@article{ShainyanKirpichenkoKleinpeteretal.2013, author = {Shainyan, Bagrat A. and Kirpichenko, Svetlana V. and Kleinpeter, Erich and Shlykov, Sergey A. and Osadchiy, Dmitriy Yu and Chipanina, Nina N. and Oznobikhina, Larisa P.}, title = {1,3-Dimethy1-3-silapiperidine - synthesis, molecular structure, and conformational analysis by gas-phase electron diffraction, low temperature NMR, IR and Raman Spectroscopy, and quantum chemical calculations}, series = {The journal of organic chemistry}, volume = {78}, journal = {The journal of organic chemistry}, number = {8}, publisher = {American Chemical Society}, address = {Washington}, issn = {0022-3263}, doi = {10.1021/jo400289g}, pages = {3939 -- 3947}, year = {2013}, abstract = {The first Si-H-containing azasilaheterocycle, 1,3-dimethyl-3-silapiperidine 1, was synthesized, and its molecular structure and conformational properties were studied by gas-phase electron diffraction (GED), low temperature NMR, IR and Raman spectroscopy and quantum chemical calculations. The compound exists as a mixture of two conformers possessing the chair conformation with the equatorial NMe group and differing by axial or equatorial position of the SiMe group. In the gas phase, the SiMeax conformer predominates (GED: ax/eq = 65(7):35(7)\%,Delta G = 0.36(18) kcal/mol; IR: ax/eq = 62(5):38(5)\%,Delta G = 0.16(7) kcal/mol). In solution, at 143 k the SiMeeq conformer predominates' in the frozen equilibrium (NMR: ax/eq = 31.5(1.5):68.5(1.5)\%, Delta G = -0.22(2) kcal/mol). Thermodynamic parameters of the ring inversion are determined (Delta G(double dagger) = 8.9-9.0 kcal/mol, Delta H-double dagger = 9.6 kcal/mol, Delta S-double dagger = 2.1 eu). High-level quantum chemical calculations :(MP2, G2, CCSD(T)) nicely reproduce the experimental geometry and the predominance of the axial conformer in the gas phase.}, language = {en} } @article{SchmidtSingleton2013, author = {Schmidt, Hans-J{\"u}rgen and Singleton, Douglas}, title = {Exact radial solution in 2+1 gravity with a real scalar field}, series = {Physics letters : B}, volume = {721}, journal = {Physics letters : B}, number = {4-5}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0370-2693}, doi = {10.1016/j.physletb.2013.03.007}, pages = {294 -- 298}, year = {2013}, abstract = {In this Letter we give some general considerations about circularly symmetric, static space-times in 2 + 1 dimensions, focusing first on the surprising (at the time) existence of the BTZ black hole solution. We show that BTZ black holes and Schwarzschild black holes in 3 + 1 dimensions originate from different definitions of a black hole. There are two by-products of this general discussion: (i) we give a new and simple derivation of (2 + 1)-dimensional Anti-de Sitter (AdS) space-time; (ii) we present an exact solution to (2 + 1)-dimensional gravity coupled to a self-interacting real scalar field. The spatial part of the metric of this solution is flat but the temporal part behaves asymptotically like AdS space-time. The scalar field has logarithmic behavior as one would expect for a massless scalar field in flat space-time. The solution can be compared to gravitating scalar field solutions in 3 + 1 dimensions but with certain oddities connected with the (2 + 1)-dimensional character of the space-time. The solution is unique to 2 + 1 dimensions; it does not carry over to 3 + 1 dimensions.}, language = {en} } @article{PavesiTiedemannDeMatthaeisetal.2013, author = {Pavesi, Laura and Tiedemann, Ralph and De Matthaeis, Elvira and Ketmaier, Valerio}, title = {Genetic connectivity between land and sea - the case of the beachflea Orchestia montagui (Crustacea, Amphipoda, Talitridae) in the Mediterranean Sea}, series = {Frontiers in zoology}, volume = {10}, journal = {Frontiers in zoology}, number = {4-5}, publisher = {BioMed Central}, address = {London}, issn = {1742-9994}, doi = {10.1186/1742-9994-10-21}, pages = {19}, year = {2013}, abstract = {Introduction: We examined patterns of genetic divergence in 26 Mediterranean populations of the semi-terrestrial beachflea Orchestia montagui using mitochondrial (cytochrome oxidase subunit I), microsatellite (eight loci) and allozymic data. The species typically forms large populations within heaps of dead seagrass leaves stranded on beaches at the waterfront. We adopted a hierarchical geographic sampling to unravel population structure in a species living at the sea-land transition and, hence, likely subjected to dramatically contrasting forces. Results: Mitochondrial DNA showed historical phylogeographic breaks among Adriatic, Ionian and the remaining basins (Tyrrhenian, Western and Eastern Mediterranean Sea) likely caused by the geological and climatic changes of the Pleistocene. Microsatellites (and to a lesser extent allozymes) detected a further subdivision between and within the Western Mediterranean and the Tyrrhenian Sea due to present-day processes. A pattern of isolation by distance was not detected in any of the analyzed data set. Conclusions: We conclude that the population structure of O. montagui is the result of the interplay of two contrasting forces that act on the species population genetic structure. On one hand, the species semi-terrestrial life style would tend to determine the onset of local differences. On the other hand, these differences are partially counter-balanced by passive movements of migrants via rafting on heaps of dead seagrass leaves across sites by sea surface currents. Approximate Bayesian Computations support dispersal at sea as prevalent over terrestrial regionalism.}, language = {en} } @article{TiscarenoMitchellMurrayetal.2013, author = {Tiscareno, Matthew S. and Mitchell, Colin J. and Murray, Carl D. and Di Nino, Daiana and Hedman, Matthew M. and Schmidt, J{\"u}rgen and Burns, Joseph A. and Cuzzi, Jeffrey N. and Porco, Carolyn C. and Beurle, Kevin and Evans, Michael W.}, title = {Observations of Ejecta clouds produced by impacts onto Saturn's rings}, series = {Science}, volume = {340}, journal = {Science}, number = {6131}, publisher = {American Assoc. for the Advancement of Science}, address = {Washington}, issn = {0036-8075}, doi = {10.1126/science.1233524}, pages = {460 -- 464}, year = {2013}, abstract = {We report observations of dusty clouds in Saturn's rings, which we interpret as resulting from impacts onto the rings that occurred between 1 and 50 hours before the clouds were observed. The largest of these clouds was observed twice; its brightness and cant angle evolved in a manner consistent with this hypothesis. Several arguments suggest that these clouds cannot be due to the primary impact of one solid meteoroid onto the rings, but rather are due to the impact of a compact stream of Saturn-orbiting material derived from previous breakup of a meteoroid. The responsible interplanetary meteoroids were initially between 1 centimeter and several meters in size, and their influx rate is consistent with the sparse prior knowledge of smaller meteoroids in the outer solar system.}, language = {en} } @article{NestLudwigUlusoyetal.2013, author = {Nest, Mathias and Ludwig, M. and Ulusoy, I. and Klamroth, Tillmann and Saalfrank, Peter}, title = {Electron correlation dynamics in atoms and molecules}, series = {The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr}, volume = {138}, journal = {The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr}, number = {16}, publisher = {American Institute of Physics}, address = {Melville}, issn = {0021-9606}, doi = {10.1063/1.4801867}, pages = {6}, year = {2013}, abstract = {In this paper, we present quantum dynamical calculations on electron correlation dynamics in atoms and molecules using explicitly time-dependent ab initio configuration interaction theory. The goals are (i) to show that in which cases it is possible to switch off the electronic correlation by ultrashort laser pulses, and (ii) to understand the temporal evolution and the time scale on which it reappears. We characterize the appearance of correlation through electron-electron scattering when starting from an uncorrelated state, and we identify pathways for the preparation of a Hartree-Fock state from the correlated, true ground state. Exemplary results for noble gases, alkaline earth elements, and selected molecules are provided. For Mg we show that the uncorrelated state can be prepared using a shaped ultrashort laser pulse.}, language = {en} } @article{VahabiSchulzShokrietal.2013, author = {Vahabi, Mahsa and Schulz, Johannes H. P. and Shokri, Babak and Metzler, Ralf}, title = {Area coverage of radial Levy flights with periodic boundary conditions}, series = {Physical review : E, Statistical, nonlinear and soft matter physics}, volume = {87}, journal = {Physical review : E, Statistical, nonlinear and soft matter physics}, number = {4}, publisher = {American Physical Society}, address = {College Park}, issn = {1539-3755}, doi = {10.1103/PhysRevE.87.042136}, pages = {10}, year = {2013}, abstract = {We consider the area coverage of radial Levy flights in a finite square area with periodic boundary conditions. From simulations we show how the fractal path dimension d(f) and thus the degree of area coverage depends on the number of steps of the trajectory, the size of the area, and the resolution of the applied box counting algorithm. For sufficiently long trajectories and not too high resolution, the fractal dimension returned by the box counting method equals two, and in that sense the Levy flight fully covers the area. Otherwise, the determined fractal dimension equals the stable index of the distribution of jump lengths of the Levy flight. We provide mathematical expressions for the turnover between these two scaling regimes. As complementary methods to analyze confined Levy flights we investigate fractional order moments of the position for which we also provide scaling arguments. Finally, we study the time evolution of the probability density function and the first passage time density of Levy flights in a square area. Our findings are of interest for a general understanding of Levy flights as well as for the analysis of recorded trajectories of animals searching for food or for human motion patterns.}, language = {en} } @article{LeunertGrossartGerhardtetal.2013, author = {Leunert, Franziska and Grossart, Hans-Peter and Gerhardt, Volkmar and Eckert, Werner}, title = {Toxicant induced changes on delayed fluorescence decay kinetics of cyanobacteria and green algae a rapid and sensitive biotest}, series = {PLoS one}, volume = {8}, journal = {PLoS one}, number = {4}, publisher = {PLoS}, address = {San Fransisco}, issn = {1932-6203}, doi = {10.1371/journal.pone.0063127}, pages = {7}, year = {2013}, abstract = {Algal tests have developed into routine tools for testing toxicity of pollutants in aquatic environments. Meanwhile, in addition to algal growth rates, an increasing number of fluorescence based methods are used for rapid and sensitive toxicity measures. The present study stresses the suitability of delayed fluorescence (DF) as a promising parameter for biotests. DF is based on the recombination fluorescence at the reaction centre of photosystem II, which is emitted only by photosynthetically active cells. We analyzed the effects of three chemicals (3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU), 3,5 Dichlorophenol (3,5 DCP) and copper) on the shape of the DF decay kinetics for potential use in phytoplankton toxicity tests. The short incubation tests were done with four phytoplankton species, with special emphasis on the cyanobacterium Microcystis aeruginosa. All species exhibited a high sensitivity to DCMU, but cyanobacteria were more affected by copper and less by 3,5 DCP than the tested green algae. Analyses of changes in the DF decay curve in response to the added chemicals indicated the feasibility of the DF decay approach as a rapid and sensitive testing tool.