@article{RevereyGanzertLischeidetal.2018, author = {Reverey, Florian and Ganzert, Lars and Lischeid, Gunnar and Ulrich, Andreas and Premke, Katrin and Grossart, Hans-Peter}, title = {Dry-wet cycles of kettle hole sediments leave a microbial and biogeochemical legacy}, series = {The science of the total environment : an international journal for scientific research into the environment and its relationship with man}, volume = {627}, journal = {The science of the total environment : an international journal for scientific research into the environment and its relationship with man}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0048-9697}, doi = {10.1016/j.scitotenv.2018.01.220}, pages = {985 -- 996}, year = {2018}, abstract = {Understanding interrelations between an environment's hydrological past and its current biogeochemistry is necessary for the assessment of biogeochemical and microbial responses to changing hydrological conditions. The question how previous dry-wet events determine the contemporary microbial and biogeochemical state is addressed in this study. Therefore, sediments exposed to the atmosphere of areas with a different hydrological past within one kettle hole, i.e. (1) the predominantly inundated pond center, (2) the pond margin frequently desiccated for longer periods and (3) an intermediate zone, were incubated with the same rewetting treatment. Physicochemical and textural characteristics were related to structural microbial parameters regarding carbon and nitrogen turnover, i.e. abundance of bacteria and fungi, denitrifiers (targeted by the nirK und nirS functional genes) and nitrate ammonifiers (targeted by the nrfA functional gene). Our study reveals that, in combination with varying sediment texture, the hydrological history creates distinct microbial habitats with defined boundary conditions within the kettle hole, mainly driven by redox conditions, pH and organic matter (OM) composition. OM mineralization, as indicated by CO2-outgassing, was most efficient in exposed sediments with a less stable hydrological past. The potential for nitrogen retention via nitrate ammonification was highest in the hydrologically rather stable pond center, counteracting nitrogen loss due to denitrification. Therefore, the degree of hydrological stability is an important factor leaving a microbial and biogeochemical legacy, which determines carbon and nitrogen losses from small lentic freshwater systems in the long term run.}, language = {en} } @article{AriasAndresKluemperRojasJimenezetal.2018, author = {Arias-Andres, Maria and Kluemper, Uli and Rojas-Jimenez, Keilor and Grossart, Hans-Peter}, title = {Microplastic pollution increases gene exchange in aquatic ecosystems}, series = {Environmental pollution}, volume = {237}, journal = {Environmental pollution}, publisher = {Elsevier}, address = {Oxford}, issn = {0269-7491}, doi = {10.1016/j.envpol.2018.02.058}, pages = {253 -- 261}, year = {2018}, abstract = {Pollution by microplastics in aquatic ecosystems is accumulating at an unprecedented scale, emerging as a new surface for biofilm formation and gene exchange. In this study, we determined the permissiveness of aquatic bacteria towards a model antibiotic resistance plasmid, comparing communities that form biofilms on microplastics vs. those that are free-living. We used an exogenous and red-fluorescent E. coli donor strain to introduce the green-fluorescent broad-host-range plasmid pKJKS which encodes for trimethoprim resistance. We demonstrate an increased frequency of plasmid transfer in bacteria associated with microplastics compared to bacteria that are free-living or in natural aggregates. Moreover, comparison of communities grown on polycarbonate filters showed that increased gene exchange occurs in a broad range of phylogenetically-diverse bacteria. Our results indicate horizontal gene transfer in this habitat could distinctly affect the ecology of aquatic microbial communities on a global scale. The spread of antibiotic resistance through microplastics could also have profound consequences for the evolution of aquatic bacteria and poses a neglected hazard for human health.}, language = {en} } @article{BalintMartonSchatzetal.2018, author = {Balint, Miklos and Marton, Orsolya and Schatz, Marlene and D{\"u}ring, Rolf-Alexander and Grossart, Hans-Peter}, title = {Proper experimental design requires randomization/balancing of molecular ecology experiments}, series = {Ecology and evolution}, volume = {8}, journal = {Ecology and evolution}, number = {3}, publisher = {Wiley}, address = {Hoboken}, issn = {2045-7758}, doi = {10.1002/ece3.3687}, pages = {1786 -- 1793}, year = {2018}, abstract = {Properly designed (randomized and/or balanced) experiments are standard in ecological research. Molecular methods are increasingly used in ecology, but studies generally do not report the detailed design of sample processing in the laboratory. This may strongly influence the interpretability of results if the laboratory procedures do not account for the confounding effects of unexpected laboratory events. We demonstrate this with a simple experiment where unexpected differences in laboratory processing of samples would have biased results if randomization in DNA extraction and PCR steps do not provide safeguards. We emphasize the need for proper experimental design and reporting of the laboratory phase of molecular ecology research to ensure the reliability and interpretability of results.}, language = {en} } @article{BizicIonescuIonescuGrossart2018, author = {Bizic-Ionescu, Mina and Ionescu, Danny and Grossart, Hans-Peter}, title = {Organic Particles: Heterogeneous Hubs for Microbial Interactions in Aquatic Ecosystems}, series = {Frontiers in microbiology}, volume = {9}, journal = {Frontiers in microbiology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-302X}, doi = {10.3389/fmicb.2018.02569}, pages = {15}, year = {2018}, abstract = {The dynamics and activities of microbes colonizing organic particles (hereafter particles) greatly determine the efficiency of the aquatic carbon pump. Current understanding is that particle composition, structure and surface properties, determined mostly by the forming organisms and organic matter, dictate initial microbial colonization and the subsequent rapid succession events taking place as organic matter lability and nutrient content change with microbial degradation. We applied a transcriptomic approach to assess the role of stochastic events on initial microbial colonization of particles. Furthermore, we asked whether gene expression corroborates rapid changes in carbon-quality. Commonly used size fractionated filtration averages thousands of particles of different sizes, sources, and ages. To overcome this drawback, we used replicate samples consisting each of 3-4 particles of identical source and age and further evaluated the consequences of averaging 10-1000s of particles. Using flow-through rolling tanks we conducted long-term experiments at near in situ conditions minimizing the biasing effects of closed incubation approaches often referred to as "the bottle-effect." In our open flow-through rolling tank system, however, active microbial communities were highly heterogeneous despite an identical particle source, suggesting random initial colonization. Contrasting previous reports using closed incubation systems, expression of carbon utilization genes didn't change after 1 week of incubation. Consequently, we suggest that in nature, changes in particle-associated community related to carbon availability are much slower (days to weeks) due to constant supply of labile, easily degradable organic matter. Initial, random particle colonization seems to be subsequently altered by multiple organismic interactions shaping microbial community interactions and functional dynamics. Comparative analysis of thousands particles pooled togethers as well as pooled samples suggests that mechanistic studies of microbial dynamics should be done on single particles. The observed microbial heterogeneity and inter-organismic interactions may have important implications for evolution and biogeochemistry in aquatic systems.