@phdthesis{Zou2007,
  author    = {Zou, Yong},
  title     = {Exploring recurrences in quasiperiodic systems},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-16497},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {In this work, some new results to exploit the recurrence properties of quasiperiodic dynamical systems are presented by means of a two dimensional visualization technique, Recurrence Plots(RPs). Quasiperiodicity is the simplest form of dynamics exhibiting nontrivial recurrences, which are common in many nonlinear systems. The concept of recurrence was introduced to study the restricted three body problem and it is very useful for the characterization of nonlinear systems. I have analyzed in detail the recurrence patterns of systems with quasiperiodic dynamics both analytically and numerically. Based on a theoretical analysis, I have proposed a new procedure to distinguish quasiperiodic dynamics from chaos. This algorithm is particular useful in the analysis of short time series. Furthermore, this approach demonstrates to be efficient in recognizing regular and chaotic trajectories of dynamical systems with mixed phase space. Regarding the application to real situations, I have shown the capability and validity of this method by analyzing time series from fluid experiments.},
  language  = {en}
}
@article{ZhangHenkel2007,
  author    = {Zhang, Bo and Henkel, Carsten},
  title     = {Magnetic noise around metallic microstructures},
  issn      = {0021-8979},
  doi       = {10.1063/1.2800174},
  year      = {2007},
  abstract  = {We compute the local spectrum of the magnetic field near a metallic microstructure at finite temperature. Our main focus is on deviations from a plane-layered geometry for which we review the main properties. Arbitrary geometries are handled with the help of numerical calculations based on surface integral equations. The magnetic noise shows a significant polarization anisotropy above flat wires with finite lateral width, in stark contrast to an infinitely wide wire. Within the limits of a two-dimensional setting, our results provide accurate estimates for loss and dephasing rates in so-called `atom chip traps' based on metallic wires. A simple approximation based on the incoherent summation of local current elements gives qualitative agreement with the numerics, but fails to describe current correlations among neighboring objects.},
  language  = {en}
}
@phdthesis{Zemanova2007,
  author    = {Zemanov{\´a}, Lucia},
  title     = {Structure-function relationship in hierarchical model of brain networks},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-18400},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {The mammalian brain is, with its numerous neural elements and structured complex connectivity, one of the most complex systems in nature. Recently, large-scale corticocortical connectivities, both structural and functional, have received a great deal of research attention, especially using the approach of complex networks. Here, we try to shed some light on the relationship between structural and functional connectivities by studying synchronization dynamics in a realistic anatomical network of cat cortical connectivity. We model the cortical areas by a subnetwork of interacting excitable neurons (multilevel model) and by a neural mass model (population model). With weak couplings, the multilevel model displays biologically plausible dynamics and the synchronization patterns reveal a hierarchical cluster organization in the network structure. We can identify a group of brain areas involved in multifunctional tasks by comparing the dynamical clusters to the topological communities of the network. With strong couplings of multilevel model and by using neural mass model, the dynamics are characterized by well-defined oscillations. The synchronization patterns are mainly determined by the node intensity (total input strengths of a node); the detailed network topology is of secondary importance. The biologically improved multilevel model exhibits similar dynamical patterns in the two regimes. Thus, the study of synchronization in a multilevel complex network model of cortex can provide insights into the relationship between network topology and functional organization of complex brain networks.},
  language  = {en}
}
@phdthesis{Worseck2007,
  author    = {Worseck, G{\´a}bor},
  title     = {The transverse proximity effect in quasar spectra},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-18738},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {The intergalactic medium is kept highly photoionised by the intergalactic UV background radiation field generated by the overall population of quasars and galaxies. In the vicinity of sources of UV photons, such as luminous high-redshift quasars, the UV radiation field is enhanced due to the local source contribution. The higher degree of ionisation is visible as a reduced line density or generally as a decreased level of absorption in the Lyman alpha forest of neutral hydrogen. This so-called proximity effect has been detected with high statistical significance towards luminous quasars. If quasars radiate rather isotropically, background quasar sightlines located near foreground quasars should show a region of decreased Lyman alpha absorption close to the foreground quasar. Despite considerable effort, such a transverse proximity effect has only been detected in a few cases. So far, studies of the transverse proximity effect were mostly limited by the small number of suitable projected pairs or groups of high-redshift quasars. With the aim to substantially increase the number of quasar groups in the vicinity of bright quasars we conduct a targeted survey for faint quasars around 18 well-studied quasars at employing slitless spectroscopy. Among the reduced and calibrated slitless spectra of 29000 objects on a total area of 4.39 square degrees we discover in total 169 previously unknown quasar candidates based on their prominent emission lines. 81 potential z>1.7 quasars are selected for confirmation by slit spectroscopy at the Very Large Telescope (VLT). We are able to confirm 80 of these. 64 of the newly discovered quasars reside at z>1.7. The high success rate of the follow-up observations implies that the majority of the remaining candidates are quasars as well. In 16 of these groups we search for a transverse proximity effect as a systematic underdensity in the HI Lyman alpha absorption. We employ a novel technique to characterise the random absorption fluctuations in the forest in order to estimate the significance of the transverse proximity effect. Neither low-resolution spectra nor high-resolution spectra of background quasars of our groups present evidence for a transverse proximity effect. However, via Monte Carlo simulations the effect should be detectable only at the 1-2sigma level near three of the foreground quasars. Thus, we cannot distinguish between the presence or absence of a weak signature of the transverse proximity effect. The systematic effects of quasar variability, quasar anisotopy and intrinsic overdensities near quasars likely explain the apparent lack of the transverse proximity effect. Even in absence of the systematic effects, we show that a statistically significant detection of the transverse proximity effect requires at least 5 medium-resolution quasar spectra of background quasars near foreground quasars whose UV flux exceeds the UV background by a factor 3. Therefore, statistical studies of the transverse proximity effect require large numbers of suitable pairs. Two sightlines towards the central quasars of our survey fields show intergalactic HeII Lyman alpha absorption. A comparison of the HeII absorption to the corresponding HI absorption yields an estimate of the spectral shape of the intergalactic UV radiation field, typically parameterised by the HeII/HI column density ratio eta. We analyse the fluctuating UV spectral shape on both lines of sight and correlate it with seven foreground quasars. On the line of sight towards Q0302-003 we find a harder radiation field near 4 foreground quasars. In the direct vicinity of the quasars eta is consistent with values of 25-100, whereas at large distances from the quasars eta>200 is required. The second line of sight towards HE2347-4342 probes lower redshifts where eta is directly measurable in the resolved HeII forest. Again we find that the radiation field near the 3 foreground quasars is significantly harder than in general. While eta still shows large fluctuations near the quasars, probably due to radiative transfer, the radiation field is on average harder near the quasars than far away from them. We interpret these discoveries as the first detections of the transverse proximity effect as a local hardness fluctuation in the UV spectral shape. No significant HI proximity effect is predicted for the 7 foreground quasars. In fact, the HI absorption near the quasars is close to or slightly above the average, suggesting that the weak signature of the transverse proximity effect is masked by intrinsic overdensities. However, we show that the UV spectral shape traces the transverse proximity effect even in overdense regions or at large distances. Therefore, the spectral hardness is a sensitive physical measure of the transverse proximity effect that is able to break the density degeneracy affecting the traditional searches.},