}, language = {en} } @article{CotroneiHolschneider2013, author = {Cotronei, Mariantonia and Holschneider, Matthias}, title = {Partial parameterization of orthogonal wavelet matrix filters}, series = {Journal of computational and applied mathematics}, volume = {243}, journal = {Journal of computational and applied mathematics}, number = {4}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0377-0427}, doi = {10.1016/j.cam.2012.11.016}, pages = {113 -- 125}, year = {2013}, abstract = {In this paper we propose a procedure which allows the construction of a large family of FIR d x d matrix wavelet filters by exploiting the one-to-one correspondence between QMF systems and orthogonal operators which commute with the shifts by two. A characterization of the class of filters of full rank type that can be obtained with such procedure is given. In particular, we restrict our attention to a special construction based on the representation of SO(2d) in terms of the elements of its Lie algebra. Explicit expressions for the filters in the case d = 2 are given, as a result of a local analysis of the parameterization obtained from perturbing the Haar system.}, language = {en} } @article{KoenigPapkeKopyshevetal.2013, author = {K{\"o}nig, Tobias and Papke, Thomas and Kopyshev, Alexey and Santer, Svetlana}, title = {Atomic force microscopy nanolithography fabrication of metallic nano-slits using silicon nitride tips}, series = {Journal of materials science}, volume = {48}, journal = {Journal of materials science}, number = {10}, publisher = {Springer}, address = {New York}, issn = {0022-2461}, doi = {10.1007/s10853-013-7188-x}, pages = {3863 -- 3869}, year = {2013}, abstract = {In this paper, we report on the properties of nano-slits created in metal thin films using atomic force microscope (AFM) nanolithography (AFM-NL). We demonstrate that instead of expensive diamond AFM tips, it is also possible to use low cost silicon nitride tips. It is shown that depending on the direction of scratching, nano-slits of different widths and depths can be fabricated at constant load force. We elucidate the reasons for this behavior and identify an optimal direction and load force for scratching a gold layer.}, language = {en} } @article{DulanyaReedTrauth2013, author = {Dulanya, Zuze and Reed, Jane M. and Trauth, Martin H.}, title = {Mapping changing shorelines in the Malombe and Chiuta lakes of Malawi-environmental effects of recent climatic variations}, series = {Catena : an interdisciplinary journal of soil science, hydrology, geomorphology focusing on geoecology and landscape evolution}, volume = {104}, journal = {Catena : an interdisciplinary journal of soil science, hydrology, geomorphology focusing on geoecology and landscape evolution}, number = {10}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0341-8162}, doi = {10.1016/j.catena.2012.10.016}, pages = {111 -- 119}, year = {2013}, abstract = {This study examines patterns of climate variability by mapping shoreline changes between 1973 and 2008 for two shallow lakes in Malawi, East Africa. Multi-temporal LANDSAT data covering eight different years within the period of investigation were utilised for lake-area mapping, using image classification techniques. The approach was verified using simple comparisons with local rainfall data and satellite altimetry data. Results indicated that the lake areas varied between the different years investigated and that, although the lakes were affected by the same climate-forcing mechanisms, the individual basin characteristics had a critical effect on their responses. The most likely drivers for the climate-related shoreline variations are the El Nino/Southern Oscillation (ENSO) and the Indian Ocean Dipole (IOD), causing synchronous changes to the water levels in both lakes, albeit showing differences in climate signal amplification.}, language = {en} } @article{Murr2013, author = {Murr, R{\"u}diger}, title = {Characterization of infinite divisibility by duality formulas application to Levy processes and random measures}, series = {Stochastic processes and their application}, volume = {123}, journal = {Stochastic processes and their application}, number = {5}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0304-4149}, doi = {10.1016/j.spa.2012.12.012}, pages = {1729 -- 1749}, year = {2013}, abstract = {Processes with independent increments are proven to be the unique solutions of duality formulas. This result is based on a simple characterization of infinitely divisible random vectors by a functional equation in which a difference operator appears. This operator is constructed by a variational method and compared to approaches involving chaos decompositions. We also obtain a related characterization of infinitely divisible random measures.}, language = {en} } @article{KyprianidisCollomosseWangetal.2013, author = {Kyprianidis, Jan Eric and Collomosse, John and Wang, Tinghuai and Isenberg, Tobias}, title = {State of the "Art" a taxonomy of artistic stylization techniques for images and video}, series = {IEEE transactions on visualization and computer graphics}, volume = {19}, journal = {IEEE transactions on visualization and computer graphics}, number = {5}, publisher = {Inst. of Electr. and Electronics Engineers}, address = {Los Alamitos}, issn = {1077-2626}, doi = {10.1109/TVCG.2012.160}, pages = {866 -- 885}, year = {2013}, abstract = {This paper surveys the field of nonphotorealistic rendering (NPR), focusing on techniques for transforming 2D input (images and video) into artistically stylized renderings. We first present a taxonomy of the 2D NPR algorithms developed over the past two decades, structured according to the design characteristics and behavior of each technique. We then describe a chronology of development from the semiautomatic paint systems of the early nineties, through to the automated painterly rendering systems of the late nineties driven by image gradient analysis. Two complementary trends in the NPR literature are then addressed, with reference to our taxonomy. First, the fusion of higher level computer vision and NPR, illustrating the trends toward scene analysis to drive artistic abstraction and diversity of style. Second, the evolution of local processing approaches toward edge-aware filtering for real-time stylization of images and video. The survey then concludes with a discussion of open challenges for 2D NPR identified in recent NPR symposia, including topics such as user and aesthetic evaluation.}, language = {en} } @article{WeisseLaufensteinWeithoff2013, author = {Weisse, Thomas and Laufenstein, Nicole and Weithoff, Guntram}, title = {Multiple environmental stressors confine the ecological niche of the rotifer Cephalodella acidophila}, series = {Freshwater biology}, volume = {58}, journal = {Freshwater biology}, number = {5}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0046-5070}, doi = {10.1111/fwb.12104}, pages = {1008 -- 1015}, year = {2013}, abstract = {1The planktonic food web in extremely acidic mining lakes is restricted to a few species that are either acidophilic or acidotolerant. Common metazoans inhabiting acidic mining lakes with a pH below 3 include rotifers in the genera Cephalodella and Elosa. 2The life history response of Cephalodella acidophila to three environmental key factors, pH (2, 3.5, 5.0 and 7.0), temperature (10, 17.5 and 25 degrees C) and food concentration (10000, 35000 and 50000algal cells per mL), was investigated in a full factorial design using life-table experiments. 3The effect of each of the three environmental variables investigated on the rotifer life cycle parameters (life span, fecundity and population growth rate) differed. C.acidophila is a stenoecious species with a pH optimum in the range 34 and a comparably high food threshold. Combining the laboratory results with field data, we conclude that C.acidophila is severely growth limited in its natural habitat. However, low pH alone is not harmful as long as temperatures are moderate to warm and food is abundant. 4The population of C.acidophila in the field is maintained mainly due to release from competitors and predators.}, language = {en} } @article{SchmidtElizarovBergeretal.2013, author = {Schmidt, Bernd and Elizarov, Nelli and Berger, Ren{\´e} and Petersen, Monib H.}, title = {From paracetamol to rolipram and derivatives - application of deacetylation-diazotation sequences and palladium-catalyzed matsuda-heck reaction}, series = {Synthesis}, volume = {45}, journal = {Synthesis}, number = {9}, publisher = {Thieme}, address = {Stuttgart}, issn = {0039-7881}, doi = {10.1055/s-0032-1316874}, pages = {1174 -- 1180}, year = {2013}, abstract = {A six-step synthesis of the antidepressant rolipram from the popular analgetic 4-acetamidophenol (paracetamol) is described. The steps include oxidative functionalization of the aromatic core, diazonium salt formation via deacetylation-diazotation, Matsuda-Heck reaction, conjugate addition of nitromethane, and hydrogenative cyclization.}, language = {en} } @article{NazarovadeHoogHoffetal.2013, author = {Nazarova, Larisa B. and de Hoog, Verena and Hoff, Ulrike and Dirksen, Oleg and Diekmann, Bernhard}, title = {Late Holocene climate and environmental changes in Kamchatka inferred from the subfossil chironomid record}, series = {Quaternary science reviews : the international multidisciplinary research and review journal}, volume = {67}, journal = {Quaternary science reviews : the international multidisciplinary research and review journal}, number = {9}, publisher = {Elsevier}, address = {Oxford}, issn = {0277-3791}, doi = {10.1016/j.quascirev.2013.01.018}, pages = {81 -- 92}, year = {2013}, abstract = {This study presents a reconstruction of the Late Holocene climate in Kamchatka based on chironomid remains from a 332 cm long composite sediment core recovered from Dvuyurtochnoe Lake (Two-Yurts Lake, TYL) in central Kamchatka. The oldest recovered sediments date to about 4500 cal years BP. Chironomid head capsules from TYL reflect a rich and diverse fauna. An unknown morphotype of Tanytarsini, Tanytarsus type klein, was found in the lake sediments. Our analysis reveals four chironomid assemblage zones reflecting four different climatic periods in the Late Holocene. Between 4500 and 4000 cal years BP, the chironomid composition indicates a high lake level, well-oxygenated lake water conditions and close to modern temperatures (similar to 13 degrees C). From 4000 to 1000 cal years BP, two consecutive warm intervals were recorded, with the highest reconstructed temperature reaching 16.8 degrees C between 3700 and 2800 cal years BP. Cooling trend, started around 1100 cal years BP led to low temperatures during the last stage of the Holocene. Comparison with other regional studies has shown that termination of cooling at the beginning of late Holocene is relatively synchronous in central Kamchatka, South Kurile, Bering and Japanese Islands and take place around 3700 cal years BP. From ca 3700 cal years BP to the last millennium, a newly strengthened climate continentality accompanied by general warming trend with minor cool excursions led to apparent spatial heterogeneity of climatic patterns in the region. Some timing differences in climatic changes reconstructed from chironomid record of TYL sediments and late Holocene events reconstructed from other sites and other proxies might be linked to differences in local forcing mechanisms or caused by the different degree of dating precision, the different temporal resolution, and the different sensitive responses of climate proxies to the climate variations. Further high-resolution stratigraphic studies in this region are needed to understand the spatially complex pattern of climate change in Holocene in Kamchatka and the surrounding region.