}, language = {en} } @article{BachmannHeimbachHassenruecketal.2018, author = {Bachmann, Jennifer and Heimbach, Tabea and Hassenr{\"u}ck, Christiane and Kopprio, German A. and Iversen, Morten Hvitfeldt and Grossart, Hans-Peter and G{\"a}rdes, Astrid}, title = {Environmental Drivers of Free-Living vs. Particle-Attached Bacterial Community Composition in the Mauritania Upwelling System}, series = {Frontiers in microbiology}, volume = {9}, journal = {Frontiers in microbiology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-302X}, doi = {10.3389/fmicb.2018.02836}, pages = {13}, year = {2018}, abstract = {Saharan dust input and seasonal upwelling along North-West Africa provide a model system for studying microbial processes related to the export and recycling of nutrients. This study offers the first molecular characterization of prokaryotic particle-attached (PA; > 3.0 mu m) and free-living (FL; 0.2-3.0 mu m) players in this important ecosystem during August 2016. Environmental drivers for alpha-diversity, bacterial community composition, and differences between FL and PA fractions were identified. The ultra-oligotrophic waters off Senegal were dominated by Cyanobacteria while higher relative abundances of Alphaproteobacteria, Bacteroidetes, Verrucomicrobia, and Planctomycetes (known particle-degraders) occurred in the upwelling area. Temperature, proxy for different water masses, was the best predictor for changes in FL communities. PA community variation was best explained by temperature and ammonium. Bray Curtis dissimilarities between FL and PA were generally very high and correlated with temperature and salinity in surface waters. Greatest similarities between FL and PA occurred at the deep chlorophyll maximum, where bacterial substrate availability was likely highest. This indicates that environmental drivers do not only influence changes among FL and PA communities but also differences between them. This could provide an explanation for contradicting results obtained by different studies regarding the dissimilarity/similarity between FL and PA communities and their biogeochemical functions.}, language = {en} } @article{VandenWyngaertRojasJimenezSetoetal.2018, author = {Van den Wyngaert, Silke and Rojas-Jimenez, Keilor and Seto, Kensuke and Kagami, Maiko and Grossart, Hans-Peter}, title = {Diversity and Hidden Host Specificity of Chytrids Infecting Colonial Volvocacean Algae}, series = {Journal of Eukaryotic Microbiology}, volume = {65}, journal = {Journal of Eukaryotic Microbiology}, number = {6}, publisher = {Wiley}, address = {Hoboken}, issn = {1066-5234}, doi = {10.1111/jeu.12632}, pages = {870 -- 881}, year = {2018}, abstract = {Chytrids are zoosporic fungi that play an important, but yet understudied, ecological role in aquatic ecosystems. Many chytrid species have been morphologically described as parasites on phytoplankton. However, the majority of them have rarely been isolated and lack DNA sequence data. In this study we isolated and cultivated three parasitic chytrids, infecting a common volvocacean host species, Yamagishiella unicocca. To identify the chytrids, we characterized morphology and life cycle, and analyzed phylogenetic relationships based on 18S and 28S rDNA genes. Host range and specificity of the chytrids was determined by cross-infection assays with host strains, characterized by rbcL and ITS markers. We were able to confirm the identity of two chytrid strains as Endocoenobium eudorinae Ingold and Dangeardia mamillata Schroder and described the third chytrid strain as Algomyces stechlinensis gen. et sp. nov. The three chytrids were assigned to novel and phylogenetically distant clades within the phylum Chytridiomycota, each exhibiting different host specificities. By integrating morphological and molecular data of both the parasitic chytrids and their respective host species, we unveiled cryptic host-parasite associations. This study highlights that a high prevalence of (pseudo)cryptic diversity requires molecular characterization of both phytoplankton host and parasitic chytrid to accurately identify and compare host range and specificity, and to study phytoplankton-chytrid interactions in general.}, language = {en} } @article{AriasAndresKettnerMikietal.2018, author = {Arias Andr{\´e}s, Mar{\´i}a de Jes{\´u}s and Kettner, Marie Therese and Miki, Takeshi and Grossart, Hans-Peter}, title = {Microplastics: New substrates for heterotrophic activity contribute to altering organic matter cycles in aquatic ecosystems}, series = {The science of the total environment : an international journal for scientific research into the environment and its relationship with man}, volume = {635}, journal = {The science of the total environment : an international journal for scientific research into the environment and its relationship with man}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0048-9697}, doi = {10.1016/j.scitotenv.2018.04.199}, pages = {1152 -- 1159}, year = {2018}, abstract = {Heterotrophic microbes with the capability to process considerable amounts of organic matter can colonize microplastic particles (MP) in aquatic ecosystems. Weather colonization of microorganisms on MP will alter ecological niche and functioning of microbial communities remains still unanswered. Therefore, we compared the functional diversity of biofilms on microplastics when incubated in three lakes in northeastern Germany differing in trophy and limnological features. For all lakes, we compared heterotrophic activities of MP biofilms with those of microorganisms in the surrounding water by using Biolog (R) EcoPlates and assessed their oxygen consumption in microcosm assays with and without MP. The present study found that the total biofilm biomass was higher in the oligo-mesotrophic and dystrophic lakes than in the eutrophic lake. In all lakes, functional diversity profiles of MP biofilms consistently differed from those in the surrounding water. However, solely in the oligo-mesotrophic lake MP biofilms had a higher functional richness compared to the ambient water. These results demonstrate that the functionality and hence the ecological role of MP-associated microbial communities are context-dependent, i.e. different environments lead to substantial changes in biomass build up and heterotrophic activities of MP biofilms. We propose that MP surfaces act as new niches for aquatic microorganisms and that the constantly increasing MP pollution has the potential to globally impact carbon dynamics of pelagic environments by altering heterotrophic activities. (C) 2018 Elsevier B.V. All rights reserved.}, language = {en} } @article{MantzoukiBekliogluBrookesetal.2018, author = {Mantzouki, Evanthia and Beklioglu, Meryem and Brookes, Justin D. and Domis, Lisette Nicole de Senerpont and Dugan, Hilary A. and Doubek, Jonathan P. and Grossart, Hans-Peter and Nejstgaard, Jens C. and Pollard, Amina I. and Ptacnik, Robert and Rose, Kevin C. and Sadro, Steven and Seelen, Laura and Skaff, Nicholas K. and Teubner, Katrin and Weyhenmeyer, Gesa A. and Ibelings, Bastiaan W.}, title = {Snapshot surveys for lake monitoring, more than a shot in the dark}, series = {Frontiers in Ecology and Evolution}, volume = {6}, journal = {Frontiers in Ecology and Evolution}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {2296-701X}, doi = {10.3389/fevo.2018.00201}, pages = {5}, year = {2018}, language = {en} } @article{MantzoukiCampbellvanLoonetal.2018, author = {Mantzouki, Evanthia and Campbell, James and van Loon, Emiel and Visser, Petra and Konstantinou, Iosif and Antoniou, Maria and Giuliani, Gregory and Machado-Vieira, Danielle and de Oliveira, Alinne Gurjao and Maronic, Dubravka Spoljaric and Stevic, Filip and Pfeiffer, Tanja Zuna and Vucelic, Itana Bokan and Zutinic, Petar and Udovic, Marija Gligora and Plenkovic-Moraj, Andelka and Tsiarta, Nikoletta and Blaha, Ludek and Geris, Rodan and Frankova, Marketa and Christoffersen, Kirsten Seestern and Warming, Trine Perlt and Feldmann, Tonu and Laas, Alo and Panksep, Kristel and Tuvikene, Lea and Kangro, Kersti and Haggqvist, Kerstin and Salmi, Pauliina and Arvola, Lauri and Fastner, Jutta and Straile, Dietmar and Rothhaupt, Karl-Otto and Fonvielle, Jeremy Andre and Grossart, Hans-Peter and Avagianos, Christos and Kaloudis, Triantafyllos and Triantis, Theodoros and Zervou, Sevasti-Kiriaki and Hiskia, Anastasia and Gkelis, Spyros and Panou, Manthos and McCarthy, Valerie and Perello, Victor C. and Obertegger, Ulrike and Boscaini, Adriano and Flaim, Giovanna and Salmaso, Nico and Cerasino, Leonardo and Koreiviene, Judita and Karosiene, Jurate and Kasperoviciene, Jurate and Savadova, Ksenija and Vitonyte, Irma and Haande, Sigrid and Skjelbred, Birger and Grabowska, Magdalena and Karpowicz, Maciej and Chmura, Damian and Nawrocka, Lidia and Kobos, Justyna and Mazur-Marzec, Hanna and Alcaraz-Parraga, Pablo and Wilk-Wozniak, Elzbieta and Krzton, Wojciech and Walusiak, Edward and Gagala, Ilona and Mankiewicz-Boczek, Joana and Toporowska, Magdalena and Pawlik-Skowronska, Barbara and Niedzwiecki, Michal and Peczula, Wojciech and Napiorkowska-Krzebietke, Agnieszka and Dunalska, Julita and Sienska, Justyna and Szymanski, Daniel and Kruk, Marek and Budzynska, Agnieszka and Goldyn, Ryszard and Kozak, Anna and Rosinska, Joanna and Szelag-Wasielewska, Elzbieta and Domek, Piotr and Jakubowska-Krepska, Natalia and Kwasizur, Kinga and Messyasz, Beata and Pelechata, Aleksandra and Pelechaty, Mariusz and Kokocinski, Mikolaj and Madrecka, Beata and Kostrzewska-Szlakowska, Iwona and Frak, Magdalena and Bankowska-Sobczak, Agnieszka and Wasilewicz, Michal and Ochocka, Agnieszka and Pasztaleniec, Agnieszka and Jasser, Iwona and Antao-Geraldes, Ana M. and Leira, Manel and Hernandez, Armand and Vasconcelos, Vitor and Morais, Joao and Vale, Micaela and Raposeiro, Pedro M. and Goncalves, Vitor and Aleksovski, Boris and Krstic, Svetislav and Nemova, Hana and Drastichova, Iveta and Chomova, Lucia and Remec-Rekar, Spela