  language  = {en}
}
@article{WirgesWegenerVoroninaetal.2007,
  author    = {Wirges, Werner and Wegener, Michael and Voronina, Olena and Zirkel, Larissa and Gerhard, Reimund},
  title     = {Optimized preparation of elastically soft, highly piezoelectric, cellular ferroelectrets from nonvoided poly(ethylene terephthalate) films},
  doi       = {10.1002/adfm.200600162},
  year      = {2007},
  abstract  = {Electrically charged cellular polymer films can exhibit very high piezoelectric activity and are therefore more and more often employed in advanced electromechanical and electro-acoustical transducers. In this paper, we report an optimized sequence of steps for preparing such ferroelectrets from commercial nonvoided ploy(ethylene terephthalate) (PETP) films by means of foaming with CO2 biaxial mechanical stretching, controlled void inflation, and bipolar electric charging. The nonvoid PETP films foamed with supercritical CO2 at a suitably high pressure and subsequently annealed for stabilization. The cellular foam structure was further optimized by means of well controlled biaxial stretching in a commercial stretcher and sometimes subsequent inflamation in a pressure chamber. Bipolar electric charging of the internal voids was achieved through the application of high electric fields in an SF0 atmosphere. The new optimized PETP ferroelectric exhibit quite large piezoelectric coefficients up to almost 500 pCN(-1), for which unusually low elastic stiffness of only around 0.3 MPa are essential. The PETP foam ferroelectrics posses unclamped thickenss-extension resonance frequences between approximately 120 and 250 kHz, and are thus highly suitable for several established as well as novel ultrasonic-transductant applications.},
  language  = {en}
}
@phdthesis{Weikl2007,
  author    = {Weikl, Thomas R.},
  title     = {Transition states and loop-closure principles in protein folding},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-26975},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {Proteins are chain molecules built from amino acids. The precise sequence of the 20 different types of amino acids in a protein chain defines into which structure a protein folds, and the three-dimensional structure in turn specifies the biological function of the protein. The reliable folding of proteins is a prerequisite for their robust function. Misfolding can lead to protein aggregates that cause severe diseases, such as Alzheimer's, Parkinson's, or the variant Creutzfeldt-Jakob disease. Small single-domain proteins often fold without experimentally detectable metastable intermediate states. The folding dynamics of these proteins is thought to be governed by a single transition-state barrier between the unfolded and the folded state. The transition state is highly instable and cannot be observed directly. However, mutations in which a single amino acid of the protein is substituted by another one can provide indirect access. The mutations slightly change the transition-state barrier and, thus, the folding and unfolding times of the protein. The central question is how to reconstruct the transition state from the observed changes in folding times. In this habilitation thesis, a novel method to extract structural information on transition states from mutational data is presented. The method is based on (i) the cooperativity of structural elements such as alpha-helices and beta-hairpins, and (ii) on splitting up mutation-induced free-energy changes into components for these elements. By fitting few parameters, the method reveals the degree of structure formation of alpha-helices and beta-hairpins in the transition state. In addition, it is shown in this thesis that the folding routes of small single-domain proteins are dominated by loop-closure dependencies between the structural elements.},
  language  = {en}
}
@article{WegenerWirgesPaajanenetal.2007,
  author    = {Wegener, Michael and Wirges, Werner and Paajanen, Mika and Gerhard, Reimund},
  title     = {Charging behaviour and thermal stability of porous and non-porous polytetrafluoroethylene (PTFE) electrets},
  isbn      = {978-1-4244-1482-6},
  year      = {2007},
  language  = {en}
}
@inproceedings{VotrubaFeldmeierKubatetal.2007,
  author    = {Votruba, V. and Feldmeier, Achim and Kub{\´a}t, Jiř{\´i} and R{\"a}tzel, D.},
  title     = {Multicomponent stellar wind of hot stars},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-17677},
  year      = {2007},
  abstract  = {We developed a time-dependent multicomponent hydrodynamical code for simulation of the stellar wind from hot stars and applied it to stars with high and low density winds.},
  language  = {en}
}
@phdthesis{Voronina2007,
  author    = {Voronina, Olena},
  title     = {Structure-property relations in polymer ferroelectrets},
  address   = {Potsdam},
  pages     = {IV, 145 S., IV : graph. Darst.},
  year      = {2007},
  language  = {en}
}
@phdthesis{Toenjes2007,
  author    = {T{\"o}njes, Ralf},
  title     = {Pattern formation through synchronization in systems of nonidentical autonomous oscillators},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-15973},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {This work is concerned with the spatio-temporal structures that emerge when non-identical, diffusively coupled oscillators synchronize. It contains analytical results and their confirmation through extensive computer simulations. We use the Kuramoto model which reduces general oscillatory systems to phase dynamics. The symmetry of the coupling plays an important role for the formation of patterns. We have studied the ordering influence of an asymmetry (non-isochronicity) in the phase coupling function on the phase profile in synchronization and the intricate interplay between this asymmetry and the frequency heterogeneity in the system. The thesis is divided into three main parts. Chapter 2 and 3 introduce the basic model of Kuramoto and conditions for stable synchronization. In Chapter 4 we characterize the phase profiles in synchronization for various special cases and in an exponential approximation of the phase coupling function, which allows for an analytical treatment. Finally, in the third part (Chapter 5) we study the influence of non-isochronicity on the synchronization frequency in continuous, reaction diffusion systems and discrete networks of oscillators.},
  language  = {en}
}
@inproceedings{TodtHamannGraefener2007,
  author    = {Todt, Helge Tobias and Hamann, Wolf-Rainer and Gr{\"a}fener, G.},
  title     = {Clumping in [WC]-type Central Stars from electron-scattering line wings},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-17711},
  year      = {2007},
  abstract  = {While there is strong evidence for clumping in the winds of massive hot stars, very little is known about clumping in the winds from Central Stars. We have checked [WC]-type CSPN winds for clumping by inspecting the electron-scattering line wings. At least for three stars we found indications for wind inhomogeneities.},
  language  = {en}
}
@article{TinoCacciapuotiBongsetal.2007,
  author    = {Tino, G. M. and Cacciapuoti, L. and Bongs, K. and Bord{\´e}, Ch. J. and Bouyer, P. and Dittus, H. and Ertmer, W. and G{\"o}rlitz, A. and Inguscio, M. and Landragin, A. and Lemonde, P. and L{\"a}mmerzahl, C. and Peters, A. and Rasel, E. and Reichel, J. and Salomon, C. and Schiller, S. and Schleich, W. and Sengstock, K. and Sterr, U. and Wilkens, Martin},
  title     = {Atom interferometers and optical atomic clocks : new quantum sensors for fundamental physics experiments in space},
  year      = {2007},
  abstract  = {We present projects for future space missions using new quantum devices based on ultracold atoms. They will enable fundamental physics experiments testing quantum physics, physics beyond the standard model of fundamental particles and interactions, special relativity, gravitation and general relativity.},
  language  = {en}
}
@phdthesis{Szklarski2007,
  author    = {Szklarski, Jacek T.},