}, language = {en} } @article{LueckRuehlmann2013, author = {L{\"u}ck, Erika and R{\"u}hlmann, J{\"o}rg}, title = {Resistivity mapping with GEOPHILUS ELECTRICUS - Information about lateral and vertical soil heterogeneity}, series = {Geoderma : an international journal of soil science}, volume = {199}, journal = {Geoderma : an international journal of soil science}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0016-7061}, doi = {10.1016/j.geoderma.2012.11.009}, pages = {2 -- 11}, year = {2013}, abstract = {GEOPHILUS ELECTRICUS (nickname GEOPHILUS) is a novel system for mapping the complex electrical bulk resistivity of soils. Rolling electrodes simultaneously measure amplitude and phase data at frequencies ranging from 1 mHz to 1 kHz. The sensor's design and technical specifications allow for measuring these parameters at five depths of up to ca. 1.5 m. Data inversion techniques can be employed to determine resistivity models instead of apparent values and to image soil layers and their geometry with depth. When used in combination with a global positioning system (GPS) and a suitable cross-country vehicle, it is possible to map about 100 ha/day (assuming 1 data point is recorded per second and the line spacing is 18 m). The applicability of the GEOPHILUS system has been demonstrated on several sites, where soils show variations in texture, stratification, and thus electrical characteristics. The data quality has been studied by comparison with 'static' electrodes, by repeated measurements, and by comparison with other mobile conductivity mapping devices (VERIS3100 and EM38). The high quality of the conductivity data produced by the GEOPHILUS system is evident and demonstrated by the overall consistency of the individual maps, and in the clear stratification also confirmed by independent data. The GEOPHILUS system measures complex values of electrical resistivity in terms of amplitude and phase. Whereas electrical conductivity data (amplitude) are well established in soil science, the interpretation of phase data is a topic of current research. Whether phase data are able to provide additional information depends on the site-specific settings. Here, we present examples, where phase data provide complementary information on man-made structures such as metal pipes and soil compaction.}, language = {en} } @article{FrindteEckertAttermeyeretal.2013, author = {Frindte, Katharina and Eckert, Werner and Attermeyer, Katrin and Grossart, Hans-Peter}, title = {Internal wave-induced redox shifts affect biogeochemistry and microbial activity in sediments - a simulation experiment}, series = {Biogeochemistry}, volume = {113}, journal = {Biogeochemistry}, number = {1-3}, publisher = {Springer}, address = {Dordrecht}, issn = {0168-2563}, doi = {10.1007/s10533-012-9769-1}, pages = {423 -- 434}, year = {2013}, abstract = {Internal waves (seiches) are well-studied physical processes in stratified lakes, but their effects on sediment porewater chemistry and microbiology are still largely unexplored. Due to pycnocline oscillations, sediments are exposed to recurrent changes between epilimnetic and hypolimnetic water. This results in strong differences of environmental conditions, which should be reflected in the responses of redox-sensitive biogeochemical processes at both, the sediment-water interface and deeper sediment layers. We tested in a series of mesocosm experiments the influence of seiche-induced redox changes on porewater chemistry and bacterial activity in the sediments under well controlled conditions. Thereby, we excluded effects of changes in current and temperature regimes. For a period of 10 days, intact sediment cores from oligotrophic Lake Stechlin were incubated under constant (either oxic or anoxic) or alternating redox conditions. Solute concentrations were measured as porewater profiles in the sediment, while microbial activity was determined in the upper 0.5 cm of sediment. Oxic and alternating redox conditions resulted in similar ammonium, phosphate, and methane porewater concentrations, while concentrations of each analyte were considerably higher in anoxic cores. Microbial activity was clearly lower in the anoxic cores than in the oxic and the alternating cores. In conclusion, cores with intermittent anoxic phases of up to 24 hours do not differ in biogeochemistry and microbial activities from static oxic sediments. However, due to various physical processes seiches cause oxygen to penetrate deeper into sediment layers, which affects sediment redox gradients and increase microbial activity in seiche-influenced sediments.}, language = {en} } @article{AbdissaInduliAkalaetal.2013, author = {Abdissa, Negera and Induli, Martha and Akala, Hoseah M. and Heydenreich, Matthias and Midiwo, Jacob O. and Ndakala, Albert and Yenesew, Abiy}, title = {Knipholone cyclooxanthrone and an anthraquinone dimer with antiplasmodial activities from the roots of Kniphofia foliosa}, series = {Phytochemistry letters}, volume = {6}, journal = {Phytochemistry letters}, number = {2}, publisher = {Elsevier}, address = {Amsterdam}, issn = {1874-3900}, doi = {10.1016/j.phytol.2013.02.005}, pages = {241 -- 245}, year = {2013}, abstract = {A new phenylanthrone, named knipholone cyclooxanthrone and a dimeric anthraquinone, 10-methoxy-10,7'-(chrysophanol anthrone)-chrysophanol were isolated from the roots of Kniphofia foliosa together with the rare naphthalene glycoside, dianellin. The structures were determined by NMR and mass spectroscopic techniques. The compounds showed antiplasmodial activities against the chloroquine-resistant (W2) and chloroquine-sensitive (D6) strains of Plasmodium falciparum with 10-methoxy-10,7'-(chrysophanol anthrone)-chrysophanol being the most active with IC50 values of 1.17 +/- 0.12 and 4.07 +/- 1.54 mu g/ml, respectively.}, language = {en} } @article{ThinesKummer2013, author = {Thines, Marco and Kummer, Volker}, title = {Diversity and species boundaries in floricolous downy mildews}, series = {Mycological progress : international journal of the German Mycological Society}, volume = {12}, journal = {Mycological progress : international journal of the German Mycological Society}, number = {2}, publisher = {Springer}, address = {Heidelberg}, issn = {1617-416X}, doi = {10.1007/s11557-012-0837-7}, pages = {321 -- 329}, year = {2013}, abstract = {Floricolous downy mildews are a monophyletic group of members of the genus Peronospora (Oomycota, Peronosporales). These downy mildews can be found on a variety of families of the Asteridae, including Asteraceae, Campanulaceae, Dipsacaceae, Lamiaceae, and Orobanchaceae. With the exception of Peronospora radii, which can also cause economically relevant losses, sporulation usually takes place only on floral parts of their hosts. However, only very few specimens of these mostly inconspicuous downy mildews have so far been included in molecular phylogenies. Focusing on Lamiaceae, we have investigated multiple specimens of floricolous downy mildews for elucidating species boundaries and host specificity in this group. Based on both mitochondrial and nuclear loci, it became apparent that phylogenetic lineages in the Lamiaceae seem to be host genus specific and significant sequence diversity could be found between lineages. Based on distinctiveness in both phylogenetic reconstructions and morphology, the downy mildew on flowers of Stachys palustris is introduced as a new species, Peronospora jagei sp. nov., which can be morphologically distinguished from Peronospora stigmaticola by broader and shorter conidiospores. The diversity of the floricolous down mildews might be higher than previously assumed, although specimens from a much broader set of samples will be needed to confirm this view.}, language = {en} } @article{WeisseMoserScheffeletal.2013, author = {Weisse, Thomas and Moser, Michael and Scheffel, Ulrike and Stadler, Peter and Berendonk, Thomas U. and Weithoff, Guntram and Berger, Helmut}, title = {Systematics and species-specific response to pH of Oxytricha acidotolerans sp nov and Urosomoida sp (Ciliophora, Hypotricha) from acid mining lakes}, series = {European journal of protistology}, volume = {49}, journal = {European journal of protistology}, number = {2}, publisher = {Elsevier}, address = {Jena}, issn = {0932-4739}, doi = {10.1016/j.ejop.2012.08.001}, pages = {255 -- 271}, year = {2013}, abstract = {We investigated the morphology, phylogeny of the 18S rDNA, and pH response of Oxytricha acidotolerans sp. nov. and Urosomoida sp. (Ciliophora, Hypotricha) isolated from two chemically similar acid mining lakes (pH similar to 2.6) located at Langau, Austria, and in Lusatia, Germany. Oxytricha acidotolerans sp. nov. from Langau has 18 frontal-ventral-transverse cirri but a very indistinct kinety 3 fragmentation so that the assignment to Oxytricha is uncertain. The somewhat smaller species from Lusatia has a highly variable cirral pattern and the dorsal kineties arranged in the Urosomoida pattern and is, therefore, preliminary designated as Urosomoida sp. The pH response was measured as ciliate growth rates in laboratory experiments at pH ranging from 2.5 to 7.0. Our hypothesis was that the shape of the pH reaction norm would not differ between these closely related (3\% difference in their SSU rDNA) species. Results revealed a broad pH niche for O. acidotolerans, with growth rates peaking at moderately acidic conditions (pH 5.2). Cyst formation was positively and linearly related to pH. Urosomoida sp. was more sensitive to pH and did not survive at circumneutral pH. Accordingly, we reject our hypothesis that similar habitats would harbour ciliate species with virtually identical pH reaction norm.}, language = {en} } @article{FestmanAdamPrattetal.2013, author = {Festman, Yariv and Adam, Jos J. and Pratt, Jay and Fischer, Martin H.