken entwickelt, die auf den Bereich Verkehr transferiert werden. Verkehrsdynamische Ph{\"a}nomene, die nicht zusammenh{\"a}ngend und umfassend darstellbar sind, werden modular in einer serviceorientierten Architektur separiert, um sie in verschiedenen Ebenen r{\"a}umlich und zeitlich visuell zu pr{\"a}sentieren. Entwicklungen der Vergangenheit und Prognosen der Zukunft werden {\"u}ber verschiedene Berechnungsmethoden modelliert und visuell analysiert. Die Verkn{\"u}pfung einer Mikrosimulation (Abbildung einzelner Fahrzeuge) mit einer netzgesteuerten Makrosimulation (Abbildung eines gesamten Straßennetzes) erm{\"o}glicht eine maßstabsunabh{\"a}ngige Simulation und Visualisierung des Mobilit{\"a}tsverhaltens ohne zeitaufwendige Bewertungsmodellberechnungen. Zuk{\"u}nftig wird die visuelle Analyse raum-zeitlicher Ver{\"a}nderungen f{\"u}r planerische Entscheidungen ein effizientes Mittel sein, um Informationen {\"u}bergreifend verf{\"u}gbar, klar strukturiert und zweckorientiert zur Verf{\"u}gung zu stellen. Der Mehrwert durch visuelle Geoanalysen, die modular in einem System integriert sind, ist das flexible Auswerten von Messdaten nach zeitlichen und r{\"a}umlichen Merkmalen.},
  language  = {de}
}
@phdthesis{Schmidt2009,
  author    = {Schmidt, Antje},
  title     = {Untersuchung des Recyclings Kaede-fusionierter Corticotropin-Releasing-Factor Rezeptoren Typ 1},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-34902},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Aktivierte G-Protein-gekoppelte Rezeptoren (GPCR) werden schnell desensitisiert, internalisiert und anschließend entweder lysosomal degradiert oder zur Plasmamembran (PM) recycelt. Zur Resensitisierung der Zellen tragen neben recycelten auch neusynthetisierte Rezeptoren bei. Die {\"U}berlagerung beider Prozesse erschwert die Untersuchung des Rezeptorrecyclings. In dieser Arbeit sollte mit Hilfe des photokonvertierbaren Fluoreszenzproteins Kaede eine Technik entwickelt werden, mit der es m{\"o}glich ist Recycling- von Neusyntheseprozessen zu trennen und das Recycling von GPCR mikroskopisch in Echtzeit zu beobachten. Als Modellproteine wurden der Vasopressin-1a-Rezeptor V1aR (recycelnder Rezeptor), der Vasopressin-2-Rezeptor V2R (degradierter Rezeptor) und der Corticotropin-Releasing Factor-Rezeptor Typ 1 (CRF1R) verwendet, wobei bei Letzterem untersucht werden sollte, ob er nach Stimulation zur PM zur{\"u}cktransportiert wird. Da Kaede als fluoreszierendes Protein mit den GPCR fusioniert wird, wurde zun{\"a}chst {\"u}berpr{\"u}ft, ob es die Eigenschaften der Rezeptoren ver{\"a}ndert und generell f{\"u}r Transportstudien geeignet ist. Eventuell k{\"o}nnte die bereits publizierte Tetramerisierung von Kaede seine Anwendung verhindern oder erschweren. Mittels Fluoreszenz-Korrelationsspektroskopie konnte gezeigt werden, dass Kaede nicht tetramerisiert, wenn es an ein Membranprotein fusioniert ist. Außerdem konnte in in vitro- und Zellkulturexperimenten belegt werden, dass die native und die photokonvertierte Form von Kaede gleichermaßen stabil sind. Dar{\"u}ber hinaus zeigten Kaede-fusionierte GPCR sowohl in Kolokalisationsstudien als auch in Agonistbindungs- und Rezeptoraktivierungsexperimenten die gleichen Eigenschaften wie CFP- bzw. die unfusionierte Rezeptoren. Lediglich die Expression der Kaede-fusionierten Rezeptoren war geringer. Parallel wurde anhand der bereits publizierten Kaede-Struktur versucht, die Tetramerisierung des Proteins durch den Austausch interagierender Aminos{\"a}uren zu unterbinden. Die eingef{\"u}hrten Mutationen bewirkten aber eine Fehlfaltung des Proteins und damit den Verlust der Fluoreszenz. Da zuvor gezeigt werden konnte, dass Kaede-fusionierte Membranproteine nicht tetramerisieren und nicht die Eigenschaften der fusionierten Proteine ver{\"a}ndern, war monomerisiertes Kaede zur Untersuchung des Rezeptorrecyclings nicht notwendig. Im zweiten Teil der Arbeit wurde mit Hilfe von Kaede-Fusionsproteinen und mikroskopischer Testsysteme das noch unbekannte Recyclingverhalten des CRF1R untersucht. Hierf{\"u}r wurden die Kaede-fusionierten Rezeptoren in eukaryotischen Zellen exprimiert und mit Agonisten internalisiert. Die internalisierten Rezeptoren wurden in Endosomen selektiv mit UV-Strahlung photokonvertiert. Anschließend wurde der Transport der photokonvertierten Form verfolgt. Sowohl beim CRF1R als auch beim V1aR wurden Signale in der PM detektiert, beim V2R hingegen nicht. Dies zeigt, dass es sich beim CRF1R um einen recycelnden Rezeptor handelt. Die als Kontrolle eingesetzten Rezeptoren verhielten sich in diesem Experiment wie erwartet: Der V1aR wurde zur PM zur{\"u}cktransportiert, der V2R nicht. Diese Ergebnisse konnten mit Hilfe biochemischer und durchflusscytometrischer Experimente best{\"a}tigt werden. Die Internalisierung des CRF1R verl{\"a}uft Clathrin-vermittelt in Anwesenheit von β-Arrestin. Je nach Stabilit{\"a}t der β Arrestin-Interaktion unterscheidet man zwei Klassen von Rezeptoren: Klasse A-Rezeptoren interagieren transient mit β Arrestin und k{\"o}nnen recyceln. Im Gegensatz dazu gehen Klasse B-Rezeptoren eine stabile Interaktion mit β Arrestin ein und werden nach Internalisierung degradiert. In mikroskopischen Untersuchungen konnte f{\"u}r die aktivierten CRF1R und V1aR eine Rekrutierung von β Arrestin zur PM und eine transiente Interaktion mit β Arrestin gezeigt werden (Klasse A-Rezeptoren). F{\"u}r den V2R wurde dagegen eine stabile Interaktion mit β Arrestin beobachtet (Klasse B-Rezeptor). Diese Daten st{\"u}tzen die Ergebnisse des Kaede-basierten Recyclingversuchs und zeigen, dass der CRF1R ein recycelnder Rezeptor ist. Ferner wurde untersucht, ob der CRF1R zu den schnell oder langsam recycelnden Rezeptoren z{\"a}hlt. Schnell recycelnde Rezeptoren werden direkt aus fr{\"u}hen Endosomen, langsam recycelnde hingegen {\"u}ber das Trans-Golgi-Netzwerk (TGN) bzw. {\"u}ber Recycling-Endosomen zur PM transportiert. Als Marker f{\"u}r das TGN oder die Recycling-Endosomen wurde Rab11 verwendet. In Kolokalisationsstudien konnte gezeigt werden, dass der CRF1R den langsam recycelnden Rezeptoren zugeordnet werden kann. Zusammenfassend konnte in dieser Arbeit belegt werden, dass Kaede als Fusionspartner f{\"u}r Membranproteine genutzt werden kann um deren Transport in Echtzeit zu studieren. Damit wurde erstmals eine mikroskopische Methode etabliert, die es erlaubt recycelnde von neusynthetisierten Rezeptoren zu unterscheiden. Mit Hilfe dieser Methode war es m{\"o}glich zu zeigen, dass der CRF1R ein recycelnder Rezeptor ist.},
  language  = {de}
}
@phdthesis{Bange2009,
  author    = {Bange, Sebastian},
  title     = {Transient optical and electrical effects in polymeric semiconductors},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-36314},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Classical semiconductor physics has been continuously improving electronic components such as diodes, light-emitting diodes, solar cells and transistors based on highly purified inorganic crystals over the past decades. Organic semiconductors, notably polymeric, are a comparatively young field of research, the first light-emitting diode based on conjugated polymers having been demonstrated in 1990. Polymeric semiconductors are of tremendous interest for high-volume, low-cost manufacturing ("printed electronics"). Due to their rather simple device structure mostly comprising only one or two functional layers, polymeric diodes are much more difficult to optimize compared to small-molecular organic devices. Usually, functions such as charge injection and transport are handled by the same material which thus needs to be highly optimized. The present work contributes to expanding the knowledge on the physical mechanisms determining device performance by analyzing the role of charge injection and transport on device efficiency for blue and white-emitting devices, based on commercially relevant spiro-linked polyfluorene derivatives. It is shown that such polymers can act as very efficient electron conductors and that interface effects such as charge trapping play the key role in determining the overall device efficiency. This work contributes to the knowledge of how charges drift through the polymer layer to finally find neutral emissive trap states and thus allows a quantitative prediction of the emission color of multichromophoric systems, compatible with the observed color shifts upon driving voltage and temperature variation as well as with electrical conditioning effects. In a more methodically oriented part, it is demonstrated that the transient device emission observed upon terminating the driving voltage can be used to monitor the decay of geminately-bound species as well as to determine trapped charge densities. This enables direct comparisons with numerical simulations based on the known properties of charge injection, transport and recombination. The method of charge extraction under linear increasing voltages (CELIV) is investigated in some detail, correcting for errors in the published approach and highlighting the role of non-idealized conditions typically present in experiments. An improved method is suggested to determine the field dependence of charge mobility in a more accurate way. Finally, it is shown that the neglect of charge recombination has led to a misunderstanding of experimental results in terms of a time-dependent mobility relaxation.},
  language  = {en}
}
@phdthesis{Grimbs2009,
  author    = {Grimbs, Sergio},
  title     = {Towards structure and dynamics of metabolic networks},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-32397},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {This work presents mathematical and computational approaches to cover various aspects of metabolic network modelling, especially regarding the limited availability of detailed kinetic knowledge on reaction rates. It is shown that precise mathematical formulations of problems are needed i) to find appropriate and, if possible, efficient algorithms to solve them, and ii) to determine the quality of the found approximate solutions. Furthermore, some means are introduced to gain insights on dynamic properties of metabolic networks either directly from the network structure or by additionally incorporating steady-state information. Finally, an approach to identify key reactions in a metabolic networks is introduced, which helps to develop simple yet useful kinetic models. The rise of novel techniques renders genome sequencing increasingly fast and cheap. In the near future, this will allow to analyze biological networks not only for species but also for individuals. Hence, automatic reconstruction of metabolic networks provides itself as a means for evaluating this huge amount of experimental data. A mathematical formulation as an optimization problem is presented, taking into account existing knowledge and experimental data as well as the probabilistic predictions of various bioinformatical methods. The reconstructed networks are optimized for having large connected components of high accuracy, hence avoiding fragmentation into small isolated subnetworks. The usefulness of this formalism is exemplified on the reconstruction of the sucrose biosynthesis pathway in Chlamydomonas reinhardtii. The problem is shown to be computationally demanding and therefore necessitates efficient approximation algorithms. The problem of minimal nutrient requirements for genome-scale metabolic networks is analyzed. Given a metabolic network and a set of target metabolites, the inverse scope problem has as it objective determining a minimal set of metabolites that have to be provided in order to produce the target metabolites. These target metabolites might stem from experimental measurements and therefore are known to be produced by the metabolic network under study, or are given as the desired end-products of a biotechological application. The inverse scope problem is shown to be computationally hard to solve. However, I assume that the complexity strongly depends on the number of directed cycles within the metabolic network. This might guide the development of efficient approximation algorithms. Assuming mass-action kinetics, chemical reaction network theory (CRNT) allows for eliciting conclusions about multistability directly from the structure of metabolic networks. Although CRNT is based on mass-action kinetics originally, it is shown how to incorporate further reaction schemes by emulating molecular enzyme mechanisms. CRNT is used to compare several models of the Calvin cycle, which differ in size and level of abstraction. Definite results are obtained for small models, but the available set of theorems and algorithms provided by CRNT can not be applied to larger models due to the computational limitations of the currently available implementations of the provided algorithms. Given the stoichiometry of a metabolic network together with steady-state fluxes and concentrations, structural kinetic modelling allows to analyze the dynamic behavior of the metabolic network, even if the explicit rate equations are not known. In particular, this sampling approach is used to study the stabilizing effects of allosteric regulation in a model of human erythrocytes. Furthermore, the reactions of that model can be ranked according to their impact on stability of the steady state. The most important reactions in that respect are identified as hexokinase, phosphofructokinase and pyruvate kinase, which are known to be highly regulated and almost irreversible. Kinetic modelling approaches using standard rate equations are compared and evaluated against reference models for erythrocytes and hepatocytes. The results from this simplified kinetic models can simulate acceptably the temporal behavior for small changes around a given steady state, but fail to capture important characteristics for larger changes. The aforementioned approach to rank reactions according to their influence on stability is used to identify a small number of key reactions. These reactions are modelled in detail, including knowledge about allosteric regulation, while all other reactions were still described by simplified reaction rates. These so-called hybrid models can capture the characteristics of the reference models significantly better than the simplified models alone. The resulting hybrid models might serve as a good starting point for kinetic modelling of genome-scale metabolic networks, as they provide reasonable results in the absence of experimental data, regarding, for instance, allosteric regulations, for a vast majority of enzymatic reactions.},
  language  = {en}
}
@phdthesis{Hakimhashemi2009,
  author    = {Hakimhashemi, Amir Hossein},
  title     = {Time-dependent occurrence rates of large earthquakes in the Dead Sea fault zone and applications to probabilistic seismic hazard assessments},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-52486},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Die relativ hohe seismische Aktivit{\"a}t der Tote-Meer-St{\"o}rungszone (Dead Sea Fault Zone - DSFZ) ist mit einem hohen Gefahrenpotential verbunden, welches zu einem erheblichen Erdbebenrisiko f{\"u}r die Ballungszentren in den L{\"a}ndern Syrien, Libanon, Pal{\"a}stina, Jordanien und Israel f{\"u}hrt. Eine Vielzahl massiver, zerst{\"o}rerischer Erdbeben hat sich in diesem Raum in den letzten zwei Jahrtausenden ereignet. Ihre Wiederholungsrate zeigt Anzeichen f{\"u}r eine zeitliche Abh{\"a}ngigkeit, insbesondere wenn lange Zeitr{\"a}ume in Betracht gezogen werden. Die Ber{\"u}cksichtigung der zeitlichen Abh{\"a}ngigkeit des Auftretens von Erdbeben ist f{\"u}r eine realistische seismische Gef{\"a}hrdungseinsch{\"a}tzung von großer Bedeutung. Ziel der vorliegenden Arbeit ist es, anhand des zeitabh{\"a}ngigen Auftretens von Erdbeben eine robuste wahrscheinlichkeitstheoretische seismische Gef{\"a}hrdungseinsch{\"a}tzung am Beispiel der DSFZ zu entwickeln. Mittels dieser Methode soll die zeitliche Abh{\"a}ngigkeit des Auftretens von großen Erdbeben (Mw ≥ 6) untersucht und somit eine Gef{\"a}hrdungseinsch{\"a}tzung f{\"u}r das Untersuchungsgebiet getroffen werden. Prim{\"a}r gilt es zu pr{\"u}fen, ob das Auftreten von großen Erdbeben tats{\"a}chlich einer zeitlichen Abh{\"a}ngigkeit unterliegt und wenn ja, inwiefern diese bestimmt werden kann. Zu diesem Zweck werden insgesamt vier zeitabh{\"a}ngige statistische Verteilungen (Weibull, Gamma, Lognormal und Brownian Passage Time (BPT)) sowie die zeitunabh{\"a}ngige Exponentialverteilung (Poisson-Prozess) getestet. Zur Absch{\"a}tzung der jeweiligen Modellparameter wird eine modifizierte Methode der gewichteten Maximum-Likelihood-Sch{\"a}tzung (MLE) verwendet. Um einzusch{\"a}tzen, ob die Wiederholungsrate von Erdbeben einer unimodalen oder multimodalen Form folgt, wird ein nichtparametrischer Bootstrap-Test f{\"u}r Multimodalit{\"a}t durchgef{\"u}hrt. Im Falle einer multimodalen Form wird neben der MLE zus{\"a}tzlich eine Erwartungsmaximierungsmethode (EM) herangezogen. Zur Auswahl des am besten geeigneten Modells wird zum einem das Bayesschen Informationskriterium (BIC) und zum anderen der modifizierte Kolmogorow-Smirnow-Goodness-of-Fit-Test angewendet. Abschließend werden mittels der Bootstrap-Methode die Konfidenzintervalle der gesch{\"a}tzten Parameter berechnet. Als Datengrundlage werden Erdbeben mit Mw ≥ 6 seit dem Jahre 300 n. Chr. herangezogen. Das Untersuchungsgebiet erstreckt sich von 29.5° N bis 37° N und umfasst ein ca. 40 km breites Gebiet entlang der DSFZ. Aufgrund der seismotektonischen Situation im Untersuchungsgebiet wird zwischen einer s{\"u}dlichen, zentralen und n{\"o}rdlichen Subzone unterschieden. Dabei kann die s{\"u}dliche Subzone aus Mangel an Daten nicht f{\"u}r die Analysen herangezogen werden. Die Ergebnisse f{\"u}r die zentrale Subzone zeigen keinen signifikanten multimodalen Verlauf der Wiederholungsrate von Erdbeben. Des Weiteren ist kein signifikanter Unterschied zwischen den zeitabh{\"a}ngigen und dem zeitunabh{\"a}ngigem Modell zu verzeichnen. Da das zeitunabh{\"a}ngige Modell vergleichsweise einfach interpretierbar ist, wird die Wiederholungsrate von Erdbeben in dieser Subzone unter Annahme der Exponentialverteilungs-Hypothese abgesch{\"a}tzt. Sie wird demnach als zeitunabh{\"a}ngig betrachtet und betr{\"a}gt 9.72 * 10-3 Erdbeben (mit Mw ≥ 6) pro Jahr. Einen besonderen Fall stellt die n{\"o}rdliche Subzone dar. In diesem Gebiet tritt im Durchschnitt alle 51 Jahre ein massives Erdbeben (Mw ≥ 6) auf. Das letzte Erdbeben dieser Gr{\"o}ße ereignete sich 1872 und liegt somit bereits 137 Jahre zur{\"u}ck. Somit ist in diesem Gebiet ein Erdbeben dieser St{\"a}rke {\"u}berf{\"a}llig. Im statistischen Mittel liegt die Zeit zwischen zwei Erdbeben zu 96\% unter 137 Jahren. Zudem wird eine deutliche zeitliche Abh{\"a}ngigkeit der Erdbeben-Wiederauftretensrate durch die Ergebnisse der in der Arbeit neu entwickelten statistischen Verfahren best{\"a}tigt. Dabei ist festzustellen, dass die Wiederholungsrate insbesondere kurz nach einem Erdbeben eine sehr hohe zeitliche Abh{\"a}ngigkeit aufweist. Am besten repr{\"a}sentiert werden die seismischen Bedingungen in der genannten Subzone durch ein bi-modales Weibull-Weibull-Modell. Die Wiederholungsrate ist eine glatte Zeitfunktion, welche zwei H{\"a}ufungen von Datenpunkten in der Zeit nach dem Erdbeben zeigt. Dabei umfasst die erste H{\"a}ufung einen Zeitraum von 80 Jahren, ausgehend vom Zeitpunkt des jeweiligen Bebens. Innerhalb dieser Zeitspanne ist die Wiederholungsrate extrem zeitabh{\"a}ngig. Die Wiederholungsrate direkt nach einem Beben ist sehr niedrig und steigert sich in den folgenden 10 Jahren erheblich bis zu einem Maximum von 0.024 Erdbeben/Jahr. Anschließend sinkt die Rate und erreicht ihr Minimum nach weiteren 70 Jahren mit 0.0145 Erdbeben/Jahr. An dieses Minimum schließt sich die zweite H{\"a}ufung von Daten an, dessen Dauer abh{\"a}ngig von der Erdbebenwiederholungszeit ist. Innerhalb dieses Zeitfensters nimmt die Erdbeben-Wiederauftretensrate ann{\"a}hernd konstant um 0.015 Erdbeben/Jahr zu. Diese Ergebnisse bilden die Grundlage f{\"u}r eine zeitabh{\"a}ngige probabilistische seismische Gef{\"a}hrdungseinsch{\"a}tzung (PSHA) f{\"u}r die seismische Quellregion, die den n{\"o}rdlichen Raum der DSFZ umfasst.},
  language  = {en}
}
@phdthesis{SennemaSkowronek2009,
  author    = {Sennema-Skowronek, Anke},
  title     = {The use of focus markers in second language word processing},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-37237},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {There are many factors which make speaking and understanding a second language (L2) a highly complex challenge. Skills and competencies in in both linguistic and metalinguistic areas emerge as parts of a multi-faceted, flexible concept underlying bilingual/multilingual communication. On the linguistic level, a combination of an extended knowledge of idiomatic expressions, a broad lexical familiarity, a large vocabulary size, and the ability to deal with phonetic distinctions and fine phonetic detail has been argued necessary for effective nonnative comprehension of spoken language. The scientific interest in these factors has also led to more interest in the L2's information structure, the way in which information is organised and packaged into informational units, both within and between clauses. On a practical level, the information structure of a language can offer the means to assign focus to a certain element considered important. Speakers can draw from a rich pool of linguistic means to express this focus, and listeners can in turn interpret these to guide them to the highlighted information which in turn facilitates comprehension, resulting in an appropriate understanding of what has been said. If a speaker doesn't follow the principles of information structure, and the main accent in a sentence is placed on an unimportant word, then there may be inappropriate information transfer within the discourse, and misunderstandings. The concept of focus as part of the information structure of a language, the linguistic means used to express it, and the differential use of focus in native and nonnative language processing are central to this dissertation. Languages exhibit a wide range of ways of directing focus, including by prosodic means, by syntactic constructions, and by lexical means. The general principles underlying information structure seem to contrast structurally across different languages, and they can also differ in the way they express focus. In the context of L2 acquisition, characteristics of the L1 linguistic system are argued to influence the acquisition of the L2. Similarly, the conceptual patterns of information structure of the L1 may influence the organization of information in the L2. However, strategies and patterns used to exploit information structure for succesful language comprehension in the native L1, may not apply at all, or work in different ways or todifferent degrees in the L2. This means that L2 learners ideally have to understand the way that information structure is expressed in the L2 to fully use the information structural benefit in the L2. The knowledge of information structural requirements in the L2 could also imply that the learner would have to make adjustments regarding the use of information structural devices in the L2. The general question is whether the various means to mark focus in the learners' native language are also accessible in the nonnative language, and whether a L1-L2 transfer of their usage should be considered desirable. The current work explores how information structure helps the listener to discover and structure the forms and meanings of the L2. The central hypothesis is that the ability to access information structure has an impact on the level of the learners' appropriateness and linguistic competence in the L2. Ultimately, the ability to make use of information structure in the L2 is believed to underpin the L2 learners' ability to effectively communicate in the L2. The present study investigated how use of focus markers affects processing speed and word recall recall in a native-nonnative language comparison. The predominant research question was whether the type of focus marking leads to more efficient and accurate word processing in marked structures than in unmarked structures, and whether differences in processing patterns can be observed between the two language conditions. Three perception studies were conducted, each concentrating on one of the following linguistic parameters: 1. Prosodic prominence: Does prosodic focus conveyed by sentence accent and by word position facilitate word recognition? 