@phdthesis{Ploetner2015, author = {Pl{\"o}tner, Bj{\"o}rn}, title = {F2 hybrid chlorosis in a cross between the Arabidopsis thaliana accessions Shahdara and Lovvik-5}, school = {Universit{\"a}t Potsdam}, pages = {99}, year = {2015}, language = {en} } @article{SafaviHusainVasishth2016, author = {Safavi, Molood S. and Husain, Samar and Vasishth, Shravan}, title = {Dependency Resolution Difficulty Increases with Distance in Persian Separable Complex Predicates}, series = {Frontiers in psychology}, volume = {7}, journal = {Frontiers in psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2016.00403}, pages = {1 -- 15}, year = {2016}, abstract = {Delaying the appearance of a verb in a noun-verb dependency tends to increase processing difficulty at the verb; one explanation for this locality effect is decay and/or interference of the noun in working memory. Surprisal, an expectation-based account, predicts that delaying the appearance of a verb either renders it no more predictable or more predictable, leading respectively to a prediction of no effect of distance or a facilitation. Recently, Husain et al. (2014) suggested that when the exact identity of the upcoming verb is predictable (strong predictability), increasing argument-verb distance leads to facilitation effects, which is consistent with surprisal; but when the exact identity of the upcoming verb is not predictable (weak predictability), locality effects are seen. We investigated Husain et al.'s proposal using Persian complex predicates (CPs), which consist of a non-verbal element—a noun in the current study—and a verb. In CPs, once the noun has been read, the exact identity of the verb is highly predictable (strong predictability); this was confirmed using a sentence completion study. In two self-paced reading (SPR) and two eye-tracking (ET) experiments, we delayed the appearance of the verb by interposing a relative clause (Experiments 1 and 3) or a long PP (Experiments 2 and 4). We also included a simple Noun-Verb predicate configuration with the same distance manipulation; here, the exact identity of the verb was not predictable (weak predictability). Thus, the design crossed Predictability Strength and Distance. We found that, consistent with surprisal, the verb in the strong predictability conditions was read faster than in the weak predictability conditions. Furthermore, greater verb-argument distance led to slower reading times; strong predictability did not neutralize or attenuate the locality effects. As regards the effect of distance on dependency resolution difficulty, these four experiments present evidence in favor of working memory accounts of argument-verb dependency resolution, and against the surprisal-based expectation account of Levy (2008). However, another expectation-based measure, entropy, which was computed using the offline sentence completion data, predicts reading times in Experiment 1 but not in the other experiments. Because participants tend to produce more ungrammatical continuations in the long-distance condition in Experiment 1, we suggest that forgetting due to memory overload leads to greater entropy at the verb.}, language = {en} } @article{LiuSchadKuschpeletal.2016, author = {Liu, Shuyan and Schad, Daniel and Kuschpel, Maxim S. and Rapp, Michael A. and Heinz, Andreas}, title = {Music and Video Gaming during Breaks}, series = {PLoS one}, volume = {11}, journal = {PLoS one}, number = {3}, publisher = {Public Library of Science}, address = {Lawrence, Kan.}, issn = {1932-6203}, doi = {10.1371/JOURNAL.PONE.0150165}, pages = {1 -- 12}, year = {2016}, abstract = {Different systems for habitual versus goal-directed control are thought to underlie human decision-making. Working memory is known to shape these decision-making systems and their interplay, and is known to support goal-directed decision making even under stress. Here, we investigated if and how decision systems are differentially influenced by breaks filled with diverse everyday life activities known to modulate working memory performance. We used a within-subject design where young adults listened to music and played a video game during breaks interleaved with trials of a sequential two-step Markov decision task, designed to assess habitual as well as goal-directed decision making. Based on a neurocomputational model of task performance, we observed that for individuals with a rather limited working memory capacity video gaming as compared to music reduced reliance on the goal-directed decision-making system, while a rather large working memory capacity prevented such a decline. Our findings suggest differential effects of everyday activities on key decision-making processes.}, language = {en} } @article{WackerPiephoHarwoodetal.2016, author = {Wacker, Alexander and Piepho, Maike and Harwood, John L. and Guschina, Irina A. and Arts, Michael T.}, title = {Light-Induced Changes in Fatty Acid Profiles of Specific Lipid Classes in Several Freshwater Phytoplankton Species}, series = {Frontiers in plant science : FPLS}, volume = {7}, journal = {Frontiers in plant science : FPLS}, publisher = {Frontiers Media}, address = {Lausanne}, issn = {1664-462X}, doi = {10.3389/fpls.2016.00264}, pages = {1 -- 13}, year = {2016}, abstract = {We tested the influence of two light intensities [40 and 300 μmol PAR / (m2s)] on the fatty acid composition of three distinct lipid classes in four freshwater phytoplankton species. We chose species of different taxonomic classes in order to detect potentially similar reaction characteristics that might also be present in natural phytoplankton communities. From samples of the bacillariophyte Asterionella formosa, the chrysophyte Chromulina sp., the cryptophyte Cryptomonas ovata and the zygnematophyte Cosmarium botrytis we first separated glycolipids (monogalactosyldiacylglycerol, digalactosyldiacylglycerol, and sulfoquinovosyldiacylglycerol), phospholipids (phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, and phosphatidylserine) as well as non-polar lipids (triacylglycerols), before analyzing the fatty acid composition of each lipid class. High variation in the fatty acid composition existed among different species. Individual fatty acid compositions differed in their reaction to changing light intensities in the four species. Although no generalizations could be made for species across taxonomic classes, individual species showed clear but small responses in their ecologically-relevant omega-3 and omega-6 polyunsaturated fatty acids (PUFA) in terms of proportions and of per tissue carbon quotas. Knowledge on how lipids like fatty acids change with environmental or culture conditions is of great interest in ecological food web studies, aquaculture, and biotechnology, since algal lipids are the most important sources of omega-3 long-chain PUFA for aquatic and terrestrial consumers, including humans.}, language = {en} } @article{NicenboimLogacevGatteietal.2016, author = {Nicenboim, Bruno and Logacev, Pavel and Gattei, Carolina and Vasishth, Shravan}, title = {When High-Capacity Readers Slow Down and Low-Capacity Readers Speed Up}, series = {Frontiers in psychology}, volume = {7}, journal = {Frontiers in psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2016.00280}, pages = {1 -- 24}, year = {2016}, abstract = {We examined the effects of argument-head distance in SVO and SOV languages (Spanish and German), while taking into account readers' working memory capacity and controlling for expectation (Levy, 2008) and other factors. We predicted only locality effects, that is, a slowdown produced by increased dependency distance (Gibson, 2000; Lewis and Vasishth, 2005). Furthermore, we expected stronger locality effects for readers with low working memory capacity. Contrary to our predictions, low-capacity readers showed faster reading with increased distance, while high-capacity readers showed locality effects. We suggest that while the locality effects are compatible with memory-based explanations, the speedup of low-capacity readers can be explained by an increased probability of retrieval failure. We present a computational model based on ACT-R built under the previous assumptions, which is able to give a qualitative account for the present data and can be tested in future research. Our results suggest that in some cases, interpreting longer RTs as indexing increased processing difficulty and shorter RTs as facilitation may be too simplistic: The same increase in processing difficulty may lead to slowdowns in high-capacity readers and speedups in low-capacity ones. Ignoring individual level capacity differences when investigating locality effects may lead to misleading conclusions.