}, title = {Continuous hand movement induces a far-hand bias in attentional priority}, series = {Attention, perception, \& psychophysics : AP\&P ; a journal of the Psychonomic Society, Inc.}, volume = {75}, journal = {Attention, perception, \& psychophysics : AP\&P ; a journal of the Psychonomic Society, Inc.}, number = {4}, publisher = {Springer}, address = {New York}, issn = {1943-3921}, doi = {10.3758/s13414-013-0430-4}, pages = {644 -- 649}, year = {2013}, abstract = {Previous research on the interaction between manual action and visual perception has focused on discrete movements or static postures and discovered better performance near the hands (the near-hand effect). However, in everyday behaviors, the hands are usually moving continuously between possible targets. Therefore, the current study explored the effects of continuous hand motion on the allocation of visual attention. Eleven healthy adults performed a visual discrimination task during cyclical concealed hand movements underneath a display. Both the current hand position and its movement direction systematically contributed to participants' visual sensitivity. Discrimination performance increased substantially when the hand was distant from but moving toward the visual probe location (a far-hand effect). Implications of this novel observation are discussed.}, language = {en} } @article{RietschEccardScheffler2013, author = {Rietsch, Katrin and Eccard, Jana and Scheffler, Christiane}, title = {Decreased external skeletal robustness due to reduced physical activity?}, series = {American journal of human biology : the official journal of the Human Biology Council}, volume = {25}, journal = {American journal of human biology : the official journal of the Human Biology Council}, number = {3}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {1042-0533}, doi = {10.1002/ajhb.22389}, pages = {404 -- 410}, year = {2013}, abstract = {Objectives Childhood obesity is a global problem, e.g., due to physical inactivity. External skeletal robustness (Frame-Index) has decreased in German schoolchildren. An association between Frame-Index and physical activity was assumed. Further often body mass index (BMI) is analyzed without reference to bone structure. Therefore, we analyze relationships between Frame-Index, BMI, \% body fat, and physical activity. Methods In a cross-sectional study, 691 German children aged 610 years were investigated. BMI, \% body fat, Frame-Index, total steps p.w., sports club rate p.w., training time p.d., and TV-time p.d. were determined. Results Total steps (P<0.001), BMI (P<0.001), and \% body fat (P=0.024) are positively linked to Frame-Index. Total steps (P<0.001), sports club rate (P=0.001), and training time (P<0.001) are negatively associated with \% body fat. Total steps (P=0.017) are negatively linked to BMI. TV-time is positively related to BMI (P<0.001) and \% body fat (P<0.001). \% Body fat is affected by age (P<0.001), sex (P=0.028), and total steps (P=0.002). BMI is influenced by age (P<0.001), and Frame-Index by sex (P<0.001) and total steps (P=0.029). Principal component analysis indicates an association between BMI and TV-time and Frame-Index and total steps. Conclusions We demonstrate an association between external skeletal robustness and physical activity, which is not captured by in BMI measurements. Children should be physically active in order to maintain skeletal robustness. Am. J. Hum. Biol. 25:404410, 2013.}, language = {en} } @article{Mueller2013, author = {M{\"u}ller, Gesine}, title = {From "The Novel" (1966) to "The Art of the Novel" (2000) readings of Vargas Llosa as Topos of Latin American Disenchantment}, series = {Review: Literature and Arts of the Americas}, volume = {46}, journal = {Review: Literature and Arts of the Americas}, number = {1}, publisher = {Routledge, Taylor \& Francis Group}, address = {Abingdon}, issn = {0890-5762}, doi = {10.1080/08905762.2013.780894}, pages = {20 -- 25}, year = {2013}, language = {en} } @article{KlinkuschKlamroth2013, author = {Klinkusch, Stefan and Klamroth, Tillmann}, title = {Simulations of pump-probe exitations of electronic wave packets for a large qusi-rigid molecular system by means of an extension to the time-dependent configuration interaction singles method}, series = {Journal of theoretical and computational chemistry}, volume = {12}, journal = {Journal of theoretical and computational chemistry}, number = {3}, publisher = {World Scientific}, address = {Singapore}, issn = {0219-6336}, doi = {10.1142/S0219633613500053}, pages = {17}, year = {2013}, abstract = {In this paper, we report simulations of laser-driven many-electron dynamics by means of the time-dependent configuration interaction singles (TD-CIS) approach. Photoionization is included by a heuristic model within calculations employing standard Gaussian basis sets. Benzo[g]-N-methyl-quinolinium-7-hydroxylate (BMQ7H) serves as a test system to generate predefined wave packets, i.e. a superposition between the ground and fifth excited state, in a large molecule. For this molecule, these two states have a very similar geometry, which enables us to use the fixed nuclei approximation. Furthermore, this geometric stability would also prevent a dephasing of the electron wave packet due to nuclear dynamics in an experimental realization of our simulations. We also simulate the possible detection of such a wave packet by ultra short probe laser pulses, i.e. pump-probe spectra.}, language = {en} } @article{LuoYanZhou2013, author = {Luo, Yingyi and Yan, Ming and Zhou, Xiaolin}, title = {Prosodic boundaries delay the processing of upcoming lexical information during silent sentence reading}, series = {Journal of experimental psychology : Learning, memory, and cognition}, volume = {39}, journal = {Journal of experimental psychology : Learning, memory, and cognition}, number = {3}, publisher = {American Psychological Association}, address = {Washington}, issn = {0278-7393}, doi = {10.1037/a0029182}, pages = {915 -- 930}, year = {2013}, abstract = {Prosodic boundaries can be used to guide syntactic parsing in both spoken and written sentence comprehension, but it is unknown whether the processing of prosodic boundaries affects the processing of upcoming lexical information. In 3 eye-tracking experiments, participants read silently sentences that allow for 2 possible syntactic interpretations when there is no comma or other cue specifying which interpretation should be taken. In Experiments 1 and 2, participants heard a low-pass filtered auditory version of the sentence, which provided a prosodic boundary cue prior to each sentence. In Experiment 1, we found that the boundary cue helped syntactic disambiguation after the cue and led to longer fixation durations on regions right before the cue than on identical regions without prosodic boundary information. In Experiments 2 and 3, we used a gaze-contingent display-change paradigm to manipulate the parafoveal visibility of the first constituent character of the target word after the disambiguating position. Results of Experiment 2 showed that previewing the first character significantly reduced the reading time of the target word, but this preview benefit was greatly reduced when the prosodic boundary cue was introduced at this position. In Experiment 3, instead of the acoustic cues, a visually presented comma was inserted at the disambiguating position in each sentence. Results showed that the comma effect on lexical processing was essentially the same as the effect of prosodic boundary cue. These findings demonstrate that processing a prosodic boundary could impair the processing of parafoveal information during sentence reading.}, language = {en} } @article{MassonKliegl2013, author = {Masson, Michael E. J. and Kliegl, Reinhold}, title = {Modulation of additive and interactive effects in lexical decision by Trial History}, series = {Journal of experimental psychology : Learning, memory, and cognition}, volume = {39}, journal = {Journal of experimental psychology : Learning, memory, and cognition}, number = {3}, publisher = {American Psychological Association}, address = {Washington}, issn = {0278-7393}, doi = {10.1037/a0029180}, pages = {898 -- 914}, year = {2013}, abstract = {Additive and interactive effects of word frequency, stimulus quality, and semantic priming have been used to test theoretical claims about the cognitive architecture of word-reading processes. Additive effects among these factors have been taken as evidence for discrete-stage models of word reading. We present evidence from linear mixed-model analyses applied to 2 lexical decision experiments indicating that apparent additive effects can be the product of aggregating over- and underadditive interaction effects that are modulated by recent trial history, particularly the lexical status and stimulus quality of the previous trial's target. Even a simple practice effect expressed as improved response speed across trials was powerfully modulated by the nature of the previous target item. These results suggest that additivity and interaction between factors may reflect trial-to-trial variation in stimulus representations and decision processes rather than fundamental differences in processing architecture.}, language = {en} } @article{LauchtTreutleinBlomeyeretal.2013, author = {Laucht, Manfred and Treutlein, Jens and Blomeyer, Dorothea and Buchmann, Arlette F. and Schmidt, Martin H. and Esser, G{\"u}nter and Jennen-Steinmetz, Christine and Rietschel, Marcella and Banaschewski, Tobias}, title = {Interactive effects of corticotropin-releasing hormone receptor 1 gene and childhood adversity on depressive symptoms in young adults findings from a longitudinal study}, series = {European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology}, volume = {23}, journal = {European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology}, number = {5}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0924-977X}, doi = {10.1016/j.euroneuro.2012.06.002}, pages = {358 -- 367}, year = {2013}, abstract = {Accumulating research suggests a moderating role for the corticotropin-releasing hormone receptor 1 gene (CRHR1) in the association between childhood adversity and adult depression. The present study aims to replicate recent findings using different genetic variants and measures of early adversity assessed both prospectively and retrospectively. Data were collected in the context of an ongoing epidemiological cohort study following the outcome of early risk factors from birth into adulthood. 300 participants (137 males, 163 females) were genotyped for four CRHR1 SNPs (rs7209436, rs110402, rs242924, and rs17689882) and completed the Beck Depression Inventory at ages 19, 22 and 23 years. Childhood adversity was assessed using the Childhood Trauma Questionnaire and by a standardized parent interview yielding an index of family adversity. Our results indicate that CRHR1 and childhood adversity interacted to predict depressive symptoms in young adults. Specifically, we found that the impact of childhood maltreatment on adult depressive symptoms was significantly higher in individuals (i) with two copies of the CRHR1 TAT haplotype, and (ii) homozygous for the G allele of rs17689882. The interaction was demonstrated for exposure to childhood maltreatment as assessed by retrospective self-report, but not to prospectively ascertain objective family adversity. The present study partially replicates recent findings of a CRHR1 by childhood adversity interaction with regard to adult depression highlighting the subjective characteristics of the environmental pathogen that is operative in this interaction.