2. Syntactical means: Do cleft constructions result in faster and more accurate word processing? 3. Lexical means: Does focus conveyed by the particles even/only (German: sogar/nur) facilitate word processing and word recall? Experiments 2 and 3 additionally investigated the contribution of context in the form of preceding questions. Furthermore, they considered accent and its facilitative effect on the processing of words which are in the scope of syntactic or lexical focus marking. All three experiments tested German learners of English in a native German language condition and in English as their L2. Native English speakers were included as a control for the English language condition. Test materials consisted of single sentences, all dealing with bird life. Experiment 1 tested word recognition in three focus conditions (broad focus, narrow focus on the target, and narrow focus on a constituent than the target) in one condition using natural unmanipulated sentences, and in the other two conditions using spliced sentences. Experiment 2 (effect of syntactic focus marking) and Experiment 3 (effect of lexical focus marking) used phoneme monitoring as a measure for the speed of word processing. Additionally, a word recall test (4AFC) was conducted to assess the effective entry of target-bearing words in the listeners' memory. Experiment 1: Focus marking by prosodic means Prosodic focus marking by pitch accent was found to highlight important information (Bolinger, 1972), making the accented word perceptually more prominent (Klatt, 1976; van Santen \& Olive, 1990; Eefting, 1991; Koopmans-van Beinum \& van Bergem, 1989). However, accent structure seems to be processed faster in native than in nonnative listening (Akker\& Cutler, 2003, Expt. 3). Therefore, it is expected that prosodically marked words are better recognised than unmarked words, and that listeners can exploit accent structure better for accurate word recognition in their L1 than they do in the L2 (L1 > L2). Altogether, a difference in word recognition performance in L1 listening is expected between different focus conditions (narrow focus > broad focus). Results of Experiments 1 show that words were better recognized in native listening than in nonnative listening. Focal accent, however, doesn't seem to help the German subjects recognize accented words more accurately, in both the L1 and the L2. This could be due to the focus conditions not being acoustically distinctive enough. Results of experiments with spliced materials suggest that the surrounding prosodic sentence contour made listeners remember a target word and not the local, prosodic realization of the word. Prosody seems to indeed direct listeners' attention to the focus of the sentence (see Cutler, 1976). Regarding the salience of word position, VanPatten (2002; 2004) postulated a sentence location principle for L2 processing, stating a ranking of initial > final > medial word position. Other evidence mentions a processing adantage of items occurring late in the sentence (Akker \& Cutler, 2003), and Rast (2003) observed in an English L2 production study a trend of an advantage of items occurring at the outer ends of the sentence. The current Experiment 1 aimed to keep the length of the sentences to an acceptable length, mainly to keep the task in the nonnative lnaguage condition feasable. Word length showed an effect only in combination with word position (Rast, 2003; Rast \& Dommergues, 2003). Therefore, word length was included in the current experiment as a secondary factor and without hypotheses. Results of Experiment 1 revealed that the length of a word doesn't seem to be important for its accurate recognition. Word position, specifically the final position, clearly seems to facilitate accurate word recognition in German. A similar trend emerges in condition English L2, confirming Klein (1984) and Slobin (1985). Results don't support the sentence location principle of VanPatten (2002; 2004). The salience of the final position is interpreted as recency effect (Murdock, 1962). In addition, the advantage of the final position may benefit from the discourse convention that relevant background information is referred to first, and then what is novel later (Haviland \& Clark, 1974). This structure is assumed to cue the listener as to what the speaker considers to be important information, and listeners might have reacted according to this convention. Experiment 2: Focus marking by syntactic means Atypical syntactic structures often draw listeners' attention to certain information in an utterance, and the cleft structure as a focus marking device appears to be a common surface feature in many languages (Lambrecht, 2001). Surface structure influences sentence processing (Foss \& Lynch, 1969; Langford \& Holmes, 1979), which leads to competing hypotheses in Experiment 2: on the one hand, the focusing effect of the cleft construction might reduce processing times. On the other, cleft constructions in German were found to be used less to mark fo than in English (Ahlemeyer \& Kohlhof, 1999; Doherty, 1999; E. Klein, 1988). The complexity of the constructions, and the experience from the native language might work against an advantage of the focus effect in the L2. Results of Experiment 2 show that the cleft structure is an effective device to mark focus in German L1. The processing advantage is explained by the low degree of structural markedness of cleft structures: listeners use the focus function of sentence types headed by the dummy subject es (English: it) due to reliance on 'safe' subject-prominent SVO-structures. The benefit of cleft is enhanced when the sentences are presented with context, suggesting a substantial benefit when focus effects of syntactic surface structure and coherence relation between sentences are integrated. Clefts facilitate word processing for English native speakers. Contrary to German L1, the marked cleft construction doesn't reduce processing times in English L2. The L1-L2 difference was interpreted as a learner problem of applying specific linguistic structures according to the principles of information structure in the target language. Focus marking by cleft did not help German learners in native or in nonnative word recall. This could be attributed to the phonological similarity of the multiple choice options (Conrad \& Hull, 1964), and to a long time span between listening and recall (Birch \& Garnsey, 1995; McKoon et al., 1993). Experiment 3: Focus marking by lexical means Focus particles are elements of structure that can indicate focus (K{\"o}nig, 1991), and their function is to emphasize a certain part of the sentence (Paterson et al., 1999). I argue that the focus particles even/only (German: sogar/nur) evoke contrast sets of alternatives resp. complements to the element in focus (Ni et al., 1996), which causes interpretations of context. Therefore, lexical focus marking isn't expected to lead to faster word processing. However, since different mechanisms of encoding seem to underlie word memory, a benefit of the focusing function of particles is expected to show in the recall task: due to focus particles being a preferred and well-used feature for native speakers of German, a transfer of this habitualness is expected, resulting in a better recall of focused words. Results indicated that focus particles seem to be the weakest option to mark focus: Focus marking by lexical particle don't seem to reduce word processing times in either German L1, English L2, or in English L1. The presence of focus particles is likely to instantiate a complex discourse model which lets the listener await further modifying information (Liversedge et al., 2002). This semantic complexity might slow down processing. There are no indications that focus particles facilitate native language word recall in German L1 and English L1. This could be because focus particles open sets of conditions and contexts that enlarge the set of representations in listeners rather than narrowing it down to the element in the scope of the focus particle. In word recall, the facilitative effect of focus particles emerges only in the nonnative language condition. It is suggested that L2 learners, when faced with more demanding tasks in an L2, use a broad variety of means that identify focus for a better representation of novel words in the memory. In Experiments 2 and 3, evidence suggests that accent is an important factor for efficient word processing and accurate recall in German L1 and English L1, but less so in English L2. This underlines the function of accent as core speech parameter and consistent cue to the perception of prominence native language use (see Cutler \& Fodor, 1979; Pitt \& Samuel, 1990a; Eriksson et al., 2002; Akker \& Cutler, 2003); the L1-L2 difference is attributed to patterns of expectation that are employed in the L1 but not (yet?) in the L2. There seems to exist a fine-tuned sensitivity to how accents are distributed in the native language, listeners expect an appropriate distribution and interpret it accordingly (Eefting, 1991). This pleads for accent placement as extremely important to L2 proficiency; the current results also suggest that accent and its relationship with other speech parameters has to be newly established in the L2 to fully reveal its benefits for efficient processing of speech. There is evidence that additional context facilitates processing of complex syntactic structures but that a surplus of information has no effect if the sentence construction is less challenging for the listener. The increased amount of information to be processed seems to impede better word recall, particularly in the L2. Altogether, it seems that focus marking devices and context can combine to form an advantageous alliance: a substantial benefit in processing efficiency is found when parameters of focus marking and sentence coherence are integrated. L2 research advocates the beneficial aspects of providing context for efficient L2 word learning (Lawson \& Hogben, 1996). The current thesis promotes the view that a context which offers more semantic, prosodic, or lexical connections might compensate for the additional processing load that context constitutes for the listeners. A methodological consideration concerns the order in which language conditions are presented to listeners, i.e., L1-L2 or L2-L1. Findings suggest that presentation order could enforce a learning bias, with the performance in the second experiment being influenced by knowledge acquired in the first (see Akker \& Cutler, 2003). To conclude this work: The results of the present study suggest that information structure is more accessible in the native language than it is in the nonnative language. There is, however, some evidence that L2 learners have an understanding of the significance of some information-structural parameters of focus marking. This has a beneficial effect on processing efficiency and recall accuracy; on the cognitive side it illustrates the benefits and also the need of a dynamic exchange of information-structural organization between L1 and L2. The findings of the current thesis encourage the view that an understanding of information structure can help the learner to discover and categorise forms and meanings of the L2. Information structure thus emerges as a valuable resource to advance proficiency in a second language.},
  language  = {en}
}
@phdthesis{Goethe2009,
  author    = {G{\"o}the, Katrin},
  title     = {The limits of parallel processing},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-46063},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Trying to do two things at once decreases performance of one or both tasks in many cases compared to the situation when one performs each task by itself. The present thesis deals with the question why and in which cases these dual-task costs emerge and moreover, whether there are cases in which people are able to process two cognitive tasks at the same time without costs. In four experiments the influence of stimulus-response (S-R) compatibility, S-R modality pairings, interindividual differences, and practice on parallel processing ability of two tasks are examined. Results show that parallel processing is possible. Nevertheless, dual-task costs emerge when: the personal processing strategy is serial, the two tasks have not been practiced together, S-R compatibility of both tasks is low (e.g. when a left target has to be responded with a right key press and in the other task an auditorily presented "A" has to be responded by saying "B"), and modality pairings of both tasks are Non Standard (i.e., visual-spatial stimuli are responded vocally whereas auditory-verbal stimuli are responded manually). Results are explained with respect to executive-based (S-R compatibility) and content-based crosstalk (S-R modality pairings) between tasks. Finally, an alternative information processing account with respect to the central stage of response selection (i.e., the translation of the stimulus to the response) is presented.},
  language  = {en}
}
@phdthesis{Yin2009,
  author    = {Yin, Chunhong},
  title     = {The interplay of nanostructure and efficiency of polymer solar cells},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-29054},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {The aim of this thesis is to achieve a deep understanding of the working mechanism of polymer based solar cells and to improve the device performance. Two types of the polymer based solar cells are studied here: all-polymer solar cells comprising macromolecular donors and acceptors based on poly(p-phenylene vinylene) and hybrid cells comprising a PPV copolymer in combination with a novel small molecule electron acceptor. To understand the interplay between morphology and photovoltaic properties in all-polymer devices, I compared the photocurrent characteristics and excited state properties of bilayer and blend devices with different nano-morphology, which was fine tuned by using solvents with different boiling points. The main conclusion from these complementary measurements was that the performance-limiting step is the field-dependent generation of free charge carriers, while bimolecular recombination and charge extraction do not compromise device performance. These findings imply that the proper design of the donor-acceptor heterojunction is of major importance towards the goal of high photovoltaic efficiencies. Regarding polymer-small molecular hybrid solar cells I combined the hole-transporting polymer M3EH-PPV with a novel Vinazene-based electron acceptor. This molecule can be either deposited from solution or by thermal evaporation, allowing for a large variety of layer architectures to be realized. I then demonstrated that the layer architecture has a large influence on the photovoltaic properties. Solar cells with very high fill factors of up to 57 \% and an open circuit voltage of 1V could be achieved by realizing a sharp and well-defined donor-acceptor heterojunction. In the past, fill factors exceeding 50 \% have only been observed for polymers in combination with soluble fullerene-derivatives or nanocrystalline inorganic semiconductors as the electron-accepting component. The finding that proper processing of polymer-vinazene devices leads to similar high values is a major step towards the design of efficient polymer-based solar cells.},
  language  = {en}
}
@phdthesis{Mergenthaler2009,
  author    = {Mergenthaler, Konstantin K.},
  title     = {The control of fixational eye movements},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-29397},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {In normal everyday viewing, we perform large eye movements (saccades) and miniature or fixational eye movements. Most of our visual perception occurs while we are fixating. However, our eyes are perpetually in motion. Properties of these fixational eye movements, which are partly controlled by the brainstem, change depending on the task and the visual conditions. Currently, fixational eye movements are poorly understood because they serve the two contradictory functions of gaze stabilization and counteraction of retinal fatigue. In this dissertation, we investigate the spatial and temporal properties of time series of eye position acquired from participants staring at a tiny fixation dot or at a completely dark screen (with the instruction to fixate a remembered stimulus); these time series were acquired with high spatial and temporal resolution. First, we suggest an advanced algorithm to separate the slow phases (named drift) and fast phases (named microsaccades) of these movements, which are considered to play different roles in perception. On the basis of this identification, we investigate and compare the temporal scaling properties of the complete time series and those time series where the microsaccades are removed. For the time series obtained during fixations on a stimulus, we were able to show that they deviate from Brownian motion. On short time scales, eye movements are governed by persistent behavior and on a longer time scales, by anti-persistent behavior. The crossover point between these two regimes remains unchanged by the removal of microsaccades but is different in the horizontal and the vertical components of the eyes. Other analyses target the properties of the microsaccades, e.g., the rate and amplitude distributions, and we investigate, whether microsaccades are triggered dynamically, as a result of earlier events in the drift, or completely randomly. The results obtained from using a simple box-count measure contradict the hypothesis of a purely random generation of microsaccades (Poisson process). Second, we set up a model for the slow part of the fixational eye movements. The model is based on a delayed random walk approach within the velocity related equation, which allows us to use the data to determine control loop durations; these durations appear to be different for the vertical and horizontal components of the eye movements. The model is also motivated by the known physiological representation of saccade generation; the difference between horizontal and vertical components concurs with the spatially separated representation of saccade generating regions. Furthermore, the control loop durations in the model suggest an external feedback loop for the horizontal but not for the vertical component, which is consistent with the fact that an internal feedback loop in the neurophysiology has only been identified for the vertical component. Finally, we confirmed the scaling properties of the model by semi-analytical calculations. In conclusion, we were able to identify several properties of the different parts of fixational eye movements and propose a model approach that is in accordance with the described neurophysiology and described limitations of fixational eye movement control.},
  language  = {en}
}
@phdthesis{Ballato2009,
  author    = {Ballato, Paolo},
  title     = {Tectonic and climatic forcing in orogenic processes : the foreland basin point of view, Alborz mountains, N Iran},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-41068},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Systeme von Vorlandbecken repr{\"a}sentieren bedeutende geologische Archive und dienen dem Verst{\"a}ndnis von R{\"u}ckkopplungen zwischen oberfl{\"a}chennahen und tektonischen Prozessen. Außerdem dokumentieren sie die Entwicklung unmittelbar angrenzender Bergketten. Die sediment{\"a}ren Abfolgen in Vorlandbecken reflektieren das Gleichgewicht zwischen tektonischer Subsidenz, der Bildung langzeitlichen Akkommodationsraumes und des Sedimenteintrages, welcher wiederum die Wirksamkeit von Erosions- und Massenneuverteilungsprozessen wiederspiegelt. Um die Effekte von Klima und Tektonik in einem solchen System zu erforschen, untersuchte ich die Oligo-Mioz{\"a}nen Sedimente in den Vorlandbecken der s{\"u}dlichen Elburs Bergkette, einem intrakontinentalen Gebirge in Nord-Iran, das im Zuge der Arabisch-Eurasischen Kontinent-Kollision herausgehoben wurde. In dieser Studie der Vorlandbeckensedimente wurden Datierungstechniken angewandt (40Ar/39Ar, (U-Th)/He Thermochronologie und Magnetostratigraphie), die Sedimente und deren Herkunft analysiert und die Tonmineralogie, sowie Sauerstoff- und Kohlenstoffisotope untersucht. Die Ergebnisse zeigen, dass auf einer Zeitskala von 105 bis 106 Jahren eine systematische Korrelation zwischen „coarsening upward" Zyklen und den sediment{\"a}ren Akkumulationsraten besteht. W{\"a}hrend sukzessiver {\"U}berschiebungsphasen werden die durch Hebung der Bergkette bereitgestellten groben Kornfraktionen in proximale Bereiche des Beckens geliefert und feink{\"o}rnige Fazies in distalen Beckenregionen abgelagert. Variationen in der Sedimentherkunft in Phasen gr{\"o}ßerer tektonischer Aktivit{\"a}t zeugen von erosionaler Abdeckung und/oder der Umorganisation nat{\"u}rlicher Entw{\"a}sserungsstrukturen. Außerdem zeigen die Untersuchungen an stabilen Isotopen, dass die verst{\"a}rkte tektonische Aktivit{\"a}t das Anwachsen der Topographie f{\"o}rderte und damit die Wirksamkeit einer topographischen Barriere erh{\"o}hte. Wenn aufgrund nachlassender Beckenabsenkung die grobe Kornfraktion nicht vollst{\"a}ndig im Nahbereich des Beckens aufgenommen werden kann breitet sie sich in ferne Beckenregionen aus. Im Elburs wird die verringerte Subsidenz durch eine interne Hebung des Vorlandes hervorgerufen und ist mit einer lateralen Stapelung von Flussbetten assoziiert. Dokumentiert wird dies anhand konsequenten Schichtwachstums, tektonischer Schr{\"a}gstellung und sediment{\"a}rer Umlagerung. Gleichzeitig nehmen die Sedimentationsraten zu. Die Sauerstoff-Isotope der Pal{\"a}ob{\"o}den zeigen, dass dieser Anstieg mit einer Phase feuchteren Klimas einhergeht, wodurch Oberfl{\"a}chenprozesse effizienter werden und Heraushebungssraten steigen, was eine positive R{\"u}ckkopplung erzeugt. Des Weiteren zeigen die isotopischen und sediment{\"a}ren Daten, dass seit 10-9 Millionen Jahren (Ma) das Klima durch saisonalen Anstieg der Niederschl{\"a}ge zunehmend feuchter wurde. Da bedeutende klimatische Ver{\"a}nderungen zu dieser Zeit auch im Mittelmeerraum und Asien beobachtet wurden, ist anzunehmen, dass die klimatische Ver{\"a}nderung, die im Elburs Gebirge beobachtet wird, h{\"o}chstwahrscheinlich {\"A}nderungen der atmosph{\"a}rischen Zirkulationen der n{\"o}rdlichen Hemisph{\"a}re reflektiert. Aus den Ergebnissen dieser Studie lassen sich zus{\"a}tzliche Implikationen f{\"u}r die Entwicklung des Elburs Gebirges und die Arabisch-Eurasische kontinentale Kollisionszone ableiten. Die orogen-weite Hauptdeformation propagierte nicht gleichm{\"a}ßig nach S{\"u}den, sondern seit dem Oligoz{\"a}n schrittweise vorw{\"a}rts und r{\"u}ckw{\"a}rts. Insbesondere von ~17,5 bis 6,2 Ma wurde das Gebirge durch eine Kombination aus frontaler Akkretion und interner Keildeformation in Schritten von 0,7 bis 2 Millionen Jahren herausgehoben. Dar{\"u}ber hinaus deuten die Sedimentherkunftsdaten darauf hin, dass sich noch vor 10-9 Ma die Haupteinengungsrichtung von NW-SE nach NNE-SSW ver{\"a}nderte. Regional erlaubt die Geschichte der untersuchten Becken und angrenzenden Gebirgsz{\"u}ge R{\"u}ckschl{\"u}sse auf ein neues geodynamisches Model zur Entwicklung der Arabisch-Eurasischen kontinentalen Kollisionszone. Zahlreiche Sedimentbecken des Elburs Gebirges und anderer Lokalit{\"a}ten der Arabisch-Eurasischen Deformationszone belegen einen Wechsel von einem tensionalen zu einem kompressionalen tektonischen Regime vor ~36 Ma . Dieser Wechsel k{\"o}nnte den Beginn der Subduktion von gedehnter arabischer kontinentaler Lithosph{\"a}re unter Zentral-Iran bedeuten, was zu einer moderaten Plattenkopplung und Deformation von Unter- sowie Oberplatte gef{\"u}hrt hat. Der Anstieg der Deformationsraten im s{\"u}dlichen Elburs Gebirge seit ~17,5 Ma l{\"a}sst vermuten, dass die Oberplatte, wahrscheinlich aufgrund steigender Plattenkopplung, seit dem fr{\"u}hen Mioz{\"a}n signifikant deformiert wurde. Diese Ver{\"a}nderung k{\"o}nnte der Subduktion m{\"a}chtigerer arabischer kontinentaler Lithosph{\"a}re zugeschrieben werden und den Anfang echter kontinentaler Kollision bedeuten. Dieses Model erkl{\"a}rt daher die Zeitverz{\"o}gerung zwischen der Initiation der Arabisch-Eurasischen kontinentalen Kollision (Eoz{\"a}n-Oligoz{\"a}n) and dem Beginn ausgedehnter Deformation in der Kollisionszone (Mioz{\"a}n).},