}, language = {en} } @article{RaetzelWilkensMenzel2016, author = {R{\"a}tzel, Dennis and Wilkens, Martin and Menzel, Ralf}, title = {Gravitational properties of light}, series = {New journal of physics : the open-access journal for physics}, volume = {18}, journal = {New journal of physics : the open-access journal for physics}, publisher = {IOP Science}, address = {London}, issn = {1367-2630}, doi = {10.1088/1367-2630/18/2/023009}, pages = {1 -- 16}, year = {2016}, abstract = {The gravitational field of a laser pulse of finite lifetime, is investigated in the framework of linearized gravity. Although the effects are very small, they may be of fundamental physical interest. It is shown that the gravitational field of a linearly polarized light pulse is modulated as the norm of the corresponding electric field strength, while no modulations arise for circular polarization. In general, the gravitational field is independent of the polarization direction. It is shown that all physical effects are confined to spherical shells expanding with the speed of light, and that these shells are imprints of the spacetime events representing emission and absorption of the pulse. Nearby test particles at rest are attracted towards the pulse trajectory by the gravitational field due to the emission of the pulse, and they are repelled from the pulse trajectory by the gravitational field due to its absorption. Examples are given for the size of the attractive effect. It is recovered that massless test particles do not experience any physical effect if they are co-propagating with the pulse, and that the acceleration of massless test particles counter-propagating with respect to the pulse is four times stronger than for massive particles at rest. The similarities between the gravitational effect of a laser pulse and Newtonian gravity in two dimensions are pointed out. The spacetime curvature close to the pulse is compared to that induced by gravitational waves from astronomical sources.}, language = {en} } @article{HoehleFritzscheMueller2016, author = {H{\"o}hle, Barbara and Fritzsche, Tom and M{\"u}ller, Anja}, title = {Children's Comprehension of Sentences with Focus Particles and the Role of Cognitive Control}, series = {PLoS one}, volume = {11}, journal = {PLoS one}, number = {3}, publisher = {PLoS}, address = {Lawrence, Kan.}, issn = {1932-6203}, doi = {10.1371/journal.pone.0149870}, pages = {1 -- 27}, year = {2016}, abstract = {Children's interpretations of sentences containing focus particles do not seem adult-like until school age. This study investigates how German 4-year-old children comprehend sentences with the focus particle 'nur' (only) by using different tasks and controlling for the impact of general cognitive abilities on performance measures. Two sentence types with 'only' in either pre-subject or pre-object position were presented. Eye gaze data and verbal responses were collected via the visual world paradigm combined with a sentence-picture verification task. While the eye tracking data revealed an adult-like pattern of focus particle processing, the sentence-picture verification replicated previous findings of poor comprehension, especially for 'only' in pre-subject position. A second study focused on the impact of general cognitive abilities on the outcomes of the verification task. Working memory was related to children's performance in both sentence types whereas inhibitory control was selectively related to the number of errors for sentences with 'only' in pre-subject position. These results suggest that children at the age of 4 years have the linguistic competence to correctly interpret sentences with focus particles, which-depending on specific task demands-may be masked by immature general cognitive abilities.}, language = {en} } @article{BrandKoch2016, author = {Brand, Ralf and Koch, Helen}, title = {Using Caffeine Pills for Performance Enhancement}, series = {Frontiers in psychology}, volume = {7}, journal = {Frontiers in psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2016.00101}, pages = {1 -- 11}, year = {2016}, abstract = {Recent research has indicated that university students sometimes use caffeine pills for neuroenhancement (NE; non-medical use of psychoactive substances or technology to produce a subjective enhancement in psychological functioning and experience), especially during exam preparation. In our factorial survey experiment, we manipulated the evidence participants were given about the prevalence of NE amongst peers and measured the resulting effects on the psychological predictors included in the Prototype-Willingness Model of risk behavior. Two hundred and thirty-one university students were randomized to a high prevalence condition (read faked research results overstating usage of caffeine pills amongst peers by a factor of 5; 50\%), low prevalence condition (half the estimated prevalence; 5\%) or control condition (no information about peer prevalence). Structural equation modeling confirmed that our participants' willingness and intention to use caffeine pills in the next exam period could be explained by their past use of neuroenhancers, attitude to NE and subjective norm about use of caffeine pills whilst image of the typical user was a much less important factor. Provision of inaccurate information about prevalence reduced the predictive power of attitude with respect to willingness by 40-45\%. This may be because receiving information about peer prevalence which does not fit with their perception of the social norm causes people to question their attitude. Prevalence information might exert a deterrent effect on NE via the attitude-willingness association. We argue that research into NE and deterrence of associated risk behaviors should be informed by psychological theory.}, language = {en} } @article{Paape2016, author = {Paape, Dario L. J. F.}, title = {Filling the Silence}, series = {Frontiers in psychology}, volume = {7}, journal = {Frontiers in psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2016.00027}, pages = {1 -- 18}, year = {2016}, abstract = {In a self-paced reading experiment, we investigated the processing of sluicing constructions ("sluices") whose antecedent contained a known garden-path structure in German. Results showed decreased processing times for sluices with garden-path antecedents as well as a disadvantage for antecedents with non-canonical word order downstream from the ellipsis site. A post-hoc analysis showed the garden-path advantage also to be present in the region right before the ellipsis site. While no existing account of ellipsis processing explicitly predicted the results, we argue that they are best captured by combining a local antecedent mismatch effect with memory trace reactivation through reanalysis.