}, language = {en} } @article{ReimThammRolkeetal.2013, author = {Reim, Tina and Thamm, Markus and Rolke, Daniel and Blenau, Wolfgang and Scheiner, Ricarda}, title = {Suitability of three common reference genes for quantitative real-time PCR in honey bees}, series = {Apidologie : a quality journal in bee science}, volume = {44}, journal = {Apidologie : a quality journal in bee science}, number = {3}, publisher = {Springer}, address = {Paris}, issn = {0044-8435}, doi = {10.1007/s13592-012-0184-3}, pages = {342 -- 350}, year = {2013}, abstract = {Honey bees are important model organisms for neurobiology, because they display a large array of behaviors. To link behavior with individual gene function, quantitative polymerase chain reaction is frequently used. Comparing gene expression of different individuals requires data normalization using adequate reference genes. These should ideally be expressed stably throughout lifetime. Unfortunately, this is frequently not the case. We studied how well three commonly used reference genes are suited for this purpose and measured gene expression in the brains of honey bees differing in age and social role. Although rpl32 is used most frequently, it only remains stable in expression between newly emerged bees, nurse-aged bees, and pollen foragers but shows a peak at the age of 12 days. The genes gapdh and ef1 alpha-f1, in contrast, are expressed stably in the brain throughout all age groups except newly emerged bees. According to stability software, gapdh was expressed most stably, followed by rpl32 and ef1 alpha-f1.}, language = {en} } @article{BuergerSobieCannonetal.2013, author = {B{\"u}rger, Gerd and Sobie, S. R. and Cannon, A. J. and Werner, A. T. and Murdock, T. Q.}, title = {Downscaling extremes an intercomparison of multiple methods for future climate}, series = {Journal of climate}, volume = {26}, journal = {Journal of climate}, number = {10}, publisher = {American Meteorological Soc.}, address = {Boston}, issn = {0894-8755}, doi = {10.1175/JCLI-D-12-00249.1}, pages = {3429 -- 3449}, year = {2013}, abstract = {This study follows up on a previous downscaling intercomparison for present climate. Using a larger set of eight methods the authors downscale atmospheric fields representing present (1981-2000) and future (2046-65) conditions, as simulated by six global climate models following three emission scenarios. Local extremes were studied at 20 locations in British Columbia as measured by the same set of 27 indices, ClimDEX, as in the precursor study. Present and future simulations give 2 x 3 x 6 x 8 x 20 x 27 = 155 520 index climatologies whose analysis in terms of mean change and variation is the purpose of this study. The mean change generally reinforces what is to be expected in a warmer climate: that extreme cold events become less frequent and extreme warm events become more frequent, and that there are signs of more frequent precipitation extremes. There is considerable variation, however, about this tendency, caused by the influence of scenario, climate model, downscaling method, and location. This is analyzed using standard statistical techniques such as analysis of variance and multidimensional scaling, along with an assessment of the influence of each modeling component on the overall variation of the simulated change. It is found that downscaling generally has the strongest influence, followed by climate model; location and scenario have only a minor influence. The influence of downscaling could be traced back in part to various issues related to the methods, such as the quality of simulated variability or the dependence on predictors. Using only methods validated in the precursor study considerably reduced the influence of downscaling, underpinning the general need for method verification.}, language = {en} } @article{WiesmeierPrietzelBartholdetal.2013, author = {Wiesmeier, Martin and Prietzel, J{\"o}rg and Barthold, Frauke Katrin and Sp{\"o}rlein, Peter and Geuss, Uwe and Hangen, Edzard and Reischl, Arthur and Schilling, Bernd and von L{\"u}tzow, Margit and K{\"o}gel-Knabner, Ingrid}, title = {Storage and drivers of organic carbon in forest soils of southeast Germany (Bavaria) - Implications for carbon sequestration}, series = {Forest ecology and management}, volume = {295}, journal = {Forest ecology and management}, number = {10}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0378-1127}, doi = {10.1016/j.foreco.2013.01.025}, pages = {162 -- 172}, year = {2013}, abstract = {Temperate forest soils of central Europe are regarded as important pools for soil organic carbon (SOC) and thought to have a high potential for carbon (C) sequestration. However, comprehensive data on total SOC storage, particularly under different forest types, and its drivers is limited. In this study, we analyzed a forest data set of 596 completely sampled soil profiles down to the parent material or to a depth of 1 m within Bavaria in southeast Germany in order to determine representative SOC stocks under different forest types in central Europe and the impact of different environmental parameters. We calculated a total median SOC stock of 9.8 kg m(-2) which is considerably lower compared with many other inventories within central Europe that used modelled instead of measured soil properties. Statistical analyses revealed climate as controlling parameter for the storage of SOC with increasing stocks in cool, humid mountainous regions and a strong decrease in areas with higher temperatures. No significant differences of total SOC storage were found between broadleaf, coniferous and mixed forests. However, coniferous forests stored around 35\% of total SOC in the labile organic layer that is prone to human disturbance, forest fires and rising temperatures. In contrast, mixed and broadleaf forests stored the major part of SOC in the mineral soil. Moreover, these two forest types showed unchanged or even slightly increased mineral SOC stocks with higher temperatures, whereas SOC stocks in mineral soils under coniferous forest were distinctly lower. We conclude that mixed and broadleaf forests are more advantageous for C sequestration than coniferous forests. An intensified incorporation of broadleaf species in extent coniferous forests of Bavaria would prevent substantial SOC losses as a result of rising temperatures in the course of climate change.}, language = {en} } @article{AmourMuttiChristetal.2013, author = {Amour, Frederic and Mutti, Maria and Christ, Nicolas and Immenhauser, Adrian and Benson, Gregory S. and Agar, Susan M. and Tomas, Sara and Kabiri, Lahcen}, title = {Outcrop analog for an oolitic carbonate ramp reservoir a scale-dependent geologic modeling approach based on stratigraphic hierarchy}, series = {AAPG bulletin}, volume = {97}, journal = {AAPG bulletin}, number = {5}, publisher = {American Association of Petroleum Geologists}, address = {Tulsa}, issn = {0149-1423}, doi = {10.1306/10231212039}, pages = {845 -- 871}, year = {2013}, abstract = {Considerable effort has been devoted to the development of simulation algorithms for facies modeling, whereas a discussion of how to combine those techniques has not existed. The integration of multiple geologic data into a three-dimensional model, which requires the combination of simulation techniques, is yet a current challenge for reservoir modeling. This article presents a thought process that guides the acquisition and modeling of geologic data at various scales. Our work is based on outcrop data collected from a Jurassic carbonate ramp located in the High Atlas mountain range of Morocco. The study window is 1 km (0.6 mi) wide and 100 m (328.1 ft) thick. We describe and model the spatial and hierarchical arrangement of carbonate bodies spanning from largest to smallest: (1) stacking pattern of high-frequency depositional sequences, (2) facies association, and (3) lithofacies. Five sequence boundaries were modeled using differential global position system mapping and light detection and ranging data. The surface-based model shows a low-angle profile with modest paleotopographic relief at the inner-to-middle ramp transition. Facies associations were populated using truncated Gaussian simulation to preserve ordered trends between the inner, middle, and outer ramps. At the lithofacies scale, field observations and statistical analysis show a mosaiclike distribution that was simulated using a fully stochastic approach with sequential indicator simulation. This study observes that the use of one single simulation technique is unlikely to correctly model the natural patterns and variability of carbonate rocks. The selection and implementation of different techniques customized for each level of the stratigraphic hierarchy will provide the essential computing flexibility to model carbonate settings. This study demonstrates that a scale-dependent modeling approach should be a common procedure when building subsurface and outcrop models.}, language = {en} } @article{SulpiceNikoloskiTschoepetal.2013, author = {Sulpice, Ronan and Nikoloski, Zoran and Tschoep, Hendrik and Antonio, Carla and Kleessen, Sabrina and Larhlimi, Abdelhalim and Selbig, Joachim and Ishihara, Hirofumi and Gibon, Yves and Fernie, Alisdair R. and Stitt, Mark}, title = {Impact of the Carbon and Nitrogen Supply on Relationships and Connectivity between Metabolism and Biomass in a Broad Panel of Arabidopsis Accessions(1[W][OA])}, series = {Plant physiology : an international journal devoted to physiology, biochemistry, cellular and molecular biology, biophysics and environmental biology of plants}, volume = {162}, journal = {Plant physiology : an international journal devoted to physiology, biochemistry, cellular and molecular biology, biophysics and environmental biology of plants}, number = {1}, publisher = {American Society of Plant Physiologists}, address = {Rockville}, issn = {0032-0889}, doi = {10.1104/pp.112.210104}, pages = {347 -- 363}, year = {2013}, abstract = {Natural genetic diversity provides a powerful tool to study the complex interrelationship between metabolism and growth. Profiling of metabolic traits combined with network-based and statistical analyses allow the comparison of conditions and identification of sets of traits that predict biomass. However, it often remains unclear why a particular set of metabolites is linked with biomass and to what extent the predictive model is applicable beyond a particular growth condition. A panel of 97 genetically diverse Arabidopsis (Arabidopsis thaliana) accessions was grown in near-optimal carbon and nitrogen supply, restricted carbon supply, and restricted nitrogen supply and analyzed for biomass and 54 metabolic traits. Correlation-based metabolic networks were generated from the genotype-dependent variation in each condition to reveal sets of metabolites that show coordinated changes across accessions. The networks were largely specific for a single growth condition. Partial least squares regression from metabolic traits allowed prediction of biomass within and, slightly more weakly, across conditions (cross-validated Pearson correlations in the range of 0.27-0.58 and 0.21-0.51 and P values in the range of <0.001-<0.13 and <0.001-<0.023, respectively). Metabolic traits that correlate with growth or have a high weighting in the partial least squares regression were mainly condition specific and often related to the resource that restricts growth under that condition. Linear mixed-model analysis using the combined metabolic traits from all growth conditions as an input indicated that inclusion of random effects for the conditions improves predictions of biomass. Thus, robust prediction of biomass across a range of conditions requires condition-specific measurement of metabolic traits to take account of environment-dependent changes of the underlying networks.