  title     = {Helical magnetorotational instability in MHD Taylor-Couette flow},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-16002},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {Magnetorotational instability (MRI) is one of the most important and most common instabilities in astrophysics. Today it is widely accepted that it serves as a major source of turbulent viscosity in accretion disks, the most energy efficient objects in the universe. The importance of the MRI for astrophysics has been realized only in recent fifteen years. However, originally it was discovered much earlier, in 1959, in a very different context. Theoretical flow of a conducting liquid confined between differentially rotating cylinders in the presence of an external magnetic field was analyzed. The central conclusion is that the additional magnetic field parallel to the axis of rotation can destabilize otherwise stable flow. Theory of non-magnetized fluid motion between rotating cylinders has much longer history, though. It has been studied already in 1888 and today such setup is usually referred as a Taylor-Couette flow. To prove experimentally the existence of MRI in a magnetized Taylor-Couette flow is a demanding task and different MHD groups around the world try to achieve it. The main problem lies in the fact that laboratory liquid metals which are used in such experiments are characterized by small magnetic Prandtl number. Consequently rotation rates of the cylinders must be extremely large and vast amount of technical problems emerge. One of the most important difficulties is an influence of plates enclosing the cylinders in any experiment. For fast rotation the plates tend to dominate the whole flow and the MRI can not be observed. In this thesis we discuss a special helical configuration of the applied magnetic field which allows the critical rotation rates to be much smaller. If only the axial magnetic field is present, the cylinders must rotate with angular velocities corresponding to Reynolds numbers of order Re ≈ 10^6. With the helical field this number is dramatically reduced to Re ≈ 10^3. The azimuthal component of the magnetic field can be easily generated by letting an electric current through the axis of rotation, In a Taylor-Couette flow the (primary) instability manifests itself as Taylor vortices. The specific geometry of the helical magnetic field leads to a traveling wave solution and the vortices are drifting in a direction determined by rotation and the magnetic field. In an idealized study for infinitely long cylinders this is not a problem. However, if the cylinders have finite length and are bounded vertically by the plates the situation is different. In this dissertation it is shown, with use of numerical methods, that the traveling wave solution also exists for MHD Taylor-Couette flow at finite aspect ratio H/D, H being height of the cylinders, D width of the gap between them. The nonlinear simulations provide amplitudes of fluid velocity which are helpful in designing an experiment. Although the plates disturb the flow, parameters like the drift velocity indicate that the helical MRI operates in this case. The idea of the helical MRI was implemented in a very recent experiment PROMISE. The results provided, for the first time, an evidence that the (helical) MRI indeed exists. Nevertheless, the influence of the vertical endplates was evident and the experiment can be, in principle, improved. Exemplary methods of reduction of the end-effect are here proposed. Near the vertical boundaries develops an Ekman-Hartmann layer. Study of this layer for the MHD Taylor-Couette system as well as its impact on the global flow properties is presented. It is shown that the plates, especially if they are conducting, can disturb the flow far more then previously thought also for relatively slow rotation rates.},
  language  = {en}
}
@phdthesis{Sule2007,
  author    = {Sule, Aniket},
  title     = {Formation and stability of the solar tachocline in MHD simulations},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-14612},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {The solar tachocline is a thin transition layer between the solar radiative zone rotating uniformly and the solar convection zone, which has a mainly latitudinal differential rotation profile. This layer has a thickness of less than \$0.05R_{\sun}\$ and is subject to extreme radial as well as latitudinal shears. Helioseismological estimates put this layer at roughly \$0.7R_{\sun}\$. The tachocline mostly resides in the sub-adiabatic, non-turbulent radiative interior, except for a small overlap with the convection zone on the top. Many proposed dynamo mechanisms involve strong toroidal magnetic fields in this transition region. The exact mechanisms behind the formation of such a thin layer is still disputed. A very plausible mechanism is the one involving a weak, relic poloidal magnetic field trapped inside the radiative zone, which is responsible for expelling differential rotation outwards. This was first proposed by \citet{RK97}. The present work develops this idea with numerical simulations including additional effects like meridional circulation. It is shown that a relic field of 1~Gauss or smaller would be sufficient to explain the observed thickness of the tachocline. The stability of the solar tachocline is addressed as the next part of the problem. It is shown that the tachocline is stable up to a differential rotation of 52\\% in the absence of magnetic fields. This is a new finding as compared to the earlier two dimensional models which estimated the solar differential rotation (about 28\\%) to be marginally stable or even unstable. The changed stability limit is attributed to the changed stability criterion of the 3-dimensional model which also involves radial gradients of the angular velocity. In the presence of toroidal magnetic field belts, the lowest non-axisymmetric mode is shown to be the most unstable one for the radiative part of the tachocline. It is estimated that the tachocline would become unstable for toroidal fields exceeding about 100~Gauss. With both formation and stability questions satisfactorily addressed, this work presents the most comprehensive analysis of the physical processes in the solar tachocline to date.},
  language  = {en}
}
@phdthesis{Silmy2007,
  author    = {Silmy, Kamel},
  title     = {Micro-jet plasma chemical vapor deposition},
  address   = {Potsdam},
  pages     = {xviii, 96 S. : Ill., graph. Darst.},
  year      = {2007},
  language  = {en}
}
@article{SeehaferFuhrmannValorietal.2007,
  author    = {Seehafer, Norbert and Fuhrmann, M. and Valori, Gherardo and Kliem, Bernhard},
  title     = {Force-free magnetic fields in the solar atmosphere},
  year      = {2007},
  language  = {en}
}
@phdthesis{Rust2007,
  author    = {Rust, Henning},
  title     = {Detection of long-range dependence : applications in climatology and hydrology},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-13347},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {It is desirable to reduce the potential threats that result from the variability of nature, such as droughts or heat waves that lead to food shortage, or the other extreme, floods that lead to severe damage. To prevent such catastrophic events, it is necessary to understand, and to be capable of characterising, nature's variability. Typically one aims to describe the underlying dynamics of geophysical records with differential equations. There are, however, situations where this does not support the objectives, or is not feasible, e.g., when little is known about the system, or it is too complex for the model parameters to be identified. In such situations it is beneficial to regard certain influences as random, and describe them with stochastic processes. In this thesis I focus on such a description with linear stochastic processes of the FARIMA type and concentrate on the detection of long-range dependence. Long-range dependent processes show an algebraic (i.e. slow) decay of the autocorrelation function. Detection of the latter is important with respect to, e.g. trend tests and uncertainty analysis. Aiming to provide a reliable and powerful strategy for the detection of long-range dependence, I suggest a way of addressing the problem which is somewhat different from standard approaches. Commonly used methods are based either on investigating the asymptotic behaviour (e.g., log-periodogram regression), or on finding a suitable potentially long-range dependent model (e.g., FARIMA[p,d,q]) and test the fractional difference parameter d for compatibility with zero. Here, I suggest to rephrase the problem as a model selection task, i.e.comparing the most suitable long-range dependent and the most suitable short-range dependent model. Approaching the task this way requires a) a suitable class of long-range and short-range dependent models along with suitable means for parameter estimation and b) a reliable model selection strategy, capable of discriminating also non-nested models. With the flexible FARIMA model class together with the Whittle estimator the first requirement is fulfilled. Standard model selection strategies, e.g., the likelihood-ratio test, is for a comparison of non-nested models frequently not powerful enough. Thus, I suggest to extend this strategy with a simulation based model selection approach suitable for such a direct comparison. The approach follows the procedure of a statistical test, with the likelihood-ratio as the test statistic. Its distribution is obtained via simulations using the two models under consideration. For two simple models and different parameter values, I investigate the reliability of p-value and power estimates obtained from the simulated distributions. The result turned out to be dependent on the model parameters. However, in many cases the estimates allow an adequate model selection to be established. An important feature of this approach is that it immediately reveals the ability or inability to discriminate between the two models under consideration. Two applications, a trend detection problem in temperature records and an uncertainty analysis for flood return level estimation, accentuate the importance of having reliable methods at hand for the detection of long-range dependence. In the case of trend detection, falsely concluding long-range dependence implies an underestimation of a trend and possibly leads to a delay of measures needed to take in order to counteract the trend. Ignoring long-range dependence, although present, leads to an underestimation of confidence intervals and thus to an unjustified belief in safety, as it is the case for the return level uncertainty analysis. A reliable detection of long-range dependence is thus highly relevant in practical applications. Examples related to extreme value analysis are not limited to hydrological applications. The increased uncertainty of return level estimates is a potentially problem for all records from autocorrelated processes, an interesting examples in this respect is the assessment of the maximum strength of wind gusts, which is important for designing wind turbines. The detection of long-range dependence is also a relevant problem in the exploration of financial market volatility. With rephrasing the detection problem as a model selection task and suggesting refined methods for model comparison, this thesis contributes to the discussion on and development of methods for the detection of long-range dependence.},