}, language = {en} } @phdthesis{Saleh2016, author = {Saleh, Eyad}, title = {Securing Multi-tenant SaaS Environments}, school = {Universit{\"a}t Potsdam}, pages = {108}, year = {2016}, abstract = {Software-as-a-Service (SaaS) offers several advantages to both service providers and users. Service providers can benefit from the reduction of Total Cost of Ownership (TCO), better scalability, and better resource utilization. On the other hand, users can use the service anywhere and anytime, and minimize upfront investment by following the pay-as-you-go model. Despite the benefits of SaaS, users still have concerns about the security and privacy of their data. Due to the nature of SaaS and the Cloud in general, the data and the computation are beyond the users' control, and hence data security becomes a vital factor in this new paradigm. Furthermore, in multi-tenant SaaS applications, the tenants become more concerned about the confidentiality of their data since several tenants are co-located onto a shared infrastructure. To address those concerns, we start protecting the data from the provisioning process by controlling how tenants are being placed in the infrastructure. We present a resource allocation algorithm designed to minimize the risk of co-resident tenants called SecPlace. It enables the SaaS provider to control the resource (i.e., database instance) allocation process while taking into account the security of tenants as a requirement. Due to the design principles of the multi-tenancy model, tenants follow some degree of sharing on both application and infrastructure levels. Thus, strong security-isolation should be present. Therefore, we develop SignedQuery, a technique that prevents one tenant from accessing others' data. We use the Signing Concept to create a signature that is used to sign the tenant's request, then the server can verifies the signature and recognizes the requesting tenant, and hence ensures that the data to be accessed is belonging to the legitimate tenant. Finally, Data confidentiality remains a critical concern due to the fact that data in the Cloud is out of users' premises, and hence beyond their control. Cryptography is increasingly proposed as a potential approach to address such a challenge. Therefore, we present SecureDB, a system designed to run SQL-based applications over an encrypted database. SecureDB captures the schema design and analyzes it to understand the internal structure of the data (i.e., relationships between the tables and their attributes). Moreover, we determine the appropriate partialhomomorphic encryption scheme for each attribute where computation is possible even when the data is encrypted. To evaluate our work, we conduct extensive experiments with di↵erent settings. The main use case in our work is a popular open source HRM application, called OrangeHRM. The results show that our multi-layered approach is practical, provides enhanced security and isolation among tenants, and have a moderate complexity in terms of processing encrypted data.}, language = {en} } @article{MuellerCarlsohnMuelleretal.2016, author = {M{\"u}ller, Steffen and Carlsohn, Anja and M{\"u}ller, Juliane and Baur, Heiner and Mayer, Frank}, title = {Influence of Obesity on Foot Loading Characteristics in Gait for Children Aged 1 to 12 Years}, series = {PLoS one}, volume = {11}, journal = {PLoS one}, number = {2}, publisher = {Public Library of Science}, address = {Lawrence, Kan.}, issn = {1932-6203}, doi = {10.1371/journal.pone.0149924}, year = {2016}, abstract = {Background Overweight and obesity are increasing health problems that are not restricted to adults only. Childhood obesity is associated with metabolic, psychological and musculoskeletal comorbidities. However, knowledge about the effect of obesity on the foot function across maturation is lacking. Decreased foot function with disproportional loading characteristics is expected for obese children. The aim of this study was to examine foot loading characteristics during gait of normal-weight, overweight and obese children aged 1-12 years. Methods A total of 10382 children aged one to twelve years were enrolled in the study. Finally, 7575 children (m/f: n = 3630/3945; 7.0 +/- 2.9yr; 1.23 +/- 0.19m; 26.6 +/- 10.6kg; BMI: 17.1 +/- 2.4kg/m(2)) were included for (complete case) data analysis. Children were categorized to normalweight (>= 3rd and <90th percentile; n = 6458), overweight (>= 90rd and <97th percentile; n = 746) or obese (>97th percentile; n = 371) according to the German reference system that is based on age and gender-specific body mass indices (BMI). Plantar pressure measurements were assessed during gait on an instrumented walkway. Contact area, arch index (AI), peak pressure (PP) and force time integral (FTI) were calculated for the total, fore-, mid-and hindfoot. Data was analyzed descriptively (mean +/- SD) followed by ANOVA/Welch-test (according to homogeneity of variances: yes/no) for group differences according to BMI categorization (normal-weight, overweight, obesity) and for each age group 1 to 12yrs (post-hoc Tukey Kramer/Dunnett's C; alpha = 0.05). Results Mean walking velocity was 0.95 +/- 0.25 m/s with no differences between normal-weight, overweight or obese children (p = 0.0841). Results show higher foot contact area, arch index, peak pressure and force time integral in overweight and obese children (p< 0.001). Obese children showed the 1.48-fold (1 year-old) to 3.49-fold (10 year-old) midfoot loading (FTI) compared to normal-weight. Conclusion Additional body mass leads to higher overall load, with disproportional impact on the midfoot area and longitudinal foot arch showing characteristic foot loading patterns. Already the feet of one and two year old children are significantly affected. Childhood overweight and obesity is not compensated by the musculoskeletal system. To avoid excessive foot loading with potential risk of discomfort or pain in childhood, prevention strategies should be developed and validated for children with a high body mass index and functional changes in the midfoot area. The presented plantar pressure values could additionally serve as reference data to identify suspicious foot loading patterns in children.}, language = {en} } @phdthesis{Quast2015, author = {Quast, Robert B.}, title = {Synthesis and site-directed modification of membrane proteins using non-canonical amino acids in a cell-free system derived from cultured Spodoptera frugiperda cells}, school = {Universit{\"a}t Potsdam}, pages = {87}, year = {2015}, language = {en} } @phdthesis{Kondic2015, author = {Kondic, Todor}, title = {Hall-MHD Instabilities of Shear Flows in Neutron Stars}, school = {Universit{\"a}t Potsdam}, pages = {80}, year = {2015}, language = {en} } @phdthesis{Pratsch2016, author = {Pratsch, Stephanie}, title = {The Role of Aspirations in Negotiation}, series = {Schriftenreihe zum Verhandlungsmanagement ; 4}, journal = {Schriftenreihe zum Verhandlungsmanagement ; 4}, publisher = {Hamburg}, address = {Kovac}, isbn = {978-3-8300-9006-9}, school = {Universit{\"a}t Potsdam}, pages = {122}, year = {2016}, abstract = {Buyer-seller negotiations have significant impact on a company's profitability, which makes practitioners aim at maximizing their performance. One lever for increasing bargaining performance is to pursue a clearly defined aspiration, i.e. one's most desired outcome. In this context, the author explores the role of such aspirations in the three negotiation phases: preparation, bargaining, and striking a deal. She investigates determinants of aspirations, unintended consequences such as unethical bargaining behavior, and the consequences of overly ambitious aspirations. As a result, she does not only close existing gaps in negotiation research, but also derives valuable implications for practitioners}, language = {en} } @phdthesis{Deffa2016, author = {Deffa, Oromiya-Jalata}, title = {Discursive Construction of Bicultural Identity}, series = {Duisburger Arbeiten zur Sprach- und Kulturwissenschaft ; 113}, journal = {Duisburger Arbeiten zur Sprach- und Kulturwissenschaft ; 113}, publisher = {Lang}, address = {Frankfurt am Main}, isbn = {978-3-631-67312-6}, school = {Universit{\"a}t Potsdam}, pages = {233}, year = {2016}, abstract = {The author examines the cultural identity development of Oromo-Americans in Minnesota, an ethnic group originally located within the national borders of Ethiopia. Earlier studies on language and cultural identity have shown that the degree of ethnic orientation of minorities commonly decreases from generation to generation. Yet oppression and a visible minority status were identified as factors delaying the process of de-ethnicization. Given that Oromos fled persecution in Ethiopia and are confronted with the ramifications of a visible minority status in the U.S., it can be expected that they have retained strong ties to their ethnic culture. This study, however, came to a more complex and theory-building result.