}, language = {en} } @article{BeyeAnniyevCoffeeetal.2013, author = {Beye, Martin and Anniyev, Toyli and Coffee, Ryan and Dell'Angela, Martina and F{\"o}hlisch, Alexander and Gladh, J. and Katayama, T. and Kaya, S. and Krupin, O. and Mogelhoj, A. and Nilsson, A. and Nordlund, D. and Norskov, J. K. and Oberg, H. and Ogasawara, H. and Pettersson, Lars G. M. and Schlotter, W. F. and Sellberg, J. A. and Sorgenfrei, Nomi and Turner, J. J. and Wolf, M. and Wurth, Wilfried and Ostrom, H.}, title = {Selective ultrafast probing of transient hot chemisorbed and precursor States of CO on Ru(0001)}, series = {Physical review letters}, volume = {110}, journal = {Physical review letters}, number = {18}, publisher = {American Physical Society}, address = {College Park}, issn = {0031-9007}, doi = {10.1103/PhysRevLett.110.186101}, pages = {6}, year = {2013}, abstract = {We have studied the femtosecond dynamics following optical laser excitation of CO adsorbed on a Ru surface by monitoring changes in the occupied and unoccupied electronic structure using ultrafast soft x-ray absorption and emission. We recently reported [M. Dell'Angela et al. Science 339, 1302 (2013)] a phonon-mediated transition into a weakly adsorbed precursor state occurring on a time scale of >2 ps prior to desorption. Here we focus on processes within the first picosecond after laser excitation and show that the metal-adsorbate coordination is initially increased due to hot-electron-driven vibrational excitations. This process is faster than, but occurs in parallel with, the transition into the precursor state. With resonant x-ray emission spectroscopy, we probe each of these states selectively and determine the respective transient populations depending on optical laser fluence. Ab initio molecular dynamics simulations of CO adsorbed on Ru(0001) were performed at 1500 and 3000 K providing insight into the desorption process.}, language = {en} } @article{Ganghof2013, author = {Ganghof, Steffen}, title = {Does public reason require super-majoritarian democracy? Liberty, equality, and history in the justification of political institutions}, series = {Politics, philosophy \& economics}, volume = {12}, journal = {Politics, philosophy \& economics}, number = {2}, publisher = {Sage Publ.}, address = {Thousand Oaks}, issn = {1470-594X}, doi = {10.1177/1470594X12447786}, pages = {179 -- 196}, year = {2013}, abstract = {The project of public-reason liberalism faces a basic problem: publicly justified principles are typically too abstract and vague to be directly applied to practical political disputes, whereas applicable specifications of these principles are not uniquely publicly justified. One solution could be a legislative procedure that selects one member from the eligible set of inconclusively justified proposals. Yet if liberal principles are too vague to select sufficiently specific legislative proposals, can they, nevertheless, select specific legislative procedures? Based on the work of Gerald Gaus, this article argues that the only candidate for a conclusively justified decision procedure is a majoritarian or otherwise 'neutral' democracy. If the justification of democracy requires an equality baseline in the design of political regimes and if justifications for departure from this baseline are subject to reasonable disagreement, a majoritarian design is justified by default. Gaus's own preference for super-majoritarian procedures is based on disputable specifications of justified liberal principles. These procedures can only be defended as a sectarian preference if the equality baseline is rejected, but then it is not clear how the set of justifiable political regimes can be restricted to full democracies.}, language = {en} } @article{AnoopPrasadPlessenetal.2013, author = {Anoop, Ambili and Prasad, S. and Plessen, Birgit and Basavaiah, Nathani and Gaye, B. and Naumann, R. and Menzel, P. and Weise, S. and Brauer, Achim}, title = {Palaeoenvironmental implications of evaporative gaylussite crystals from Lonar Lake, central India}, series = {Journal of quaternary science}, volume = {28}, journal = {Journal of quaternary science}, number = {4}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0267-8179}, doi = {10.1002/jqs.2625}, pages = {349 -- 359}, year = {2013}, abstract = {We have undertaken petrographic, mineralogical, geochemical and isotopic investigations on carbonate minerals found within a 10-m-long core from Lonar Lake, central India, with the aim of evaluating their potential as palaeoenvironmental proxies. The core encompasses the entire Holocene and is the first well-dated high-resolution record from central India. While calcite and/or aragonite were found throughout the core, the mineral gaylussite was found only in two specific intervals (46303890 and 2040560 cal a BP). Hydrochemical and isotope data from inflowing streams and lake waters indicate that evaporitic processes play a dominant role in the precipitation of carbonates within this lake. Isotopic (18O and 13C) studies on the evaporative gaylussite crystals and residual bulk carbonates (calcite) from the long core show that evaporation is the major control on 18O enrichment in both the minerals. However, in case of 13C additional mechanisms, for example methanogenesis (gaylussite) and phytoplankton productivity (calcium carbonate), play an additional important role in some intervals. We also discuss the relevance of our investigation for palaeoclimate reconstruction and late Holocene monsoon variability.}, language = {en} } @article{EichmairMetzger2013, author = {Eichmair, Michael and Metzger, Jan}, title = {Large isoperimetric surfaces in initial data sets}, series = {Journal of differential geometry}, volume = {94}, journal = {Journal of differential geometry}, number = {1}, publisher = {International Press of Boston}, address = {Somerville}, issn = {0022-040X}, pages = {159 -- 186}, year = {2013}, abstract = {We study the isoperimetric structure of asymptotically flat Riemannian 3-manifolds (M, g) that are C-0-asymptotic to Schwarzschild of mass m > 0. Refining an argument due to H. Bray, we obtain an effective volume comparison theorem in Schwarzschild. We use it to show that isoperimetric regions exist in (M, g) for all sufficiently large volumes, and that they are close to centered coordinate spheres. This implies that the volume-preserving stable constant mean curvature spheres constructed by G. Huisken and S.-T. Yau as well as R. Ye as perturbations of large centered coordinate spheres minimize area among all competing surfaces that enclose the same volume. This confirms a conjecture of H. Bray. Our results are consistent with the uniqueness results for volume-preserving stable constant mean curvature surfaces in initial data sets obtained by G. Huisken and S.-T. Yau and strengthened by J. Qing and G. Tian. The additional hypotheses that the surfaces be spherical and far out in the asymptotic region in their results are not necessary in our work.}, language = {en} } @article{KlausHoelzelBochetal.2013, author = {Klaus, Valentin H. and H{\"o}lzel, Norbert and Boch, Steffen and M{\"u}ller, Jorg and Socher, Stephanie A. and Prati, Daniel and Fischer, Markus and Kleinebecker, Till}, title = {Direct and indirect associations between plant species richness and productivity in grasslands regional differences preclude simple generalization of productivity-biodiversity relationships}, series = {Preslia : the journal of the Czech Botanical Society}, volume = {85}, journal = {Preslia : the journal of the Czech Botanical Society}, number = {2}, publisher = {Czech Botanical Soc.}, address = {Praha}, issn = {0032-7786}, pages = {97 -- 112}, year = {2013}, abstract = {Plant species richness of permanent grasslands has often been found to be significantly associated with productivity. Concentrations of nutrients in biomass can give further insight into these productivity-plant species richness relationships, e.g. by reflecting land use or soil characteristics. However, the consistency of such relationships across different regions has rarely been taken into account, which might significantly compromise our potential for generalization. We recorded plant species richness and measured above-ground biomass and concentrations of nutrients in biomass in 295 grasslands in three regions in Germany that differ in soil and climatic conditions. Structural equation modelling revealed that nutrient concentrations were mostly indirectly associated with plant species richness via biomass production. However, negative associations between the concentrations of different nutrients and biomass and plant species richness differed considerably among regions. While in two regions, more than 40\% of the variation in plant species richness could be attributed to variation in biomass, K, P. and to some degree also N concentrations, in the third region only 15\% of the variation could be explained in this way. Generally, highest plant species richness was recorded in grasslands where N and P were co-limiting plant growth, in contrast to N or K (co-) limitation. But again, this pattern was not recorded in the third region. While for two regions land-use intensity and especially the application of fertilizers are suggested to be the main drivers causing the observed negative associations with productivity, in the third region the little variance accounted for, low species richness and weak relationships implied that former intensive grassland management, ongoing mineralization of peat and fluctuating water levels in fen grasslands have overruled effects of current land-use intensity and productivity. Finally, we conclude that regional replication is of major importance for studies seeking general insights into productivity-diversity relationships.