  language  = {en}
}
@phdthesis{Ruffoni2007,
  author    = {Ruffoni, Davide},
  title     = {Modeling of material and architectural quality of trabecular bone},
  address   = {Potsdam},
  pages     = {VI, 127 S. Ill., graph. Darst.},
  year      = {2007},
  language  = {en}
}
@phdthesis{Richter2007,
  author    = {Richter, Andreas},
  title     = {Structure formation and fractionation in systems of colloidal rods},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-13090},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {Nowadays, colloidal rods can be synthesized in large amounts. The rods are typically cylindrically and their length ranges from several nanometers to a few micrometers. In solution, systems of colloidal rodlike molecules or aggregates can form liquid-crystalline phases with long-range orientational and spatial order. In the present work, we investigate structure formation and fractionation in systems of rodlike colloids with the help of Monte Carlo simulations in the NPT ensemble. Repulsive interactions can successfully be mimicked by the hard rod model, which has been studied extensively in the past. In many cases, attractive interactions like van der Waals or depletion forces cannot be neglected, however. In the first part of this work, the phase behavior of monodisperse attractive rods is characterized for different interaction strengths. Phase diagrams as a function of rod length and pressure are presented. Most systems of synthesized mesoscopic rods have a polydisperse length distribution as a consequence of the longitudinal growth process of the rods. For many technical and research applications, a rather small polydispersity is desired in order to have well defined material properties. The polydispersity can be reduced by a spatial demixing (fractionation) of long and short rods. Fractionation and structure formation is studied in a tridisperse and a polydisperse bulk suspension of rods. We observe that the resulting structures depend distinctly on the interaction strength. The fractionation in the system is strongly enhanced with increasing interaction strength. Suspensions are typically confined in a container. We also examine the influence of adjacent substrates in systems of tridisperse and polydisperse rod suspensions. Three different substrate types are studied in detail: a planar wall, a corrugated substrate, and a substrate with rectangular cavities. We analyze the fluid structure close to the substrate and substrate controlled fractionation. The spatial arrangement of long and short rods in front of the substrate depends sensitively on the substrate structure and the pressure. Rods with a predefined length are segregated at substrates with rectangular cavities.},
  language  = {en}
}
@article{ReddyPuranikGuptaetal.2007,
  author    = {Reddy, Raghavendra V. and Puranik, Shikha and Gupta, Ajay and Leitenberger, Wolfram},
  title     = {Study of FePt films prepared by reactive sputtering},
  year      = {2007},
  language  = {en}
}
@article{QiuMellingerWirgesetal.2007,
  author    = {Qiu, Xunlin and Mellinger, Axel and Wirges, Werner and Gerhard, Reimund},
  title     = {Spectroscopic study of dielectric barrier discharges in cellular polypropylene ferroelectrets},
  doi       = {10.1063/1.2786597},
  year      = {2007},
  abstract  = {The transient light emission from the dielectric barrier discharges (DBDs) in cellular polypropylene ferroelectrets subjected to high electric poling fields was spectroscopically measured. The spectrum shows strong emission from the second positive system of molecular nitrogen, N-2(C (3)Pi(u))-> N-2(B (3)Pi(g)), and the first negative system of N-2(+), N-2(+)(B (2)Sigma(+)(u))-> N-2(+)(X (2)Sigma(+)(g)), consistent with a DBD in air. When a dc voltage is applied stepwise to the ferroelectret film, light emission starts above a threshold, coinciding with the threshold voltage in obtaining piezoelectricity. From selected vibronic band strength ratios, the electric field in the discharge was determined and found to agree with Townsend breakdown.},
  language  = {en}
}
@article{QiuMellingerWirgesetal.2007,
  author    = {Qiu, Xunlin and Mellinger, Axel and Wirges, Werner and Gerhard, Reimund},
  title     = {Dielectric barrier discharges during the generation of ferroelectrets : optical spectroscopy for process monitoring},
  isbn      = {978-1-4244-1482-6},
  year      = {2007},
  language  = {en}
}
@article{QiuMellingerWegeneretal.2007,
  author    = {Qiu, Xunlin and Mellinger, Axel and Wegener, Michael and Wirges, Werner and Gerhard, Reimund},
  title     = {Barrier discharges in cellular polypropylene ferroelectrets : how do they influence the electromechanical properties?},
  year      = {2007},
  language  = {en}
}
@phdthesis{PereiradaSilva2007,
  author    = {Pereira da Silva, Tiago},
  title     = {Synchronization in active networks},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-14347},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {In nature one commonly finds interacting complex oscillators which by the coupling scheme form small and large networks, e.g. neural networks. Surprisingly, the oscillators can synchronize, still preserving the complex behavior. Synchronization is a fundamental phenomenon in coupled nonlinear oscillators. Synchronization can be enhanced at different levels, that is, the constraints on which the synchronization appears. Those can be in the trajectory amplitude, requiring the amplitudes of both oscillators to be equal, giving place to complete synchronization. Conversely, the constraint could also be in a function of the trajectory, e.g. the phase, giving place to phase synchronization (PS). In this case, one requires the phase difference between both oscillators to be finite for all times, while the trajectory amplitude may be uncorrelated. The study of PS has shown its relevance to important technological problems, e.g. communication, collective behavior in neural networks, pattern formation, Parkinson disease, epilepsy, as well as behavioral activities. It has been reported that it mediates processes of information transmission and collective behavior in neural and active networks and communication processes in the Human brain. In this work, we have pursed a general way to analyze the onset of PS in small and large networks. Firstly, we have analyzed many phase coordinates for compact attractors. We have shown that for a broad class of attractors the PS phenomenon is invariant under the phase definition. Our method enables to state about the existence of phase synchronization in coupled chaotic oscillators without having to measure the phase. This is done by observing the oscillators at special times, and analyzing whether this set of points is localized. We have show that this approach is fruitful to analyze the onset of phase synchronization in chaotic attractors whose phases are not well defined, as well as, in networks of non-identical spiking/bursting neurons connected by chemical synapses. Moreover, we have also related the synchronization and the information transmission through the conditional observations. In particular, we have found that inside a network clusters may appear. These can be used to transmit more than one information, which provides a multi-processing of information. Furthermore, These clusters provide a multichannel communication, that is, one can integrate a large number of neurons into a single communication system, and information can arrive simultaneously at different places of the network.},
  language  = {en}
}
@phdthesis{Pazienti2007,
  author    = {Pazienti, Antonio},