and Elersek, Tina and Delgado-Martin, Jordi and Garcia, David and Luis Cereijo, Jose and Goma, Joan and Carmen Trapote, Mari and Vegas-Vilarrubia, Teresa and Obrador, Biel and Garcia-Murcia, Ana and Real, Monserrat and Romans, Elvira and Noguero-Ribes, Jordi and Parreno Duque, David and Fernandez-Moran, Elisabeth and Ubeda, Barbara and Angel Galvez, Jose and Marce, Rafael and Catalan, Nuria and Perez-Martinez, Carmen and Ramos-Rodriguez, Eloisa and Cillero-Castro, Carmen and Moreno-Ostos, Enrique and Maria Blanco, Jose and Rodriguez, Valeriano and Juan Montes-Perez, Jorge and Palomino, Roberto L. and Rodriguez-Perez, Estela and Carballeira, Rafael and Camacho, Antonio and Picazo, Antonio and Rochera, Carlos and Santamans, Anna C. and Ferriol, Carmen and Romo, Susana and Soria, Juan Miguel and Hansson, Lars-Anders and Urrutia-Cordero, Pablo and Ozen, Arda and Bravo, Andrea G. and Buck, Moritz and Colom-Montero, William and Mustonen, Kristiina and Pierson, Don and Yang, Yang and Verspagen, Jolanda M. H. and Domis, Lisette N. de Senerpont and Seelen, Laura and Teurlincx, Sven and Verstijnen, Yvon and Lurling, Miquel and Maliaka, Valentini and Faassen, Elisabeth J. and Latour, Delphine and Carey, Cayelan C. and Paerl, Hans W. and Torokne, Andrea and Karan, Tunay and Demir, Nilsun and Beklioglu, Meryem and Filiz, Nur and Levi, Eti E. and Iskin, Ugur and Bezirci, Gizem and Tavsanoglu, Ulku Nihan and Celik, Kemal and Ozhan, Koray and Karakaya, Nusret and Kocer, Mehmet Ali Turan and Yilmaz, Mete and Maraslioglu, Faruk and Fakioglu, Ozden and Soylu, Elif Neyran and Yagci, Meral Apaydin and Cinar, Sakir and Capkin, Kadir and Yagci, Abdulkadir and Cesur, Mehmet and Bilgin, Fuat and Bulut, Cafer and Uysal, Rahmi and Koker, Latife and Akcaalan, Reyhan and Albay, Meric and Alp, Mehmet Tahir and Ozkan, Korhan and Sevindik, Tugba Ongun and Tunca, Hatice and Onem, Burcin and Richardson, Jessica and Edwards, Christine and Bergkemper, Victoria and Beirne, Eilish and Cromie, Hannah and Ibelings, Bastiaan W.}, title = {Data Descriptor: A European Multi Lake Survey dataset of environmental variables, phytoplankton pigments and cyanotoxins}, series = {Scientific Data}, volume = {5}, journal = {Scientific Data}, publisher = {Nature Publ. Group}, address = {London}, issn = {2052-4463}, doi = {10.1038/sdata.2018.226}, pages = {13}, year = {2018}, abstract = {Under ongoing climate change and increasing anthropogenic activity, which continuously challenge ecosystem resilience, an in-depth understanding of ecological processes is urgently needed. Lakes, as providers of numerous ecosystem services, face multiple stressors that threaten their functioning. Harmful cyanobacterial blooms are a persistent problem resulting from nutrient pollution and climate-change induced stressors, like poor transparency, increased water temperature and enhanced stratification. Consistency in data collection and analysis methods is necessary to achieve fully comparable datasets and for statistical validity, avoiding issues linked to disparate data sources. The European Multi Lake Survey (EMLS) in summer 2015 was an initiative among scientists from 27 countries to collect and analyse lake physical, chemical and biological variables in a fully standardized manner. This database includes in-situ lake variables along with nutrient, pigment and cyanotoxin data of 369 lakes in Europe, which were centrally analysed in dedicated laboratories. Publishing the EMLS methods and dataset might inspire similar initiatives to study across large geographic areas that will contribute to better understanding lake responses in a changing environment.}, language = {en} } @article{DarwallBremerichDeWeveretal.2018, author = {Darwall, William and Bremerich, Vanessa and De Wever, Aaike and Dell, Anthony I. and Freyhof, Joerg and Gessner, Mark O. and Grossart, Hans-Peter and Harrison, Ian and Irvine, Ken and J{\"a}hnig, Sonja C. and Jeschke, Jonathan M. and Lee, Jessica J. and Lu, Cai and Lewandowska, Aleksandra M. and Monaghan, Michael T. and Nejstgaard, Jens C. and Patricio, Harmony and Schmidt-Kloiber, Astrid and Stuart, Simon N. and Thieme, Michele and Tockner, Klement and Turak, Eren and Weyl, Olaf}, title = {The alliance for freshwater life}, series = {Aquatic Conservation: Marine and Freshwater Ecosystems}, volume = {28}, journal = {Aquatic Conservation: Marine and Freshwater Ecosystems}, number = {4}, publisher = {Wiley}, address = {Hoboken}, issn = {1052-7613}, doi = {10.1002/aqc.2958}, pages = {1015 -- 1022}, year = {2018}, abstract = {1. Global pressures on freshwater ecosystems are high and rising. Viewed primarily as a resource for humans, current practices of water use have led to catastrophic declines in freshwater species and the degradation of freshwater ecosystems, including their genetic and functional diversity. Approximately three-quarters of the world's inland wetlands have been lost, one-third of the 28 000 freshwater species assessed for the International Union for Conservation of Nature (IUCN) Red List are threatened with extinction, and freshwater vertebrate populations are undergoing declines that are more rapid than those of terrestrial and marine species. This global loss continues unchecked, despite the importance of freshwater ecosystems as a source of clean water, food, livelihoods, recreation, and inspiration. 2. The causes of these declines include hydrological alterations, habitat degradation and loss, overexploitation, invasive species, pollution, and the multiple impacts of climate change. Although there are policy initiatives that aim to protect freshwater life, these are rarely implemented with sufficient conviction and enforcement. Policies that focus on the development and management of fresh waters as a resource for people almost universally neglect the biodiversity that they contain. 3. Here we introduce the Alliance for Freshwater Life, a global initiative, uniting specialists in research, data synthesis, conservation, education and outreach, and policymaking. This expert network aims to provide the critical mass required for the effective representation of freshwater biodiversity at policy meetings, to develop solutions balancing the needs of development and conservation, and to better convey the important role freshwater ecosystems play in human well-being. Through this united effort we hope to reverse this tide of loss and decline in freshwater biodiversity. We introduce several short- and medium-term actions as examples for making positive change, and invite individuals, organizations, authorities, and governments to join the Alliance for Freshwater Life.}, language = {en} } @article{GoeritzBergerGegeetal.2018, author = {G{\"o}ritz, Anna and Berger, Stella A. and Gege, Peter and Grossart, Hans-Peter and Nejstgaard, Jens C. and Riedel, Sebastian and R{\"o}ttgers, R{\"u}diger and Utschig, Christian}, title = {Retrieval of water constituents from hyperspectral in-situ measurements under variable cloud cover}, series = {Remote sensing / Molecular Diversity Preservation International (MDPI)}, volume = {10}, journal = {Remote sensing / Molecular Diversity Preservation International (MDPI)}, number = {2}, publisher = {MDPI}, address = {Basel}, issn = {2072-4292}, doi = {10.3390/rs10020181}, pages = {19}, year = {2018}, abstract = {Remote sensing and field spectroscopy of natural waters is typically performed under clear skies, low wind speeds and low solar zenith angles. Such measurements can also be made, in principle, under clouds and mixed skies using airborne or in-situ measurements; however, variable illumination conditions pose a challenge to data analysis. In the present case study, we evaluated the inversion of hyperspectral in-situ measurements for water constituent retrieval acquired under variable cloud cover. First, we studied the retrieval of Chlorophyll-a (Chl-a) concentration and colored dissolved organic matter (CDOM) absorption from in-water irradiance measurements. Then, we evaluated the errors in the retrievals of the concentration of total suspended matter (TSM), Chl-a and the absorption coefficient of CDOM from above-water reflectance measurements due to highly variable reflections at the water surface. In order to approximate cloud reflections, we extended a recent three-component surface reflectance model for cloudless atmospheres by a constant offset and compared different surface reflectance correction procedures. Our findings suggest that in-water irradiance measurements may be used for the analysis of absorbing compounds even under highly variable weather conditions. The extended surface reflectance model proved to contribute to the analysis of above-water reflectance measurements with respect to Chl-a and TSM. Results indicate the potential of this approach for all-weather monitoring.