}, language = {en} } @article{PrinzHeckElleriketal.2016, author = {Prinz, Julia and Heck, Christian and Ellerik, Lisa and Merk, Virginia and Bald, Ilko}, title = {DNA origami based Au-Ag-core-shell nanoparticle dimers with single-molecule SERS sensitivity}, series = {Nanoscale}, journal = {Nanoscale}, number = {8}, publisher = {RSC Publishing}, address = {Cambridge}, doi = {10.1039/C5NR08674D}, pages = {5612 -- 5620}, year = {2016}, abstract = {DNA origami nanostructures are a versatile tool to arrange metal nanostructures and other chemical entities with nanometer precision. In this way gold nanoparticle dimers with defined distance can be constructed, which can be exploited as novel substrates for surface enhanced Raman scattering (SERS). We have optimized the size, composition and arrangement of Au/Ag nanoparticles to create intense SERS hot spots, with Raman enhancement up to 1010, which is sufficient to detect single molecules by Raman scattering. This is demonstrated using single dye molecules (TAMRA and Cy3) placed into the center of the nanoparticle dimers. In conjunction with the DNA origami nanostructures novel SERS substrates are created, which can in the future be applied to the SERS analysis of more complex biomolecular targets, whose position and conformation within the SERS hot spot can be precisely controlled.}, language = {en} } @article{MondalMarquardtJaniaketal.2016, author = {Mondal, Suvendu Sekhar and Marquardt, Dorothea and Janiak, Christoph and Holdt, Hans-J{\"u}rgen}, title = {Use of a 4,5-dicyanoimidazolate anion based ionic liquid for the synthesis of iron and silver nanoparticles}, series = {Dalton transactions : an international journal of inorganic chemistry}, journal = {Dalton transactions : an international journal of inorganic chemistry}, number = {45}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1477-9226}, doi = {10.1039/C6DT00225K}, pages = {5476 -- 5483}, year = {2016}, abstract = {Sixteen new ionic liquids (ILs) with tetraethylammonium, 1-butyl-3-methylimidazolium, 3-methyl-1-octylimidazolium and tetrabutylphosphonium cations paired with 2-substituted 4,5-dicyanoimidazolate anions (substituent at C2 = methyl, trifluoromethyl, pentafluoroethyl, N,N′-dimethyl amino and nitro) have been synthesized and characterized by using differential scanning calorimetry (DSC), thermogravimetric analysis (TGA). The effects of cation and anion type and structure of the resulting ILs, including several room temperature ionic liquids (RTILs), are reflected in the crystallization, melting points and thermal decomposition of the ILs. ILs exhibited large liquid and crystallization ranges and formed glasses on cooling with glass transition temperatures in the range of -22 to -71 °C. We selected one of the newly designed ILs due to its bigger size, compared to the common conventional IL anion and high electron-withdrawing nitrile group leads to an overall stabilization anion that may stabilize the metal nanoparticles. Stable and better separated iron and silver nanoparticles are obtained by the decomposition of corresponding Fe2(CO)9 and AgPF6, respectively, under N2-atmosphere in newly designed nitrile functionalized 4,5-dicyanoimidazolate anion based IL. Very small and uniform size for Fe-nanoparticles of about 1.8 ± 0.6 nm were achieved without any additional stabilizers or capping molecules. Comparatively bigger size of Ag-nanoparticles was obtained through the reduction of AgPF6 by hydrogen gas. Additionally, the AgPF6 precursor was decomposed under microwave irradiation (MWI), fabricating nut-in-shell-like, that is, core-separated-from-shell Ag-nano-structures.}, language = {en} } @article{KlaperWessigLinker2015, author = {Klaper, M. and Wessig, Pablo and Linker, Torsten}, title = {Base catalysed decomposition of anthracene endoperoxide}, series = {Chemical communications : ChemComm}, journal = {Chemical communications : ChemComm}, number = {52}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1364-548X}, doi = {10.1039/C5CC08606J}, pages = {1210 -- 1213}, year = {2015}, abstract = {Catalytic amounts of a weak base are sufficient to induce the decomposition of anthracene endoperoxides to anthraquinone. The mechanism has been elucidated by isolation of intermediates in combination with DFT calculations. The whole process is suitable for the convenient generation of hydrogen peroxide under very mild conditions.}, language = {en} } @article{MatisSchoenbornSaalfrank2015, author = {Matis, Jochen Ren{\´e} and Sch{\"o}nborn, Jan Boyke and Saalfrank, Peter}, title = {A multi-reference study of the byproduct formation for a ring-closed dithienylethene photoswitch}, series = {Physical chemistry, chemical physics : PCCP ; a journal of European Chemical Societies}, journal = {Physical chemistry, chemical physics : PCCP ; a journal of European Chemical Societies}, number = {17}, publisher = {The Royal Society of Chemistry}, address = {Cambridge}, issn = {1463-9076}, doi = {10.1039/C5CP00987A}, pages = {14088 -- 14095}, year = {2015}, abstract = {Photodriven molecular switches are sometimes hindered in their performance by forming byproducts which act as dead ends in sequences of switching cycles, leading to rapid fatigue effects. Understanding the reaction pathways to unwanted byproducts is a prerequisite for preventing them. This article presents a study of the photochemical reaction pathways for byproduct formation in the photochromic switch 1,2-bis-(3-thienyl)-ethene. Specifically, using single- and multi-reference methods the post-deexcitation reaction towards the byproduct in the electronic ground state S0 when starting from the S1-S0 conical intersection (CoIn), is considered in detail. We find an unusual low-energy pathway, which offers the possibility for the formation of a dyotropic byproduct. Several high-energy pathways can be excluded with high probability.}, language = {en} } @article{PrestelMoeller2015, author = {Prestel, Andreas and M{\"o}ller, Heiko Michael}, title = {Spatio-temporal control of cellular uptake achieved by photoswitchable cell-penetrating peptides}, series = {Chemical communications : ChemComm}, journal = {Chemical communications : ChemComm}, number = {52}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1364-548X}, doi = {10.1039/C5CC06848G}, pages = {701 -- 704}, year = {2015}, abstract = {The selective uptake of compounds into specific cells of interest is a major objective in cell biology and drug delivery. By incorporation of a novel, thermostable azobenzene moiety we generated peptides that can be switched optically between an inactive state and an active, cell-penetrating state with excellent spatio-temporal control.}, language = {en} } @article{KlierKumke2015, author = {Klier, Dennis Tobias and Kumke, Michael Uwe}, title = {Analysing the effect of the crystal structure on upconversion luminescence in Yb3+,Er3+-co-doped NaYF4 nanomaterials}, series = {Journal of materials chemistry C ; Materials for optical and electronic devices}, journal = {Journal of materials chemistry C ; Materials for optical and electronic devices}, number = {3}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {2050-7526}, doi = {10.1039/C5TC02218E}, pages = {11228 -- 11238}, year = {2015}, abstract = {NaYF4:Yb:Er nanoparticles (UCNP) were synthesized under mild experimental conditions to obtain a pure cubic lattice. Upon annealing at different temperatures up to Tan = 700 °C phase transitions to the hexagonal phase and back to the cubic phase were induced. The UCNP materials obtained for different Tan were characterized with respect to the lattice phase using standard XRD and Raman spectroscopy as well as steady state and time resolved upconversion luminescence. The standard techniques showed that for the annealing temperature range 300 °C < Tan < 600 °C the hexagonal lattice phase was dominant. For Tan < 300 °C hardly any change in the lattice phase could be deduced, whereas for Tan > 600 °C a back transfer to the α-phase was observed. Complementarily, the luminescence upconversion properties of the annealed UCNP materials were characterized in steady state and time resolved luminescence measurements. Distinct differences in the upconversion luminescence intensity, the spectral intensity distribution and the luminescence decay kinetics were found for the cubic and hexagonal lattice phases, respectively, corroborating the results of the standard analytical techniques used. In laser power dependent measurements of the upconversion luminescence intensity it was found that the green (G1, G2) and red (R) emission of Er3+ showed different effects of Tan on the number of required photons reflecting the differences in the population routes of different energy levels involved. Furthermore, the intensity ratio of Gfull/R is highly effected by the laser power only when the β-phase is present, whereas the G1/G2 intensity ratio is only slightly effected regardless of the crystal phase. Moreover, based on different upconversion luminescence kinetics characteristics of the cubic and hexagonal phase time-resolved area normalized emission spectra (TRANES) proved to be a very sensitive tool to monitor the phase transition between cubic and hexagonal phases. Based on the TRANES analysis it was possible to resolve the lattice phase transition in more detail for 200 °C < Tan < 300 °C, which was not possible with the standard techniques.