  title     = {Manipulations of spike trains and their impact on synchrony analysis},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-17447},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {The interaction between neuronal cells can be identified as the computing mechanism of the brain. Neurons are complex cells that do not operate in isolation, but they are organized in a highly connected network structure. There is experimental evidence that groups of neurons dynamically synchronize their activity and process brain functions at all levels of complexity. A fundamental step to prove this hypothesis is to analyze large sets of single neurons recorded in parallel. Techniques to obtain these data are meanwhile available, but advancements are needed in the pre-processing of the large volumes of acquired data and in data analysis techniques. Major issues include extracting the signal of single neurons from the noisy recordings (referred to as spike sorting) and assessing the significance of the synchrony. This dissertation addresses these issues with two complementary strategies, both founded on the manipulation of point processes under rigorous analytical control. On the one hand I modeled the effect of spike sorting errors on correlated spike trains by corrupting them with realistic failures, and studied the corresponding impact on correlation analysis. The results show that correlations between multiple parallel spike trains are severely affected by spike sorting, especially by erroneously missing spikes. When this happens sorting strategies characterized by classifying only good'' spikes (conservative strategies) lead to less accurate results than tolerant'' strategies. On the other hand, I investigated the effectiveness of methods for assessing significance that create surrogate data by displacing spikes around their original position (referred to as dithering). I provide analytical expressions of the probability of coincidence detection after dithering. The effectiveness of spike dithering in creating surrogate data strongly depends on the dithering method and on the method of counting coincidences. Closed-form expressions and bounds are derived for the case where the dither equals the allowed coincidence interval. This work provides new insights into the methodologies of identifying synchrony in large-scale neuronal recordings, and of assessing its significance.},
  language  = {en}
}
@article{PanznerGleberSantetal.2007,
  author    = {Panzner, Tobias and Gleber, Gudrun and Sant, Tushar and Leitenberger, Wolfram and Pietsch, Ullrich},
  title     = {Coherence experiments at the white-beam beamline of BESSYI},
  doi       = {10.1016/j.tsf.2006.12.002},
  year      = {2007},
  abstract  = {The third-generation X-ray source BESSYII (Berlin, Germany) provides coherent X-ray radiation which can be used for static and dynamic speckle analysis. Recently we have demonstrated that one can perform experiments with coherent white radiation provided by a bending magnet (5 < E < 20 keV). In this paper we show that the diffraction figure of the initial pinhole must be considered for the interpretation of coherent experiments. The reflectivity spectrum of a sample results from the Fresnel diffraction of the incident pinhole deformed by the static speckle features of the sample surface. For dynamical experiments all speckle like features alter with time whereas the pure Fresnel fringes remain constant. (c) 2007 Published by Elsevier B.V.},
  language  = {en}
}
@article{PalusKurthsSchwarzetal.2007,
  author    = {Palus, Milan and Kurths, J{\"u}rgen and Schwarz, Udo and Seehafer, Norbert and Novotna, Dagmar and Charvatova, Ivanka},
  title     = {The solar activity cycle is weakly synchronized with the solar inertial motion},
  doi       = {10.1016/j.physleta.2007.01.039},
  year      = {2007},
  abstract  = {We study possible interrelations between the 300-year record of the yearly sunspot numbers and the solar inertial motion (SIM) using the recently developed technique of synchronization analysis. Phase synchronization of the sunspot cycle and the SIM is found and statistically confirmed in three epochs (1734-1790, 1855-1875 and 1907-1960) of the whole period 1700-2000. These results give quantitative support to the hypothesis that there is a weak interaction between the solar activity and the SIM.},
  language  = {en}
}
@inproceedings{OskinovaHamannFeldmeier2007,
  author    = {Oskinova, Lida and Hamann, Wolf-Rainer and Feldmeier, Achim},
  title     = {X-raying clumped stellar winds},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-18133},
  year      = {2007},
  abstract  = {X-ray spectroscopy is a sensitive probe of stellar winds. X-rays originate from optically thin shock-heated plasma deep inside the wind and propagate outwards throughout absorbing cool material. Recent analyses of the line ratios from He-like ions in the X-ray spectra of O-stars highlighted problems with this general paradigm: the measured line ratios of highest ions are consistent with the location of the hottest X-ray emitting plasma very close to the base of the wind, perhaps indicating the presence of a corona, while measurements from lower ions conform with the wind-embedded shock model. Generally, to correctly model the emerging Xray spectra, a detailed knowledge of the cool wind opacities based on stellar atmosphere models is prerequisite. A nearly grey stellar wind opacity for the X-rays is deduced from the analyses of high-resolution X-ray spectra. This indicates that the stellar winds are strongly clumped. Furthermore, the nearly symmetric shape of X-ray emission line profiles can be explained if the wind clumps are radially compressed. In massive binaries the orbital variations of X-ray emission allow to probe the opacity of the stellar wind; results support the picture of strong wind clumping. In high-mass X-ray binaries, the stochastic X-ray variability and the extend of the stellar-wind part photoionized by X-rays provide further strong evidence that stellar winds consist of dense clumps.},
  language  = {en}
}
@phdthesis{Ong2007,
  author    = {Ong, James Kwan Yau},
  title     = {The predictability problem},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-15025},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {Wir versuchen herauszufinden, ob das subjektive Maß der Cloze-Vorhersagbarkeit mit der Kombination objektiver Maße (semantische und n-gram-Maße) gesch{\"a}tzt werden kann, die auf den statistischen Eigenschaften von Textkorpora beruhen. Die semantischen Maße werden entweder durch Abfragen von Internet-Suchmaschinen oder durch die Anwendung der Latent Semantic Analysis gebildet, w{\"a}hrend die n-gram-Wortmaße allein auf den Ergebnissen von Internet-Suchmaschinen basieren. Weiterhin untersuchen wir die Rolle der Cloze-Vorhersagbarkeit in SWIFT, einem Modell der Blickkontrolle, und w{\"a}gen ab, ob andere Parameter den der Vorhersagbarkeit ersetzen k{\"o}nnen. Unsere Ergebnisse legen nahe, dass ein computationales Modell, welches Vorhersagbarkeitswerte berechnet, nicht nur Maße beachten muss, die die Relatiertheit eines Wortes zum Kontext darstellen; das Vorhandensein eines Maßes bez{\"u}glich der Nicht-Relatiertheit ist von ebenso großer Bedeutung. Obwohl hier jedoch nur Relatiertheits-Maße zur Verf{\"u}gung stehen, sollte SWIFT ebensogute Ergebnisse liefern, wenn wir Cloze-Vorhersagbarkeit mit unseren Maßen ersetzen.},
  language  = {en}
}
@article{MontanariFabianiCianietal.2007,
  author    = {Montanari, Gian Carlo and Fabiani, Davide and Ciani, Franco and Motori, Antonio and Paajanen, Mika and Gerhard, Reimund and Wegener, Michael},
  title     = {Charging properties and time-temperature stability of innovative polymeric cellular ferroelectrets},
  issn      = {1070-9878},
  doi       = {10.1109/TDEI.2007.302892},
  year      = {2007},
  abstract  = {After appropriate mechanical and electrical treatments, some cellular polymers become able to retain space charge for a long time, i.e. they acquire electret behavior. The electrical treatment consists of charging under high levels of DC electric field. The mechanical treatment, based on the application of stretching forces to cellular polymer slabs that were before expanded under pressurized gas, affects the cavity size and shape, and therefore also the effectiveness of the charging process itself. An investigation of charging mechanisms, as well as of mechanical treatment, is therefore fundamental for optimizing the ferro- and piezo-electret properties. The aim of this paper is to discuss the effect of the physical dimension of the cavities on the charging behavior of cellular ferroelectrets and to focus on the time-temperature stability for two families of polymeric cellular ferroelectrets based on polypropylene (PP) and on a cyclo-olefin copolymer (COC). Emphasis will be given to the stretching process and in particular to the expansion rate applied during the manufacturing process (which affects the radial dimension and the height of the cavities, respectively). Space-charge and partial-discharge measurements as a function of time and temperature are the main tools to infer the influence of the cavity size on charging and stability characteristics.},
  language  = {en}
}
@phdthesis{Miteva2007,
  author    = {Miteva, Rositsa Stoycheva},