  language  = {en}
}
@phdthesis{Jechow2009,
  author    = {Jechow, Andreas},
  title     = {Tailoring the emission of stripe-array diode lasers with external cavities to enable nonlinear frequency conversion},
  publisher = {Universit{\"a}tsverlag Potsdam},
  address   = {Potsdam},
  isbn      = {978-3-86956-031-1},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-39653},
  school      = {Universit{\"a}t Potsdam},
  pages     = {ii, 139},
  year      = {2009},
  abstract  = {A huge number of applications require coherent radiation in the visible spectral range. Since diode lasers are very compact and efficient light sources, there exists a great interest to cover these applications with diode laser emission. Despite modern band gap engineering not all wavelengths can be accessed with diode laser radiation. Especially in the visible spectral range between 480 nm and 630 nm no emission from diode lasers is available, yet. Nonlinear frequency conversion of near-infrared radiation is a common way to generate coherent emission in the visible spectral range. However, radiation with extraordinary spatial temporal and spectral quality is required to pump frequency conversion. Broad area (BA) diode lasers are reliable high power light sources in the near-infrared spectral range. They belong to the most efficient coherent light sources with electro-optical efficiencies of more than 70\%. Standard BA lasers are not suitable as pump lasers for frequency conversion because of their poor beam quality and spectral properties. For this purpose, tapered lasers and diode lasers with Bragg gratings are utilized. However, these new diode laser structures demand for additional manufacturing and assembling steps that makes their processing challenging and expensive. An alternative to BA diode lasers is the stripe-array architecture. The emitting area of a stripe-array diode laser is comparable to a BA device and the manufacturing of these arrays requires only one additional process step. Such a stripe-array consists of several narrow striped emitters realized with close proximity. Due to the overlap of the fields of neighboring emitters or the presence of leaky waves, a strong coupling between the emitters exists. As a consequence, the emission of such an array is characterized by a so called supermode. However, for the free running stripe-array mode competition between several supermodes occurs because of the lack of wavelength stabilization. This leads to power fluctuations, spectral instabilities and poor beam quality. Thus, it was necessary to study the emission properties of those stripe-arrays to find new concepts to realize an external synchronization of the emitters. The aim was to achieve stable longitudinal and transversal single mode operation with high output powers giving a brightness sufficient for efficient nonlinear frequency conversion. For this purpose a comprehensive analysis of the stripe-array devices was done here. The physical effects that are the origin of the emission characteristics were investigated theoretically and experimentally. In this context numerical models could be verified and extended. A good agreement between simulation and experiment was observed. One way to stabilize a specific supermode of an array is to operate it in an external cavity. Based on mathematical simulations and experimental work, it was possible to design novel external cavities to select a specific supermode and stabilize all emitters of the array at the same wavelength. This resulted in stable emission with 1 W output power, a narrow bandwidth in the range of 2 MHz and a very good beam quality with M²<1.5. This is a new level of brightness and brilliance compared to other BA and stripe-array diode laser systems. The emission from this external cavity diode laser (ECDL) satisfied the requirements for nonlinear frequency conversion. Furthermore, a huge improvement to existing concepts was made. In the next step newly available periodically poled crystals were used for second harmonic generation (SHG) in single pass setups. With the stripe-array ECDL as pump source, more than 140 mW of coherent radiation at 488 nm could be generated with a very high opto-optical conversion efficiency. The generated blue light had very good transversal and longitudinal properties and could be used to generate biphotons by parametric down-conversion. This was feasible because of the improvement made with the infrared stripe-array diode lasers due to the development of new physical concepts.},
  language  = {en}
}
@phdthesis{Phirtskhalashvili2009,
  author    = {Phirtskhalashvili, Anna},
  title     = {Schutzpflichten und die horizontale Wirkung von Grundrechten in der Verfassung Georgiens vom 24. August 1995 : eine vergleichende Untersuchung der staatlichen Schutzpflichten aus der Europ{\"a}ischen Menschenrechtskonvention und der georgischen Verfassung unter besonderer Ber{\"u}cksichtigung der deutschen Schutzpflichtenlehre},
  isbn      = {978-3-86956-041-0},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-40728},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Die vorliegende Untersuchung zeigt das st{\"a}ndige Wachstum der Dimension und Bedeutung der staatlichen Schutzpflichten als eine eigenst{\"a}ndige Funktion der Grundrechte. Mit jedem Fortschritt und der Entwicklung in der modernen Welt, entstehen in der Gesellschaft immer wieder neue Bereiche, die gesetzlicher Regulierung bed{\"u}rfen. Daher ist die staatliche Aufgabe eindeutig: Der Staat muss die in der Verfassung ausgelegten Prinzipien in der Realit{\"a}t durch die Gesetze umsetzen und sie st{\"a}ndig wiederkehrend nachbessern. Daher ist der Staat gefordert, die Einzelnen repressiv und pr{\"a}ventiv zu sch{\"u}tzen. Die Dissertation untersucht die Problematik von staatlichen Schutzpflichten im Rahmen der Grundrechte der georgischen Verfassung vom 24. August 1995 im Vergleich mit den Menschenrechten und Grundfreiheiten der Europ{\"a}ischen Menschenrechtskonvention. Die Arbeit greift ein Grundrechtsproblem auf, das sich gerade in rechtlichen und politischen Umbruchssituationen wie diejenige, die Georgien als Nachfolgestaat der zerbrochenen Sowjetunion durchlebt, als besonders wichtig erweist. Auf dem Weg zur dogmatischen Entfaltung einer grundrechtlichen Schutzpflicht wird als eine Art Leitbild die Europ{\"a}ische Menschenrechtskonvention (EMRK) herangezogen. Dies erkl{\"a}rt sich aus der Natur der EMRK, die sich als eine Art Verfassung f{\"u}r Europa darstellt und in Georgien seit 1999 in Kraft ist. In der Arbeit wird auf die deutsche Schutzpflichtenlehre verwiesen. Das erkl{\"a}rt sich aus der in Deutschland schon seit etwa 30 Jahren gef{\"u}hrten Diskussion, die immer noch nicht abgeschlossen ist, aber aus der sich bemerkenswerte und kontroverse Ergebnisse ziehen lassen. Die Arbeit zeigt, dass die georgische Verfassung zahlreiche Ans{\"a}tze der staatlichen Schutzpflichten - allgemeiner und konkreter Art - liefert, die auch vor allem in der Rechtsprechung des Georgischen Verfassungsgerichts verschiedentlich schon aufgegriffen wurden, durchaus zum Teil unter R{\"u}ckgriff auf Aussagen der Europ{\"a}ischen Menschenrechtskonvention (EMRK) bzw. des Europ{\"a}ischen Gerichtshofes f{\"u}r Menschenrechte (EGMR). Den Bereich der grundrechtlichen Schutzpflichten der georgischen Verfassung auszuleuchten ist f{\"u}r eine relativ neue Rechtstaatlichkeit eines postsowjetischen Staates wichtig, um den Anstoß f{\"u}r eine dringend n{\"o}tige Debatte zu geben.},
  language  = {de}
}
@phdthesis{Hiller2009,
  author    = {Hiller, Matthias},
  title     = {Sample preparation of membrane proteins suitable for solid-state MAS NMR and development of assignment strategies},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-37246},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Although the basic structure of biological membranes is provided by the lipid bilayer, most of the specific functions are carried out by membrane proteins (MPs) such as channels, ion-pumps and receptors. Additionally, it is known, that mutations in MPs are directly or indirectly involved in many diseases. Thus, structure determination of MPs is of major interest not only in structural biology but also in pharmacology, especially for drug development. Advances in structural biology of membrane proteins (MPs) have been strongly supported by the success of three leading techniques: X-ray crystallography, electron microscopy and solution NMR spectroscopy. However, X-ray crystallography and electron microscopy, require highly diffracting 3D or 2D crystals, respectively. Today, structure determination of non-crystalline solid protein preparations has been made possible through rapid progress of solid-state MAS NMR methodology for biological systems. Castellani et. al. solved and refined the first structure of a microcrystalline protein using only solid-state MAS NMR spectroscopy. These successful application open up perspectives to access systems that are difficult to crystallise or that form large heterogeneous complexes and insoluble aggregates, for example ligands bound to a MP-receptor, protein fibrils and heterogeneous proteins aggregates. Solid-state MAS NMR spectroscopy is in principle well suited to study MP at atomic resolution. In this thesis, different types of MP preparations were tested for their suitability to be studied by solid-state MAS NMR. Proteoliposomes, poorly diffracting 2D crystals and a PEG precipitate of the outer membrane protein G (OmpG) were prepared as a model system for large MPs. Results from this work, combined with data found in the literature, show that highly diffracting crystalline material is not a prerequirement for structural analysis of MPs by solid-state MAS NMR. Instead, it is possible to use non-diffracting 3D crystals, MP precipitates, poorly diffracting 2D crystals and proteoliposomes. For the latter two types of preparations, the MP is reconstituted into a lipid bilayer, which thus allows the structural investigation in a quasi-native environment. In addition, to prepare a MP sample for solid-state MAS NMR it is possible to use screening methods, that are well established for 3D and 2D crystallisation of MPs. Hopefully, these findings will open a fourth method for structural investigation of MP. The prerequisite for structural studies by NMR in general, and the most time consuming step, is always the assignment of resonances to specific nuclei within the protein. Since the last few years an ever-increasing number of assignments from solid-state MAS NMR of uniformly carbon and nitrogen labelled samples is being reported, mostly for small proteins of up to around 150 amino acids in length. However, the complexity of the spectra increases with increasing molecular weight of the protein. Thus the conventional assignment strategies developed for small proteins do not yield a sufficiently high degree of assignment for the large MP OmpG (281 amino acids). Therefore, a new assignment strategy to find starting points for large MPs was devised. The assignment procedure is based on a sample with [2,3-13C, 15N]-labelled Tyr and Phe and uniformly labelled alanine and glycine. This labelling pattern reduces the spectral overlap as well as the number of assignment possibilities. In order to extend the assignment, four other specifically labelled OmpG samples were used. The assignment procedure starts with the identification of the spin systems of each labelled amino acid using 2D 13C-13C and 3D NCACX correlation experiments. In a second step, 2D and 3D NCOCX type experiments are used for the sequential assignment of the observed resonances to specific nuclei in the OmpG amino acid sequence. Additionally, it was shown in this work, that biosynthetically site directed labelled samples, which are normally used to observe long-range correlations, were helpful to confirm the assignment. Another approach to find assignment starting points in large protein systems, is the use of spectroscopic filtering techniques. A filtering block that selects methyl resonances was used to find further assignment starting points for OmpG. Combining all these techniques, it was possible to assign nearly 50 \% of the observed signals to the OmpG sequence. Using this information, a prediction of the secondary structure elements of OmpG was possible. Most of the calculated motifs were in good aggreement with the crystal structures of OmpG. The approaches presented here should be applicable to a wide variety of MPs and MP-complexes and should thus open a new avenue for the structural biology of MPs.},
  language  = {en}
}
@phdthesis{Witte2009,
  author    = {Witte, Jeannine},
  title     = {Rhabdomerorganisation und -morphogenese im Komplexauge von Drosophila},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-41847},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Sehzellen von Insekten sind epitheliale Zellen mit einer charakteristischen, hochpolaren Morphologie und Organisation. Die molekularen Komponenten der Sehkaskade befinden sich im Rhabdomer, einem Saum dicht gepackter Mikrovilli entlang der Sehzelle. Bereits in den 70er Jahren des letzten Jahrhunderts wurde beschrieben, dass die Mikrovilli entlang einer Sehzelle eine unterschiedliche Ausrichtung besitzen, oder in anderen Worten, die Rhabdomere entlang der Sehzell-L{\"a}ngsachse verdreht sind. So sind in den Sehzellen R1-R6 bei dipteren Fliegen (Calliphora, Drosophila) die Mikrovilli im distalen und proximalen Bereich eines Rhabdomers etwa rechtwinkelig zueinander angeordnet. Dieses Ph{\"a}nomen wird in der Fachliteratur als rhabdomere twisting bezeichnet und reduziert die Empfindlichkeit f{\"u}r polarisiertes Licht. Es wurde f{\"u}r das Drosophila-Auge gezeigt, dass diese strukturelle Asymmetrie der Sehzellen mit einer molekularen Asymmetrie in der Verteilung phosphotyrosinierter Proteine an die Stielmembran (einem nicht-mikrovill{\"a}ren Bereich der apikalen Plasmamembran) einhergeht. Zudem wurde gezeigt, dass die immuncytochemische Markierung mit anti-Phosphotyrosin (anti-PY) als lichtmikroskopischer Marker f{\"u}r das rhabdomere twisting verwendet werden kann. Bisher wurde haupts{\"a}chlich die physiologische Bedeutung der Rhabdomerverdrehung untersucht. Es ist wenig {\"u}ber die entwicklungs- und zellbiologischen Grundlagen bekannt. Ziel der vorliegenden Arbeit war es, die Identit{\"a}t der phosphotyrosinierten Proteine an der Stielmembran zu kl{\"a}ren und ihre funktionelle Bedeutung f{\"u}r die Entwicklung des rhabdomere twisting zu analysieren. Zudem sollte untersucht werden, welchen Einfluss die inneren Sehzellen R7 und R8 auf die Verdrehung der Rhabdomere von R1-R6 haben. F{\"u}r die zwei Proteinkinasen Rolled (ERK) und Basket (JNK) vom Typ der Mitogen-aktivierten Proteinkinasen (MAPK) konnte ich zeigen, dass sie in ihrer aktivierten (= phosphorylierten) Form (pERK bzw. pJNK) eine asymmetrische Verteilung an der Stielmembran aufweisen vergleichbar der Markierung mit anti-PY. Weiterhin wurde diese asymmetrische Verteilung von pERK und pJNK ebenso wie die von PY erst kurz vor Schlupf der Fliegen (bei ca. 90\% pupaler Entwicklung) etabliert. Durch Pr{\"a}inkubationsexperimente mit anti-PY wurde die Markierung mit anti-pERK bzw. anti-pJNK unterbunden. Diese Ergebnisse sprechen daf{\"u}r, dass pERK und pJNK zu den Proteinen geh{\"o}ren, die von anti-PY an der Stielmembran erkannt werden. Da es sich bei ERK und JNK um Kinasen handelt, ist es naheliegend, dass diese an der Entwicklung des rhabdomere twisting beteiligt sein k{\"o}nnten. Diese Hypothese wurde durch die Analyse von hypermorphen (rl SEM)und hypomorphen (rl 1/rl 10a) Rolled-Mutanten {\"u}berpr{\"u}ft. In der rl SEM-Mutante mit erh{\"o}hter Aktivit{\"a}t der Proteinkinase erfolgte die asymmetrische Positionierung von pERK an der Stielmembran sowie die Mikrovillikippung schon zu einem fr{\"u}heren Zeitpunkt in der pupalen Entwicklung. Im adulten Auge war die anti-PY-Markierung im distalen Bereich der Sehzellen intensiver sowie der Kippwinkel vergr{\"o}ßert. In der rl 1/rl 10a-Mutanten mit reduzierter Kinaseaktivit{\"a}t waren die anti-PY-Markierung und der Kippwinkel im proximalen Bereich der Sehzellen verringert. Die Proteinkinase ERK hat somit einen Einfluss auf die zeitliche Etablierung des rhabdomere twisting wie auch auf dessen Auspr{\"a}gung im Adulttier. Die Rhabdomerverdrehung sowie die {\"A}nderung im anti-PY-Markierungsmuster erfolgen an den Sehzellen R1-R6 relativ abrupt auf halber Ommatidienl{\"a}nge, dort wo das Rhabdomer von R7 endet und das von R8 beginnt. Es stellte sich deshalb die Frage, ob die Rhabdomerverdrehung an R1-R6 durch die Sehzelle R7 und/oder R8 beeinflusst wird. Um dieser Frage nachzugehen wurden Mutanten analysiert, denen die R7- oder die R8-Photorezeptoren bzw. R7 und R8 fehlten. Das wichtigste Ergebnis dieser Untersuchungen war, dass bei Fehlen von R8 die Rhabdomerverdrehung bei R1-R6 nach keinen erkennbaren Regeln erfolgt. R8 ist somit Voraussetzung f{\"u}r die Etablierung der Rhabdomerverdrehung in R1-R6. Folgendes Modell wurde auf Grundlage dieses und weiterer Ergebnisse erarbeitet: Im dritten Larvenstadium rekrutiert R8 die Sehzellpaare R2/R5, R3/R4 und R1/R6. Dabei werden R1-R6 durch den Kontakt zu R8 „polarisiert". Abschließend wird R7 durch R8 rekrutiert. Dies f{\"u}hrt zu einer Fixierung der Polarit{\"a}t von R1-R6 durch R7. Die Ausf{\"u}hrung der Mikrovillikippung anhand der festgelegten Polarit{\"a}t erfolgt in der sp{\"a}ten Puppenphase. Die Proteinkinase ERK ist an diesem letzten Morphogeneseprozess beteiligt.},
  language  = {de}
}
@phdthesis{Zamagni2009,
  author    = {Zamagni, Jessica},
  title     = {Responses of a shallow-water ecosystem to the early Paleogene greenhouse environmental conditions : evolution of Larger Foraminifera and coral communities from the Northern Tethys},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-31853},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Modern anthropogenic forcing of atmospheric chemistry poses the question of how the Earth System will respond as thousands of gigatons of greenhouse gas are rapidly added to the atmosphere. A similar, albeit nonanthropogenic, situation occurred during the early Paleogene, when catastrophic release of carbon to the atmosphere triggered abrupt increase in global temperatures. The best documented of these events is the Paleocene-Eocene Thermal Maximum (PETM, ~55 Ma) when the magnitude of carbon addition to the oceans and atmosphere was similar to those expected for the future. This event initiated global warming, changes in hydrological cycles, biotic extinction and migrations. A recently proposed hypothesis concerning changes in marine ecosystems suggests that this global warming strongly influenced the shallow-water biosphere, triggering extinctions and turnover in the Larger Foraminifera (LF) community and the demise of corals. The successions from the Adriatic Carbonate Platform (SW Slovenia) represent an ideal location to test the hypothesis of a possible causal link between the PETM and evolution of shallow-water organisms because they record continuous sedimentation from the Late Paleocene to the Early Eocene and are characterized by a rich biota, especially LF, fundamental for detailed biostratigraphic studies. In order to reconstruct paleoenvironmental conditions during deposition, I focused on sedimentological analysis and paleoecological study of benthic assemblages. During the Late Paleocene-earliest Eocene, sedimentation occurred on a shallow-water carbonate ramp system characterized by enhanced nutrient levels. LF represent the common constituent of the benthic assemblages that thrived in this setting throughout the Late Paleocene to the Early Eocene. With detailed biostratigraphic and chemostratigraphic analyses documenting the most complete record to date available for the PETM event in a shallow-water marine environment, I correlated chemostratigraphically for the first time the evolution of LF with the δ¹³C curves. This correlation demonstrated that no major turnover in the LF communities occurred synchronous with the PETM; thus the evolution of LF was mainly controlled by endogenous biotic forces. The study of Late Thanetian metric-sized microbialite-coral mounds which developed in the middle part of the ramp, documented the first Cenozoic occurrence of microbially-cemented mounds. The development of these mounds, with temporary dominance of microbial communities over corals, suggest environmentally-triggered "phase shifts" related to frequent fluctuations of nutrient/turbidity levels during recurrent wet phases which preceding the extreme greenhouse conditions of the PETM. The paleoecological study of the coral community in the microbialites-coral mounds, the study of corals from Early Eocene platform from SW France, and a critical, extensive literature research of Late Paleocene - Early Eocene coral occurrences from the Tethys, the Atlantic, the Caribbean realms suggested that these corals types, even if not forming extensive reefs, are common in the biofacies as small isolated colonies, piles of rubble or small patch-reefs. These corals might have developed 'alternative' life strategies to cope with harsh conditions (high/fluctuating nutrients/turbidity, extreme temperatures, perturbation of aragonite saturation state) during the greenhouse times of the early Paleogene, representing a good fossil analogue to modern corals thriving close to their thresholds for survival. These results demonstrate the complexity of the biological responses to extreme conditions, not only in terms of temperature but also nutrient supply, physical disturbance and their temporal variability and oscillating character.},
  language  = {en}
}
@phdthesis{Koehler2009,
  author    = {K{\"o}hler, Andreas},