}, language = {en} } @article{KlierKumke2015, author = {Klier, Dennis Tobias and Kumke, Michael Uwe}, title = {Upconversion NaYF4:Yb:Er nanoparticles co-doped with Gd3+ and Nd3+ for thermometry on the nanoscale}, series = {RSC Advances : an international journal to further the chemical sciences}, journal = {RSC Advances : an international journal to further the chemical sciences}, number = {5}, publisher = {RSC Publishing}, address = {London}, issn = {2046-2069}, doi = {10.1039/C5RA11502G}, pages = {67149 -- 67156}, year = {2015}, abstract = {In the present work, the upconversion luminescence properties of oleic acid capped NaYF4:Gd3+:Yb3+:Er3+ upconversion nanoparticles (UCNP) with pure β crystal phase and Nd3+ ions as an additional sensitizer were studied in the temperature range of 288 K < T < 328 K. The results of this study showed that the complex interplay of different mechanisms and effects, causing the special temperature behavior of the UCNP can be developed into thermometry on the nanoscale, e.g. to be applied in biological systems on a cellular level. The performance was improved by the use of Nd3+ as an additional dopant utilizing the cascade sensitization mechanism in tri-doped UCNP.}, language = {en} } @article{deCarvalhoMetzlerCherstvy2015, author = {de Carvalho, Sidney J. and Metzler, Ralf and Cherstvy, Andrey G.}, title = {Inverted critical adsorption of polyelectrolytes in confinement}, series = {Soft matter}, journal = {Soft matter}, number = {11}, publisher = {Royal Society of Chemistry}, address = {London}, issn = {1744-6848}, doi = {10.1039/C5SM00635J}, pages = {4430 -- 4443}, year = {2015}, abstract = {What are the fundamental laws for the adsorption of charged polymers onto oppositely charged surfaces, for convex, planar, and concave geometries? This question is at the heart of surface coating applications, various complex formation phenomena, as well as in the context of cellular and viral biophysics. It has been a long-standing challenge in theoretical polymer physics; for realistic systems the quantitative understanding is however often achievable only by computer simulations. In this study, we present the findings of such extensive Monte-Carlo in silico experiments for polymer-surface adsorption in confined domains. We study the inverted critical adsorption of finite-length polyelectrolytes in three fundamental geometries: planar slit, cylindrical pore, and spherical cavity. The scaling relations extracted from simulations for the critical surface charge density sc—defining the adsorption-desorption transition—are in excellent agreement with our analytical calculations based on the ground-state analysis of the Edwards equation. In particular, we confirm the magnitude and scaling of sc for the concave interfaces versus the Debye screening length 1/k and the extent of confinement a for these three interfaces for small ka values. For large ka the critical adsorption condition approaches the known planar limit. The transition between the two regimes takes place when the radius of surface curvature or half of the slit thickness a is of the order of 1/k. We also rationalize how sc(k) dependence gets modified for semi-flexible versus flexible chains under external confinement. We examine the implications of the chain length for critical adsorption—the effect often hard to tackle theoretically—putting an emphasis on polymers inside attractive spherical cavities. The applications of our findings to some biological systems are discussed, for instance the adsorption of nucleic acids onto the inner surfaces of cylindrical and spherical viral capsids.}, language = {en} } @article{HentrichJungingerBrunsetal.2015, author = {Hentrich, Doreen and Junginger, Mathias and Bruns, Michael and B{\"o}rner, Hans Gerhard and Brandt, Jessica and Brezesinski, Gerald and Taubert, Andreas}, title = {Interface-controlled calcium phosphate mineralization}, series = {CrystEngComm}, journal = {CrystEngComm}, number = {17}, publisher = {Royal Society of Chemistry}, address = {London}, issn = {1466-8033}, doi = {10.1039/C4CE02274B}, pages = {6901 -- 6913}, year = {2015}, abstract = {The phase behavior of an amphiphilic block copolymer based on a poly(aspartic acid) hydrophilic block and a poly(n-butyl acrylate) hydrophobic block was investigated at the air-water and air-buffer interface. The polymer forms stable monomolecular films on both subphases. At low pH, the isotherms exhibit a plateau. Compression-expansion experiments and infrared reflection absorption spectroscopy suggest that the plateau is likely due to the formation of polymer bi- or multilayers. At high pH the films remain intact upon compression and no multilayer formation is observed. Furthermore, the mineralization of calcium phosphate beneath the monolayer was studied at different pH. The pH of the subphase and thus the polymer charge strongly affects the phase behavior of the film and the mineral formation. After 4 h of mineralization at low pH, atomic force microscopy shows smooth mineral films with a low roughness. With increasing pH the mineral films become inhomogeneous and the roughness increases. Transmission electron microscopy confirms this: at low pH a few small but uniform particles form whereas particles grown at higher pH are larger and highly agglomerated. Energy-dispersive X-ray spectroscopy and X-ray photoelectron spectroscopy confirm the formation of calcium phosphate. The levels of mineralization are higher in samples grown at high pH.}, language = {en} } @phdthesis{Fengler2016, author = {Fengler, Anja}, title = {How the brain attunes to sentence processing}, series = {MPI series in human cognitive and brain sciences ; 174}, journal = {MPI series in human cognitive and brain sciences ; 174}, isbn = {978-3-941504-59-2}, pages = {XVI, 208}, year = {2016}, abstract = {While children acquire new words and simple sentence structures extremely fast and without much effort, the ability to process complex sentences develops rather late in life. Although the conjoint occurrence between brain-structural and brain-functional changes, the decrease of plasticity, and changes in cognitive abilities suggests a certain causality between these processes, concrete evidence for the relation between brain development, language processing, and language performance is rare. Therefore, the current dissertation investigates the tripartite relationship between behavior (in the form of language performance and cognitive maturation as prerequisite for language processing), brain structure (in the form of gray matter maturation), and brain function (in the form of brain activation evoked by complex sentence processing). Previous developmental studies indicate a missing increase of activation in accordance to sentence complexity (functional selectivity) in language-relevant brain areas in children. To determine the factors contributing to the functional development of language-relevant brain areas, different methodologies and data acquisition techniques were used to investigate the processing of center-embedded sentences in 5- and 6-year-old children, 7- and 8-year-old children, and adults. Behavioral results indicate that children between 5 and 8 years show difficulties in processing double embedded sentences and that their performance for these type of sentences is positively correlated with digit span. In 7- and 8-year-old children, it was found that especially the processing of long-distance relations between the initial phrase and its corresponding verb appears to be associated with the subject's verbal working memory capacity. In contrast, children's performance for double embedded sentences in the younger age group positively correlated with their performance in a standardized sentence comprehension test. This finding supports the hypothesis that processing difficulties in this age group may be mainly