}, language = {en} } @article{Zimmermann2013, author = {Zimmermann, Andreas}, title = {Palestine and the international criminal court quo vadis? - reach and limits of declarations under article 12(3)}, series = {Journal of international criminal justice}, volume = {11}, journal = {Journal of international criminal justice}, number = {2}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {1478-1387}, doi = {10.1093/jicj/mqt014}, pages = {303 -- 329}, year = {2013}, abstract = {In 2009, 'Palestine' lodged a declaration recognizing the jurisdiction of the ICC under Article 12(3). However, in April 2012, the OTP determined that this declaration had not brought about the result, of providing for the ICC's jurisdiction, pending clarification from the political organs of the UN concerning the legal status of Palestine within the organization. On 29 November 2012, the General Assembly granted Palestine the status of a non-member observer state within the UN framework, thereby fulfilling the condition mentioned by the OTP in April 2012. It is against this background that the article considers the current legal effects of the 2009 Palestinian declaration. In particular, it addresses the issue of whether the declaration, when read in conjunction with the 29 November 2012 decision, possesses retroactive effect, i.e. whether it provides, as claimed, for the Court's temporal jurisdiction from 1 July 2002 onwards or rather starting only from 29 November 2012. ... the current status granted to Palestine by the United Nations General Assembly is that of 'observer', not as a 'Non-member State'. ... [T]his... informs the current legal status of Palestine for the interpretation and application of article 12 [Rome Statute]. ... The Office could in the future consider allegations of crimes committed in Palestine, should competent organs of the United Nations... resolve the legal issue relevant to an assessment of article 12. ... International Criminal Court, Office of the Prosecutor, 'Situation in Palestine', 3 April 2012}, language = {en} } @article{ValoriDemoulinPariatetal.2013, author = {Valori, Gherarod and Demoulin, Pascal and Pariat, E. and Masson, S.}, title = {Accuracy of magnetic energy computations}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {553}, journal = {Astronomy and astrophysics : an international weekly journal}, number = {2}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {0004-6361}, doi = {10.1051/0004-6361/201220982}, pages = {14}, year = {2013}, abstract = {Context. For magnetically driven events, the magnetic energy of the system is the prime energy reservoir that fuels the dynamical evolution. In the solar context, the free energy (i.e., the energy in excess of the potential field energy) is one of the main indicators used in space weather forecasts to predict the eruptivity of active regions. A trustworthy estimation of the magnetic energy is therefore needed in three-dimensional (3D) models of the solar atmosphere, e. g., in coronal fields reconstructions or numerical simulations. Aims. The expression of the energy of a system as the sum of its potential energy and its free energy (Thomson's theorem) is strictly valid when the magnetic field is exactly solenoidal. For numerical realizations on a discrete grid, this property may be only approximately fulfilled. We show that the imperfect solenoidality induces terms in the energy that can lead to misinterpreting the amount of free energy present in a magnetic configuration. Methods. We consider a decomposition of the energy in solenoidal and nonsolenoidal parts which allows the unambiguous estimation of the nonsolenoidal contribution to the energy. We apply this decomposition to six typical cases broadly used in solar physics. We quantify to what extent the Thomson theorem is not satisfied when approximately solenoidal fields are used. Results. The quantified errors on energy vary from negligible to significant errors, depending on the extent of the nonsolenoidal component of the field. We identify the main source of errors and analyze the implications of adding a variable amount of divergence to various solenoidal fields. Finally, we present pathological unphysical situations where the estimated free energy would appear to be negative, as found in some previous works, and we identify the source of this error to be the presence of a finite divergence. Conclusions. We provide a method of quantifying the effect of a finite divergence in numerical fields, together with detailed diagnostics of its sources. We also compare the efficiency of two divergence-cleaning techniques. These results are applicable to a broad range of numerical realizations of magnetic fields.}, language = {en} } @article{Nehring2013, author = {Nehring, Benjamin}, title = {Construction of point processes for classical and quantum gases}, series = {Journal of mathematical physics}, volume = {54}, journal = {Journal of mathematical physics}, number = {5}, publisher = {American Institute of Physics}, address = {Melville}, issn = {0022-2488}, doi = {10.1063/1.4807080}, pages = {11}, year = {2013}, abstract = {We propose a construction of point processes via the method of cluster expansion. The important role of the class of infinitely divisible point processes is noted. Examples are permanental and determinantal processes as well as the classical Gibbs point processes, where the interaction is given by a stable and regular pair potential.}, language = {en} } @article{LammMetzger2013, author = {Lamm, Tobias and Metzger, Jan}, title = {Minimizers of the willmore functional with a small area constraint}, series = {ANNALES DE L INSTITUT HENRI POINCARE-ANALYSE NON LINEAIRE}, volume = {30}, journal = {ANNALES DE L INSTITUT HENRI POINCARE-ANALYSE NON LINEAIRE}, number = {3}, publisher = {Elsevier}, address = {Paris}, issn = {0294-1449}, doi = {10.1016/j.anihpc.2012.10.003}, pages = {497 -- 518}, year = {2013}, abstract = {We show the existence of a smooth spherical surface minimizing the Willmore functional subject to an area constraint in a compact Riemannian three-manifold, provided the area is small enough. Moreover, we partially classify complete surfaces of Willmore type with positive mean curvature in Riemannian three-manifolds.}, language = {en} } @article{AbboudSendPashniaketal.2013, author = {Abboud, Ali and Send, Sebastian and Pashniak, N. and Leitenberger, Wolfram and Ihle, Sebastian and Huth, M. and Hartmann, Robert and Str{\"u}der, Lothar and Pietsch, Ullrich}, title = {Sub-pixel resolution of a pnCCD for X-ray white beam applications}, series = {Journal of instrumentation}, volume = {8}, journal = {Journal of instrumentation}, number = {3}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {1748-0221}, doi = {10.1088/1748-0221/8/05/P05005}, pages = {17}, year = {2013}, abstract = {A new approach to achieve sub-pixel spatial resolution in a pnCCD detector with 75 x 75 mu m(2) pixel size is proposed for X-ray applications in single photon counting mode. The approach considers the energy dependence of the charge cloud created by a single photon and its split probabilities between neighboring pixels of the detector based on a rectangular model for the charge cloud density. For cases where the charge of this cloud becomes distributed over three or four pixels the center position of photon impact can be reconstructed with a precision better than 2 mu m. The predicted charge cloud sizes are tested at selected X-ray fluorescence lines emitting energies between 6.4 keV and 17.4 keV and forming charge clouds with size (rms) varying between 8 mu m and 10 mu m respectively. The 2 mu m enhanced spatial resolution of the pnCCD is verified by means of an x-ray transmission experiment throughout an optical grating.}, language = {en} } @article{MillerSakKirbyetal.2013, author = {Miller, Scott R. and Sak, Peter B. and Kirby, Eric and Bierman, Paul R.}, title = {Neogene rejuvenation of central appalachian topography evidence for differential rock uplift from stream profiles and erosion rates}, series = {Earth \& planetary science letters}, volume = {369}, journal = {Earth \& planetary science letters}, number = {2}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0012-821X}, doi = {10.1016/j.epsl.2013.04.007}, pages = {1 -- 12}, year = {2013}, abstract = {The persistence of topography within ancient orogens remains one of the outstanding questions in landscape evolution. In the eastern North American Appalachians, this question is manifest in the outstanding problem of whether topographic relief is in a quasi-equilibrium state, decaying slowly over many millennia, or whether relief has increased during the late Cenozoic. Here we present quantitative geomorphic data from the nonglaciated portion of the Susquehanna River drainage basin that provide insight into these end-member models. Analysis of channel profiles draining upland catchments in the northern Valley and Ridge, Appalachian Plateau, Blue Ridge, and Piedmont provinces reveals that a large number of streams have well defined knickpoints clustered at 300-600 m elevation but not systematically associated with transitions from weak to resistant substrate. Cosmogenic Be-10 inventories of modern stream sediment indicate that erosion rates are spatially variable, ranging from similar to 5-30 m/Myr above knickpoints to similar to 50-100 m/Myr below knickpoints. Overall, channel gradients, normalized for drainage area, scale linearly with catchment-averaged erosion rates. Collectively, regionally consistent spatial relationships among erosion rate, channel steepness, and knickpoints reveal an ongoing wave of transient channel adjustment to a change in relative base level. Reconstructions of relict channel profiles above knickpoints suggest that higher rates of incision are associated with similar to 100-150 m of relative base level fall that accompanied epierogenic rock uplift rather than a change to a more erosive climate or drainage reorganization. Channel response timescales imply that the onset of relative base level change predates similar to 3.5 Ma and may have begun as early as similar to 15 Ma. We suggest that adjustment of the channel network was likely driven by changes in mantle dynamics along the eastern seaboard of North America during the Neogene.}, language = {en} } @article{EinarssonBahrkeSigurdssonetal.2013, author = {Einarsson, Jon M. and Bahrke, Sven and Sigurdsson, Bjarni Thor and Ng, Chuen-How and Petersen, Petur Henry and Sigurjonsson, Olafur E. and Jonsson, Halldor and Gislason, Johannes and Thormodsson, Finnbogi R. and Peter, Martin G.