  title     = {Recognition and investigation of temporal patterns in seismic wavefields using unsupervised learning techniques},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-29702},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Modern acquisition of seismic data on receiver networks worldwide produces an increasing amount of continuous wavefield recordings. Hence, in addition to manual data inspection, seismogram interpretation requires new processing utilities for event detection, signal classification and data visualization. Various machine learning algorithms, which can be adapted to seismological problems, have been suggested in the field of pattern recognition. This can be done either by means of supervised learning using manually defined training data or by unsupervised clustering and visualization. The latter allows the recognition of wavefield patterns, such as short-term transients and long-term variations, with a minimum of domain knowledge. Besides classical earthquake seismology, investigations of temporal patterns in seismic data also concern novel approaches such as noise cross-correlation or ambient seismic vibration analysis in general, which have moved into focus within the last decade. In order to find records suitable for the respective approach or simply for quality control, unsupervised preprocessing becomes important and valuable for large data sets. Machine learning techniques require the parametrization of the data using feature vectors. Applied to seismic recordings, wavefield properties have to be computed from the raw seismograms. For an unsupervised approach, all potential wavefield features have to be considered to reduce subjectivity to a minimum. Furthermore, automatic dimensionality reduction, i.e. feature selection, is required in order to decrease computational cost, enhance interpretability and improve discriminative power. This study presents an unsupervised feature selection and learning approach for the discovery, imaging and interpretation of significant temporal patterns in seismic single-station or network recordings. In particular, techniques permitting an intuitive, quickly interpretable and concise overview of available records are suggested. For this purpose, the data is parametrized by real-valued feature vectors for short time windows using standard seismic analysis tools as feature generation methods, such as frequency-wavenumber, polarization, and spectral analysis. The choice of the time window length is dependent on the expected durations of patterns to be recognized or discriminated. We use Self-Organizing Maps (SOMs) for a data-driven feature selection, visualization and clustering procedure, which is particularly suitable for high-dimensional data sets. Using synthetics composed of Rayleigh and Love waves and three different types of real-world data sets, we show the robustness and reliability of our unsupervised learning approach with respect to the effect of algorithm parameters and data set properties. Furthermore, we approve the capability of the clustering and imaging techniques. For all data, we find improved discriminative power of our feature selection procedure compared to feature subsets manually selected from individual wavefield parametrization methods. In particular, enhanced performance is observed compared to the most favorable individual feature generation method, which is found to be the frequency spectrum. The method is applied to regional earthquake records at the European Broadband Network with the aim to define suitable features for earthquake detection and seismic phase classification. For the latter, we find that a combination of spectral and polarization features favor S wave detection at a single receiver. However, SOM-based visualization of phase discrimination shows that clustering applied to the records of two stations only allows onset or P wave detection, respectively. In order to improve the discrimination of S waves on receiver networks, we recommend to consider additionally the temporal context of feature vectors. The application to continuous recordings of seismicity close to an active volcano (Mount Merapi, Java, Indonesia) shows that two typical volcano-seismic events (VTB and Guguran) can be detected and distinguished by clustering. In contrast, so-called MP events cannot be discriminated. Comparable results are obtained for selected features and recognition rates regarding a previously implemented supervised classification system. Finally, we test the reliability of wavefield clustering to improve common ambient vibration analysis methods such as estimation of dispersion curves and horizontal to vertical spectral ratios. It is found, that in general, the identified short- and long-term patterns have no significant impact on those estimates. However, for individual sites, effects of local sources can be identified. Leaving out the corresponding clusters, yields reduced uncertainties or allows for improving estimation of dispersion curves.},
  language  = {en}
}
@phdthesis{Zimmermann2009,
  author    = {Zimmermann, Alexander},
  title     = {Rainfall redistribution and change of water quality in tropical forest canopies : patterns and persistence},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-32556},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Motivations and research objectives: During the passage of rain water through a forest canopy two main processes take place. First, water is redistributed; and second, its chemical properties change substantially. The rain water redistribution and the brief contact with plant surfaces results in a large variability of both throughfall and its chemical composition. Since throughfall and its chemistry influence a range of physical, chemical and biological processes at or below the forest floor the understanding of throughfall variability and the prediction of throughfall patterns potentially improves the understanding of near-surface processes in forest ecosystems. This thesis comprises three main research objectives. The first objective is to determine the variability of throughfall and its chemistry, and to investigate some of the controlling factors. Second, I explored throughfall spatial patterns. Finally, I attempted to assess the temporal persistence of throughfall and its chemical composition. Research sites and methods: The thesis is based on investigations in a tropical montane rain forest in Ecuador, and lowland rain forest ecosystems in Brazil and Panama. The first two studies investigate both throughfall and throughfall chemistry following a deterministic approach. The third study investigates throughfall patterns with geostatistical methods, and hence, relies on a stochastic approach. Results and Conclusions: Throughfall is highly variable. The variability of throughfall in tropical forests seems to exceed that of many temperate forests. These differences, however, do not solely reflect ecosystem-inherent characteristics, more likely they also mirror management practices. Apart from biotic factors that influence throughfall variability, rainfall magnitude is an important control. Throughfall solute concentrations and solute deposition are even more variable than throughfall. In contrast to throughfall volumes, the variability of solute deposition shows no clear differences between tropical and temperate forests, hence, biodiversity is not a strong predictor of solute deposition heterogeneity. Many other factors control solute deposition patterns, for instance, solute concentration in rainfall and antecedent dry period. The temporal variability of the latter factors partly accounts for the low temporal persistence of solute deposition. In contrast, measurements of throughfall volume are quite stable over time. Results from the Panamanian research site indicate that wet and dry areas outlast consecutive wet seasons. At this research site, throughfall exhibited only weak or pure nugget autocorrelation structures over the studies lag distances. A close look at the geostatistical tools at hand provided evidence that throughfall datasets, in particular those of large events, require robust variogram estimation if one wants to avoid outlier removal. This finding is important because all geostatistical throughfall studies that have been published so far analyzed their data using the classical, non-robust variogram estimator.},
  language  = {en}
}
@phdthesis{Dokić2009,
  author    = {Dokić, Jadranka},
  title     = {Quantum mechanical study of molecular switches : electronic structure, kinetics and dynamical aspects},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-41796},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Molecular photoswitches are attracting much attention lately mostly because of their possible applications in nano technology, and their role in biology. One of the widely studied representatives of photochromic molecules is azobenzene (AB). With light, by a static electric field, or with tunneling electrons this specie can be "switched" from the flat and energetically more stable trans form, into the compact cis form. The back reaction can be induced optically or thermally. Quantum chemical calculations, mostly based on density functional theory, on the AB molecule, AB derivatives and related systems are presented. All the calculations were done for isolated species, however, with implications for latest experimental results aiming at the switching of surface mounted ABs. In some of these experiments, it is assumed that the switching process is substrate mediated, by attaching an electron or a hole to the adsorbate forming short-lived anion or cation resonances. Therefore, we calculated also cationic and anionic ABs in this work. An influence of external electric fields on the potential energy surfaces, was also studied. Further, by the type, number and positioning of various substituent groups, systematic changes on activation energies and rates for the thermal cis-to-trans isomerization can be enforced. The nature of the transition state for ground state isomerization was investigated. Applying Eyring's transition state theory, trends in activation energies and rates were predicted and are, where a comparison was possible, in good agreement with experimental data. Further, thermal isomerization was studied in solution, for which a polarizable continuum model was employed. The influence of substitution and an environment leaves its traces on structural properties of molecules and quantitative appearance of calculated UV/Vis spectra, as well. Finally, an explicit treatment of a solid substrate was demonstrated for the conformational switching, by scanning tunneling microscope, of a 1,5-cyclooctadiene (COD) molecule at a Si(001) surface, treated by a cluster model. At first, we studied energetics and potential energy surfaces along relevant switching coordinates by quantum chemical calculations, followed by the switching dynamics using wave packet methods. We show that, in spite the simplicity of the model, our calculations support the switching of adsorbed COD, by inelastic electron tunneling at low temperatures.},
  language  = {en}
}
@phdthesis{Kuhnert2009,
  author    = {Kuhnert, Matthias},
  title     = {Quantifizierung von Oberfl{\"a}chenabfluss und Erosion auf B{\"o}den mit hydrophoben Eigenschaften},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-32871},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Die Zielsetzung der vorliegenden Arbeit ist die Beschreibung hydrophober Bodeneigenschaften und deren Auswirkungen auf Oberfl{\"a}chenabfluss und Erosion auf verschiedenen Skalen. Die dazu durchgef{\"u}hrten Untersuchungen fanden auf einer Rekultivierungsfl{\"a}che im Braunkohlegebiet Welzow S{\"u}d (S{\"u}dostdeutschland) statt. Die Prozesse wurden auf drei Skalen untersucht, die von der Plotskala (1m²) {\"u}ber die Hangskala (300m²) bis zur Betrachtung eines kleinen Einzugsgebietes (4ha) reichen. Der Grad der hydrophoben Bodeneigenschaften wurde sowohl direkt, {\"u}ber die Bestimmung des Kontaktwinkel, als auch indirekt, {\"u}ber die Bestimmung der Persistenz, ermittelt. Dabei zeigte sich, dass der Boden im Winterhalbjahr hydrophil reagierte, w{\"a}hrend er im Sommerhalbjahr hydrophobe Bodeneigenschaften aufwies. Die Ergebnisse deuten darauf hin, dass ansteigende Bodenwassergehalte, die in der Literatur h{\"a}ufig als Ursache f{\"u}r einen Wechsel der Bodeneigenschaften angegeben werden, auf dieser Fl{\"a}che nicht zu einem Umbruch der Bodenbedingungen f{\"u}hren. Stattdessen kam es als Folge des Auftauens von gefrorenem Boden zu hydrophilen Bodeneigenschaften, die zu einem Anstieg des Bodenwassergehalts f{\"u}hrten. R{\"a}umliche Unterschiede zeigten sich in den geomorphologischen Einheiten. Rinnen und Rillen wiesen seltener hydrophobe Eigenschaften als die Zwischenrillenbereiche und Kuppen auf. Diese r{\"a}umlichen und zeitlichen Variabilit{\"a}ten wirkten sich auch auf den Oberfl{\"a}chenabfluss aus, der als Abflussbeiwert (ABW: Quotient aus Abfluss und Niederschlag) untersucht wurde. Der ABW liegt auf B{\"o}den mit hydrophoben Bodeneigenschaften (ABW=0,8) deutlich h{\"o}her als bei jenen mit hydrophilen Eigenschaften(ABW=0,2), wie sie im Winter oder auf anderem Substrat vorzufinden sind (diese Werte beziehen sich auf die Plotskala). Betrachtet man die Auswirkungen auf unterschiedlichen Skalen, nimmt der Abflussbeiwert mit zunehmender Fl{\"a}chengr{\"o}ße ab (ABW = 0,8 auf der Plotskala, ABW = 0,5 auf der Hangskala und ABW = 0,2 im gesamten Gebiet), was in den hydrophil reagierenden Rillen und Rinnen auf der Hangskala und dem hydrophilen Substrat im Einzugsgebiet begr{\"u}ndet ist. Zur Messung der Erosion wurden verschiedene, zum Teil neu entwickelte Methoden eingesetzt, um eine hohe zeitliche und r{\"a}umliche Aufl{\"o}sung zu erreichen. Bei einer neu entwickelten Methode wird der Sedimentaustrag ereignisbezogen {\"u}ber eine Waage bestimmt. In Kombination mit einer Kippwaage erm{\"o}glicht sie die gleichzeitige Messung des Oberfl{\"a}chenabflusses. Die Messapparatur wurde f{\"u}r Gebiete entwickelt, die eine {\"u}berwiegend grobsandige Textur aufweisen und nur geringe Mengen Ton und Schluff enthalten. Zus{\"a}tzlich wurden zwei Lasersysteme zur Messung der r{\"a}umlichen Verteilung der Erosion eingesetzt. F{\"u}r die erste Methode wurde ein punktuell messender Laser in einer fest installierten Apparatur {\"u}ber die Fl{\"a}che bewegt und punktuell H{\"o}henunterschiede in einem festen Raster bestimmt. Durch Interpolation konnten Bereiche mit Sedimentabtrag von Akkumulationsbereiche unterschieden werden. Mit dieser Methode k{\"o}nnen auch gr{\"o}ßere Fl{\"a}chen vermessen werden (hier 16 m²), allerdings weisen die Messungen in den {\"U}bergangsbereichen von Rinne zu Zwischenrille große Fehler auf. Bei der zweiten Methode wird mit einer Messung ein Quadratmeter mit einer hohen r{\"a}umlichen Aufl{\"o}sung komplett erfasst. Um ein dreidimensionales Bild zu erstellen, m{\"u}ssen insgesamt vier Aufnahmen von jeweils unterschiedlichen Seiten aufgenommen werden. So lassen sich Abtrag und Akkumulation sehr genau bestimmen, allerdings ist die Messung relativ aufwendig und erfasst nur eine kleine Fl{\"a}che. Zus{\"a}tzlich wurde der Sedimentaustrag noch auf der Plotskala erfasst. Die Messungen zeigen, korrespondierend zu den Bodeneigenschaften, große Sedimentaustr{\"a}ge w{\"a}hrend des Sommerhalbjahrs und kaum Austr{\"a}ge im Winter. Weiterhin belegen die Ergebnisse eine gr{\"o}ßere Bedeutung der Rillenerosion gegen{\"u}ber der Zwischenrillenerosion f{\"u}r Niederschlagsereignisse hoher Intensit{\"a}t (>25 mm/h in einem zehnmin{\"u}tigem Intervall). Im Gegensatz dazu dominierte die Zwischenrillenerosion bei Ereignissen geringerer Intensit{\"a}t (<20 mm/h in einem zehnmin{\"u}tigem Intervall), wobei mindestens 9 mm Niederschlag in einer Intensit{\"a}t von mindesten 3,6 mm/h n{\"o}tig sind, damit es zur Erosion kommt. Basierend auf den gemessenen Abfl{\"u}ssen und Sedimentaustr{\"a}gen wurden Regressiongleichungen abgeleitet, die eine Berechnung dieser beiden Prozesse f{\"u}r die untersuchte Fl{\"a}che erm{\"o}glichen. W{\"a}hrend die Menge an Oberfl{\"a}chenabfluss einen starken Zusammenhang zu der Menge an gefallenem Niederschlag zeigt (r² = 0,9), ist die Berechnung des ausgetragenen Sedimentes eher ungenau (r² = 0,7). Zusammenfassend beschreibt die Arbeit Einfl{\"u}sse hydrophober Bodeneigenschaften auf verschiedenen Skalen und arbeitet die Auswirkungen, die vor allem auf der kleinen Skala von großer Bedeutung sind, heraus.},
  language  = {de}
}
@phdthesis{ElSaadany2009,
  author    = {El-Saadany, Mohamed Abdel Meged Marawan},
  title     = {Protective effect of dietary antioxidants and plant extracts on acute inflammation and hepatotoxicity in vitro},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-31585},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Dietary antioxidants are believed to play an important role in the prevention and treatment of a variety of diseases associated with oxidative stress. Although there is a wide range of dietary antioxidants, the bulk of the research to date has been focused on the nutrient antioxidants vitamin C, E, and carotenoids. Certain relatively uncommon antioxidants such as lipoic acid (LA), and phenolic compounds such as (-)-epicatechin (EC), (-)-epigallocatechin (EGC), (-)-epicatechin gallate (ECG), and (-)-epigallocatechin gallate (EGCG), have not been extensively investigated although they may exert greater antioxidant potency than that of carotenoids and vitamins. Extracts from selected plants and plant byproducts may represent rich sources for one or more of such antioxidants and therefore exhibit higher effects than a single antioxidant due to the synergistic effects produced between such antioxidants. However, in the last decade a number of epidemiological, animal and in vitro studies have suggested a protective and therapeutic potency of these antioxidants in a broad range of diseases such as cancer, diabetes, atherosclerosis, cataract and acute and chronic neurological disorders. Inflammation, the response of the host toward any infection or injury, plays a central role in the development of many chronic diseases. Several evidences demonstrated the rise of different types of cancer from sites of inflammation. This suggests that active oxygen species and some cytokines generated in the inflamed tissues can cause injury to DNA and ultimately lead to carcinogenesis. Diethylnitrosamine (DEN) is one of the most important environmental carcinogens, present in a variety of foods, alcoholic beverages, tobacco smoke and it can be synthesized endogenously. In addition to the liver it can induce carcinogenesis in other organs like kidney, trachea, lung, esophagus, fore stomach, and nasal cavity. Several epidemiological and laboratory studies indicate that nitroso compounds including DEN may induce hyperplasia and chronic inflammation which is closely associated with the development of hepatocellular carcinoma. Despite increasing evidence on the potential of antioxidants in modulating the etiology of chronic diseases, little is known about their role in inflammation and acute phase response (APR). Therefore the aim of the present work was to study the protective effect of water and solvent extracts of eight plant and plant byproducts including green tea, artichoke, spinach, broccoli, onion and eggplant, orange and potato peels as well as eight antioxidants agents including EC, EGC, ECG, EGCG, ascorbic acid (AA), acetylcysteine (NAC), α-LA, and alpha-tocopherol (α-TOC) toward acute inflammation induced by interleukin-6 (IL-6) and hepatotoxicity induced by DEN in vitro. The negative acute phase proteins (APP), transthyretin (TTR) and retinol-binding protein (RBP) were used as inflammatory biomarkers analyzed by ELISA, whereas neutral red assay was used for evaluating the cytotoxicity. All experiments were performed in vitro using human hepatocarcinoma cell line (HepG2). Additionally the antioxidant activity was measured by TEAC and FRAP assays, phenolic content was measured by Folin-Ciocalteu and characterized by HPLC. Moreover, the microheterogeneity of TTR was detected using immunoprecipitation assay combined with SELDI-TOF MS. Results of present study showed that HepG2 cells provide a simple, sensitive in vitro system for studying the regulation of the negative APP, TTR and RBP under free and inflammatory condition. IL-6, a potent proinflammatory cytokine, in a concentration of 25 ng/ml was able to reduce TTR and RBP secretion by approximately 50-60\% after 24h of incubation. With exception of broccoli and water extract of onion which showed pro-inflammatory effects in this study, all other plant extracts, at specific concentrations, were able to elevate TTR secretion in normal condition and even under treatment of IL-6 where the effect was quite lower. Green tea followed by artichoke and potato peel exhibited the highest elevation in TTR concentration which reached 1.1 and 2.5 folds of control in presence and absences of IL-6 respectively. In general Plant extracts were ordered according their anti-inflammatory potency as following: in water extracts; green tea > artichoke > potato peel > orange peel > spinach > eggplant peel, where in solvent extracts; green tea > artichoke > potato peel > spinach > eggplant peel > onion > orange peel. The antiinflammatory effect of water extracts of green tea, artichoke and orange peel were significantly higher than their corresponding solvent extracts whereas water extracts of eggplant-, potato peels and spinach showed lower effect than their solvent extracts. On the other hand α-LA followed by EGCG and ECG exhibited the highest elevation in TTR concentration compared to other antioxidants. The relation between the anti-inflammatory potential and antioxidants activity and phenolic content for the investigated substances was generally weak. This may suggest the involvement of other mechanisms than antioxidants properties for the observed effect. TTR secreted by HepG2 cells has a molecular structure quite similar to the purified standard and serum TTR in which all the three main variants are contained including native, S-cystinylated and Sglutathionylated TTR. Interestingly, a variant with molecular mass of 13453.8 + 8.3 Da has been detected only in TTR secreted by HepG2. Among all investigated antioxidants and plant extracts, six substances were able to elevate the native preferable TTR variant. The potency of these substances can be ordered as following α-LA > NAC > onion > AA > EGCG > green tea. A weak correlation between elevation on TTR and shifting to the native form was observed. Similar weak correlation has also been observed between antioxidants activity and elevation in native TTR. Although DEN was able to induce cell death in a concentration dependent manner, it requires considerably higher concentrations for its effects especially after 24h. This may be attributed to a lack in cytochrome P450 enzymes produced by HepG2. At selected concentrations some antioxidants and plant extracts significantly attenuate DEN cytotoxicity as following: spinach > α-LA > artichoke > orange peel > eggplant peel > α-TOC > onion > AA. Contrary all other substances especially green tea, broccoli, potato peel, and ECG stimulate DEN toxicity. In conclusion, this study demonstrated that selected antioxidants and plant extracts may attenuate the inflammatory process, not only by their antioxidants potency but also by other mechanisms which remain unclear. They may also play a vital role on stabilizing the tetramic structure of TTR and thereby prevent amyloidosis diseases. Lipoic acid represents in this study unique function against inflammation and hepatotoxicity. Despite the protective effect demonstrated by investigated substances, attention should also be given to the pro-oxidant and potential cytotoxic effects produced at higher concentrations.},
  language  = {en}
}
@phdthesis{Nikolovski2009,
  author    = {Nikolovski, Nino},
  title     = {Pectin: New insights from an old polymer through pectinase-based genetic screens},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-35255},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Pectic polysaccharides, a class of plant cell wall polymers, form one of the most complex networks known in nature. Despite their complex structure and their importance in plant biology, little is known about the molecular mechanism of their biosynthesis, modification, and turnover, particularly their structure-function relationship. One way to gain insight into pectin metabolism is the identification of mutants with an altered pectin structure. Those were obtained by a recently developed pectinase-based genetic screen. Arabidopsis thaliana seedlings grown in liquid medium containing pectinase solutions exhibited particular phenotypes: they were dwarfed and slightly chlorotic. However, when genetically different A. thaliana seed populations (random T-DNA insertional populations as well as EMS-mutagenized populations and natural variations) were subjected to this treatment, individuals were identified that exhibit a different visible phenotype compared to wild type or other ecotypes and may thus contain a different pectin structure (pec-mutants). After confirming that the altered phenotype occurs only when the pectinase is present, the EMS mutants were subjected to a detailed cell wall analysis with particular emphasis on pectins. This suite of mutants identified in this study is a valuable resource for further analysis on how the pectin network is regulated, synthesized and modified. Flanking sequences of some of the T-DNA lines have pointed toward several interesting genes, one of which is PEC100. This gene encodes a putative sugar transporter gene, which, based on our data, is implicated in rhamnogalacturonan-I synthesis. The subcellular localization of PEC100 was studied by GFP fusion and this protein was found to be localized to the Golgi apparatus, the organelle where pectin biosynthesis occurs. Arabidopsis ecotype C24 was identified as a susceptible one when grown with pectinases in liquid culture and had a different oligogalacturonide mass profile when compared to ecotype Col-0. Pectic oligosaccharides have been postulated to be signal molecules involved in plant pathogen defense mechanisms. Indeed, C24 showed elevated accumulation of reactive oxygen species upon pectinase elicitation and had altered response to the pathogen Alternaria brassicicola in comparison to Col-0. Using a recombinant inbred line population three major QTLs were identified to be responsible for the susceptibility of C24 to pectinases. In a reverse genetic approach members of the qua2 (putative pectin methyltransferase) family were tested for potential target genes that affect pectin methyl-esterification. The list of these genes was determined by in silico study of the pattern of expression and co-expression of all 34 members of this family resulting in 6 candidate genes. For only for one of the 6 analyzed genes a difference in the oligogalacturonide mass profile was observed in the corresponding knock-out lines, confirming the hypothesis that the methyl-esterification pattern of pectin is fine tuned by members of this gene family. This study of pectic polysaccharides through forward and reverse genetic screens gave new insight into how pectin structure is regulated and modified, and how these modifications could influence pectin mediated signalling and pathogenicity.},