attributed to difficulties in processing case marking information. These findings are discussed with respect to current accounts of language and working memory development. A second study aimed at investigating the structural maturation of brain areas involved in sentence comprehension. To do this, whole-brain magnetic resonance images from 59 children between 5 and 8 years were collected and children's gray matter was analyzed by using voxel-based morphometry. Children's grammatical proficiency was assessed by a standardized sentence comprehension test. A confirmatory factory analysis corroborated a grammar-relevant and a verbal working memory-relevant factor underlying the measured performance. While children's ability to assign thematic roles is positively correlated with gray matter probability (GMP) in the left inferior temporal gyrus and the left inferior frontal gyrus, verbal working memory-related performance is positively correlated with GMP in the left parietal operculum extending into the posterior superior temporal gyrus. These areas have been previously shown to be differentially engaged in adults' complex sentence processing. Thus, the findings of the second study suggest a specific correspondence between children's GMP in language-relevant brain regions and differential cognitive abilities which underlie complex sentence comprehension. In a third study, functional brain activity during the processing of center-embedded sentences was investigated in three different age groups (5-6 years, 7-8 years, and adults). Although all age groups engage a qualitatively comparable network of the left pars opercularis (PO), the left inferior parietal lobe extending into the posterior superior temporal gyrus (IPL/pSTG), the supplementary motor area (SMA) and the cerebellum, functional selectivity of these regions was only observable in adults. However, functional activation of the language-related regions (PO and IPL/pSTG) predicted sentence comprehension performance for all age groups. To solve the question of the complex interplay between different maturational factors, a fourth study analyzed the predictive power of gray matter probability, verbal working memory capacity, and behavioral differences in performance for simple and complex sentence for the functional selectivity of each activated region. These analyses revealed that the establishment of the adult-like functional selectivity for complex sentences is predicted by a reduction of the left PO's gray matter probability across age groups while that of the IPL/pSTG is additionally predicted by verbal working memory capacity. Taken all findings together, the current thesis provides evidence that both structural brain maturation and verbal working memory expansion provide the basis for the emergence of functional selectivity in language-related brain regions leading to more efficient sentence processing during development.}, language = {en} } @phdthesis{Senft2015, author = {Senft, Christoph}, title = {Contemporary Indian writing in English between global fiction and transmodern historiography}, series = {Internationale Forschungen zur allgemeinen und vergleichenden Literaturwissenschaft ; 190}, journal = {Internationale Forschungen zur allgemeinen und vergleichenden Literaturwissenschaft ; 190}, publisher = {Rodopi}, address = {Leiden}, isbn = {978-90-04-30906-7}, pages = {239}, year = {2015}, abstract = {Christoph Senft provides a set of re-readings of contemporary Indian narrative texts as decolonial and pluralistic approaches to the past and thus offers a comprehensive overview of the subcontinent s literary landscape in the 21st century.}, language = {en} } @phdthesis{Liput2015, author = {Liput, Magdalena}, title = {Investigation of the biogenesis and use of ribosomes in Arabidopsis thaliana}, school = {Universit{\"a}t Potsdam}, pages = {158}, year = {2015}, language = {en} } @phdthesis{Wang2015, author = {Wang, Rong}, title = {Late quaternary climate and environmental variability inferred from terrigenous sediment records in China and the North Pacific/Bering Sea}, school = {Universit{\"a}t Potsdam}, pages = {91}, year = {2015}, language = {en} } @phdthesis{Festman2015, author = {Festman, Julia}, title = {Language processing : Multi-methodological studies with bi- and multilingual speakers}, school = {Universit{\"a}t Potsdam}, pages = {169}, year = {2015}, language = {en} } @article{JannReichard2001, author = {Jann, Werner and Reichard, Christoph}, title = {Best practice in central government modernization}, series = {RIEP : Revista internacional de estudos politicos}, volume = {2001}, journal = {RIEP : Revista internacional de estudos politicos}, number = {Special 9}, editor = {Wollmann, Hellmut}, publisher = {NUSEG}, address = {Rio de Janeiro}, issn = {1516-5973}, pages = {93 -- 111}, year = {2001}, language = {en} } @phdthesis{Fuenfgeld2015, author = {F{\"u}nfgeld, Maximilian}, title = {Compartmentation of adenine nucleotide metabolism}, school = {Universit{\"a}t Potsdam}, pages = {113}, year = {2015}, language = {en} } @phdthesis{Sauma2015, author = {Sauma, Natalia Zamora}, title = {Tsunami hazard analysis in Central America with emphasis on uncertainties}, school = {Universit{\"a}t Potsdam}, pages = {184}, year = {2015}, language = {en} } @phdthesis{Kormann2015, author = {Kormann, Christoph Martin}, title = {Regional climate change effects on hydroclimatic conditions in the Alpine region}, school = {Universit{\"a}t Potsdam}, pages = {129}, year = {2015}, language = {en} } @phdthesis{Zaccarella2015, author = {Zaccarella, Emiliano}, title = {Breaking down complexity}, series = {MPI series human cognitive and brain sciences ; 175}, journal = {MPI series human cognitive and brain sciences ; 175}, publisher = {Max-Planck-Institute}, address = {Leipzig}, isbn = {978-3-941504-60-8}, school = {Universit{\"a}t Potsdam}, pages = {217}, year = {2015}, abstract = {The unbounded expressive capacity of human language cannot boil down to an infinite list of sentences stored in a finite brain. Our linguistic knowledge is rather grounded around a rule-based universal syntactic computation—called Merge—which takes categorized units in input (e.g. this and ship), and generates structures by binding words recursively into more complex hierarchies of any length (e.g. this ship; this ship sinks…). Here we present data from different fMRI datasets probing the cortical implementation of this fundamental process. We first pushed complexity down to a three-word level, to explore how Merge creates minimally hierarchical phrases and sentences. We then moved to the most fundamental two-word level, to directly assess the universal invariant nature of Merge, when no additive mechanisms are involved. Our most general finding is that Merge as the basic syntactic operation is primarily performed by confined area, namely BA 44 in the IFG. Activity reduces to its most ventral-anterior portion at the most fundamental level, following fine-grained sub-anatomical parcellation proposed for the region. The deep frontal operculum/anterior-dorsal insula (FOP/adINS), a phylogenetically older and less specialized region, rather appears to support word-accumulation processing in which the categorical information of the word is first accessed based on its lexical status, and then maintained on hold before further processing takes place. The present data confirm the general notion of BA 44 being activated as a function of complex structural hierarchy, but they go beyond this view by proposing that structural sensitivity in BA 44 is already appreciated at the lowest levels of complexity during which minimal phrase-structures are build up, and syntactic Merge is assessed. Further, they call for a redefinition of BA 44 from multimodal area to a macro-region with internal localizable functional profiles}, language = {en} } @phdthesis{Sander2015, author = {Sander, Andreas Alexander Christoph}, title = {Radiatively driven winds of hot stars}, school = {Universit{\"a}t Potsdam}, pages = {153}, year = {2015}, language = {en} } @phdthesis{Bendadani2015, author = {Bendadani, Carolin}, title = {1-Methylpyren: Biotransformation und Gentoxizit{\"a}t}, school = {Universit{\"a}t Potsdam}, pages = {188}, year = {2015}, language = {en} } @phdthesis{Herde2015, author = {Herde, Antje}, title = {Individual differences and