}, language = {en} } @article{CuadratIonescuDavilaetal.2018, author = {Cuadrat, Rafael R. C. and Ionescu, Danny and Davila, Alberto M. R. and Grossart, Hans-Peter}, title = {Recovering genomics clusters of secondary metabolites from lakes using genome-resolved metagenomics}, series = {Frontiers in microbiology}, volume = {9}, journal = {Frontiers in microbiology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-302X}, doi = {10.3389/fmicb.2018.00251}, pages = {13}, year = {2018}, abstract = {Metagenomic approaches became increasingly popular in the past decades due to decreasing costs of DNA sequencing and bioinformatics development. So far, however, the recovery of long genes coding for secondary metabolites still represents a big challenge. Often, the quality of metagenome assemblies is poor, especially in environments with a high microbial diversity where sequence coverage is low and complexity of natural communities high. Recently, new and improved algorithms for binning environmental reads and contigs have been developed to overcome such limitations. Some of these algorithms use a similarity detection approach to classify the obtained reads into taxonomical units and to assemble draft genomes. This approach, however, is quite limited since it can classify exclusively sequences similar to those available (and well classified) in the databases. In this work, we used draft genomes from Lake Stechlin, north-eastern Germany, recovered by MetaBat, an efficient binning tool that integrates empirical probabilistic distances of genome abundance, and tetranucleotide frequency for accurate metagenome binning. These genomes were screened for secondary metabolism genes, such as polyketide synthases (PKS) and non-ribosomal peptide synthases (NRPS), using the Anti-SMASH and NAPDOS workflows. With this approach we were able to identify 243 secondary metabolite clusters from 121 genomes recovered from our lake samples. A total of 18 NRPS, 19 PKS, and 3 hybrid PKS/NRPS clusters were found. In addition, it was possible to predict the partial structure of several secondary metabolite clusters allowing for taxonomical classifications and phylogenetic inferences. Our approach revealed a high potential to recover and study secondary metabolites genes from any aquatic ecosystem.}, language = {en} } @article{LiemohnMcColloughJordanovaetal.2018, author = {Liemohn, Michael W. and McCollough, James P. and Jordanova, Vania K. and Ngwira, Chigomezyo M. and Morley, Steven K. and Cid, Consuelo and Tobiska, W. Kent and Wintoft, Peter and Ganushkina, Natalia Yu and Welling, Daniel T. and Bingham, Suzy and Balikhin, Michael A. and Opgenoorth, Hermann J. and Engel, Miles A. and Weigel, Robert S. and Singer, Howard J. and Buresova, Dalia and Bruinsma, Sean and Zhelavskaya, Irina and Shprits, Yuri and Vasile, Ruggero}, title = {Model Evaluation Guidelines for Geomagnetic Index Predictions}, series = {Space Weather: The International Journal of Research and Applications}, volume = {16}, journal = {Space Weather: The International Journal of Research and Applications}, number = {12}, publisher = {American Geophysical Union}, address = {Washington}, issn = {1542-7390}, doi = {10.1029/2018SW002067}, pages = {2079 -- 2102}, year = {2018}, abstract = {Geomagnetic indices are convenient quantities that distill the complicated physics of some region or aspect of near-Earth space into a single parameter. Most of the best-known indices are calculated from ground-based magnetometer data sets, such as Dst, SYM-H, Kp, AE, AL, and PC. Many models have been created that predict the values of these indices, often using solar wind measurements upstream from Earth as the input variables to the calculation. This document reviews the current state of models that predict geomagnetic indices and the methods used to assess their ability to reproduce the target index time series. These existing methods are synthesized into a baseline collection of metrics for benchmarking a new or updated geomagnetic index prediction model. These methods fall into two categories: (1) fit performance metrics such as root-mean-square error and mean absolute error that are applied to a time series comparison of model output and observations and (2) event detection performance metrics such as Heidke Skill Score and probability of detection that are derived from a contingency table that compares model and observation values exceeding (or not) a threshold value. A few examples of codes being used with this set of metrics are presented, and other aspects of metrics assessment best practices, limitations, and uncertainties are discussed, including several caveats to consider when using geomagnetic indices. Plain Language Summary One aspect of space weather is a magnetic signature across the surface of the Earth. The creation of this signal involves nonlinear interactions of electromagnetic forces on charged particles and can therefore be difficult to predict. The perturbations that space storms and other activity causes in some observation sets, however, are fairly regular in their pattern. Some of these measurements have been compiled together into a single value, a geomagnetic index. Several such indices exist, providing a global estimate of the activity in different parts of geospace. Models have been developed to predict the time series of these indices, and various statistical methods are used to assess their performance at reproducing the original index. Existing studies of geomagnetic indices, however, use different approaches to quantify the performance of the model. This document defines a standardized set of statistical analyses as a baseline set of comparison tools that are recommended to assess geomagnetic index prediction models. It also discusses best practices, limitations, uncertainties, and caveats to consider when conducting a model assessment.}, language = {en} } @article{GebserKaminskiKaufmannetal.2018, author = {Gebser, Martin and Kaminski, Roland and Kaufmann, Benjamin and Schaub, Torsten}, title = {Multi-shot ASP solving with clingo}, series = {Theory and practice of logic programming}, volume = {19}, journal = {Theory and practice of logic programming}, number = {1}, publisher = {Cambridge Univ. Press}, address = {New York}, issn = {1471-0684}, doi = {10.1017/S1471068418000054}, pages = {27 -- 82}, year = {2018}, abstract = {We introduce a new flexible paradigm of grounding and solving in Answer Set Programming (ASP), which we refer to as multi-shot ASP solving, and present its implementation in the ASP system clingo. Multi-shot ASP solving features grounding and solving processes that deal with continuously changing logic programs. In doing so, they remain operative and accommodate changes in a seamless way. For instance, such processes allow for advanced forms of search, as in optimization or theory solving, or interaction with an environment, as in robotics or query answering. Common to them is that the problem specification evolves during the reasoning process, either because data or constraints are added, deleted, or replaced. This evolutionary aspect adds another dimension to ASP since it brings about state changing operations. We address this issue by providing an operational semantics that characterizes grounding and solving processes in multi-shot ASP solving. This characterization provides a semantic account of grounder and solver states along with the operations manipulating them. The operative nature of multi-shot solving avoids redundancies in relaunching grounder and solver programs and benefits from the solver's learning capacities. clingo accomplishes this by complementing ASP's declarative input language with control capacities. On the declarative side, a new directive allows for structuring logic programs into named and parameterizable subprograms. The grounding and integration of these subprograms into the solving process is completely modular and fully controllable from the procedural side. To this end, clingo offers a new application programming interface that is conveniently accessible via scripting languages. By strictly separating logic and control, clingo also abolishes the need for dedicated systems for incremental and reactive reasoning, like iclingo and oclingo, respectively, and its flexibility goes well beyond the advanced yet still rigid solving processes of the latter.}, language = {en} } @article{WoodfieldHorneGlauertetal.2018, author = {Woodfield, Emma E. and Horne, Richard B. and Glauert, S. A. and Menietti, J. D. and Shprits, Yuri and Kurth, William S.}, title = {Formation of electron radiation belts at Saturn by Z-mode wave acceleration}, series = {Nature Communications}, volume = {9}, journal = {Nature Communications}, publisher = {Nature Publ. Group}, address = {London}, issn = {2041-1723}, doi = {10.1038/s41467-018-07549-4}, pages = {7}, year = {2018}, abstract = {At Saturn electrons are trapped in the planet's magnetic field and accelerated to relativistic energies to form the radiation belts, but how this dramatic increase in electron energy occurs is still unknown. Until now the mechanism of radial diffusion has been assumed but we show here that in-situ acceleration through wave particle interactions, which initial studies dismissed as ineffectual at Saturn, is in fact a vital part of the energetic particle dynamics there. We present evidence from numerical simulations based on Cassini spacecraft data that a particular plasma wave, known as Z-mode, accelerates electrons to MeV energies inside 4 RS (1 RS = 60,330 km) through a Doppler shifted cyclotron resonant interaction. Our results show that the Z-mode waves observed are not oblique as previously assumed and are much better accelerators than O-mode waves, resulting in an electron energy spectrum that closely approaches observed values without any transport effects included.