  language  = {en}
}
@phdthesis{Glikman2009,
  author    = {Glikman, Julie},
  title     = {Parataxe et subordination en ancien fran{\c{c}}ais},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-56784},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Parataxe et subordination, ces deux termes, parfois antith{\´e}tiques, sont probl{\´e}matiques du fait m{\^e}me de leur extr{\^e}me polys{\´e}mie. C'est de cette ambigu{\"i}t{\´e} que na{\^i}t l'objet d'{\´e}tude, les constructions asynd{\´e}tiques, au statut incertain entre int{\´e}gration et ind{\´e}pendance. Dans cette th{\`e}se, nous proposons de r{\´e}interroger ce ph{\´e}nom{\`e}ne ancien et d{\´e}j{\`a} bien connu en ancien fran{\c{c}}ais, en le mettant en regard des remises en question et avanc{\´e}es des recherches actuelles sur le sujet. Pour cela, il nous faut tout d'abord poser une d{\´e}finition de ce qu'est la subordination. Nous montrons ensuite que les constructions asynd{\´e}tiques sont bien des cas de subordination. Cette th{\`e}se {\´e}tablit enfin que ce ph{\´e}nom{\`e}ne constitue, en ancien fran{\c{c}}ais du moins, une variante libre en syntaxe. Sa r{\´e}partition et sa pr{\´e}sence dans les textes a cependant tr{\`e}s t{\^o}t diminu{\´e}, mais l'existence de ph{\´e}nom{\`e}nes parall{\`e}les en fran{\c{c}}ais moderne, tout comme d'autres indices, nous permettent de faire l'hypoth{\`e}se que cette {\´e}volution tient d'une alternance oral / {\´e}crit. Cette th{\`e}se montre ainsi que les probl{\`e}mes, comme les enjeux, ne diff{\`e}rent finalement pas, quel que soit l'{\´e}tat de langue et que la parataxe constitue bien une construction dans le syst{\`e}me de la langue.},
  language  = {fr}
}
@phdthesis{Bojdys2009,
  author    = {Bojdys, Michael Janus},
  title     = {On new allotropes and nanostructures of carbon nitrides},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-41236},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {In the first section of the thesis graphitic carbon nitride was for the first time synthesised using the high-temperature condensation of dicyandiamide (DCDA) - a simple molecular precursor - in a eutectic salt melt of lithium chloride and potassium chloride. The extent of condensation, namely next to complete conversion of all reactive end groups, was verified by elemental microanalysis and vibrational spectroscopy. TEM- and SEM-measurements gave detailed insight into the well-defined morphology of these organic crystals, which are not based on 0D or 1D constituents like known molecular or short-chain polymeric crystals but on the packing motif of extended 2D frameworks. The proposed crystal structure of this g-C3N4 species was derived in analogy to graphite by means of extensive powder XRD studies, indexing and refinement. It is based on sheets of hexagonally arranged s-heptazine (C6N7) units that are held together by covalent bonds between C and N atoms. These sheets stack in a graphitic, staggered fashion adopting an AB-motif, as corroborated by powder X-ray diffractometry and high-resolution transmission electron microscopy. This study was contrasted with one of many popular - yet unsuccessful - approaches in the last 30 years of scientific literature to perform the condensation of an extended carbon nitride species through synthesis in the bulk. The second section expands the repertoire of available salt melts introducing the lithium bromide and potassium bromide eutectic as an excellent medium to obtain a new phase of graphitic carbon nitride. The combination of SEM, TEM, PXRD and electron diffraction reveals that the new graphitic carbon nitride phase stacks in an ABA' motif forming unprecedentedly large crystals. This section seizes the notion of the preceding chapter, that condensation in a eutectic salt melt is the key to obtain a high degree of conversion mainly through a solvatory effect. At the close of this chapter ionothermal synthesis is seen established as a powerful tool to overcome the inherent kinetic problems of solid state reactions such as incomplete polymerisation and condensation in the bulk especially when the temperature requirement of the reaction in question falls into the proverbial "no man's land" of classical solvents, i.e. above 250 to 300 °C. The following section puts the claim to the test, that the crystalline carbon nitrides obtained from a salt melt are indeed graphitic. A typical property of graphite - namely the accessibility of its interplanar space for guest molecules - is transferred to the graphitic carbon nitride system. Metallic potassium and graphitic carbon nitride are converted to give the potassium intercalation compound, K(C6N8)3 designated according to its stoichiometry and proposed crystal structure. Reaction of the intercalate with aqueous solvents triggers the exfoliation of the graphitic carbon nitride material and - for the first time - enables the access of singular (or multiple) carbon nitride sheets analogous to graphene as seen in the formation of sheets, bundles and scrolls of carbon nitride in TEM imaging. The thus exfoliated sheets form a stable, strongly fluorescent solution in aqueous media, which shows no sign in UV/Vis spectroscopy that the aromaticity of individual sheets was subject to degradation. The final section expands on the mechanism underlying the formation of graphitic carbon nitride by literally expanding the distance between the covalently linked heptazine units which constitute these materials. A close examination of all proposed reaction mechanisms to-date in the light of exhaustive DSC/MS experiments highlights the possibility that the heptazine unit can be formed from smaller molecules, even if some of the designated leaving groups (such as ammonia) are substituted by an element, R, which later on remains linked to the nascent heptazine. Furthermore, it is suggested that the key functional groups in the process are the triazine- (Tz) and the carbonitrile- (CN) group. On the basis of these assumptions, molecular precursors are tailored which encompass all necessary functional groups to form a central heptazine unit of threefold, planar symmetry and then still retain outward functionalities for self-propagated condensation in all three directions. Two model systems based on a para-aryl (ArCNTz) and para-biphenyl (BiPhCNTz) precursors are devised via a facile synthetic procedure and then condensed in an ionothermal process to yield the heptazine based frameworks, HBF-1 and HBF-2. Due to the structural motifs of their molecular precursors, individual sheets of HBF-1 and HBF-2 span cavities of 14.2 {\AA} and 23.0 {\AA} respectively which makes both materials attractive as potential organic zeolites. Crystallographic analysis confirms the formation of ABA' layered, graphitic systems, and the extent of condensation is confirmed as next-to-perfect by elemental analysis and vibrational spectroscopy.},
  language  = {en}
}
@phdthesis{Mailer2009,
  author    = {Mailer, Tina},
  title     = {Neon, Helium and Argon isotope systematics of the Hawaiian hotspot},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-39633},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {This study presents noble gas compositions (He, Ne, Ar, Kr, and Xe) of lavas from several Hawaiian volcanoes. Lavas from the Hawaii Scientific Drilling Project (HSDP) core, surface samples from Mauna Kea, Mauna Loa, Kilauea, Hualalai, Kohala and Haleakala as well as lavas from a deep well on the summit of Kilauea were investigated. Noble gases, especially helium, are used as tracers for mantle reservoirs, based on the assumption that high 3He/4He ratios (>8 RA) represent material from the deep and supposedly less degassed mantle, whereas lower ratios (~ 8 RA) are thought to represent the upper mantle. Shield stage Mauna Kea, Kohala and Kilauea lavas yielded MORB-like to moderately high 3He/4He ratios, while 3He/4He ratios in post-shield stage Haleakala lavas are MORB-like. Few samples show 20Ne/22Ne and 21Ne/22Ne ratios different from the atmospheric values, however, Mauna Kea and Kilauea lavas with excess in mantle Ne agree well with the Loihi-Kilauea line in a neon three-isotope plot, whereas one Kohala sample plots on the MORB correlation line. The values in the 4He/40Ar* (40Ar* denotes radiogenic Ar) versus 4He diagram imply open system fractionation of He from Ar, with a deficiency in 4He. Calculated 4He/40Ar*, 3He/22Nes (22NeS denotes solar Ne) and 4He/21Ne ratios for the sample suite are lower than the respective production and primordial ratios, supporting the observation of a fractionation of He from the heavier noble gases, with a depletion of He with respect to Ne and Ar. The depletion of He is interpreted to be partly due to solubility controlled gas loss during magma ascent. However, the preferential He loss suggests that He is more incompatible than Ne and Ar during magmatic processes. In a binary mixing model, the isotopic He and Ne pattern are best explained by a mixture of a MORB-like end-member with a plume like or primordial end-member with a fractionation in 3He/22Ne, represented by a curve parameter r of 15 (r=(³He/²²Ne)MORB/(³He/²²Ne)PLUME or PRIMORDIAL). Whether the high 3He/4He ratios in Hawaiian lavas are indicative of a primitive component within the Hawaiian plume or are rather a product of the crystal-melt- partitioning behavior during partial melting remains to be resolved.},
  language  = {en}
}
@phdthesis{Kroeller2009,
  author    = {Kr{\"o}ller, Katja},
  title     = {M{\"u}tterliche Steuerung in der Essenssituation},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-33682},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Die Etablierung eines gesunden Ern{\"a}hrungsverhaltens unserer Kinder ist die wichtigste Voraussetzung f{\"u}r ihre k{\"o}rperliche, kognitive und emotionale Entwicklung. Dabei sind neben einer genetischen Disposition und kulturellen Gegebenheiten vor allem die Einfl{\"u}sse der jeweiligen Betreuungspersonen ausschlaggebend. Die Eltern steuern sowohl direkt (durch Aufforderungen, Verbote u.{\"a}.) als auch indirekt (durch die F{\"o}rderung eigenverantwortlicher Entscheidungen u.{\"a}.) das Ern{\"a}hrungsverhalten ihres Kindes. Untersuchungen zum m{\"u}tterlichen Steuerungsverhalten konzentrierten sich bisher vorwiegend auf die Betrachtung direkter Strategien sowie auf altershomogene und sozial besser gestellte Gruppen. Aufgrund m{\"o}glicher Verzerrungen durch die Betrachtung einzelner Ausschnitte des Zusammenhangs zwischen Steuerung und Ern{\"a}hrung wurde in der vorliegenden Arbeit ein Gesamtmodell spezifiziert, welches den Zusammenhang zwischen elterlicher Steuerung und kindlicher Ern{\"a}hrung unter Ber{\"u}cksichtigung von Sozial- und Gewichtsfaktoren abbildet. Dazu wurden drei Erhebungen mit insgesamt {\"u}ber 900 M{\"u}ttern 1 - 10-j{\"a}hriger Kinder durchgef{\"u}hrt. Innerhalb dieser Untersuchungen ist es gelungen, erstmalig ein deutschsprachiges Instrument zur Messung elterlicher Steuerungsstrategien in der Essenssituation (ISS) zu entwickeln. Die Analysen zeigten, dass bisher nur selten untersuchte Strategien, wie das explizite Bem{\"u}hen um Vorbildwirkung und das Erlauben von eigenverantwortlichen Entscheidungen des Kindes, von den M{\"u}ttern h{\"a}ufig angewandt werden. Die Analyse des komplexen Wirkungsgef{\"u}ge von Steuerung, kindlicher Ern{\"a}hrung sowie sozialer und gewichtsbezogener Faktoren zeigte weiterhin, dass neben stabilen Faktoren, wie dem m{\"u}tterlichen Status und dem Alter des Kindes, ein entscheidender Anteil der m{\"u}tterlichen Steuerungsstrategien f{\"u}r die kindliche Ern{\"a}hrung verantwortlich ist. Die berichteten Ergebnisse zeigen auf, wie relevant die gemeinsame Betrachtung von gesunden und problematischen Nahrungsmitteln sowie die den Zusammenhang zwischen Steuerung und Ern{\"a}hrung beeinflussenden Faktoren innerhalb eines Modells ist. Zusammengefasst scheint vor allem die Steuerung durch Belohnung von und mit bestimmten Nahrungsmitteln eine f{\"u}r das kindliche Ern{\"a}hrungsverhalten und das {\"U}bergewichtsrisiko besonders kritische Strategie zu sein. Dies ist umso bedeutender, als bisherige Untersuchungen dieses Verhalten h{\"a}ufig in restriktive Strategien integriert betrachteten. Die separate Analyse wies jedoch darauf hin, dass vor allem die belohnenden Verhaltensanteile relevant sind. Dies zeigt, dass es f{\"u}r die Entwicklung einer gesunden kindlichen Ern{\"a}hrung tats{\"a}chlich ver{\"a}nderbare Verhaltensweisen gibt, die Eltern in Pr{\"a}ventionsprogrammen oder anderen mit Kursen zum kindlichen Wohl assoziierten Einrichtungen vermittelt werden k{\"o}nnen.},
  language  = {de}
}
@phdthesis{Feige2009,
  author    = {Feige, Katharina},
  title     = {Molecular ecological analysis of methanogenic communities in terrestrial and submarine permafrost deposits of Siberian Laptev Sea area},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-37998},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Despite general concern that the massive deposits of methane stored under permafrost underground and undersea could be released into the atmosphere due to rising temperatures attributed to global climate change, little is known about the methanogenic microorganisms in permafrost sediments, their role in methane emissions, and their phylogeny. The aim of this thesis was to increase knowledge of uncultivated methanogenic microorganisms in submarine and terrestrial permafrost deposits, their community composition, the role they play with regard to methane emissions, and their phylogeny. It is assumed that methanogenic communities in warmer submarine permafrost may serve as a model to anticipate the response of methanogenic communities in colder terrestrial permafrost to rising temperatures. The compositions of methanogenic communities were examined in terrestrial and submarine permafrost sediment samples. The submarine permafrost studied in this research was 10°C warmer than the terrestrial permafrost. By polymerase chain reaction (PCR), DNA was extracted from each of the samples and analyzed by molecular microbiological methods such as PCR-DGGE, RT-PCR, and cloning. Furthermore, these samples were used for in vitro experiment and FISH. The submarine permafrost analysis of the isotope composition of CH4 suggested a relationship between methane content and in situ active methanogenesis. Furthermore, active methanogenesis was proven using 13C-isotope measurements of methane in submarine permafrost sediment with a high TOC value and a high methane concentration. In the molecular-microbiological studies uncultivated lines of Methanosarcina, Methanomicrobiales, Methanobacteriacea and the Groups 1.3 and Marine Benthic from Crenarchaeota were found in all submarine and terrestrial permafrost samples. Methanosarcina was the dominant group of the Archaea in all submarine and terrestrial permafrost samples. The archaeal community composition, in particular, the methanogenic community composition showed diversity with changes in temperatures. Furthermore, cell count of methanogens in submarine permafrost was 10 times higher than in terrestrial permafrost. In vitro experiments showed that methanogens adapt quickly and well to higher temperatures. If temperatures rise due to climate change, an increase in methanogenic activity can be expected as long as organic material is sufficiently available and qualitatively adequate.},
  language  = {en}
}
@phdthesis{Krebs2009,
  author    = {Krebs, Jonas},
  title     = {Molecular and physiological characterisation of selected DOF transcription factors in the model plant Arabidopsis thaliana},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-41831},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {About 2,000 of the more than 27,000 genes of the genetic model plant Arabidopsis thaliana encode for transcription factors (TFs), proteins that bind DNA in the promoter region of their target genes and thus act as transcriptional activators and repressors. Since TFs play essential roles in nearly all biological processes, they are of great scientific and biotechnological interest. This thesis concentrated on the functional characterisation of four selected members of the Arabidopsis DOF-family, namely DOF1.2, DOF3.1, DOF3.5 and DOF5.2, which were selected because of their specific expression pattern in the root tip, a region that comprises the stem cell niche and cells for the perception of environmental stimuli. DOF1.2, DOF3.1 and DOF3.5 are previously uncharacterized members of the Arabidopsis DOF-family, while DOF5.2 has been shown to be involved in the phototrophic flowering response. However, its role in root development has not been described so far. To identify biological processes regulated by the four DOF proteins in detail, molecular and physiological characterization of transgenic plants with modified levels of DOF1.2, DOF3.1, DOF3.5 and DOF5.2 expression (constitutive and inducible over-expression, artificial microRNA) was performed. Additionally expression patterns of the TFs and their target genes were analyzed using promoter-GUS lines and publicly available microarray data. Finally putative protein-protein interaction partners and upstream regulating TFs were identified using the yeast two-hybrid and one-hybrid system. This combinatorial approach revealed distinct biological functions of DOF1.2, DOF3.1, DOF3.5 and DOF5.2 in the context of root development. DOF1.2 and DOF3.5 are specifically and exclusively expressed in the root cap, including the central root cap (columella) and the lateral root cap, organs which are essential to direct oriented root growth. It could be demonstrated that both genes work in the plant hormone auxin signaling pathway and have an impact on distal cell differentiation. Altered levels of gene expression lead to changes in auxin distribution, abnormal cell division patterns and altered root growth orientation. DOF3.1 and DOF5.2 share a specific expression pattern in the organizing centre of the root stem cell niche, called the quiescent centre. Both genes redundantly control cell differentiation in the root´s proximal meristem and unravel a novel transcriptional regulation pathway for genes enriched in the QC cells. Furthermore this work revealed a novel bipartite nuclear localisation signal being present in the protein sequence of the DOF TF family from all sequenced plant species. Summing up, this work provides an important input into our knowledge about the role of DOF TFs during root development. Future work will concentrate on revealing the exact regulatory networks of DOF1.2, DOF3.1, DOF3.5 and DOF5.2 and their possible biotechnological applications.},
  language  = {en}
}
@phdthesis{Hahn2009,
  author    = {Hahn, Harald},
  title     = {Modularer Ansatz zu multifunktionellen Polymer-Peptid-Fasern},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-33016},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Die Kombination von Polymeren mit Peptiden vereint die Eigenschaften beider Stoffklassen miteinander. Dabei k{\"o}nnen die strukturbildenden Eigenschaften der Peptide genutzt werden, um Polymere zu organisieren. In der vorliegenden Arbeit wurde ein Polymer-Peptid-Konjugat verwendet, das sich in Wasser zu B{\"a}ndern anordnet. Die treibende Kraft f{\"u}r diesen Prozess ist die Anordnung des Peptidteils zu β-Faltblattstrukturen. Das Polymer-Peptid-Aggregat besitzt einen Peptidkern mit funktionalen Oberfl{\"a}chen, der lateral von einer Polyethylenoxidschale umgeben ist. Durch {\"A}nderung der Peptidsequenz war es bisher m{\"o}glich, die Eigenschaften dieser Fasern zu variieren. In der Arbeit wird ein modularer Ansatz zur vielf{\"a}ltigen Modifizierung einer Polymer-Peptid-Faser entwickelt. So ist es m{\"o}glich, die Eigenschaften der Fasern einzustellen, ohne die strukturbildende β-Faltblattsequenz ver{\"a}ndern zu m{\"u}ssen. Um weitere Funktionen an den Fasern anzubringen, wurde die 1,3-dipolaren Addition verwendet. Diese Reaktion beschreibt die konzertierte Umlagerung eines Azides mit einem Alkin. Sie ist in den meisten L{\"o}sungsmitteln unter hohen Ausbeuten durchf{\"u}hrbar. Im Rahmen der Arbeit wird die Erzeugung von Aziden untersucht und auf die Polymer-Peptid-Fasern {\"u}bertragen. Der Diazotransfer stellte dabei die Methode der Wahl dar, so k{\"o}nnen Azidgruppen aus Aminen gewonnen werden. Unter Verwendung der 1,3-dipolaren Addition konnten verschiedene alkinfunktionale Molek{\"u}le kovalent an die azidfunktionalisierten Polymer-Peptid-Fasern gebunden werden. So wurde ein Fluoreszenzfarbstoff an die Fasern gebunden, der eine Abbildung der Fasern mittels konfokaler Mikroskopie erlaubte. Weiterhin wurden die Eigenschaften der Fasern durch Addition dreier carboxylfunktionaler Molek{\"u}le modifiziert. Diese Fasern konnten weiter genutzt werden, um Kalzium zu binden. Dabei variierte die Anzahl der gebundenen Kalziumionen in Abh{\"a}ngigkeit der jeweiligen Fasermodifikation erheblich. Weitere Untersuchungen, die Morphologie von Kalziumcarbonatkristallen betreffend, werden aktuell durchgef{\"u}hrt. Die kovalente Anbringung eines reduzierenden Zuckers an die Polymer-Peptid-Fasern erlaubt die Abscheidung von Silber aus Tollens Reagenz. Durch eine Entwicklung analog zur Schwarz-Weiss-Photographie k{\"o}nnen in nachfolgenden Arbeiten so Silberdr{\"a}hte in Nanogr{\"o}ße erzeugt werden. An die azidfunktionalen Fasern k{\"o}nnen weitere funktionale Molek{\"u}le angebracht werden, um die Eigenschaften und das Anwendungsspektrum der Polymer-Peptid-Fasern zu erweitern.},
  language  = {de}
}
@phdthesis{Dreja2009,
  author    = {Dreja, Tanja S.},