seasonal variation in behaviour}, school = {Universit{\"a}t Potsdam}, pages = {111}, year = {2015}, language = {en} } @phdthesis{Baumeier2015, author = {Baumeier, Christian}, title = {Dietary and Pharmacological Strategies for the Prevention and Treatment of Type 2 Diabetes in a Diabetes-Susceptible Mouse Model}, school = {Universit{\"a}t Potsdam}, pages = {148}, year = {2015}, language = {en} } @phdthesis{Arabi2015, author = {Arabi, Fayezeh}, title = {Functional characterization of Sulfur Deficiency Induced genes, SDI1 and SDI2, in Arabidopsis thaliana}, school = {Universit{\"a}t Potsdam}, pages = {97}, year = {2015}, language = {en} } @phdthesis{Prandi2015, author = {Prandi, Simone}, title = {Characterization of the expression and function of bitter taste receptor genes in gastrointestinal tissues}, school = {Universit{\"a}t Potsdam}, pages = {165}, year = {2015}, language = {en} } @phdthesis{Ramisch2015, author = {Ramisch, Arne}, title = {Lake system development on the northern Tibetan Plateau during the last ~ 12 ka}, school = {Universit{\"a}t Potsdam}, pages = {122}, year = {2015}, language = {en} } @phdthesis{Kabelitz2015, author = {Kabelitz, Tina}, title = {Natural and induced variation in the silencing of a Mutator-like transposon from Arabidopsis thaliana}, school = {Universit{\"a}t Potsdam}, pages = {188}, year = {2015}, language = {en} } @phdthesis{Zubaidah2010, author = {Zubaidah, Teti}, title = {Spatio-temporal characteristics of the geomagnetic field over the Lombok Island, the Lesser Sunda Islands region}, series = {Scientific Technical Report}, volume = {STR10}, journal = {Scientific Technical Report}, number = {07}, publisher = {Deutsches GeoForschungsZentrum GFZ}, address = {Potsdam}, doi = {10.2312/GFZ.b103-10079}, school = {Universit{\"a}t Potsdam}, pages = {xv, 117}, year = {2010}, abstract = {The Lombok Island is part of the Lesser Sunda Islands (LSI) region - Indonesia, situated along the Sunda-Banda Arcs transition. It lies between zones characterized by the highest intensity geomagnetic anomalies of this region, remarkable as one of the eight most important features provided on the 1st edition of World Digital Magnetic Anomaly Map. The seismicity of this region during the last years is high, while the geological and tectonic structures of this region are still not known in detail. Some local magnetic surveys have been conducted previously during 2004-2005. However, due to the lower accuracy of the used equipment and a limited number of stations, the qualities of the previous measurements are questionable for more interpretations. Thus a more detailed study to better characterize the geomagnetic anomaly -spatially and temporally- over this region and to deeply explore the related regional geology, tectonic and seismicity is needed. The intriguing geomagnetic anomalies over this island region vis-{\`a}-vis the socio-cultural situations lead to a study with a special aim to contribute to the assessment of the potential of natural hazards (earthquakes) as well as a new natural resource of energy (geothermal potential). This study is intended to discuss several crucial questions, including: i. The real values and the general pattern of magnetic anomalies over the island, as well as their relation to the regional one. ii. Any temporal changes of regional anomalies over the recent time. iii. The relationships between the anomalies and the geology and tectonic of this region, especially new insights that can be gained from the geomagnetic observations. iv. The relationships between the anomalies and the high seismicity of this region, especially some possible links between their variations to the earthquake occurrence. First, all available geomagnetic data of this region and results of the previous measurements are evaluated. The new geomagnetic surveys carried out in 2006 and 2007/2008 are then presented in detail, followed by the general description of data processing and data quality evaluation. The new results show the general pattern of contiguous negative-positive anomalies, revealing an active arc related subduction region. They agree with earlier results obtained by satellite, aeromagnetic, and marine platforms; and provide a much more detailed picture of the strong anomalies on this island. The temporal characteristics of regional anomalies show a decreasing strength of the dipolar structure, where decreasing of the field intensities is faster than the regional secular variations as defined by the global model (the 10th generation of IGRF). However, some exceptions (increasing of anomalies) have to be noted and further analyzed for several locations. Thereafter, simultaneous magnetic anomalies and gravity models are generated and interpreted in detail. Three profiles are investigated, providing new insights into the tectonics and geological evolution of the Lombok Island. Geological structure of this island can be divided as two main parts with different consecutive ages: an old part (from late Oligocene to late Miocene) in the South and a younger one (from Pliocene to Holocene) in the North. A new subduction in the back arc region (the Flores Thrust zone) is considered mature and active, showing a tendency of progressive subduction during 2005-2008. Geothermal potential in the northern part of this island can be mapped in more detail using these geomagnetic regional survey data. The earlier estimates of reservoir depth can be confirmed further to a depth of about 800 m. Evaluation of temporal changes of the anomalies gives some possible explanations related to the evolution of the back arc region, large stress accumulations over the LSI region, a specific electrical characteristic of the crust of the Lombok Island region, and a structural discontinuity over this island. Based on the results, several possible advanced studies involving geomagnetic data and anomaly investigations over the Lombok Island region can be suggested for the future: i. Monitoring the subduction activity of the back arc region (the Flores Thrust zone) and the accumulated stress over the LSI, that could contribute to middle term hazard assessment with a special attention to the earthquake occurrence in this region. Continuous geomagnetic field measurements from a geomagnetic observatory which can be established in the northern part of the Lombok Island and systematic measurements at several repeat stations can be useful in this regards. ii. Investigating the specific electrical characteristic (high conductivity) of the crust, that is probably related to some aquifer layers or metal mineralization. It needs other complementary geophysical methods, such as magnetotelluric (MT) or preferably DC resistivity measurements. iii. Determining the existence of an active structural fault over the Lombok Island, that could be related to long term hazard assessment over the LSI region. This needs an extension of geomagnetic investigations over the neighbouring islands (the Bali Island in the West and the Sumbawa Island in the East; probably also the Sumba and the Flores islands). This seems possible because the regional magnetic lineations might be used to delineate some structural discontinuities, based on the modelling of contrasts in crustal magnetizations.}, language = {en} } @article{BanerjeeStuekerSaalfrank2015, author = {Banerjee, Shiladitya and St{\"u}ker, Tony and Saalfrank, Peter}, title = {Vibrationally resolved optical spectra of modified diamondoids obtained from time-dependent correlation function methods}, series = {Physical chemistry, chemical physics : PCCP ; a journal of European chemical societies}, volume = {17}, journal = {Physical chemistry, chemical physics : PCCP ; a journal of European chemical societies}, number = {29}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1463-9084}, doi = {10.1039/C5CP02615F}, pages = {19656 -- 19669}, year = {2015}, abstract = {Optical properties of modified diamondoids have been studied theoretically using vibrationally resolved electronic absorption, emission and resonance Raman spectra. A time-dependent correlation function approach has been used for electronic two-state models, comprising a ground state (g) and a bright, excited state (e), the latter determined from linear-response, time-dependent density functional theory (TD-DFT). The harmonic and Condon approximations were adopted. In most cases origin shifts, frequency alteration and Duschinsky rotation in excited states were considered. For other cases where no excited state geometry optimization and normal mode analysis were possible or desired, a short-time approximation was used. The optical properties and spectra have been computed for (i) a set of recently synthesized sp2/sp3 hybrid species with C[double bond, length as m-dash]C double-bond connected saturated diamondoid subunits, (ii) functionalized (mostly by thiol or thione groups) diamondoids and (iii) urotropine and other C-substituted diamondoids. The ultimate goal is to tailor optical and electronic features of diamondoids by electronic blending, functionalization and substitution, based on a molecular-level understanding of the ongoing photophysics.