}, language = {en} } @article{ZhuShpritsChenetal.2018, author = {Zhu, Hui and Shprits, Yuri and Chen, Lunjin and Liu, Xu and Kellerman, Adam C.}, title = {An event on simultaneous amplification of exohiss and chorus waves associated with electron density enhancements}, series = {Journal of geophysical research : Space physics}, volume = {123}, journal = {Journal of geophysical research : Space physics}, number = {11}, publisher = {American Geophysical Union}, address = {Washington}, issn = {2169-9380}, doi = {10.1029/2017JA025023}, pages = {8958 -- 8968}, year = {2018}, abstract = {Whistler mode exohiss are the structureless hiss waves observed outside the plasma pause with featured equatorward Poynting flux. An event of the amplification of exohiss as well as chorus waves was recorded by Van Allen Probes during the recovery phase of a weak geomagnetic storm. Amplitudes of both types of the waves showed a significant increase at the regions of electron density enhancements. It is found that the electrons resonant with exohiss and chorus showed moderate pitch angle anisotropies. The ratio of the number of electrons resonating with exohiss to total electron number presented in-phase correlation with density variations, which suggests that exohiss can be amplified due to electron density enhancement in terms of cyclotron instability. The calculation of linear growth rates further supports above conclusion. We suggest that exohiss waves have potential to become more significant due to the background plasma fluctuation.}, language = {en} } @article{DuyHeidbuechelMeyeretal.2018, author = {Duy, Nguyen Le and Heidb{\"u}chel, Ingo and Meyer, Hanno and Merz, Bruno and Apel, Heiko}, title = {What controls the stable isotope composition of precipitation in the Mekong Delta?}, series = {Hydrology and earth system sciences : HESS}, volume = {22}, journal = {Hydrology and earth system sciences : HESS}, number = {2}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1027-5606}, doi = {10.5194/hess-22-1239-2018}, pages = {1239 -- 1262}, year = {2018}, abstract = {This study analyzes the influence of local and regional climatic factors on the stable isotopic composition of rainfall in the Vietnamese Mekong Delta (VMD) as part of the Asian monsoon region. It is based on 1.5 years of weekly rainfall samples. In the first step, the isotopic composition of the samples is analyzed by local meteoric water lines (LMWLs) and single-factor linear correlations. Additionally, the contribution of several regional and local factors is quantified by multiple linear regression (MLR) of all possible factor combinations and by relative importance analysis. This approach is novel for the interpretation of isotopic records and enables an objective quantification of the explained variance in isotopic records for individual factors. In this study, the local factors are extracted from local climate records, while the regional factors are derived from atmospheric backward trajectories of water particles. The regional factors, i.e., precipitation, temperature, relative humidity and the length of backward trajectories, are combined with equivalent local climatic parameters to explain the response variables delta O-18, delta H-2, and d-excess of precipitation at the station of measurement. The results indicate that (i) MLR can better explain the isotopic variation in precipitation (R-2 = 0.8) compared to single-factor linear regression (R-2 = 0.3); (ii) the isotopic variation in precipitation is controlled dominantly by regional moisture regimes (similar to 70 \%) compared to local climatic conditions (similar to 30 \%); (iii) the most important climatic parameter during the rainy season is the precipitation amount along the trajectories of air mass movement; (iv) the influence of local precipitation amount and temperature is not sig-nificant during the rainy season, unlike the regional precipitation amount effect; (v) secondary fractionation processes (e.g., sub-cloud evaporation) can be identified through the d-excess and take place mainly in the dry season, either locally for delta O-18 and delta H-2, or along the air mass trajectories for d-excess. The analysis shows that regional and local factors vary in importance over the seasons and that the source regions and transport pathways, and particularly the climatic conditions along the pathways, have a large influence on the isotopic composition of rainfall. Although the general results have been reported qualitatively in previous studies (proving the validity of the approach), the proposed method provides quantitative estimates of the controlling factors, both for the whole data set and for distinct seasons. Therefore, it is argued that the approach constitutes an advancement in the statistical analysis of isotopic records in rainfall that can supplement or precede more complex studies utilizing atmospheric models. Due to its relative simplicity, the method can be easily transferred to other regions, or extended with other factors. The results illustrate that the interpretation of the isotopic composition of precipitation as a recorder of local climatic conditions, as for example performed for paleorecords of water isotopes, may not be adequate in the southern part of the Indochinese Peninsula, and likely neither in other regions affected by monsoon processes. However, the presented approach could open a pathway towards better and seasonally differentiated reconstruction of paleoclimates based on isotopic records.}, language = {en} } @article{TrietDungMerzetal.2018, author = {Triet, Nguyen Van Khanh and Dung, Nguyen Viet and Merz, Bruno and Apel, Heiko}, title = {Towards risk-based flood management in highly productive paddy rice cultivation}, series = {Natural hazards and earth system sciences}, volume = {18}, journal = {Natural hazards and earth system sciences}, number = {11}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1561-8633}, doi = {10.5194/nhess-18-2859-2018}, pages = {2859 -- 2876}, year = {2018}, abstract = {Flooding is an imminent natural hazard threatening most river deltas, e.g. the Mekong Delta. An appropriate flood management is thus required for a sustainable development of the often densely populated regions. Recently, the traditional event-based hazard control shifted towards a risk management approach in many regions, driven by intensive research leading to new legal regulation on flood management. However, a large-scale flood risk assessment does not exist for the Mekong Delta. Particularly, flood risk to paddy rice cultivation, the most important economic activity in the delta, has not been performed yet. Therefore, the present study was developed to provide the very first insight into delta-scale flood damages and risks to rice cultivation. The flood hazard was quantified by probabilistic flood hazard maps of the whole delta using a bivariate extreme value statistics, synthetic flood hydrographs, and a large-scale hydraulic model. The flood risk to paddy rice was then quantified considering cropping calendars, rice phenology, and harvest times based on a time series of enhanced vegetation index (EVI) derived from MODIS satellite data, and a published rice flood damage function. The proposed concept provided flood risk maps to paddy rice for the Mekong Delta in terms of expected annual damage. The presented concept can be used as a blueprint for regions facing similar problems due to its generic approach. Furthermore, the changes in flood risk to paddy rice caused by changes in land use currently under discussion in the Mekong Delta were estimated. Two land-use scenarios either intensifying or reducing rice cropping were considered, and the changes in risk were presented in spatially explicit flood risk maps. The basic risk maps could serve as guidance for the authorities to develop spatially explicit flood management and mitigation plans for the delta. The land-use change risk maps could further be used for adaptive risk management plans and as a basis for a cost-benefit of the discussed land-use change scenarios. Additionally, the damage and risks maps may support the recently initiated agricultural insurance programme in Vietnam.}, language = {en} } @article{MurawskiVorogushynBuergeretal.2018, author = {Murawski, Aline and Vorogushyn, Sergiy and B{\"u}rger, Gerd and Gerlitz, Lars and Merz, Bruno}, title = {Do changing weather types explain observed climatic trends in the rhine basin?