  title     = {Microarray-basierte Expressionsanalysen des weißen Fettgewebes der NZO-Maus sowie der Langerhansschen Inseln der NZL-Maus : zwei Modelle f{\"u}r das metabolische Syndrom},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-32379},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {{\"U}bergewicht und Adipositas f{\"u}hren zu Insulinresistenz und erh{\"o}hen deutlich das Risiko f{\"u}r die Entwicklung von Typ-2-Diabetes und kardiovaskul{\"a}ren Erkrankungen. Sowohl Adipositas als auch die Suszeptibilit{\"a}t gegen{\"u}ber Diabetes sind zu einem erheblichen Teil genetisch determiniert. Die relevanten Risikogene, deren Interaktion mit der Umwelt, insbesondere mit Bestandteilen der Nahrung, und die Pathomechanismen, die zur Insulinresistenz und Diabetes f{\"u}hren, sind nicht vollst{\"a}ndig aufgekl{\"a}rt. In der vorliegenden Arbeit sollte durch Genexpressionsanalysen des weißen Fettgewebes (WAT) und der Langerhansschen Inseln die Entstehung und Progression von Adipositas und Typ-2-Diabetes untersucht werden, um relevante Pathomechanismen und neue Kandidatengene zu identifizieren. Zu diesem Zweck wurden Di{\"a}t-Interventionsstudien mit NZO- und verwandten NZL-M{\"a}usen, zwei polygenen Mausmodellen f{\"u}r das humane metabolische Syndrom, durchgef{\"u}hrt. Eine kohlenhydrathaltige Hochfett-Di{\"a}t (HF: 14,6 \% Fettanteil) f{\"u}hrte in beiden Mausmodellen zu fr{\"u}her Adipositas, Insulinresistenz und Typ 2 Diabetes. Eine fettreduzierte Standarddi{\"a}t (SD: 3,3 \% Fettanteil), welche die Entstehung von Adipositas und Diabetes stark verz{\"o}gert, sowie eine diabetesprotektive kohlenhydratfreie Hochfett-Di{\"a}t (CHF: 30,2 \% Fettanteil) dienten als Kontrolldi{\"a}ten. Mit Hilfe der Microarray-Technologie wurden genomweite Expressionsprofile des WAT erstellt. Pankreatische Inseln wurden durch laserbasierte Mikropr{\"a}paration (Laser Capture Microdissection; LCM) isoliert und ebenfalls hinsichtlich ihres Expressionsprofils analysiert. Differenziell exprimierte Gene wurden durch Real-Time-PCR validiert. Im WAT der NZO-Maus bewirkte die HF-Di{\"a}t eine reduzierte Expression nukle{\"a}rer Gene der oxidativen Phosphorylierung und von lipogenen Enzymen. Dies deutet auf eine inad{\"a}quate Fettspeicherung und -verwertung in diesen Tieren hin. Die Reduktion in der Fettspeicherung und -oxidation ist spezifisch f{\"u}r das adip{\"o}se NZO-Modell und konnte bei der schlanken SJL Maus nicht beobachtet werden, was auf eine m{\"o}gliche Beteiligung an der Entstehung der Insulinresistenz hinweist. Zus{\"a}tzlich wurde best{\"a}tigt, dass die Expansion des Fettgewebes bei der adip{\"o}sen NZO-Maus eine zeitlich verz{\"o}gerte Infiltration von Makrophagen in das WAT und dort eine lokale Immunantwort ausl{\"o}st. Dar{\"u}ber hinaus wurde die Methode der LCM etabliert und zur Gewinnung hochangereicherter RNA aus den Langerhansschen Inseln eingesetzt. In erstmalig durchgef{\"u}hrten genomweiten Expressionsanalysen wurde zu einem fr{\"u}hen Zeitpunkt in der Diabetesentwicklung der Einfluss einer diabetogenen HF-Di{\"a}t und einer diabetesprotektiven CHF-Di{\"a}t auf das Expressionsprofil von pankreatischen Inselzellen verglichen. Im Gegensatz zum WAT bewirkt die diabetogene HF-Di{\"a}t in Inselzellen einerseits, eine erh{\"o}hte Expression von nukle{\"a}ren Genen f{\"u}r die oxidative Phosphorylierung und andererseits von Genen, die mit Zellproliferation assoziiert sind. Zudem wurden 37 bereits annotierte Gene identifiziert, deren differenzielle Expression mit der Diabetesentwicklung korreliert. Das Peptidhormon Cholecystokinin (Cck, 11,8-fach erh{\"o}ht durch die HF) stellt eines der am st{\"a}rksten herauf regulierten Gene dar. Die hohe Anreicherung der Cck-mRNA in Inselzellen deutet auf eine bisher unbekannte Funktion des Hormons in der Regulation der Inselzellproliferation hin. Der Transkriptionsfaktor Mlxipl (ChREBP; 3,8-fach erniedrigt durch die HF) stellt in Langerhansschen Inseln eines der am st{\"a}rksten herunter regulierten Gene dar. Ferner wurde ChREBP, dessen Funktion als glucoseregulierter Transkriptionsfaktor f{\"u}r lipogene Enzyme bislang in der Leber, aber nicht in Inselzellen nachgewiesen werden konnte, erstmals immunhistochemisch in Inselzellen detektiert. Dies deutet auf eine neue, bisher unbekannte regulatorische Funktion von ChREBP im Glucosesensor-Mechanismus der Inselzellen hin. Eine durchgef{\"u}hrte Korrelation der mit der Diabetesentwicklung assoziierten, differenziell exprimierten Inselzellgene mit Genvarianten aus humanen genomweiten Assoziationsstudien f{\"u}r Typ-2-Diabetes (WTCCC, Broad-DGI-T2D-Studie) erm{\"o}glichte die Identifizierung von 24 neuartigen Diabetes-Kandidatengenen. Die Ergebnisse der erstmals am polygenen NZO-Mausmodell durchgef{\"u}hrten genomweiten Expressionsuntersuchungen best{\"a}tigen bisherige Befunde aus Mausmodellen f{\"u}r Adipositas und Diabetes (z.B. ob/ob- und db/db-M{\"a}use), zeigen in einigen F{\"a}llen aber auch Unterschiede auf. Insbesondere in der oxidativen Phosphorylierung k{\"o}nnten die Ergebnisse relevant sein f{\"u}r das Verst{\"a}ndnis der Pathogenese des polygen-bedingten humanen metabolischen Syndroms.},
  language  = {de}
}
@phdthesis{Francke2009,
  author    = {Francke, Till},
  title     = {Measurement and modelling of water and sediment fluxes in meso-scale dryland catchments},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-31525},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Water shortage is a serious threat for many societies worldwide. In drylands, water management measures like the construction of reservoirs are affected by eroded sediments transported in the rivers. Thus, the capability of assessing water and sediment fluxes at the river basin scale is of vital importance to support management decisions and policy making. This subject was addressed by the DFG-funded SESAM-project (Sediment Export from large Semi-Arid catchments: Measurements and Modelling). As a part of this project, this thesis focuses on (1) the development and implementation of an erosion module for a meso-scale catchment model, (2) the development of upscaling and generalization methods for the parameterization of such model, (3) the execution of measurements to obtain data required for the modelling and (4) the application of the model to different study areas and its evaluation. The research was carried out in two meso-scale dryland catchments in NE-Spain: Ribera Salada (200 km²) and Is{\´a}bena (450 km²). Adressing objective 1, WASA-SED, a spatially semi-distributed model for water and sediment transport at the meso-scale was developed. The model simulates runoff and erosion processes at the hillslope scale, transport processes of suspended and bedload fluxes in the river reaches, and retention and remobilisation processes of sediments in reservoirs. This thesis introduces the model concept, presents current model applications and discusses its capabilities and limitations. Modelling at larger scales faces the dilemma of describing relevant processes while maintaining a manageable demand for input data and computation time. WASA-SED addresses this challenge by employing an innovative catena-based upscaling approach: the landscape is represented by characteristic toposequences. For deriving these toposequences with regard to multiple attributes (eg. topography, soils, vegetation) the LUMP-algorithm (Landscape Unit Mapping Program) was developed and related to objective 2. It incorporates an algorithm to retrieve representative catenas and their attributes, based on a Digital Elevation Model and supplemental spatial data. These catenas are classified to provide the discretization for the WASA-SED model. For objective 3, water and sediment fluxes were monitored at the catchment outlet of the Is{\´a}bena and some of its sub-catchments. For sediment yield estimation, the intermittent measurements of suspended sediment concentration (SSC) had to be interpolated. This thesis presents a comparison of traditional sediment rating curves (SRCs), generalized linear models (GLMs) and non-parametric regression using Random Forests (RF) and Quantile Regression Forests (QRF). The observed SSCs are highly variable and range over six orders of magnitude. For these data, traditional SRCs performed poorly, as did GLMs, despite including other relevant process variables (e.g. rainfall intensities, discharge characteristics). RF and QRF proved to be very robust and performed favourably for reproducing sediment dynamics. QRF additionally excels in providing estimates on the accuracy of the predictions. Subsequent analysis showed that most of the sediment was exported during intense storms of late summer. Later floods yielded successively less sediment. Comparing sediment generation to yield at the outlet suggested considerable storage effects within the river channel. Addressing objective 4, the WASA-SED model was parameterized for the two study areas in NE Spain and applied with different foci. For Ribera Salada, the uncalibrated model yielded reasonable results for runoff and sediment. It provided quantitative measures of the change in runoff and sediment yield for different land-uses. Additional land management scenarios were presented and compared to impacts caused by climate change projections. In contrast, the application for the Is{\´a}bena focussed on exploring the full potential of the model's predictive capabilities. The calibrated model achieved an acceptable performance for the validation period in terms of water and sediment fluxes. The inadequate representation of the lower sub-catchments inflicted considerable reductions on model performance, while results for the headwater catchments showed good agreement despite stark contrasts in sediment yield. In summary, the application of WASA-SED to three catchments proved the model framework to be a practicable multi-scale approach. It successfully links the hillslope to the catchment scale and integrates the three components hillslope, river and reservoir in one model. Thus, it provides a feasible approach for tackling issues of water and sediment yield at the meso-scale. The crucial role of processes like transmission losses and sediment storage in the river has been identified. Further advances can be expected when the representation of connectivity of water and sediment fluxes (intra-hillslope, hillslope-river, intra-river) is refined and input data improves.},
  language  = {en}
}
@phdthesis{Liermann2009,
  author    = {Liermann, Adriane},
  title     = {Massive stars in the Galactic Center Quintuplet cluster},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-37223},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {The presented thesis describes the observations of the Galactic center Quintuplet cluster, the spectral analysis of the cluster Wolf-Rayet stars of the nitrogen sequence to determine their fundamental stellar parameters, and discusses the obtained results in a general context. The Quintuplet cluster was discovered in one of the first infrared surveys of the Galactic center region (Okuda et al. 1987, 1989) and was observed for this project with the ESO-VLT near-infrared integral field instrument SINFONI-SPIFFI. The subsequent data reduction was performed in parts with a self-written pipeline to obtain flux-calibrated spectra of all objects detected in the imaged field of view. First results of the observation were compiled and published in a spectral catalog of 160 flux-calibrated \$K\$-band spectra in the range of 1.95 to 2.45\,\$\mu\$m, containing 85 early-type (OB) stars, 62 late-type (KM) stars, and 13 Wolf-Rayet stars. About 100 of these stars are cataloged for the first time. The main part of the thesis project was concentrated on the analysis of the WR stars of the nitrogen sequence and one further identified emission line star (Of/WN) with tailored Potsdam Wolf-Rayet (PoWR) models for expanding atmospheres (Hamann et al. 1995) that are applied to derive the stellar parameters of these stars. For this purpose, the atomic input data of the PoWR models had to be extended by further line transitions in the near-infrared spectral range to enable adaequate model spectra to be calculated. These models were then fitted to the observed spectra, revealing typical paramters for this class of stars. A significant amount of hydrogen of up to \$X_\text{H} \sim 0.2\$ by mass fraction is still present in their stellar atmospheres. The stars are also found to be very luminous (\$\log{(L/L_\odot)} > 6.0\$) and show mass-loss rates and wind characteristics typical for radiation-driven winds. By comparison with stellar evolutionary models (Meynet \\& Maeder 2003a; Langer et al. 1994), the initial masses were estimated and indicate that the Quintuplet WN stars are descendants from the most massive O stars with \$M_\text{init} > 60 M_\odot\$ and their ages correspond to a cluster age of 3-5\,million years. The analysis of the individual WN stars revealed an average extinction of \$A_K =3.1 \pm 0.5\$\,mag (\$A_V = 27 \pm 4\$) towards the Quintuplet cluster. This extinction was applied to derive the stellar luminosities of the remaining early-type and late-type stars in the catalog and a Hertzsprung-Russell diagram could be compiled. Surprisingly, two stellar populations are found, a group of main sequence OB stars and a group of evolved late-type stars, i.e. red supergiants (RSG). The main sequence stars indicate a cluster age of 4 million years, which would be too young for red supergiants to be already present. A star formation event lasting for a few million years might possibly explain the Quintuplet's population and the cluster would still be considered coeval. However, the unexpected and simultaneous presence of red supergiants and Wolf-Rayet stars in the cluster points out that the details of star formation and cluster evolution are not yet well understood for the Quintuplet cluster.},
  language  = {en}
}
@phdthesis{ZamoraLopez2009,
  author    = {Zamora-L{\´o}pez, Gorka},
  title     = {Linking structure and function of complex cortical networks},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-52257},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {The recent discovery of an intricate and nontrivial interaction topology among the elements of a wide range of natural systems has altered the manner we understand complexity. For example, the axonal fibres transmitting electrical information between cortical regions form a network which is neither regular nor completely random. Their structure seems to follow functional principles to balance between segregation (functional specialisation) and integration. Cortical regions are clustered into modules specialised in processing different kinds of information, e.g. visual or auditory. However, in order to generate a global perception of the real world, the brain needs to integrate the distinct types of information. Where this integration happens, nobody knows. We have performed an extensive and detailed graph theoretical analysis of the cortico-cortical organisation in the brain of cats, trying to relate the individual and collective topological properties of the cortical areas to their function. We conclude that the cortex possesses a very rich communication structure, composed of a mixture of parallel and serial processing paths capable of accommodating dynamical processes with a wide variety of time scales. The communication paths between the sensory systems are not random, but largely mediated by a small set of areas. Far from acting as mere transmitters of information, these central areas are densely connected to each other, strongly indicating their functional role as integrators of the multisensory information. In the quest of uncovering the structure-function relationship of cortical networks, the peculiarities of this network have led us to continuously reconsider the stablished graph measures. For example, a normalised formalism to identify the "functional roles" of vertices in networks with community structure is proposed. The tools developed for this purpose open the door to novel community detection techniques which may also characterise the overlap between modules. The concept of integration has been revisited and adapted to the necessities of the network under study. Additionally, analytical and numerical methods have been introduced to facilitate understanding of the complicated statistical interrelations between the distinct network measures. These methods are helpful to construct new significance tests which may help to discriminate the relevant properties of real networks from side-effects of the evolutionary-growth processes.},
  language  = {en}
}
@phdthesis{Stefer2009,
  author    = {Stefer, Susanne},
  title     = {Late Pleistocene-Holocene sedimentary processes at the active margin of South-Central Chile : marine and lacustrine sediment records as archives of tectonics and climate variability},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-33731},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Active continental margins are affected by complex feedbacks between tectonic, climate and surface processes, the intricate relations of which are still a matter of discussion. The Chilean convergent margin, forming the outstanding Andean subduction orogen, constitutes an ideal natural laboratory for the investigation of climate, tectonics and their interactions. In order to study both processes, I examined marine and lacustrine sediments from different depositional environments on- and offshore the south-central Chilean coast (38-40°S). I combined sedimentological, geochemical and isotopical analyses to identify climatic and tectonic signals within the sedimentary records. The investigation of marine trench sediments (ODP Site 1232, SONNE core 50SL) focused on frequency changes of turbiditic event layers since the late Pleistocene. In the active margin setting of south-central Chile, these layers were considered to reflect periodically occurring earthquakes and to constitute an archive of the regional paleoseismicity. The new results indicate glacial-interglacial changes in turbidite frequencies during the last 140 kyr, with short recurrence times (~200 years) during glacial and long recurrence times (~1000 years) during interglacial periods. Hence, the generation of turbidites appears to be strongly influenced by climate and sea level changes, which control on the amount of sediment delivered to the shelf edge and therewith the stability of the continental slope: more stable slope conditions during interglacial periods entail lower turbidite frequencies than in glacial periods. Since glacial turbidite recurrence times are congruent with earthquake recurrence times derived from the historical record and other paleoseismic archives of the region, I concluded that only during cold stages the sediment availability and slope instability enabled the complete series of large earthquakes to be recorded. The sediment transport to the shelf region is not only driven by climate conditions but also influenced by local forearc tectonics. Accelerating uplift rates along major tectonic structures involved drainage anomalies and river flow inversions, which seriously altered the sediment supply to the Pacific Ocean. Two examples for the tectonic hindrance of fluvial systems are the coastal lakes Lago Lanalhue and Lago Lleu Lleu. Both lakes developed within former river valleys, which once discharged towards the Pacific and were dammed by tectonically uplifted sills at ~8000 yr BP. Analyses of sediment cores from the lakes showed similar successions of marine/brackish deposits at the bottom, covered by lacustrine sediments on top. Dating of the transitions between these different units and the comparison with global sea level curves allowed me to calculate local Holocene uplift rates, which are distinctly higher for the upraised sills (Lanalhue: 8.83 ± 2.7 mm/yr, Lleu Lleu: 11.36 ± 1.77 mm/yr) than for the lake basins (Lanalhue: 0.42 ± 0.71 mm/yr, Lleu Lleu: 0.49 ± 0.44 mm/yr). I hence considered the sills to be the surface expression of a blind thrust associated with a prominent inverse fault that is controlling regional uplift and folding. After the final separation of Lago Lanalhue and Lago Lleu Lleu from the Pacific, a constant deposition of lacustrine sediments preserved continuous records of local environmental changes. Sequences from both lakes indicate a long-term climate trend with a significant shift from more arid conditions during the Mid-Holocene (8000 - 4200 cal yr BP) to more humid conditions during the Late Holocene (4200 cal yr BP - present). This trend is consistent with other regional paleoclimatic data and interpreted to reflect changes in the strength/position of the Southern Westerly Winds. Since ~5000 years, sediments of Lago Lleu Lleu are marked by numerous intercalated detrital layers that recur with a mean frequency of ~210 years. Deposition of these layers may be triggered by local tectonics (i.e. earthquakes), but may also originate from changes in the local climate (e.g. onset of modern ENSO conditions). During the last 2000 years, pronounced variations in the terrigenous sediment supply to both lakes suggest important hydrological changes on the centennial time-scale as well. A lower input of terrigenous matter points to less humid phases between 200 cal yr B.C. - 150 cal yr A.D., 900 - 1350 cal yr A.D. and 1850 cal yr A.D. to present (broadly corresponding to the Roman, Medieval, and Modern Warm Periods). More humid periods persisted from 150 - 900 cal yr A.D. and 1350 - 1850 cal yr A.D. (broadly corresponding to the Dark Ages and the Little Ice Age). In conclusion, the combined investigation of marine and lacustrine sediments is a feasible method for the reconstruction of climatic and tectonic processes on different time scales. My approach allows exploring both climate and tectonics in one and the same archive, and is largely transferable to other active margins worldwide.},
  language  = {en}
}
@phdthesis{Brune2009,
  author    = {Brune, Sascha},
  title     = {Landslide generated tsunamis : numerical modeling and real-time prediction},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-32986},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Submarine landslides can generate local tsunamis posing a hazard to human lives and coastal facilities. Two major related problems are: (i) quantitative estimation of tsunami hazard and (ii) early detection of the most dangerous landslides. This thesis focuses on both those issues by providing numerical modeling of landslide-induced tsunamis and by suggesting and justifying a new method for fast detection of tsunamigenic landslides by means of tiltmeters. Due to the proximity to the Sunda subduction zone, Indonesian coasts are prone to earthquake, but also landslide tsunamis. The aim of the GITEWS-project (German-Indonesian Tsunami Early Warning System) is to provide fast and reliable tsunami warnings, but also to deepen the knowledge about tsunami hazards. New bathymetric data at the Sunda Arc provide the opportunity to evaluate the hazard potential of landslide tsunamis for the adjacent Indonesian islands. I present nine large mass movements in proximity to Sumatra, Java, Sumbawa and Sumba, whereof the largest event displaced 20 km³ of sediments. Using numerical modeling, I compute the generated tsunami of each event, its propagation and runup at the coast. Moreover, I investigate the age of the largest slope failures by relating them to the Great 1977 Sumba earthquake. Continental slopes off northwest Europe are well known for their history of huge underwater landslides. The current geological situation west of Spitsbergen is comparable to the continental margin off Norway after the last glaciation, when the large tsunamigenic Storegga slide took place. The influence of Arctic warming on the stability of the Svalbard glacial margin is discussed. Based on new geophysical data, I present four possible landslide scenarios and compute the generated tsunamis. Waves of 6 m height would be capable of reaching northwest Europe threatening coastal areas. I present a novel technique to detect large submarine landslides using an array of tiltmeters, as a possible tool in future tsunami early warning systems. The dislocation of a large amount of sediment during a landslide produces a permanent elastic response of the earth. I analyze this response with a mathematical model and calculate the theoretical tilt signal. Applications to the hypothetical Spitsbergen event and the historical Storegga slide show tilt signals exceeding 1000 nrad. The amplitude of landslide tsunamis is controlled by the product of slide volume and maximal velocity (slide tsunamigenic potential). I introduce an inversion routine that provides slide location and tsunamigenic potential, based on tiltmeter measurements. The accuracy of the inversion and of the estimated tsunami height near the coast depends on the noise level of tiltmeter measurements, the distance of tiltmeters from the slide, and the slide tsunamigenic potential. Finally, I estimate the applicability scope of this method by employing it to known landslide events worldwide.},
  language  = {en}
}
@phdthesis{Wend2009,
  author    = {Wend, Korinna},