  title     = {Electron acceleration at localized wave structures in the solar corona},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-14775},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {Our dynamic Sun manifests its activity by different phenomena: from the 11-year cyclic sunspot pattern to the unpredictable and violent explosions in the case of solar flares. During flares, a huge amount of the stored magnetic energy is suddenly released and a substantial part of this energy is carried by the energetic electrons, considered to be the source of the nonthermal radio and X-ray radiation. One of the most important and still open question in solar physics is how the electrons are accelerated up to high energies within (the observed in the radio emission) short time scales. Because the acceleration site is extremely small in spatial extent as well (compared to the solar radius), the electron acceleration is regarded as a local process. The search for localized wave structures in the solar corona that are able to accelerate electrons together with the theoretical and numerical description of the conditions and requirements for this process, is the aim of the dissertation. Two models of electron acceleration in the solar corona are proposed in the dissertation: I. Electron acceleration due to the solar jet interaction with the background coronal plasma (the jet--plasma interaction) A jet is formed when the newly reconnected and highly curved magnetic field lines are relaxed by shooting plasma away from the reconnection site. Such jets, as observed in soft X-rays with the Yohkoh satellite, are spatially and temporally associated with beams of nonthermal electrons (in terms of the so-called type III metric radio bursts) propagating through the corona. A model that attempts to give an explanation for such observational facts is developed here. Initially, the interaction of such jets with the background plasma leads to an (ion-acoustic) instability associated with growing of electrostatic fluctuations in time for certain range of the jet initial velocity. During this process, any test electron that happen to feel this electrostatic wave field is drawn to co-move with the wave, gaining energy from it. When the jet speed has a value greater or lower than the one, required by the instability range, such wave excitation cannot be sustained and the process of electron energization (acceleration and/or heating) ceases. Hence, the electrons can propagate further in the corona and be detected as type III radio burst, for example. II. Electron acceleration due to attached whistler waves in the upstream region of coronal shocks (the electron--whistler--shock interaction) Coronal shocks are also able to accelerate electrons, as observed by the so-called type II metric radio bursts (the radio signature of a shock wave in the corona). From in-situ observations in space, e.g., at shocks related to co-rotating interaction regions, it is known that nonthermal electrons are produced preferably at shocks with attached whistler wave packets in their upstream regions. Motivated by these observations and assuming that the physical processes at shocks are the same in the corona as in the interplanetary medium, a new model of electron acceleration at coronal shocks is presented in the dissertation, where the electrons are accelerated by their interaction with such whistlers. The protons inflowing toward the shock are reflected there by nearly conserving their magnetic moment, so that they get a substantial velocity gain in the case of a quasi-perpendicular shock geometry, i.e, the angle between the shock normal and the upstream magnetic field is in the range 50--80 degrees. The so-accelerated protons are able to excite whistler waves in a certain frequency range in the upstream region. When these whistlers (comprising the localized wave structure in this case) are formed, only the incoming electrons are now able to interact resonantly with them. But only a part of these electrons fulfill the the electron--whistler wave resonance condition. Due to such resonant interaction (i.e., of these electrons with the whistlers), the electrons are accelerated in the electric and magnetic wave field within just several whistler periods. While gaining energy from the whistler wave field, the electrons reach the shock front and, subsequently, a major part of them are reflected back into the upstream region, since the shock accompanied with a jump of the magnetic field acts as a magnetic mirror. Co-moving with the whistlers now, the reflected electrons are out of resonance and hence can propagate undisturbed into the far upstream region, where they are detected in terms of type II metric radio bursts. In summary, the kinetic energy of protons is transfered into electrons by the action of localized wave structures in both cases, i.e., at jets outflowing from the magnetic reconnection site and at shock waves in the corona.},
  language  = {en}
}
@phdthesis{Merlo2007,
  author    = {Merlo, Claudia},
  title     = {A model of protein folding kinetics},
  address   = {Potsdam},
  pages     = {89 S. : graph. Darst.},
  year      = {2007},
  language  = {en}
}
@article{Menzel2007,
  author    = {Menzel, Ralf},
  title     = {Photonics : linear and nonlinear interactions of laser light and matter},
  publisher = {Springer},
  address   = {Berlin},
  isbn      = {978-540-67074-2},
  pages     = {1024 S.},
  year      = {2007},
  language  = {en}
}
@phdthesis{Makuch2007,
  author    = {Makuch, Martin},
  title     = {Circumplanetary dust dynamics : application to Martian dust tori and Enceladus dust plumes},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-14404},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {Our Solar system contains a large amount of dust, containing valuable information about our close cosmic environment. If created in a planet's system, the particles stay predominantly in its vicinity and can form extended dust envelopes, tori or rings around them. A fascinating example of these complexes are Saturnian rings containing a wide range of particles sizes from house-size objects in the main rings up to micron-sized grains constituting the E ring. Other example are ring systems in general, containing a large fraction of dust or also the putative dust-tori surrounding the planet Mars. The dynamical life'' of such circumplanetary dust populations is the main subject of our study. In this thesis a general model of creation, dynamics and death'' of circumplanetary dust is developed. Endogenic and exogenic processes creating dust at atmosphereless bodies are presented. Then, we describe the main forces influencing the particle dynamics and study dynamical responses induced by stochastic fluctuations. In order to estimate the properties of steady-state population of considered dust complex, the grain mean lifetime as a result of a balance of dust creation, life'' and loss mechanisms is determined. The latter strongly depends on the surrounding environment, the particle properties and its dynamical history. The presented model can be readily applied to study any circumplanetary dust complex. As an example we study dynamics of two dust populations in the Solar system. First we explore the dynamics of particles, ejected from Martian moon Deimos by impacts of micrometeoroids, which should form a putative tori along the orbit of the moon. The long-term influence of indirect component of radiation pressure, the Poynting-Robertson drag gives rise in significant change of torus geometry. Furthermore, the action of radiation pressure on rotating non-spherical dust particles results in stochastic dispersion of initially confined ensemble of particles, which causes decrease of particle number densities and corresponding optical depth of the torus. Second, we investigate the dust dynamics in the vicinity of Saturnian moon Enceladus. During three flybys of the Cassini spacecraft with Enceladus, the on-board dust detector registered a micron-sized dust population around the moon. Surprisingly, the peak of the measured impact rate occurred 1 minute before the closest approach of the spacecraft to the moon. This asymmetry of the measured rate can be associated with locally enhanced dust production near Enceladus south pole. Other Cassini instruments also detected evidence of geophysical activity in the south polar region of the moon: high surface temperature and extended plumes of gas and dust leaving the surface. Comparison of our results with this in situ measurements reveals that the south polar ejecta may provide the dominant source of particles sustaining the Saturn's E ring.},
  language  = {en}
}
@phdthesis{Liepelt2007,
  author    = {Liepelt, Steffen},
  title     = {Energy transduction in network models of molecular motors},
  address   = {Potsdam},
  pages     = {102 S. : graph. Darst.},
  year      = {2007},
  language  = {en}
}
@article{LeitenbergerPietsch2007,
  author    = {Leitenberger, Wolfram and Pietsch, Ullrich},
  title     = {A monolithic Fresnel bimirror for hard X-rays and its application for coherence measurements},
  issn      = {0909-0495},
  doi       = {10.1107/S0909049507003846},
  year      = {2007},
  abstract  = {Experiments using a simple X-ray interferometer to measure the degree of spatial coherence of hard X-rays are reported. A monolithic Fresnel bimirror is used at small incidence angles to investigate synchrotron radiation in the energy interval 5-50 keV with monochromatic and white beam. The experimental setup was equivalent to a Young's double-slit experiment for hard X-rays with slit dimensions in the micrometre range. From the high-contrast interference pattern the degree of coherence was determined.},
  language  = {en}
}
@article{LancaWirgesNeaguetal.2007,
  author    = {Lanca, M. C. and Wirges, Werner and Neagu, Eugen R. and Gerhard, Reimund and Marat-Mendes, Jos{\´e} Narciso},
  title     = {Influence of humidity on the electrical charging properties of cork agglomerates},
  issn      = {0022-3093},
  doi       = {10.1016/j.jnoncrysol.2007.03.037},
  year      = {2007},