}, series = {Journal of geophysical of geophysical research-atmosheres}, volume = {123}, journal = {Journal of geophysical of geophysical research-atmosheres}, number = {3}, publisher = {American Geophysical Union}, address = {Washington}, issn = {2169-897X}, doi = {10.1002/2017JD026654}, pages = {1562 -- 1584}, year = {2018}, abstract = {For attributing hydrological changes to anthropogenic climate change, catchment models are driven by climate model output. A widespread approach to bridge the spatial gap between global climate and hydrological catchment models is to use a weather generator conditioned on weather patterns (WPs). This approach assumes that changes in local climate are characterized by between-type changes of patterns. In this study we test this assumption by analyzing a previously developed WP classification for the Rhine basin, which is based on dynamic and thermodynamic variables. We quantify changes in pattern characteristics and associated climatic properties. The amount of between- and within-type changes is investigated by comparing observed trends to trends resulting solely from WP occurrence. To overcome uncertainties in trend detection resulting from the selected time period, all possible periods in 1901-2010 with a minimum length of 31 years are analyzed. Increasing frequency is found for some patterns associated with high precipitation, although the trend sign highly depends on the considered period. Trends and interannual variations of WP frequencies are related to the long-term variability of large-scale circulation modes. Long-term WP internal warming is evident for summer patterns and enhanced warming for spring/autumn patterns since the 1970s. Observed trends in temperature and partly in precipitation are mainly associated with frequency changes of specific WPs, but some amount of within-type changes remains. The classification can be used for downscaling of past changes considering this limitation, but the inclusion of thermodynamic variables into the classification impedes the downscaling of future climate projections.}, language = {en} } @article{HeVorogushynUngerShayestehetal.2018, author = {He, Zhihua and Vorogushyn, Sergiy and Unger-Shayesteh, Katy and Gafurov, Abror and Kalashnikova, Olga and Omorova, Elvira and Merz, Bruno}, title = {The Value of Hydrograph Partitioning Curves for Calibrating Hydrological Models in Glacierized Basins}, series = {Water resources research}, volume = {54}, journal = {Water resources research}, number = {3}, publisher = {American Geophysical Union}, address = {Washington}, issn = {0043-1397}, doi = {10.1002/2017WR021966}, pages = {2336 -- 2361}, year = {2018}, abstract = {This study refines the method for calibrating a glacio-hydrological model based on Hydrograph Partitioning Curves (HPCs), and evaluates its value in comparison to multidata set optimization approaches which use glacier mass balance, satellite snow cover images, and discharge. The HPCs are extracted from the observed flow hydrograph using catchment precipitation and temperature gradients. They indicate the periods when the various runoff processes, such as glacier melt or snow melt, dominate the basin hydrograph. The annual cumulative curve of the difference between average daily temperature and melt threshold temperature over the basin, as well as the annual cumulative curve of average daily snowfall on the glacierized areas are used to identify the starting and end dates of snow and glacier ablation periods. Model parameters characterizing different runoff processes are calibrated on different HPCs in a stepwise and iterative way. Results show that the HPC-based method (1) delivers model-internal consistency comparably to the tri-data set calibration method; (2) improves the stability of calibrated parameter values across various calibration periods; and (3) estimates the contributions of runoff components similarly to the tri-data set calibration method. Our findings indicate the potential of the HPC-based approach as an alternative for hydrological model calibration in glacierized basins where other calibration data sets than discharge are often not available or very costly to obtain.}, language = {en} } @article{AgarwalMarwanMaheswaranetal.2018, author = {Agarwal, Ankit and Marwan, Norbert and Maheswaran, Rathinasamy and Merz, Bruno and Kurths, J{\"u}rgen}, title = {Quantifying the roles of single stations within homogeneous regions using complex network analysis}, series = {Journal of hydrology}, volume = {563}, journal = {Journal of hydrology}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0022-1694}, doi = {10.1016/j.jhydrol.2018.06.050}, pages = {802 -- 810}, year = {2018}, abstract = {Regionalization and pooling stations to form homogeneous regions or communities are essential for reliable parameter transfer, prediction in ungauged basins, and estimation of missing information. Over the years, several clustering methods have been proposed for regional analysis. Most of these methods are able to quantify the study region in terms of homogeneity but fail to provide microscopic information about the interaction between communities, as well as about each station within the communities. We propose a complex network-based approach to extract this valuable information and demonstrate the potential of our approach using a rainfall network constructed from the Indian gridded daily precipitation data. The communities were identified using the network-theoretical community detection algorithm for maximizing the modularity. Further, the grid points (nodes) were classified into universal roles according to their pattern of within- and between-community connections. The method thus yields zoomed-in details of individual rainfall grids within each community.}, language = {en} } @article{WendiMarwanMerz2018, author = {Wendi, Dadiyorto and Marwan, Norbert and Merz, Bruno}, title = {In Search of Determinism-Sensitive Region to Avoid Artefacts in Recurrence Plots}, series = {International journal of bifurcation and chaos : in applied sciences and engineering}, volume = {28}, journal = {International journal of bifurcation and chaos : in applied sciences and engineering}, number = {1}, publisher = {World Scientific}, address = {Singapore}, issn = {0218-1274}, doi = {10.1142/S0218127418500074}, pages = {15}, year = {2018}, abstract = {As an effort to reduce parameter uncertainties in constructing recurrence plots, and in particular to avoid potential artefacts, this paper presents a technique to derive artefact-safe region of parameter sets. This technique exploits both deterministic (incl. chaos) and stochastic signal characteristics of recurrence quantification (i.e. diagonal structures). It is useful when the evaluated signal is known to be deterministic. This study focuses on the recurrence plot generated from the reconstructed phase space in order to represent many real application scenarios when not all variables to describe a system are available (data scarcity). The technique involves random shuffling of the original signal to destroy its original deterministic characteristics. Its purpose is to evaluate whether the determinism values of the original and the shuffled signal remain closely together, and therefore suggesting that the recurrence plot might comprise artefacts. The use of such determinism-sensitive region shall be accompanied by standard embedding optimization approaches, e.g. using indices like false nearest neighbor and mutual information, to result in a more reliable recurrence plot parameterization.}, language = {en} } @article{AertsBotzenClarkeetal.2018, author = {Aerts, J. C. J. H. and Botzen, W. J. Wouter and Clarke, K. C. and Cutter, S. L. and Hall, J. W. and Merz, Bruno and Michel-Kerjan, E. and Mysiak, J. and Surminski, Swenja and Kunreuther, H.}, title = {Integrating human behaviour dynamics into flood disaster risk assessment}, series = {Nature climate change}, volume = {8}, journal = {Nature climate change}, number = {3}, publisher = {Nature Publ. Group}, address = {London}, issn = {1758-678X}, doi = {10.1038/s41558-018-0085-1}, pages = {193 -- 199}, year = {2018}, abstract = {The behaviour of individuals, businesses, and government entities before, during, and immediately after a disaster can dramatically affect the impact and recovery time. However, existing risk-assessment methods rarely include this critical factor. In this Perspective, we show why this is a concern, and demonstrate that although initial efforts have inevitably represented human behaviour in limited terms, innovations in flood-risk assessment that integrate societal behaviour and behavioural adaptation dynamics into such quantifications may lead to more accurate characterization of risks and improved assessment of the effectiveness of risk-management strategies and investments. Such multidisciplinary approaches can inform flood-risk management policy development.