  title     = {Konstruktion und toxikologische Nutzung von transgenen M{\"a}usen mit den allelischen Varianten von humanen SULT1A-Genen},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-42052},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Eine besondere Rolle im Fremdstoffmetabolismus hat die SULT1A1 beim Menschen aufgrund der hohen Expression und breiten Gewebeverteilung. W{\"a}hrend die humane SULT1A1 in sehr vielen Geweben exprimiert wird, wurde die murine SULT1A1 vor allem in der Leber, Lunge und Colon gefunden. Neben der Gewebeverteilung spielt auch der Polymorphismus im humanen SULT1A1-Gen eine bedeutende Rolle. Der h{\"a}ufigste Polymorphismus in diesem Gen f{\"u}hrt zu einer Aminos{\"a}uresubstitution von Arginin zu Histidin an Position 213. Die Genvariante mit Histidin (auch als SULT1A1*2 bezeichnet) codiert f{\"u}r ein Protein mit einer geringen Enzymaktivit{\"a}t und einer reduzierten Enzymmenge in Thrombocyten. {\"U}ber den Einfluss dieser allelischen Varianten in anderen Geweben ist bislang wenig bekannt. In vorausgegangenen epidemiologischen Studien wurden m{\"o}gliche Korrelationen zwischen den Genvarianten und der Krebsentstehung in verschiedenen Geweben untersucht. Diese Daten liefern jedoch widerspr{\"u}chliche Ergebnisse zum Krebsrisiko. Aufgrund der strittigen epidemiologischen Daten sollten Tiermodelle generiert werden, um die h{\"a}ufigsten SULT1A1-Allele hinsichtlich der Empfindlichkeit gegen{\"u}ber Nahrungs- und Umweltkanzerogenen zu untersuchen. Zur Erzeugung transgener (tg) Mauslinien wurde mittels Mikroinjektion der codierenden Genbereich und große flankierende Humansequenzen stromaufw{\"a}rts und stromabw{\"a}rts in das Mausgenom integriert. Es wurden mehrere Mauslinien hergestellt. Zwei davon, die Mauslinie 31 mit dem SULT1A1*1-Allel und die Mauslinie 28 mit dem SULT1A1*2-Allel, wurden eingehend analysiert. In beiden Linien wurde eine identische Kopienzahl des Transgens ermittelt. Proteinbiochemische Charakterisierungen zeigten eine weitgehend dem Menschen entsprechende Gewebeverteilung und zellul{\"a}re und subzellul{\"a}re Lokalisation der humanen SULT1A1 in der Linie (Li) 28. In Li 31 wurden Unterschiede zu Li 28 sowohl in der Gewebeverteilung als auch in der zellul{\"a}ren Lokalisation des exprimierten humanen Proteins ermittelt. Dabei war die Expression auf Proteinebene in der SULT1A1*2-tg Linie generell st{\"a}rker als in der SULT1A1*1-Linie. Dieses Ergebnis war {\"u}berraschend, denn in humanen Thrombocyten f{\"u}hrt das SULT1A1*1-Allel zu einem h{\"o}heren Gehalt an SULT1A1-Protein als das SULT1A1*2-Allel. Zur Analyse der unterschiedlichen Proteinexpressionen in den tg Mauslinien wurde die cDNA und der 5´-flankierende Bereich des SULT1A1-Gens sequenziert. In beiden tg Linien entsprach die Sequenz der cDNA der Referenzsequenz aus der Gendatenbank (Pubmed). In der 5´-flankierenden Region wurden bekannte Polymorphismen analysiert und unterschiedliche Haplotypen in den tg Linien an den Positionen -624 und -396 ermittelt. Dabei wurde in der Li 31 der Haplotyp detektiert, der in der Literatur mit einer h{\"o}heren SULT1A1-Enzymaktivit{\"a}t beschrieben wird. Der m{\"o}gliche Zusammenhang zwischen Transkriptionsrate und Proteinexpression wurde in RNA-Expressionsanalysen im codierenden und 5´-nicht codierenden Bereich (mit den alternativen Exons 1B und 1A) untersucht. Im codierenden Bereich und im Exon 1B konnte in den untersuchten Organen eine h{\"o}here RNA-Expression in der Li 28 im Vergleich zur Li 31 ermittelt werden. Außer in der Lunge wurde f{\"u}r Exon 1B eine identische RNA-Expression detektiert. RNA, die Exon 1A enthielt, wurde in allen untersuchten Organen der Li 28, aber nur in der Lunge bei der Li 31 gefunden. In beiden tg Linien konnten mit den Exon 1A-Primern jedoch auch gr{\"o}ßere PCR-Produkte ermittelt werden. Dieser Unterschied im Exon 1A und m{\"o}gliche Spleißvarianten k{\"o}nnten damit f{\"u}r die unterschiedliche Proteinexpression des humanen SULT1A1-Proteins in den beiden tg Mauslinien sein. Die in dieser Arbeit generierten und charakterisierten tg Mausmodelle wurden in einer toxikologischen Studie eingesetzt. Es wurde das heterozyklische aromatische Amin 2-Amino-1-methyl-6-phenylimidazo-[4,5-b]pyridin (PhIP) verwendet. PhIP wird beim Erhitzen und Braten von Fleisch und Fisch gebildet und k{\"o}nnte mit der erh{\"o}hten Krebsentstehung im Colon in der westlichen Welt im Zusammenhang stehen. Mittels 32P-Postlabelling sollte der Einfluss der zus{\"a}tzlichen Expression der humanen SULT-Proteine auf die PhIP-DNA-Adduktbildung analysiert werden. Dabei wurden mehr DNA-Addukte in den tg Tieren als in den Wildtyp-M{\"a}usen ermittelt. Die Konzentration der gebildeten DNA-Addukte korrelierte mit der Expressionsst{\"a}rke des humanen SULT1A1-Proteins in den tg M{\"a}usen. An den in dieser Arbeit generierten tg Mauslinien mit den h{\"a}ufigsten allelischen Varianten des SULT1A1-Gens konnten Unterschiede auf RNA- und Protein-Ebene ermittelt werden. Zudem konnte gezeigt werden, dass die Expression der humanen SULT1A1 eine Auswirkung sowohl auf die St{\"a}rke als auch das Zielgewebe der DNA-Adduktbildung in vivo hat.},
  language  = {de}
}
@phdthesis{Troppmann2009,
  author    = {Troppmann, Britta},
  title     = {Klonierung und Charakterisierung aminerger Rezeptoren der Amerikanischen Schabe Periplaneta americana},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-36619},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Biogene Amine sind kleine organische Verbindungen, die sowohl bei Vertebraten als auch bei Invertebraten als Neurotransmitter, Neuromodulatoren und/oder Neurohormone wirken. Sie bilden eine bedeutende Gruppe von Botenstoffen und entfalten ihre Wirkungen vornehmlich {\"u}ber die Bindung an G-Protein-gekoppelte Rezeptoren. Bei Insekten wurde eine Vielzahl von Wirkungen biogener Amine beschrieben. Das f{\"u}hrte schon fr{\"u}hzeitig zur Vermutung, dass Insekten (u. a. Invertebraten) wie die Wirbeltiere ein diverses Repertoire an aminergen Rezeptoren besitzen. F{\"u}r ein umfassendes Verst{\"a}ndnis der komplexen physiologischen Wirkungen biogener Amine fehlten jedoch wichtige Informationen {\"u}ber die molekulare Identit{\"a}t der entsprechenden Rezeptorproteine und ihrer pharmakologischen Eigenschaften, ihre Lokalisation und ihre intrazellul{\"a}ren Reaktionspartner. Viele bei Schaben gut untersuchte (neuro)physiologische Prozesse sowie Verhaltensweisen werden durch Serotonin und Dopamin gesteuert bzw. moduliert. {\"U}ber die beteiligten Rezeptoren ist jedoch bisher vergleichsweise wenig bekannt. Die Klonierung und Charakterisierung von Serotonin- und Dopaminrezeptoren der Amerikanischen Schabe P. americana ist damit ein l{\"a}ngst {\"u}berf{\"a}lliger Schritt auf dem Weg zu einem umfassenden Verst{\"a}ndnis der vielf{\"a}ltigen Wirkungen biogener Amine bei Insekten. Durch die Anwendung verschiedener Klonierungsstrategien konnten cDNAs isoliert werden, die f{\"u}r potentielle Serotoninrezeptoren und einen Dopaminrezeptor kodieren. Die Sequenzen weisen die gr{\"o}ßte {\"A}hnlichkeit zu Mitgliedern der 5-HT1- und 5-HT7-Rezeptorklassen bzw. den Invertebratentyp-Dopaminrezeptoren auf. Die isolierten Rezeptoren der Amerikanischen Schabe wurden dementsprechend Pea(Periplaneta americana)5-HT1, Pea5-HT7 und PeaDop2 benannt. Das Hydropathieprofil dieser Rezeptoren postuliert das Vorhandensein der charakteristischen heptahelikalen Architektur G-Protein-gekoppelter Rezeptoren. Die abgeleiteten Aminos{\"a}uresequenzen zeigen typische Merkmale aminerger Rezeptoren. So sind Aminos{\"a}uren, die bedeutend f{\"u}r die Ligandenbindung, die Rezeptoraktivierung und die Kopplung an G﷓Proteine sind, in den Rezeptoren konserviert. Expressionsstudien zeigten eine auffallend hohe Expression aller drei Rezeptor-mRNAs im Gehirn sowie in den Speicheldr{\"u}sen. Im Rahmen dieser Arbeit wurden polyklonale Antik{\"o}rper gegen den Pea5-HT1-Rezeptor sowie den PeaDop2-Rezeptor hergestellt. Der anti-Pea5-HT1-Antik{\"o}rper detektiert im Homogenat von Schabengehirnen, Speicheldr{\"u}sen und Pea5-HT1-exprimierenden HEK 293-Zellen die glykosylierte Form des Rezeptors. In Gehirnschnitten markiert der anti-Pea5-HT1-Antik{\"o}rper spezifisch einige Zellk{\"o}rper in der Pars intercerebralis und deren Axone, welche in den Corpora cardiaca Nerv I projizieren. Der PeaDop2-Rezeptor wurde durch den spezifischen anti-PeaDop2-Antik{\"o}rper in Neuronen mit Somata im anterioren Randbereich der Medulla nachgewiesen. Diese Neurone innervieren die optischen Loben und projizieren in das ventrolaterale Protocerebrum. Die intrazellul{\"a}ren Signalwege der heterolog exprimierten Pea5-HT1- und PeaDop2-Rezeptoren wurden in HEK 293-Zellen untersucht. Die Aktivierung des Pea5-HT1-Rezeptors durch Serotonin f{\"u}hrt zur Hemmung der cAMP-Synthese. Des Weiteren wurde gezeigt, dass der Rezeptor konstitutive Aktivit{\"a}t besitzt. WAY 100635, ein hoch selektiver 5-HT1A-Rezeptorantagonist, wurde als wirksamer inverser Agonist am Pea5-HT1-Rezeptor identifiziert. Der stabil exprimierte PeaDop2-Rezeptor antwortet auf eine Aktivierung durch Dopamin mit einer Erh{\"o}hung der cAMP-Konzentration. Eine C-terminal trunkierte Variante dieses Rezeptors ist eigenst{\"a}ndig nicht funktional. Die Ergebnisse der vorliegenden Arbeit indizieren, dass die untersuchten aminergen Rezeptoren im zentralen Nervensystems der Schabe an der Informationsverarbeitung beteiligt sind und verschiedene physiologische Prozesse in peripheren Organen regulieren. Mit der Klonierung und funktionellen Charakterisierung der ersten Serotoninrezeptoren und eines Dopaminrezeptors ist damit eine wichtige Grundlage f{\"u}r die Untersuchung ihrer Funktionen geschaffen worden.},
  language  = {de}
}
@phdthesis{Kristen2009,
  author    = {Kristen, Iris},
  title     = {Investigations on rainfall variability during the late Quaternary based on geochemical analyses of lake sediments from tropical and subtropical southern Africa},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-32547},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {This thesis presents investigations on sediments from two African lakes which have been recording changes in their surrounding environmental and climate conditions since more than 200,000 years. Focus of this work is the time of the last Glacial and the Holocene (the last ~100,000 years before present [in the following 100 kyr BP]). One important precondition for this kind of research is a good understanding of the present ecosystems in and around the lakes and of the sediment formation under modern climate conditions. Both studies therefore include investigations on the modern environment (including organisms, soils, rocks, lake water and sediments). A 90 m long sediment sequence was investigated from Lake Tswaing (north-eastern South Africa) using geochemical analyses. These investigations document alternating periods of high detrital input and low (especially autochthonous) organic matter content and periods of low detrital input, carbonatic or evaporitic sedimentation and high autochthonous organic matter content. These alternations are interpreted as changes between relatively humid and arid conditions, respectively. Before c. 75 kyr BP, they seem to follow changes in local insolation whereas afterwards they appear to be acyclic and are probably caused by changes in ocean circulation and/or in the mean position of the Inter-Tropical Convergence Zone (ITCZ). Today, these factors have main influence on precipitation in this area where rainfall occurs almost exclusively during austral summer. All modern organisms were analysed for their biomarker and bulk organic and compound-specific stable carbon isotope composition. The same investigations on sediments from the modern lake floor document the mixed input of the investigated individual organisms and reveal additional influences by methanotrophic bacteria. A comparison of modern sediment characteristics with those of sediments covering the time 14 to 2 kyr BP shows changes in the productivity of the lake and the surrounding vegetation which are best explained by changes in hydrology. More humid conditions are indicated for times older than 10 kyr BP and younger than 7.5 kyr BP, whereas arid conditions prevailed in between. These observations agree with the results from sediment composition and indications from other climate archives nearby. The second lake study deals with Lake Challa, a small, deep crater lake on the foot of Mount Kilimanjaro. In this lake form mm-scale laminated sediments which were analyses with micro-XRF scanning for changes in the element composition. By comparing these results with investigations on thin sections, results from ongoing sediment trap studies, meteorological data, and investigations on the surrounding rocks and soils, I develop a model for seasonal variability in the limnology and sedimentation of Lake Challa. The lake appears to be stratified during the warm rain seasons (October - December and March - May) during which detrital material is delivered to the lake and carbonates precipitate. On the lake floor forms a dark lamina with high contents of Fe and Ti and high Ca/Al and low Mn/Fe ratios. Diatoms bloom during the cool and windy season (June - September) when mixing down to c. 60 m depth provides easily bio-available nutrients. Contemporaneously, Fe and Mn-oxides are precipitating which cause high Mn/Fe ratios in the light diatom-rich laminae of the sediments. Trends in the Mn/Fe ratio of the sediments are interpreted to reflect changes in the intensity or duration of seasonal mixing in Lake Challa. This interpretation is supported by parallel changes in the organic matter and biogenic silica content observed in the 22 m long profile recovered from Lake Challa. This covers the time of the last 25 kyr BP. It documents a transition around 16 kyr BP from relatively well-mixed conditions with high detrital input during glacial times to stronger stratified conditions which are probably related to increasing lake levels in Challa and generally more humid conditions in East Africa. Intensified mixing is recorded for the time of the Younger Dryas and the period between 11.4 and 10.7 kyr BP. For these periods, reduced intensity of the SW monsoon and intensified NE monsoon are reported from archives of the Indian-Asian Monsoon region, arguing for the latter as a probable source for wind mixing in Lake Challa. This connection is probably also responsible for contemporaneous events in the Mn/Fe ratios of the Lake Challa sediments and in other records of northern hemisphere monsoon intensity during the Holocene and underlines the close interaction of global low latitude atmospheric circulation.},
  language  = {en}
}
@phdthesis{Frey2009,
  author    = {Frey, Simone K.},
  title     = {Investigations on extra- and intracellular retinol-binding proteins},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-31428},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {The fat-soluble vitamin A, which is chemically referred to retinol (ROH), is known to be essential for the process of vision, the immune system but also for cell differentiation and proliferation. Recently, ROH itself has been reported to be involved in adipogenesis and a ROH transport protein, the retinol-binding protein 4 (RBP4), in insulin resistance and type 2 diabetes. However, there is still considerable scientific debate about this relation. With the increasing amount of studies investigating the relation of ROH in obesity and type 2 diabetes, basic research is an essential prerequisite for interpreting these results. This thesis enhances the knowledge on this relation by reviewing ROH metabolism on extra- and intracellular level. Aim 1: In the blood stream ROH is transported in a complex with RBP4 and a second protein, transthyretin (TTR), to the target cells. The levels of RBP4 and TTR are influenced by several factors but mainly by liver and kidney function. The reason for that is that liver and the kidneys are the sites of RBP4 synthesis and catabolism, respectively. Interestingly, obesity and type 2 diabetes involve disorders of the liver and the kidneys. Therefore the aim was to investigate factors that influence RBP4 and TTR levels in relation to obesity and type 2 diabetes (Part 1). Aim 2: Once arrived in the target cell ROH is bound to cellular retinol-binding protein type I (CRBP-I) and metabolised: ROH can either be stored as retinylesters or it can be oxidised to retinoic acid (RA). By acting as a transcription factor in the nucleus RA may influence processes such as adipogenesis. Therefore vitamin A has been postulated to be involved in obesity and type 2 diabetes. CRBP-I is known to mediate the storage of ROH in the liver, but the extra-hepatic metabolism and the functions of CRBP-I are not well known. This has been investigated in Part 2 of this work. Material \& Methods: RBP4 and TTR levels were investigated by ELISA in serum samples of human subjects with overweight, type 2 diabetes, kidney or liver dysfunction. Molecular alterations of the RBP4 and TTR protein structure were analysed by MALDI-TOF mass spectrometry. The functions of intracellular CRBP-I were investigated in CRBP-I knock-out mice in liver and extra-hepatic tissues by measuring ROH levels as well as the levels of its storage form, the retinylesters, using reverse phase HPLC. The postprandial uptake of ROH into tissues was analysed using labelled ROH. The mRNA levels of enzymes that metabolize ROH were examined by real-time polymerase chain reaction (RCR). Results: The previous published results showing increased RBP4 levels in type 2 diabetic patients could not be confirmed in this work. However, it could be shown that during kidney dysfunction RBP4 levels are increased and that RBP4 and TTR levels are decreased during liver dysfunction. The important new finding of this work is that increased RBP4 levels in type 2 diabetic mice were increased when kidney function was decreased. Thus an increase in RBP4 levels in type 2 diabetes may be the effect of a reduced kidney function which is common in type 2 diabetes. Interestingly, during severe kidney dysfunction the molecular structure of RBP4 and TTR was altered in a specific manner which was not the case during liver diseases and type 2 diabetes. This underlines the important function of the kidneys in RBP4 metabolism. CRBP-I has been confirmed to be responsible for the ROH storage in the liver since CRBP-I knock-out mice had decreased ROH and retinylesters (the storage form of ROH) levels in the liver. Interestingly, in the adipose tissue (the second largest ROH storage tissue in the body) ROH and retinylesters levels were higher in the CRBP-I knock-out compared to the wild-type mice. It could be shown in this work that a different ROH binding protein, cellular retinol-binding protein type III, is upregulated in CRBP-I knock-out mice. Moreover enzymes were identified which mediate very efficiently ROH esterification in the adipose tissue of the knock-out mice. In the pancreas there was a higher postprandial ROH uptake in the CRBP-I knock-out compard to wild-type mice. Even under a vitamin A deficient diet the knock-out animals had ROH and retinylesters levels which were comparable to wild-type animals. These results underline the important role of ROH for insulin secretion in the pancreas. Summing up, there is evidence that RBP4 levels are more determined by kidney function than by type 2 diabetes and that specific molecular modifications occur during kidney dysfunction. The results in adipose tissue and pancreas of CRBP-I knock-out mice support the hypothesis that ROH plays an important role in glucose and lipid metabolism.},
  language  = {en}
}
@phdthesis{Blacha2009,
  author    = {Blacha, Anna Maria},
  title     = {Investigating the role of regulatory genes in heterosis for superior growth and biomass production in Arabidopsis thaliana},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-46146},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {'Heterosis' is a term used in genetics and breeding referring to hybrid vigour or the superiority of hybrids over their parents in terms of traits such as size, growth rate, biomass, fertility, yield, nutrient content, disease resistance or tolerance to abiotic and abiotic stress. Parental plants which are two different inbred (pure) lines that have desired traits are crossed to obtain hybrids. Maximum heterosis is observed in the first generation (F1) of crosses. Heterosis has been utilised in plant and animal breeding programs for at least 90 years: by the end of the 21st century, 65\% of worldwide maize production was hybrid-based. Generally, it is believed that an understanding of the molecular basis of heterosis will allow the creation of new superior genotypes which could either be used directly as F1 hybrids or form the basis for the future breeding selection programmes. Two selected accessions of a research model plant Arabidopsis thaliana (thale cress) were crossed to obtain hybrids. These typically exhibited a 60-80\% increase of biomass when compared to the average weight of both parents. This PhD project focused on investigating the role of selected regulatory genes given their potentially key involvement in heterosis. In the first part of the project, the most appropriate developmental stage for this heterosis study was determined by metabolite level measurements and growth observations in parents and hybrids. At the selected stage, around 60 candidate regulatory genes (i.e. differentially expressed in hybrids when compared to parents) were identified. Of these, the majority were transcription factors, genes that coordinate the expression of other genes. Subsequent expression analyses of the candidate genes in biomass-heterotic hybrids of other Arabidopsis accessions revealed a differential expression in a gene subset, highlighting their relevance for heterosis. Moreover, a fraction of the candidate regulatory genes were found within DNA regions closely linked to the genes that underlie the biomass or growth heterosis. Additional analyses to validate the role of selected candidate regulatory genes in heterosis appeared insufficient to establish their role in heterosis. This uncovered a need for using novel approaches as discussed in the thesis. Taken together, the work provided an insight into studies on the molecular mechanisms underlying heterosis. Although studies on heterosis date back to more than one hundred years, this project as many others revealed that more investigations will be needed to uncover this phenomenon.},
  language  = {en}
}
@phdthesis{Todt2009,
  author    = {Todt, Helge Tobias},
  title     = {Hydrogen-deficient central stars of planetary nebulae},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-41047},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Central stars of planetary nebulae are low-mass stars on the brink of their final evolution towards white dwarfs. Because of their surface temperature of above 25,000 K their UV radiation ionizes the surrounding material, which was ejected in an earlier phase of their evolution. Such fluorescent circumstellar gas is called a "Planetary Nebula". About one-tenth of the Galactic central stars are hydrogen-deficient. Generally, the surface of these central stars is a mixture of helium, carbon, and oxygen resulting from partial helium burning. Moreover, most of them have a strong stellar wind, similar to massive Pop-I Wolf-Rayet stars, and are in analogy classified as [WC]. The brackets distinguish the special type from the massive WC stars. Qualitative spectral analyses of [WC] stars lead to the assumption of an evolutionary sequence from the cooler, so-called late-type [WCL] stars to the very hot, early-type [WCE] stars. Quantitative analyses of the winds of [WC] stars became possible by means of computer programs that solve the radiative transfer in the co-moving frame, together with the statistical equilibrium equations for the population numbers. First analyses employing models without iron-line blanketing resulted in systematically different abundances for [WCL] and [WCE] stars. While the mass ratio of He:C is roughly 40:50 for [WCL] stars, it is 60:30 in average for [WCE] stars. The postulated evolution from [WCL] to [WCE] however could only lead to an increase of carbon, since heavier elements are built up by nuclear fusion. In the present work, improved models are used to re-analyze the [WCE] stars and to confirm their He:C abundance ratio. Refined models, calculated with the Potsdam WR model atmosphere code (PoWR), account now for line-blanketing due to iron group elements, small scale wind inhomogeneities, and complex model atoms for He, C, O, H, P, N, and Ne. Referring to stellar evolutionary models for the hydrogen-deficient [WC] stars, Ne and N abundances are of particular interest. Only one out of three different evolutionary channels, the VLTP scenario, leads to a Ne and N overabundance of a few percent by mass. A VLTP, a very late thermal pulse, is a rapid increase of the energy production of the helium-burning shell, while hydrogen burning has already ceased. Subsequently, the hydrogen envelope is mixed with deeper layers and completely burnt in the presence of C, He, and O. This results in the formation of N and Ne. A sample of eleven [WCE] stars has been analyzed. For three of them, PB 6, NGC 5189, and [S71d]3, a N overabundance of 1.5\% has been found, while for three other [WCE] stars such high abundances of N can be excluded. In the case of NGC 5189, strong spectral lines of Ne can be reproduced qualitatively by our models. At present, the Ne mass fraction can only be roughly estimated from the Ne emission lines and seems to be in the order of a few percent by mass. Furthermore, using a diagnostic He-C line pair, the He:C abundance ratio of 60:30 for [WCE] stars is confirmed. Within the framework of the analysis, a new class of hydrogen-deficient central stars has been discovered, with PB 8 as its first member. Its atmospheric mixture resembles rather that of the massive WNL stars than of the [WC] stars. The determined mass fractions H:He:C:N:O are 40:55:1.3:2:1.3. As the wind of PB 8 contains significant amounts of O and C, in contrast to WN stars, a classification as [WN/WC] is suggested.},