}, title = {Partially acetylated chitooligosaccharides bind to YKL-40 and stimulate growth of human osteoarthritic chondrocytes}, series = {Biochemical and biophysical research communications}, volume = {434}, journal = {Biochemical and biophysical research communications}, number = {2}, publisher = {Elsevier}, address = {San Diego}, issn = {0006-291X}, doi = {10.1016/j.bbrc.2013.02.122}, pages = {298 -- 304}, year = {2013}, abstract = {Recent evidences indicating that cellular kinase signaling cascades are triggered by oligomers of N-acetylglucosamine (ChOS) and that condrocytes of human osteoarthritic cartilage secrete the inflammation associated chitolectin YKL-40, prompted us to study the binding affinity of partially acetylated ChOS to YKL-40 and their effect on primary chondrocytes in culture. Extensive chitinase digestion and filtration of partially deacetylated chitin yielded a mixture of ChOS (Oligomin(TM)) and further ultrafiltration produced T-ChOS(TM), with substantially smaller fraction of the smallest sugars. YKL-40 binding affinity was determined for the different sized homologues, revealing micromolar affinities of the larger homologues to YKL-40. The response of osteoarthritic chondrocytes to Oligomin(TM) and T-ChOS(TM) was determined, revealing 2- to 3-fold increases in cell number. About 500 mu g/ml was needed for Oligomin(TM) and around five times lower concentration for T-ChOS(TM), higher concentrations abolished this effect for both products. Addition of chitotriose inhibited cellular responses mediated by larger oligosaccharides. These results, and the fact that the partially acetylated T-ChOS(TM) homologues should resist hydrolysis, point towards a new therapeutic concept for treating inflammatory joint diseases.}, language = {en} } @article{ShaydukHerzogBojahretal.2013, author = {Shayduk, Roman and Herzog, Marc and Bojahr, Andre and Schick, Daniel and Gaal, Peter and Leitenberger, Wolfram and Navirian, Hengameh and Sander, Mathias and Goldshteyn, Jevgenij and Vrejoiu, Ionela and Bargheer, Matias}, title = {Direct time-domain sampling of subterahertz coherent acoustic phonon spectra in SrTiO3 using ultrafast x-ray diffraction}, series = {Physical review : B, Condensed matter and materials physics}, volume = {87}, journal = {Physical review : B, Condensed matter and materials physics}, number = {18}, publisher = {American Physical Society}, address = {College Park}, issn = {1098-0121}, doi = {10.1103/PhysRevB.87.184301}, pages = {7}, year = {2013}, abstract = {We synthesize sub-THz longitudinal quasimonochromatic acoustic phonons in a SrTiO3 single crystal using a SrRuO3/SrTiO3 superlattice as an optical-acoustic transducer. The generated acoustic phonon spectrum is determined using ultrafast x-ray diffraction. The analysis of the generated phonon spectrum in the time domain reveals a k-vector dependent phonon lifetime. It is observed that even at sub-THz frequencies the phonon lifetime agrees with the 1/omega(2) power law known from Akhiezer's model for hyper sound attenuation. The observed shift of the synthesized spectrum to the higher q is discussed in the framework of nonlinear effects appearing due to the high amplitude of the synthesized phonons.}, language = {en} } @article{OmranianKlieMuellerRoeberetal.2013, author = {Omranian, Nooshin and Klie, Sebastian and M{\"u}ller-R{\"o}ber, Bernd and Nikoloski, Zoran}, title = {Network-based segmentation of biological multivariate time series}, series = {PLoS one}, volume = {8}, journal = {PLoS one}, number = {5}, publisher = {PLoS}, address = {San Fransisco}, issn = {1932-6203}, doi = {10.1371/journal.pone.0062974}, pages = {10}, year = {2013}, abstract = {Molecular phenotyping technologies (e.g., transcriptomics, proteomics, and metabolomics) offer the possibility to simultaneously obtain multivariate time series (MTS) data from different levels of information processing and metabolic conversions in biological systems. As a result, MTS data capture the dynamics of biochemical processes and components whose couplings may involve different scales and exhibit temporal changes. Therefore, it is important to develop methods for determining the time segments in MTS data, which may correspond to critical biochemical events reflected in the coupling of the system's components. Here we provide a novel network-based formalization of the MTS segmentation problem based on temporal dependencies and the covariance structure of the data. We demonstrate that the problem of partitioning MTS data into k segments to maximize a distance function, operating on polynomially computable network properties, often used in analysis of biological network, can be efficiently solved. To enable biological interpretation, we also propose a breakpoint-penalty (BP-penalty) formulation for determining MTS segmentation which combines a distance function with the number/length of segments. Our empirical analyses of synthetic benchmark data as well as time-resolved transcriptomics data from the metabolic and cell cycles of Saccharomyces cerevisiae demonstrate that the proposed method accurately infers the phases in the temporal compartmentalization of biological processes. In addition, through comparison on the same data sets, we show that the results from the proposed formalization of the MTS segmentation problem match biological knowledge and provide more rigorous statistical support in comparison to the contending state-of-the-art methods.}, language = {en} } @article{NitschkeWangSchmiederetal.2013, author = {Nitschke, Felix and Wang, Peixiang and Schmieder, Peter and Girard, Jean-Marie and Awrey, Donald E. and Wang, Tony and Israelian, Johan and Zhao, XiaoChu and Turnbull, Julie and Heydenreich, Matthias and Kleinpeter, Erich and Steup, Martin and Minassian, Berge A.}, title = {Hyperphosphorylation of glucosyl C6 carbons and altered structure of glycogen in the neurodegenerative epilepsy lafora disease}, series = {Cell metabolism}, volume = {17}, journal = {Cell metabolism}, number = {5}, publisher = {Cell Press}, address = {Cambridge}, issn = {1550-4131}, doi = {10.1016/j.cmet.2013.04.006}, pages = {756 -- 767}, year = {2013}, abstract = {Laforin or malin deficiency causes Lafora disease, characterized by altered glycogen metabolism and teenage-onset neurodegeneration with intractable and invariably fatal epilepsy. Plant starches possess small amounts of metabolically essential monophosphate esters. Glycogen contains similar phosphate amounts, which are thought to originate from a glycogen synthase error side reaction and therefore lack any specific function. Glycogen is also believed to lack monophosphates at glucosyl carbon C6, an essential phosphorylation site in plant starch metabolism. We now show that glycogen phosphorylation is not due to a glycogen synthase side reaction, that C6 is a major glycogen phosphorylation site, and that C6 monophosphates predominate near centers of glycogen molecules and positively correlate with glycogen chain lengths. Laforin or malin deficiency causes C6 hyperphosphorylation, which results in malformed long-chained glycogen that accumulates in many tissues, causing neurodegeneration in brain. Our work advances the understanding of Lafora disease pathogenesis and suggests that glycogen phosphorylation has important metabolic function.}, language = {en} } @article{MulanskyPikovskij2013, author = {Mulansky, Mario and Pikovskij, Arkadij}, title = {Energy spreading in strongly nonlinear disordered lattices}, series = {New journal of physics : the open-access journal for physics}, volume = {15}, journal = {New journal of physics : the open-access journal for physics}, number = {5}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {1367-2630}, doi = {10.1088/1367-2630/15/5/053015}, pages = {23}, year = {2013}, abstract = {We study the scaling properties of energy spreading in disordered strongly nonlinear Hamiltonian lattices. Such lattices consist of nonlinearly coupled local linear or nonlinear oscillators, and demonstrate a rather slow, subdiffusive spreading of initially localized wave packets. We use a fractional nonlinear diffusion equation as a heuristic model of this process, and confirm that the scaling predictions resulting from a self-similar solution of this equation are indeed applicable to all studied cases. We show that the spreading in nonlinearly coupled linear oscillators slows down compared to a pure power law, while for nonlinear local oscillators a power law is valid in the whole studied range of parameters.}, language = {en} } @article{KralemannPikovskijRosenblum2013, author = {Kralemann, Bj{\"o}rn and Pikovskij, Arkadij and Rosenblum, Michael}, title = {Detecting triplet locking by triplet synchronization indices}, series = {Physical review : E, Statistical, nonlinear and soft matter physics}, volume = {87}, journal = {Physical review : E, Statistical, nonlinear and soft matter physics}, number = {5}, publisher = {American Physical Society}, address = {College Park}, issn = {1539-3755}, doi = {10.1103/PhysRevE.87.052904}, pages = {6}, year = {2013}, abstract = {We discuss the effect of triplet synchrony in oscillatory networks. In this state the phases and the frequencies of three coupled oscillators fulfill the conditions of a triplet locking, whereas every pair of systems remains asynchronous. We suggest an easy to compute measure, a triplet synchronization index, which can be used to detect such states from experimental data.}, language = {en} } @article{MirhajBoitRazzaketal.2013, author = {Mirhaj, M. and Boit, Alice and Razzak, M. A. and Wahab, M. A.}, title = {Yield performance comparison between cultures of rice cum prawn (Macrobrachium rosenbergii) and rice cum fish (Cyprinus carpio, Oreochromis niloticus) in North-Eastern Bangladesh}, series = {Aquaculture : an international journal devoted to research on the exploration and improvement of all aquatic food resources, both floristic and faunistic, from freshwater, brackish and marine environment, related directly or indirectly to human consumption}, volume = {392}, journal = {Aquaculture : an international journal devoted to research on the exploration and improvement of all aquatic food resources, both floristic and faunistic, from freshwater, brackish and marine environment, related directly or indirectly to human consumption}, number = {5}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0044-8486}, doi = {10.1016/j.aquaculture.2013.01.038}, pages = {26 -- 33}, year = {2013}, abstract = {Integrated and concurrent cultures in rice fields are a promising approach to sustainable farming as the demand for aquacultural and agricultural products continues to grow while land and water resources become increasingly scarce. Prawn farming mainly takes place in coastal regions in improved extensive to semi-intensive aquacultures but a trend to shift the industry to inland regions has been noticed. This inland study in Northern Bangladesh used different input regimes such as fertilizer and additional feed to compare the performance of prawn and fish in flooded paddy fields in regard to water quality measurements. Maximal net yields and body weight gain with minimized negative impact on water quality were found when initial body weights of prawn were optimized. Regarding yield factors in reference to the reduction of costs due to the avoidance of expensive fertilizer/feed and effort, prawn performed better than integrated fish cultures considering a higher market value of prawn with net yields of up to 97 +/- 55 kg ha(-1) for unfed and 151 +/- 61 kg ha(-1) for fed treatments. Rice yields of up to 4.7 +/- 0.1 t ha(-1) for unfed and 4.4 +/- 0.1 t ha(-1) were achieved for fed treatments. The findings suggest that for small scale farmers, prawn cum rice cultures are an economically profitable and comparatively easily manageable alternative to rice cum fish cultures.}, language = {en} }