}, language = {en} } @article{HeinrichBalanzateguiBensetal.2018, author = {Heinrich, Ingo and Balanzategui, Daniel and Bens, Oliver and Blasch, Gerald and Blume, Theresa and Boettcher, Falk and Borg, Erik and Brademann, Brian and Brauer, Achim and Conrad, Christopher and Dietze, Elisabeth and Dr{\"a}ger, Nadine and Fiener, Peter and Gerke, Horst H. and G{\"u}ntner, Andreas and Heine, Iris and Helle, Gerhard and Herbrich, Marcus and Harfenmeister, Katharina and Heussner, Karl-Uwe and Hohmann, Christian and Itzerott, Sibylle and Jurasinski, Gerald and Kaiser, Knut and Kappler, Christoph and Koebsch, Franziska and Liebner, Susanne and Lischeid, Gunnar and Merz, Bruno and Missling, Klaus Dieter and Morgner, Markus and Pinkerneil, Sylvia and Plessen, Birgit and Raab, Thomas and Ruhtz, Thomas and Sachs, Torsten and Sommer, Michael and Spengler, Daniel and Stender, Vivien and St{\"u}ve, Peter and Wilken, Florian}, title = {Interdisciplinary Geo-ecological Research across Time Scales in the Northeast German Lowland Observatory (TERENO-NE)}, series = {Vadose zone journal}, volume = {17}, journal = {Vadose zone journal}, number = {1}, publisher = {Soil Science Society of America}, address = {Madison}, issn = {1539-1663}, doi = {10.2136/vzj2018.06.0116}, pages = {25}, year = {2018}, abstract = {The Northeast German Lowland Observatory (TERENO-NE) was established to investigate the regional impact of climate and land use change. TERENO-NE focuses on the Northeast German lowlands, for which a high vulnerability has been determined due to increasing temperatures and decreasing amounts of precipitation projected for the coming decades. To facilitate in-depth evaluations of the effects of climate and land use changes and to separate the effects of natural and anthropogenic drivers in the region, six sites were chosen for comprehensive monitoring. In addition, at selected sites, geoarchives were used to substantially extend the instrumental records back in time. It is this combination of diverse disciplines working across different time scales that makes the observatory TERENO-NE a unique observation platform. We provide information about the general characteristics of the observatory and its six monitoring sites and present examples of interdisciplinary research activities at some of these sites. We also illustrate how monitoring improves process understanding, how remote sensing techniques are fine-tuned by the most comprehensive ground-truthing site DEMMIN, how soil erosion dynamics have evolved, how greenhouse gas monitoring of rewetted peatlands can reveal unexpected mechanisms, and how proxy data provides a long-term perspective of current ongoing changes.}, language = {en} } @article{MetinNguyenVietDungSchroeteretal.2018, author = {Metin, Ayse Duha and Nguyen Viet Dung, and Schr{\"o}ter, Kai and Guse, Bj{\"o}rn and Apel, Heiko and Kreibich, Heidi and Vorogushyn, Sergiy and Merz, Bruno}, title = {How do changes along the risk chain affect flood risk?}, series = {Natural hazards and earth system sciences}, volume = {18}, journal = {Natural hazards and earth system sciences}, number = {11}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1561-8633}, doi = {10.5194/nhess-18-3089-2018}, pages = {3089 -- 3108}, year = {2018}, abstract = {Flood risk is impacted by a range of physical and socio-economic processes. Hence, the quantification of flood risk ideally considers the complete flood risk chain, from atmospheric processes through catchment and river system processes to damage mechanisms in the affected areas. Although it is generally accepted that a multitude of changes along the risk chain can occur and impact flood risk, there is a lack of knowledge of how and to what extent changes in influencing factors propagate through the chain and finally affect flood risk. To fill this gap, we present a comprehensive sensitivity analysis which considers changes in all risk components, i.e. changes in climate, catchment, river system, land use, assets, and vulnerability. The application of this framework to the mesoscale Mulde catchment in Germany shows that flood risk can vary dramatically as a consequence of plausible change scenarios. It further reveals that components that have not received much attention, such as changes in dike systems or in vulnerability, may outweigh changes in often investigated components, such as climate. Although the specific results are conditional on the case study area and the selected assumptions, they emphasize the need for a broader consideration of potential drivers of change in a comprehensive way. Hence, our approach contributes to a better understanding of how the different risk components influence the overall flood risk.}, language = {en} } @article{MerzApelDungNguyenetal.2018, author = {Merz, Bruno and Apel, Heiko and Dung Nguyen, Viet-Dung and Falter, Daniela and Guse, Bj{\"o}rn and Hundecha, Yeshewatesfa and Kreibich, Heidi and Schr{\"o}ter, Kai and Vorogushyn, Sergiy}, title = {From precipitation to damage}, series = {Global flood hazard : applications in modeling, mapping and forecasting}, volume = {233}, journal = {Global flood hazard : applications in modeling, mapping and forecasting}, publisher = {American Geophysical Union}, address = {Washington}, isbn = {978-1-119-21788-6}, issn = {0065-8448}, doi = {10.1002/9781119217886.ch10}, pages = {169 -- 183}, year = {2018}, abstract = {Flood risk assessments for large river basins often involve piecing together smaller-scale assessments leading to erroneous risk statements. We describe a coupled model chain for quantifying flood risk at the scale of 100,000 km(2). It consists of a catchment model, a 1D-2D river network model, and a loss model. We introduce the model chain and present two applications. The first application for the Elbe River basin with an area of 66,000 km(2) demonstrates that it is feasible to simulate the complete risk chain for large river basins in a continuous simulation mode with high temporal and spatial resolution. In the second application, RFM is coupled to a multisite weather generator and applied to the Mulde catchment with an area of 6,000 km(2). This approach is able to provide a very long time series of spatially heterogeneous patterns of precipitation, discharge, inundation, and damage. These patterns respect the spatial correlation of the different processes and are suitable to derive large-scale risk estimates. We discuss how the RFM approach can be transferred to the continental scale.}, language = {en} } @article{MerzNguyenApeletal.2018, author = {Merz, Bruno and Nguyen, Viet Dung and Apel, Heiko and Gerlitz, Lars and Schr{\"o}ter, Kai and Steirou, Eva Styliani and Vorogushyn, Sergiy}, title = {Spatial coherence of flood-rich and flood-poor periods across Germany}, series = {Journal of hydrology}, volume = {559}, journal = {Journal of hydrology}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0022-1694}, doi = {10.1016/j.jhydrol.2018.02.082}, pages = {813 -- 826}, year = {2018}, abstract = {Despite its societal relevance, the question whether fluctuations in flood occurrence or magnitude are coherent in space has hardly been addressed in quantitative terms. We investigate this question for Germany by analysing fluctuations in annual maximum series (AMS) values at 68 discharge gauges for the common time period 1932-2005. We find remarkable spatial coherence across Germany given its different flood regimes. For example, there is a tendency that flood-rich/-poor years in sub-catchments of the Rhine basin, which are dominated by winter floods, coincide with flood-rich/-poor years in the southern sub-catchments of the Danube basin, which have their dominant flood season in summer. Our findings indicate that coherence is caused rather by persistence in catchment wetness than by persistent periods of higher/lower event precipitation. Further, we propose to differentiate between event-type and non-event-type coherence. There are quite a number of hydrological years with considerable nonevent-type coherence, i.e. AMS values of the 68 gauges are spread out through the year but in the same magnitude range. Years with extreme flooding tend to be of event-type and non-coherent, i.e. there is at least one precipitation event that affects many catchments to various degree. Although spatial coherence is a remarkable phenomenon, and large-scale flooding across Germany can lead to severe situations, extreme magnitudes across the whole country within one event or within one year were not observed in the investigated period. (C) 2018 Elsevier B.V. All rights reserved.