  language  = {en}
}
@phdthesis{Rafler2009,
  author    = {Rafler, Mathias},
  title     = {Gaussian loop- and P{\´o}lya processes : a point process approach},
  publisher = {Universit{\"a}tsverlag Potsdam},
  address   = {Potsdam},
  isbn      = {978-3-86956-029-8},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-38706},
  school      = {Universit{\"a}t Potsdam},
  pages     = {ix, 162},
  year      = {2009},
  abstract  = {This thesis considers on the one hand the construction of point processes via conditional intensities, motivated by the partial Integration of the Campbell measure of a point process. Under certain assumptions on the intensity the existence of such a point process is shown. A fundamental example turns out to be the P{\´o}lya sum process, whose conditional intensity is a generalisation of the P{\´o}lya urn dynamics. A Cox process representation for that point process is shown. A further process considered is a Poisson process of Gaussian loops, which represents a noninteracting particle system derived from the discussion of indistinguishable particles. Both processes are used to define particle systems locally, for which thermodynamic limits are determined.},
  language  = {en}
}
@phdthesis{Petrow2009,
  author    = {Petrow, Theresia},
  title     = {Floods in Germany : analyses of trends, seasonality and circulation patterns},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-37392},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Flood hazard estimations are conducted with a variety of methods. These include flood frequency analysis (FFA), hydrologic and hydraulic modelling, probable maximum discharges as well as climate scenarios. However, most of these methods assume stationarity of the used time series, i.e., the series must not exhibit trends. Against the background of climate change and proven significant trends in atmospheric circulation patterns, it is questionable whether these changes are also reflected in the discharge data. The aim of this PhD thesis is therefore to clarify, in a spatially-explicit manner, whether the available discharge data derived from selected German catchments exhibit trends. Concerning the flood hazard, the suitability of the currently used stationary FFA approaches is evaluated for the discharge data. Moreover, dynamics in atmospheric circulation patterns are studied and the link between trends in these patterns and discharges is investigated. To tackle this research topic, a number of different analyses are conducted. The first part of the PhD thesis comprises the study and trend test of 145 discharge series from catchments, which cover most of Germany for the period 1951-2002. The seasonality and trend pattern of eight flood indicators, such as maximum series and peak-over-threshold series, are analyzed in a spatially-explicit manner. Analyses are performed on different spatial scales: at the local scale, through gauge-specific analyses, and on the catchment-wide and basin scales. Besides the analysis of discharge series, data on atmospheric circulation patterns (CP) are an important source of information, upon which conclusions about the flood hazard can be drawn. The analyses of these circulation patterns (after Hess und Brezowsky) and the study of the link to peak discharges form the second part of the thesis. For this, daily data on the dominant CP across Europe are studied; these are represented by different indicators, which are tested for trend. Moreover, analyses are performed to extract flood triggering circulation patterns and to estimate the flood potential of CPs. Correlations between discharge series and CP indicators are calculated to assess a possible link between them. For this research topic, data from 122 meso-scale catchments in the period 1951-2002 are used. In a third part, the Mulde catchment, a mesoscale sub-catchment of the Elbe basin, is studied in more detail. Fifteen discharge series of different lengths in the period 1910-2002 are available for the seasonally differentiated analysis of the flood potential of CPs and flood influencing landscape parameters. For trend tests of discharge and CP data, different methods are used. The Mann-Kendall test is applied with a significance level of 10\%, ensuring statistically sound results. Besides the test of the entire series for trend, multiple time-varying trend tests are performed with the help of a resampling approach in order to better differentiate short-term fluctuations from long-lasting trends. Calculations of the field significance complement the flood hazard assessment for the studied regions. The present thesis shows that the flood hazard is indeed significantly increasing for selected regions in Germany during the winter season. Especially affected are the middle mountain ranges in Central Germany. This increase of the flood hazard is attributed to a longer persistence of selected CPs during winter. Increasing trends in summer floods are found in the Rhine and Danube catchments, decreasing trends in the Elbe and Weser catchments. Finally, a significant trend towards a reduced diversity of CPs is found causing fewer patterns with longer persistence to dominate the weather over Europe. The detailed study of the Mulde catchment reveals a flood regime with frequent low winter floods and fewer summer floods, which bear, however, the potential of becoming extreme. Based on the results, the use of instationary approaches for flood hazard estimation is recommended in order to account for the detected trends in many of the series. Through this methodology it is possible to directly consider temporal changes in flood series, which in turn reduces the possibility of large under- or overestimations of the extreme discharges, respectively.},
  language  = {en}
}
@phdthesis{Lkhagvadorj2009,
  author    = {Lkhagvadorj, Ariunaa},
  title     = {Fiscal federalism and decentralization in Mongolia},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-41196},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Fiscal federalism has been an important topic among public finance theorists in the last four decades. There is a series of arguments that decentralization of governments enhances growth by improving allocation efficiency. However, the empirical studies have shown mixed results for industrialized and developing countries and some of them have demonstrated that there might be a threshold level of economic development below which decentralization is not effective. Developing and transition countries have developed a variety of forms of fiscal decentralization as a possible strategy to achieve effective and efficient governmental structures. A generalized principle of decentralization due to the country specific circumstances does not exist. Therefore, decentralization has taken place in different forms in various countries at different times, and even exactly the same extent of decentralization may have had different impacts under different conditions. The purpose of this study is to investigate the current state of the fiscal decentralization in Mongolia and to develop policy recommendations for the efficient and effective intergovernmental fiscal relations system for Mongolia. Within this perspective the analysis concentrates on the scope and structure of the public sector, the expenditure and revenue assignment as well as on the design of the intergovernmental transfer and sub-national borrowing. The study is based on data for twenty-one provinces and the capital city of Mongolia for the period from 2000 to 2009. As a former socialist country Mongolia has had a highly centralized governmental sector. The result of the analysis below revealed that the Mongolia has introduced a number of decentralization measures, which followed a top down approach and were slowly implemented without any integrated decentralization strategy in the last decade. As a result Mongolia became de-concentrated state with fiscal centralization. The revenue assignment is lacking a very important element, for instance significant revenue autonomy given to sub-national governments, which is vital for the efficient service delivery at the local level. According to the current assignments of the expenditure and revenue responsibilities most of the provinces are unable to provide a certain national standard of public goods supply. Hence, intergovernmental transfers from the central jurisdiction to the sub-national jurisdictions play an important role for the equalization of the vertical and horizontal imbalances in Mongolia. The critical problem associated with intergovernmental transfers is that there is not a stable, predictable and transparent system of transfer allocation. The amount of transfers to sub-national governments is determined largely by political decisions on ad hoc basis and disregards local differences in needs and fiscal capacity. Thus a fiscal equalization system based on the fiscal needs of the provinces should be implemented. The equalization transfers will at least partly offset the regional disparities in revenues and enable the sub-national governments to provide a national minimum standard of local public goods.},
  language  = {en}
}
@phdthesis{Wotschack2009,
  author    = {Wotschack, Christiane},
  title     = {Eye movements in reading strategies : how reading strategies modulate effects of distributed processing and oculomotor control},
  publisher = {Universit{\"a}tsverlag Potsdam},
  address   = {Potsdam},
  isbn      = {978-3-86956-021-2},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-36846},
  school      = {Universit{\"a}t Potsdam},
  pages     = {213},
  year      = {2009},
  abstract  = {Throughout its empirical research history eye movement research has always been aware of the differences in reading behavior induced by individual differences and task demands. This work introduces a novel comprehensive concept of reading strategy, comprising individual differences in reading style and reading skill as well as reader goals. In a series of sentence reading experiments recording eye movements, the influence of reading strategies on reader- and word-level effects assuming distributed processing has been investigated. Results provide evidence for strategic, top-down influences on eye movement control that extend our understanding of eye guidance in reading.},
  language  = {en}
}
@phdthesis{GuedesCorrea2009,
  author    = {Guedes Corr{\^e}a, Luiz Gustavo},
  title     = {Evolutionary and functional analysis of transcription factors controlling leaf development},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-40038},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Leaves are the main photosynthetic organs of vascular plants, and leaf development is dependent on a proper control of gene expression. Transcription factors (TFs) are global regulators of gene expression that play essential roles in almost all biological processes among eukaryotes. This PhD project focused on the characterization of the sink-to-source transition of Arabidopsis leaves and on the analysis of TFs that play a role in early leaf development. The sink-to-source transition occurs when the young emerging leaves (net carbon importers) acquire a positive photosynthetic balance and start exporting photoassimilates. We have established molecular and physiological markers (i.e., CAB1 and CAB2 expression levels, AtSUC2 and AtCHoR expression patterns, chlorophyll and starch levels, and photosynthetic electron transport rates) to identify the starting point of the transition, especially because the sink-to-source is not accompanied by a visual phenotype in contrast to other developmental transitions, such as the mature-to-senescent transition of leaves. The sink-to-source transition can be divided into two different processes: one light dependent, related to photosynthesis and light responses; and one light independent or impaired, related to the changes in the vascular tissue that occur when leaves change from an import to an export mode. Furthermore, starch, but not sucrose, has been identified as one of the potential signalling molecules for this transition. The expression level of 1880 TFs during early leaf development was assessed by qRTPCR, and 153 TFs were found to exhibit differential expression levels of at least 5-fold. GRF, MYB and SRS are TF families, which are overrepresented among the differentially expressed TFs. Additionally, processes like cell identity acquisition, formation of the epidermis and leaf development are overrepresented among the differentially expressed TFs, which helps to validate the results obtained. Two of these TFs were further characterized. bZIP21 is a gene up-regulated during the sink-to-source and mature-to-senescent transitions. Its expression pattern in leaves overlaps with the one observed for AtCHoR, therefore it constitutes a good marker for the sink-to-source transition. Homozygous null mutants of bZIP21 could not be obtained, indicating that the total absence of bZIP21 function may be lethal to the plant. Phylogenetic analyses indicate that bZIP21 is an orthologue of Liguleless2 from maize. In these analyses, we identified that the whole set of bZIPs in plants originated from four founder genes, and that all bZIPs from angiosperms can be classified into 13 groups of homologues and 34 Possible Groups of Orthologues (PoGOs). bHLH64 is a gene highly expressed in early sink leaves, its expression is downregulated during the mature-to-senescent transition. Null mutants of bHLH64 are characterized by delayed bolting when compared to the wild-type; this indicates a possible delay in the sink-to-source transition or the retention of a juvenile identity. A third TF, Dof4, was also characterized. Dof4 is neither differentially expressed during the sink-to-source nor during the senescent-to-mature transition, but a null mutant of Dof4 develops bigger leaves than the wild-type and forms a greater number of siliques. The Dof4 null mutant has proven to be a good background for biomass accumulation analysis. Though not overrepresented during the sink-to-source transition, NAC transcription factors seem to contribute significantly to the mature-to-senescent transition. Twenty two NACs from Arabidopsis and 44 from rice are differentially expressed during late stages of leaf development. Phylogenetic analyses revealed that most of these NACs cluster into three big groups of homologues, indicating functional conservation between eudicots and monocots. To prove functional conservation of orthologues, the expression of ten NAC genes of barley was analysed. Eight of the ten NAC genes were found to be differentially expressed during senescence. The use of evolutionary approaches combined with functional studies is thus expected to support the transfer of current knowledge of gene control gained in model species to crops.},
  language  = {en}
}
@phdthesis{SanockaPagel2009,
  author    = {Sanocka-Pagel, Elżbieta},
  title     = {Estetyczne myślenie w tw{\´o}rczości Andrzeja Stasiuka : w kontekście mityzacji Europy Wschodniej},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-60862},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {W pracy został przedstawiony innowacyjny spos{\´o}b patrzenia na Europę Wschodnią, widoczny w tw{\´o}rczości Andrzeja Stasiuka odbiegający od klasycznego, czyli "r{\´o}wnoleżnikowego" widzenia tej części kontynentu w odwiecznej konfrontacji i nieustannych por{\´o}wnań z Zachodem. Tw{\´o}rczość tego artysty skupia się na zaniedbanym ,,pasie południowym". 1. Stan badań Tw{\´o}rczość pisarza cieszy się ogromną popularnością w kraju i za granicą. Krytyka literacka z wielką uwagą śledzi kolejno pojawiające się dzieła, niemniej jednak do tej pory stan badań jest stosunkowo niewielki. Nie powstało żadne kompendium wiedzy o wczesnej tw{\´o}rczości pisarza czy monograficzne opracowanie obejmujące ten sam okres tw{\´o}rczości artysty. Do tej pory uwaga krytyki i badaczy zwr{\´o}cona została gł{\´o}wnie na pierwsze utwory powstałe w latach dziewięćdziesiątych. 2. Cel pracy Gł{\´o}wnym celem dysertacji była analiza tw{\´o}rczości Stasiuka w odniesieniu do zagadnień i problem{\´o}w obecnych w filozofii i estetyce takich jak: kategoria piękna i brzydoty w ujęciu ontologicznym, metafizycznym i epistemologicznym, badanie wybranych utwor{\´o}w w kontekście niekonwencjonalnej autobiografii artystycznej, jak r{\´o}wnież nawiązanie do mityzacji Europy Wschodniej z odwołaniem się do prozy Brunona Schulza. Utworami łączącymi te zagadnienia ujmując chronologicznie są: „Opowieści galicyjskie"(1995), „Dukla"(1997), „Dziennik okrętowy"(2000), „Jadąc do Babadag"(2004). Teksty te łączy wsp{\´o}lny kontekst estetyczny, autobiograficzny, mityczny. 3. Podział i budowa pracy Niniejsza praca składa się z trzech części: pierwszej - „Estetyka brzydoty", drugiej - „Homo geographicus Fascynacja geografią w kontekście autobiograficznym" stanowiącą pomost między kontekstem estetycznym i mitycznym oraz trzeciej: „Mityzacja Europy Wschodniej. Inspiracja Schulzem". 4. Uwagi końcowe W zamykających na koniec wnioskach i uwagach warto podkreślić, że w pracy zostały poddane analizie problemy omijane przez wielu badaczy. Celem dysertacji było przedstawienie tw{\´o}rczości tego pisarza w niepodejmowanych do tej pory obszarach tematycznych. Spojrzenie na przedstawioną rzeczywistość i jej zjawiska tym razem w aspekcie estetycznym i mitycznym pozwoliły w zupełnie inny spos{\´o}b spojrzeć na wybrane utwory Andrzeja Stasiuka.},
  language  = {mul}
}
@phdthesis{Ehmann2009,
  author    = {Ehmann, Tanja},
  title     = {Erfassung und F{\"o}rderung metakognitiver und motivationaler F{\"a}higkeiten : ein halbstandardisiertes Lerntagebuch f{\"u}r Sch{\"u}lerinnen und Sch{\"u}ler mit Migrationshintergrund},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-51227},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Das folgende Forschungsprojekt besch{\"a}ftigt sich mit metakognitiven und motivationalen F{\"a}higkeiten als Teilbereiche des selbstgesteuerten Lernens. Es untersucht den Nutzen und die Grenzen von Lerntageb{\"u}chern, die zugeschnitten wurden auf Grundsch{\"u}lerinnen und Grundsch{\"u}ler mit Migrationshintergrund. Das Ziel der Studie war es herauszufinden, ob und wie selbststeurungsbezogene Lernprozesse durch den Einsatz von Lerntageb{\"u}chern gemessen und ver{\"a}ndert werden k{\"o}nnen. Hierzu f{\"u}hrten 28 Grundsch{\"u}lerinnen und Grundsch{\"u}ler 14 Wochen lang w{\"a}hrend des Unterrichts ein halbstandardisiertes Lerntagebuch in Anlehnung an Wohland/Spinath (2004). Zur Messung von Ver{\"a}nderungen in metakognitiven und motivationalen F{\"a}higkeiten f{\"u}llten 43 Sch{\"u}lerinnen und Sch{\"u}ler zweier Experimentalgruppen und einer Kontrollgruppe vor und nach der Lerntagebuch-Intervention standardisierte Frageb{\"o}gen aus. Weiterhin wurden die 28 Lerntageb{\"u}cher der Experimentalgruppen inhalts- und prozessanalytisch ausgewertet. Außerdem wurden Interviews mit den Lehrkr{\"a}ften {\"u}ber ihre Unterrichtspraxis gef{\"u}hrt und einige Sch{\"u}lerinnen und Sch{\"u}ler zu ihrer Wahrnehmung der Lerntagebucharbeit befragt. Die Ergebnisse der Analyse der Lerntagebuchdaten zeigen, dass die 28 Sch{\"u}lerinnen und Sch{\"u}ler mit Migrationshintergrund erfolgreich ihren Lernprozess bei der Bearbeitung einer Aufgabe verbalisierten. Sie haben weiterhin erfolgreich Vorhersagen {\"u}ber ihre Vorgehensweisen zur L{\"o}sung einer Aufgabe getroffen. Die Lerntageb{\"u}cher unterst{\"u}tzten sie darin, ihre metakognitiven Erfahrungen (Efklides/Petkaki 2005) zu kalibrieren (Desoete/Roeyers 2006). Den Lernenden ist es gelungen, ihre Repr{\"a}sentationen {\"u}ber das L{\"o}sen einer Aufgabe aufeinander (fein-) abzustimmen, w{\"a}hrend sie daran arbeiteten. Mit Hilfe von Zeitreihenanalysen konnte gezeigt werden, dass die Sch{\"u}lerinnen und Sch{\"u}ler die Fragen im Lerntagebuch gegen Ende der Intervention oberfl{\"a}chlicher beantworteten und die Lerntageb{\"u}cher tendenziell weniger h{\"a}ufig ausgef{\"u}llt wurden (negative Trends). Eine Erkl{\"a}rung f{\"u}r die geringere Antworth{\"a}ufigkeit, die zu negativen Verlaufskurven {\"u}ber die Zeit f{\"u}hrten, k{\"o}nnte sein, dass die Instruktionsdichte durch den Mix an offenen und geschlossenen Fragen im Lerntagebuch zu hoch war. Die Lernenden haben sich m{\"o}glicherweise so an die Fragen bzw. Antwortformate gew{\"o}hnt, dass die Motivation, in das Lerntagebuch zu schreiben, geringer wurde.},
  language  = {de}
}
@phdthesis{Scherling2009,
  author    = {Scherling, Christian},
  title     = {Environmental Metabolomics - Metabolomische Studien zu Biodiversit{\"a}t, ph{\"a}notypischer Plastizit{\"a}t und biotischen Wechselwirkungen von Pflanzen},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-32411},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {Ein genereller Ansatz zur Charakterisierung von biologischen Systemen bietet die Untersuchung des Metaboloms, dessen Analyse als „Metabolomics" bezeichnet wird. "Omics"- Technologien haben das Ziel, ohne Selektionskriterien m{\"o}glichst alle Bestandteile einer biologischen Probe zu detektieren (identifizieren und quantifizieren), um daraus R{\"u}ckschl{\"u}sse auf nicht vorhersehbare und somit neuartige Korrelationen in biologischen Systemen zu ziehen. Ein zentrales Dogma in der Biologie besteht in der Kausalit{\"a}t zwischen Gen - Enzym - Metabolite. Perturbationen auf einer Ebene rufen systemische Antworten hervor, die in einem ver{\"a}nderten Ph{\"a}notyp m{\"u}nden k{\"o}nnen. Metabolite sind die Endprodukte von zellul{\"a}ren regulatorischen Prozessen, deren Abundanz durch die Resonanz auf genetische Modifikationen oder Umwelteinfl{\"u}sse zur{\"u}ckzuf{\"u}hren ist. Zudem repr{\"a}sentieren Metabolite ultimativ den Ph{\"a}notyp eines Organismus und haben die F{\"a}higkeit als Biomarker zu fungieren. Die integrale Analyse verschiedenster Stoffwechselwegen wie Krebszyklus, Pentosephosphatzyklus oder Calvinzyklus offeriert die Identifikation von metabolischen Mustern. In dieser Arbeit wurden sowohl das targeted Profiling via GC-TOF-MS als auch das untargeted Profiling via GC-TOF-MS und LC-FT-MS als analytische Strategien genutzt, um biologische Systeme anhand ihrer Metabolite zu charakterisieren und um physiologische Muster als Resonanz auf endogene oder exogene Stimuli zu erkennen. Dabei standen die metabolische, ph{\"a}notypische und genotypische Plastizit{\"a}t von Pflanzen im Fokus der Untersuchungen. Metabolische Varianzen eines Ph{\"a}notyps reflektieren die genotyp-abh{\"a}ngige Resonanz des Organismus auf umweltbedingte Parameter (abiotischer und biotischer Stress, Entwicklung) und k{\"o}nnen mit sensitiven Metabolite Profiling Methoden determiniert werden. Diese Anwendungen haben unter anderem auch zum Begriff des „Environmental Metabolomics" gef{\"u}hrt. In Kapitel 2 wurde der Einfluss biotischer Interaktionen von endophytischen Bakterien auf den Metabolismus von Pappelklonen untersucht; Kapitel 3 betrachtet die metabolische Plastizit{\"a}t von Pflanzen im Freiland auf ver{\"a}nderte biotische Interaktionsmuster (Konkurrenz/Diversit{\"a}t/Artenzusammensetzung); Abschließend wurde in Kapitel 4 der Einfluss von spezifischen genetischen Modifikationen an Peroxisomen und den daraus resultierenden ver{\"a}nderten metabolischen Fluss der Photorespiration dargestellt. Aufgrund der sensitiven Analyse- Technik konnten metabolische Ph{\"a}notypen, die nicht zwingend in einen morphologischen Ph{\"a}notyp m{\"u}ndeten, in drei biologischen Systemen identifiziert und in einen stoffwechselphysiologischen Kontext gestellt werden. Die drei untersuchten biologischen Systeme - in vitro- Pappeln, Gr{\"u}nland- Arten (Arrhenatherion-Gesellschaft) und der Modellorganismus (Arabidopsis) - belegten anschaulich die Plastizit{\"a}t des Metabolismus der Arten, welche durch endogene oder exogene Faktoren erzeugt wurden.},
  language  = {de}
}