  abstract  = {Cork is a natural cellular and electrically insulating material which may have the capacity to store electric charges on or in its cell walls. Since natural cork has many voids, it is difficult to obtain uniform samples with the required dimensions. Therefore, a more uniform material, namely commercial cork agglomerate, usually used for floor and wall coverings, is employed in the present study. Since we know from our previous work that the electrical properties of cork are drastically affected by absorbed and adsorbed water, samples were protected by means of different polymer coatings (applied by spin-coating or soaking). Corona charging and isothermal charging and discharging currents were used to study the electrical trapping and detrapping capabilities of the samples. A comparison of the results leads to the conclusion that the most promising method for storing electric charges in this cellular material consists of drying and coating or soaking with a hydrophobic, electrically insulating polymer such as polytetraflouroethylene (Teflon (R)). (c) 2007 Elsevier B.V. All rights reserved.},
  language  = {en}
}
@inproceedings{KustererNagelWerneretal.2007,
  author    = {Kusterer, D.-J. and Nagel, T. and Werner, K. and Feldmeier, Achim},
  title     = {Radiative transfer in CV disk winds},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-17847},
  year      = {2007},
  abstract  = {Mass accretion onto compact objects through accretion disks is a common phenomenon in the universe. It is seen in all energy domains from active galactic nuclei through cataclysmic variables (CVs) to young stellar objects. Because CVs are fairly easy to observe, they provide an ideal opportunity to study accretion disks in great detail and thus help us to understand accretion also in other energy ranges. Mass accretion in these objects is often accompanied by mass outflow from the disks. This accretion disk wind, at least in CVs, is thought to be radiatively driven, similar to O star winds. WOMPAT, a 3-D Monte Carlo radiative transfer code for accretion disk winds of CVs is presented.},
  language  = {en}
}
@phdthesis{Krumpe2007,
  author    = {Krumpe, Mirko},
  title     = {X-ray and optical properties of X-ray luminous active galactic nuclei},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-16993},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {Giacconi et al. (1962) discovered a diffuse cosmic X-ray background with rocket experiments when they searched for lunar X-ray emission. Later satellite missions found a spectral peak in the cosmic X-ray background at ~30 keV. Imaging X-ray satellites such as ROSAT (1990-1999) were able to resolve up to 80\% of the background below 2 keV into single point sources, mainly active galaxies. The cosmic X-ray background is the integration of all accreting super-massive (several million solar masses) black holes in the centre of active galaxies over cosmic time. Synthesis models need further populations of X-ray absorbed active galaxy nuclei (AGN) in order to explain the cosmic X-ray background peak at ~30 keV. Current X-ray missions such as XMM-Newton and Chandra offer the possibility of studying these additional populations. This Ph.D. thesis studies the populations that dominate the X-ray sky. For this purpose the 120 ksec XMM-Newton Marano field survey, named for an earlier optical quasar survey in the southern hemisphere, is analysed. Based on the optical follow-up observations the X-ray sources are spectroscopically classified. Optical and X-ray properties of the different X-ray source populations are studied and differences are derived. The amount of absorption in the X-ray spectra of type II AGN, which are considered as a main contributor to the X-ray background at ~30 keV, is determined. In order to extend the sample size of the rare type II AGN, this study also includes objects from another survey, the XMM-Newton Serendipitous Medium Sample. In addition, the dependence of the absorption in type II AGN with redshift and X-ray luminosity is analysed. We detected 328 X-ray sources in the Marano field. 140 sources were spectroscopically classified. We found 89 type I AGN, 36 type II AGN, 6 galaxies, and 9 stars. AGN, galaxies, and stars are clearly distinguishable by their optical and X-ray properties. Type I and II AGN do not separate clearly. They have a significant overlap in all studied properties. In a few cases the X-ray properties are in contradiction to the observed optical properties for type I and type II AGN. For example we find type II AGN that show evidence for optical absorption but are not absorbed in X-rays. Based on the additional use of near infra-red imaging (K-band), we were able to identify several of the rare type II AGN. The X-ray spectra of type II AGN from the XMM-Newton Marano field survey and the XMM-Newton Serendipitous Medium Sample were analysed. Since most of the sources have only ~40 X-ray counts in the XMM-Newton PN-detector, I carefully studied the fit results of simulated X-ray spectra as a function of fit statistic and binning method. The objects revealed only moderate absorption. In particular, I do not find any Compton-thick sources (absorbed by column densities of NH > 1.5 x 10^24 cm^-2). This gives evidence that type II AGN are not the main contributor of the X-ray background around 30 keV. Although bias effects may occur, type II AGN show no noticeable trend of the amount of absorption with redshift or X-ray luminosity.},
  language  = {en}
}
@article{KowarikGerlachLeitenbergeretal.2007,
  author    = {Kowarik, Stefan and Gerlach, Andreas and Leitenberger, Wolfram and Hu J, Witte and W{\"o}ll, Christoph and Schreiber, Frank},
  title     = {Energy-dispersive X-ray reflectivity and GID for real-time growth studies of pentacene thin films},
  issn      = {0040-6090},
  doi       = {10.1016/j.tsf.2006.12.020},
  year      = {2007},
  abstract  = {We use energy-dispersive X-ray reflectivity and grazing incidence diffraction (GID) to follow the growth of the crystalline organic semiconductor pentacene on silicon oxide in-situ and in real-time. The technique allows for monitoring Bragg reflections and measuring X-ray growth oscillations with a time resolution of 1 min in a wide q-range in reciprocal space extending over 0.25-0.80 angstrom(-1), i.e. sampling a large number of Fourier components simultaneously. A quantitative analysis of growth oscillations at several q-points yields the evolution of the surface roughness, showing a marked transition from layer-by-layer growth to strong roughening after four monolayers of pentacene have been deposited. (c) 2006 Elsevier B.V. All rights reserved.},
  language  = {en}
}
@phdthesis{Koseska2007,
  author    = {Koseska, Aneta},
  title     = {Modeling and control of synthetic gene regulatory networks},
  address   = {Potsdam},
  pages     = {viii, 82 S.},
  year      = {2007},
  language  = {en}
}
@phdthesis{Korn2007,
  author    = {Korn, Christian},
  title     = {Stochastic dynamics of cell adhesion in hydrodynamic flow},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-12997},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {In this thesis the interplay between hydrodynamic transport and specific adhesion is theoretically investigated. An important biological motivation for this work is the rolling adhesion of white blood cells experimentally investigated in flow chambers. There, specific adhesion is mediated by weak bonds between complementary molecular building blocks which are either located on the cell surface (receptors) or attached to the bottom plate of the flow chamber (ligands). The model system under consideration is a hard sphere covered with receptors moving above a planar ligand-bearing wall. The motion of the sphere is influenced by a simple shear flow, deterministic forces, and Brownian motion. An algorithm is given that allows to numerically simulate this motion as well as the formation and rupture of bonds between receptors and ligands. The presented algorithm spatially resolves receptors and ligands. This opens up the perspective to apply the results also to flow chamber experiments done with patterned substrates based on modern nanotechnological developments. In the first part the influence of flow rate, as well as of the number and geometry of receptors and ligands, on the probability for initial binding is studied. This is done by determining the mean time that elapses until the first encounter between a receptor and a ligand occurs. It turns out that besides the number of receptors, especially the height by which the receptors are elevated above the surface of the sphere plays an important role. These findings are in good agreement with observations of actual biological systems like white blood cells or malaria-infected red blood cells. Then, the influence of bonds which have formed between receptors and ligands, but easily rupture in response to force, on the motion of the sphere is studied. It is demonstrated that different states of motion-for example rolling-can be distinguished. The appearance of these states depending on important model parameters is then systematically investigated. Furthermore, it is shown by which bond property the ability of cells to stably roll in a large range of applied flow rates is increased. Finally, the model is applied to another biological process, the transport of spherical cargo particles by molecular motors. In analogy to the so far described systems molecular motors can be considered as bonds that are able to actively move. In this part of the thesis the mean distance the cargo particles are transported is determined.},
  language  = {en}
}
@article{KofodWirgesPaajanenetal.2007,
  author    = {Kofod, Guggi and Wirges, Werner and Paajanen, Mika and Bauer, Siegfried},
  title     = {Energy minimization for self-organized structure formation and actuation},