}, language = {en} } @phdthesis{Olas2015, author = {Olas, Justyna Jadwiga}, title = {Nutrients regulate flowering time}, school = {Universit{\"a}t Potsdam}, pages = {190}, year = {2015}, language = {en} } @phdthesis{Menke2015, author = {Menke, Sebastian}, title = {Investigating the impact of intrinsic and extrinsic factors on gut bacterial communities in Namibian wildlife species using a large-scale next-generation sequencing approach}, school = {Universit{\"a}t Potsdam}, pages = {109}, year = {2015}, language = {en} } @article{LaubrockKliegl2015, author = {Laubrock, Jochen and Kliegl, Reinhold}, title = {The eye-voice span during reading aloud}, series = {Frontiers in psychology}, volume = {6}, journal = {Frontiers in psychology}, number = {1432}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2015.01432}, year = {2015}, abstract = {Although eye movements during reading are modulated by cognitive processing demands, they also reflect visual sampling of the input, and possibly preparation of output for speech or the inner voice. By simultaneously recording eye movements and the voice during reading aloud, we obtained an output measure that constrains the length of time spent on cognitive processing. Here we investigate the dynamics of the eye-voice span (EVS), the distance between eye and voice. We show that the EVS is regulated immediately during fixation of a word by either increasing fixation duration or programming a regressive eye movement against the reading direction. EVS size at the beginning of a fixation was positively correlated with the likelihood of regressions and refixations. Regression probability was further increased if the EVS was still large at the end of a fixation: if adjustment of fixation duration did not sufficiently reduce the EVS during a fixation, then a regression rather than a refixation followed with high probability. We further show that the EVS can help understand cognitive influences on fixation duration during reading: in mixed model analyses, the EVS was a stronger predictor of fixation durations than either word frequency or word length. The EVS modulated the influence of several other predictors on single fixation durations (SFDs). For example, word-N frequency effects were larger with a large EVS, especially when word N-1 frequency was low. Finally, a comparison of SFDs during oral and silent reading showed that reading is governed by similar principles in both reading modes, although EVS maintenance and articulatory processing also cause some differences. In summary, the EVS is regulated by adjusting fixation duration and/or by programming a regressive eye movement when the EVS gets too large. Overall, the EVS appears to be directly related to updating of the working memory buffer during reading.}, language = {en} } @article{LamannaKirschbaumWauricketal.2015, author = {Lamanna, Francesco and Kirschbaum, Frank and Waurick, Isabelle and Dieterich, Christoph and Tiedemann, Ralph}, title = {Cross-tissue and cross-species analysis of gene expression in skeletal muscle and electric organ of African weakly-electric fish (Teleostei; Mormyridae)}, series = {BMC Genomics}, volume = {16}, journal = {BMC Genomics}, number = {668}, publisher = {Biomed Central}, address = {London}, issn = {1471-2164}, doi = {10.1186/s12864-015-1858-9}, year = {2015}, abstract = {Background African weakly-electric fishes of the family Mormyridae are able to produce and perceive weak electric signals (typically less than one volt in amplitude) owing to the presence of a specialized, muscle-derived electric organ (EO) in their tail region. Such electric signals, also known as Electric Organ Discharges (EODs), are used for objects/prey localization, for the identification of conspecifics, and in social and reproductive behaviour. This feature might have promoted the adaptive radiation of this family by acting as an effective pre-zygotic isolation mechanism. Despite the physiological and evolutionary importance of this trait, the investigation of the genetic basis of its function and modification has so far remained limited. In this study, we aim at: i) identifying constitutive differences in terms of gene expression between electric organ and skeletal muscle (SM) in two mormyrid species of the genus Campylomormyrus: C. compressirostris and C. tshokwe, and ii) exploring cross-specific patterns of gene expression within the two tissues among C. compressirostris, C. tshokwe, and the outgroup species Gnathonemus petersii. Results Twelve paired-end (100 bp) strand-specific RNA-seq Illumina libraries were sequenced, producing circa 330 M quality-filtered short read pairs. The obtained reads were assembled de novo into four reference transcriptomes. In silico cross-tissue DE-analysis allowed us to identify 271 shared differentially expressed genes between EO and SM in C. compressirostris and C.tshokwe. Many of these genes correspond to myogenic factors, ion channels and pumps, and genes involved in several metabolic pathways. Cross-species analysis has revealed that the electric organ transcriptome is more variable in terms of gene expression levels across species than the skeletal muscle transcriptome. Conclusions The data obtained indicate that: i) the loss of contractile activity and the decoupling of the excitation-contraction processes are reflected by the down-regulation of the corresponding genes in the electric organ's transcriptome; ii) the metabolic activity of the EO might be specialized towards the production and turn-over of membrane structures; iii) several ion channels are highly expressed in the EO in order to increase excitability; iv) several myogenic factors might be down-regulated by transcription repressors in the EO.}, language = {en} } @phdthesis{Ambrogi2015, author = {Ambrogi, Martina}, title = {Application of Poly(Ionic Liquid)s for the synthesis of functional carbons}, school = {Universit{\"a}t Potsdam}, pages = {125}, year = {2015}, language = {en} } @article{PulkkinenMetzler2015, author = {Pulkkinen, Otto and Metzler, Ralf}, title = {Variance-corrected Michaelis-Menten equation predicts transient rates of single-enzyme reactions and response times in bacterial gene-regulation}, series = {Scientific reports}, journal = {Scientific reports}, number = {5}, publisher = {Nature Publishing Group}, address = {London}, issn = {2045-2322}, doi = {10.1038/srep17820}, year = {2015}, abstract = {Many chemical reactions in biological cells occur at very low concentrations of constituent molecules. Thus, transcriptional gene-regulation is often controlled by poorly expressed transcription-factors, such as E.coli lac repressor with few tens of copies. Here we study the effects of inherent concentration fluctuations of substrate-molecules on the seminal Michaelis-Menten scheme of biochemical reactions. We present a universal correction to the Michaelis-Menten equation for the reaction-rates. The relevance and validity of this correction for enzymatic reactions and intracellular gene-regulation is demonstrated. Our analytical theory and simulation results confirm that the proposed variance-corrected Michaelis-Menten equation predicts the rate of reactions with remarkable accuracy even in the presence of large non-equilibrium concentration fluctuations. The major advantage of our approach is that it involves only the mean and variance of the substrate-molecule concentration. Our theory is therefore accessible to experiments and not specific to the exact source of the concentration fluctuations.}, language = {en} }