  issn      = {0003-6951},
  doi       = {10.1063/1.2695785},
  year      = {2007},
  abstract  = {An approach for creating complex structures with embedded actuation in planar manufacturing steps is presented. Self-organization and energy minimization are central to this approach, illustrated with a model based on minimization of the hyperelastic free energy strain function of a stretched elastomer and the bending elastic energy of a plastic frame. A tulip-shaped gripper structure illustrates the technological potential of the approach. Advantages are simplicity of manufacture, complexity of final structures, and the ease with which any electroactive material can be exploited as means of actuation. (c) 2007 American Institute of Physics.},
  language  = {en}
}
@phdthesis{Khalatyan2007,
  author    = {Khalatyan, Arman},
  title     = {The influence of nuclear activity onto the morphology of galaxies},
  address   = {Potsdam},
  pages     = {XVII, 155 S. : Ill., graph. Darst.},
  year      = {2007},
  language  = {en}
}
@article{IntravaiaHenkelLambrecht2007,
  author    = {Intravaia, Francesco and Henkel, Carsten and Lambrecht, Astrid},
  title     = {Role of surface plasmons in the Casimir effect},
  year      = {2007},
  abstract  = {In this paper we study the role of surface plasmon modes in the Casimir effect. The Casimir energy can be written as a sum over the modes of a real cavity and one may identify two sorts of modes, two evanescent surface plasmon modes and propagative modes. As one of the surface plasmon modes becomes propagative for some choice of parameters we adopt an adiabatic mode definition where we follow this mode into the propagative sector and count it together with the surface plasmon contribution, calling this contribution ``plasmonic''. We evaluate analytically the contribution of the plasmonic modes to the Casimir energy. Surprisingly we find that this becomes repulsive for intermediate and large mirror separations. The contribution of surface plasmons to the Casimir energy plays a fundamental role not only at short but also at large distances. This suggests possibilities to taylor the Casimir force via a manipulation of the surface plasmon properties.},
  language  = {en}
}
@article{Henkel2007,
  author    = {Henkel, Carsten},
  title     = {Laser theory in manifest Lindblad form},
  issn      = {0953-4075},
  year      = {2007},
  abstract  = {We discuss the laser theory for a single-mode laser with nonlinear gain. We focus in particular on a micromaser which is pumped with a dilute beam of excited atoms crossing the laser cavity. In the weak-coupling regime, an expansion in the coupling strength is developed that preserves the Lindblad form of the master equation, securing the positivity of the density matrix. This can be improved with an alternative approach, not restricted to weak coupling: the Lindblad operators are expanded in orthogonal polynomials adapted to the probability distribution for the atom-laser interaction time. Results for the photon statistics and the laser linewidth illustrate the theory.},
  language  = {en}
}
@inproceedings{HamannOskinovaFeldmeier2007,
  author    = {Hamann, Wolf-Rainer and Oskinova, Lida and Feldmeier, Achim},
  title     = {Spectrum formation in clumpy stellar winds},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-17838},
  year      = {2007},
  abstract  = {Modeling expanding atmospheres is a difficult task because of the extreme non-LTE situation, the need to account for complex model atoms, especially for the iron-group elements with their millions of lines, and because of the supersonic expansion. Adequate codes have been developed e.g. by Hillier (CMFGEN), the Munich group (Puls, Pauldrach), and in Potsdam (PoWR code, Hamann et al.). While early work was based on the assumption of a smooth and homogeneous spherical stellar wind, the need to account for clumping became obvious about ten years ago. A relatively simple first-order clumping correction was readily implemented into the model codes. However, its simplifying assumptions are severe. Most importantly, the clumps are taken to be optically thin at all frequencies ("microclumping"). We discuss the consequences of this approximation and describe an approach to account for optically thick clumps ("macroclumping"). First results demonstrate that macroclumping can generally reduce the strength of spectral features, depending on their optical thickness. The recently reported discrepancy between the Hα diagnostic and the Pv resonance lines in O star spectra can be resolved without decreasing the mass-loss rates, when macroclumping is taken into account.},
  language  = {en}
}
@book{Gutlederer2007,
  author    = {Gutlederer, Erwin Johann},
  title     = {On the morphology of vesicles. - [{\"u}berarb. Diss.]},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-15065},
  publisher      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {This dissertation contains theoretical investigations on the morphology and statistical mechanics of vesicles. The shapes of homogeneous fluid vesicles and inhomogeneous vesicles with fluid and solid membrane domains are calculated. The influence of thermal fluctuations is investigated. The obtained results are valid on mesoscopic length scales and are based on a geometrical membrane model, where the vesicle membrane is described as either a static or a thermal fluctuating surface. The thesis consists of three parts. In the first part, homogeneous vesicles are considered. The focus in this part is on the thermally induced morphological transition between vesicles with prolate and oblate shape. With the help of Monte Carlo simulations, the free energy profile of these vesicles is determined. It can be shown that the shape transformation between prolate and oblate vesicles proceeds continuously and is not hampered by a free energy barrier. The second and third part deal with inhomogeneous vesicles which contain intramembrane domains. These investigations are motivated by experimental results on domain formation in single or multicomponent vesicles, where phase separation occurs and different membrane phases coexist. The resulting domains differ with regard to their membrane structure (solid, fluid). The membrane structure has a distinct effect on the form of the domain and the morphology of the vesicle. In the second part, vesicles with coexisting solid and fluid membrane domains are studied, while the third part addresses vesicles with coexisting fluid domains. The equilibrium morphology of vesicles with simple and complex domain forms, derived through minimisation of the membrane energy, is determined as a function of material parameters. The results are summarised in morphology diagrams. These diagrams show previously unknown morphological transitions between vesicles with different domain shapes. The impact of thermal fluctuations on the vesicle and the form of the domains is investigated by means of Monte Carlo simulations.},
  language  = {en}
}
@phdthesis{Gutjahr2007,
  author    = {Gutjahr, Petra},
  title     = {Conformations of semiflexible polymers and filaments},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-15918},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {The biological function and the technological applications of semiflexible polymers, such as DNA, actin filaments and carbon nanotubes, strongly depend on their rigidity. Semiflexible polymers are characterized by their persistence length, the definition of which is the subject of the first part of this thesis. Attractive interactions, that arise e.g.~in the adsorption, the condensation and the bundling of filaments, can change the conformation of a semiflexible polymer. The conformation depends on the relative magnitude of the material parameters and can be influenced by them in a systematic manner. In particular, the morphologies of semiflexible polymer rings, such as circular nanotubes or DNA, which are adsorbed onto substrates with three types of structures, are studied: (i) A topographical channel, (ii) a chemically modified stripe and (iii) a periodic pattern of topographical steps. The results are compared with the condensation of rings by attractive interactions. Furthermore, the bundling of two individual actin filaments, whose ends are anchored, is analyzed. This system geometry is shown to provide a systematic and quantitative method to extract the magnitude of the attraction between the filaments from experimentally observable conformations of the filaments.},
  language  = {en}
}
@inproceedings{Graefener2007,
  author    = {Gr{\"a}fener, G.},
  title     = {Clumping in hydrodynamic atmosphere models},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-17925},
  year      = {2007},
  abstract  = {We investigate the effect of wind clumping on the dynamics of Wolf-Rayet winds, by means of the Potsdam Wolf-Rayet (PoWR) hydrodynamic atmosphere models. In the limit of microclumping the radiative acceleration is generally enhanced. We examine the reasons for this effect and show that the resulting wind structure depends critically on the assumed radial dependence of the clumping factor D(r). The observed terminal wind velocities for WR stars imply that D(r) increases to very large values in the outer part of the wind, in agreement with the assumption of detached expanding shells.},
  language  = {en}
}