}, language = {en} } @article{NiCaoShpritsetal.2018, author = {Ni, Binbin and Cao, Xing and Shprits, Yuri and Summers, Danny and Gu, Xudong and Fu, Song and Lou, Yuequn}, title = {Hot Plasma Effects on the Cyclotron-Resonant Pitch-Angle Scattering Rates of Radiation Belt Electrons Due to EMIC Waves}, series = {Geophysical research letters}, volume = {45}, journal = {Geophysical research letters}, number = {1}, publisher = {American Geophysical Union}, address = {Washington}, issn = {0094-8276}, doi = {10.1002/2017GL076028}, pages = {21 -- 30}, year = {2018}, abstract = {To investigate the hot plasma effects on the cyclotron-resonant interactions between electromagnetic ion cyclotron (EMIC) waves and radiation belt electrons in a realistic magnetospheric environment, calculations of the wave-induced bounce-averaged pitch angle diffusion coefficients are performed using both the cold and hot plasma dispersion relations. The results demonstrate that the hot plasma effects have a pronounced influence on the electron pitch angle scattering rates due to all three EMIC emission bands (H+, He+, and O+) when the hot plasma dispersion relation deviates significantly from the cold plasma approximation. For a given wave spectrum, the modification of the dispersion relation by hot anisotropic protons can strongly increase the minimum resonant energy for electrons interacting with O+ band EMIC waves, while the minimum resonant energies for H+ and He+ bands are not greatly affected. For H+ band EMIC waves, inclusion of hot protons tends to weaken the pitch angle scattering efficiency of >5MeV electrons. The most crucial differences introduced by the hot plasma effects occur for >3MeV electron scattering rates by He+ band EMIC waves. Mainly due to the changes of resonant frequency and wave group velocity when the hot protons are included, the difference in scattering rates can be up to an order of magnitude, showing a strong dependence on both electron energy and equatorial pitch angle. Our study confirms the importance of including hot plasma effects in modeling the scattering of ultra-relativistic radiation belt electrons by EMIC waves.}, language = {en} } @article{BrewkaEllmauthalerKernIsberneretal.2018, author = {Brewka, Gerhard and Ellmauthaler, Stefan and Kern-Isberner, Gabriele and Obermeier, Philipp and Ostrowski, Max and Romero, Javier and Schaub, Torsten and Schieweck, Steffen}, title = {Advanced solving technology for dynamic and reactive applications}, series = {K{\"u}nstliche Intelligenz}, volume = {32}, journal = {K{\"u}nstliche Intelligenz}, number = {2-3}, publisher = {Springer}, address = {Heidelberg}, issn = {0933-1875}, doi = {10.1007/s13218-018-0538-8}, pages = {199 -- 200}, year = {2018}, language = {en} } @article{MugelePlummerSteffenetal.2018, author = {Mugele, Hendrik and Plummer, Ashley and Steffen, Kathrin and Stoll, Josefine and Mayer, Frank and M{\"u}ller, Juliane}, title = {General versus sports-specific injury prevention programs in athletes}, series = {PLOS ONE}, volume = {13}, journal = {PLOS ONE}, number = {10}, publisher = {Public Library of Science}, address = {San Francisco}, issn = {1932-6203}, doi = {10.1371/journal.pone.0205635}, pages = {1 -- 16}, year = {2018}, abstract = {Introduction Annually, 2 million sports-related injuries are reported in Germany of which athletes contribute to a large proportion. Multiple sport injury prevention programs designed to decrease acute and overuse injuries in athletes have been proven effective. Yet, the programs' components, general or sports-specific, that led to these positive effects are uncertain. Despite not knowing about the superiority of sports-specific injury prevention programs, coaches and athletes alike prefer more specialized rather than generalized exercise programs. Therefore, this systematic review aimed to present the available evidence on how general and sports-specific prevention programs affect injury rates in athletes. Methods PubMed and Web of Science were electronically searched throughout April 2018. The inclusion criteria were publication dates Jan 2006-Dec 2017, athletes (11-45 years), exercise-based injury prevention programs and injury incidence. The methodological quality was assessed with the Cochrane Collaboration assessment tools. Results Of the initial 6619 findings, 15 studies met the inclusion criteria. In addition, 13 studies were added from reference lists and external sources making a total of 28 studies. Of which, one used sports-specific, seven general and 20 mixed prevention strategies. Twenty-four studies revealed reduced injury rates. Of the four ineffective programs, one was general and three mixed. Conclusion The general and mixed programs positively affect injury rates. Sports-specific programs are uninvestigated and despite wide discussion regarding the definition, no consensus was reached. Defining such terminology and investigating the true effectiveness of such IPPs is a potential avenue for future research.}, language = {en} } @article{RuszkiewiczdeMacedoMirandaVizueteetal.2018, author = {Ruszkiewicz, Joanna and de Macedo, Gabriel Teixeira and Miranda-Vizuete, Antonio and Teixeira da Rocha, Joao B. and Bowman, Aaron B. and Bornhorst, Julia and Schwerdtle, Tanja and Aschner, Michael}, title = {The cytoplasmic thioredoxin system in Caenorhabditis elegans affords protection from methylmercury in an age-specific manner}, series = {Neurotoxicology : the interdisciplinary journal of effects to toxic substances on the nervous system}, volume = {68}, journal = {Neurotoxicology : the interdisciplinary journal of effects to toxic substances on the nervous system}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0161-813X}, doi = {10.1016/j.neuro.2018.08.007}, pages = {189 -- 202}, year = {2018}, abstract = {Methylmercury (MeHg) is an environmental pollutant linked to many neurological defects, especially in developing individuals. The thioredoxin (TRX) system is a key redox regulator affected by MeHg toxicity, however the mechanisms and consequences of MeHg-induced dysfunction are not completely understood. This study evaluated the role of the TRX system in C. elegans susceptibility to MeHg during development. Worms lacking or overexpressing proteins from the TRX family were exposed to MeHg for 1 h at different developmental stage: L1, L4 and adult. Worms without cytoplasmic thioredoxin system exhibited age-specific susceptibility to MeHg when compared to wild-type (wt). This susceptibility corresponded partially to decreased total glutathione (GSH) levels and enhanced degeneration of dopaminergic neurons. In contrast, the overexpression of the cytoplasmic system TRX-1/TRXR-1 did not provide substantial protection against MeHg. Moreover, transgenic worms exhibited decreased protein expression for cytoplasmic thioredoxin reductase (TRXR-1). Both mitochondrial thioredoxin system TRX-2/TRXR-2, as well as other thioredoxin-like proteins: TRX-3, TRX-4, TRX-5 did not show significant role in C. elegans resistance to MeHg. Based on the current findings, the cytoplasmic thioredoxin system TRX-1/TRXR-1 emerges as an important age-sensitive protectant against MeHg toxicity in C. elegans.}, language = {en} } @article{BaroniScheiffeleSchroenetal.2018, author = {Baroni, Gabriele and Scheiffele, Lena and Schr{\"o}n, Martin and Ingwersen, Joachim and Oswald, Sascha}, title = {Uncertainty, sensitivity and improvements in soil moisture estimation with cosmic-ray neutron sensing}, series = {Journal of hydrology}, volume = {564}, journal = {Journal of hydrology}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0022-1694}, doi = {10.1016/j.jhydrol.2018.07.053}, pages = {873 -- 887}, year = {2018}, abstract = {Cosmic-ray neutron sensing (CRNS) is a promising proximal soil sensing technique to estimate soil moisture at intermediate scale and high temporal resolution. However, the signal shows complex and non-unique response to all hydrogen pools near the land surface, providing some challenges for soil moisture estimation in practical applications. Aims of the study were 1) to assess the uncertainty of CRNS as a stand-alone approach to estimate volumetric soil moisture in cropped field 2) to identify the causes of this uncertainty 3) and possible improvements. Two experimental sites in Germany were equipped with a CRNS probe and point-scale soil moisture network. Additional monitoring activities were conducted during the crop growing season to characterize the soil-plant systems. This data is used to identify and quantify the different sources of uncertainty (factors). An uncertainty analysis, based on Monte Carlo approach, is applied to propagate these uncertainties to CRNS soil moisture estimations. In addition, a sensitivity analysis based on the Sobol' method is performed to identify the most important factors explaining this uncertainty. Results show that CRNS soil moisture compares well to the soil moisture network when these point-scale values are weighted to account for the spatial sensitivity of the signal and other sources of hydrogen (lattice water and organic carbon) are added to the water content. However, the performance decreases when CRNS is considered as a stand-alone method to retrieve the actual (non-weighted) volumetric soil moisture. The support volume (penetration depth and radius) shows also a considerable uncertainty, especially in relatively dry soil moisture conditions. Four of the seven factors analyzed (the vertical soil moisture profile, bulk density, incoming neutron correction and the calibrated parameter N0) were found to play an important role. Among the possible improvements identified, a simple correction factor based on vertical point-scale soil moisture profiles shows to be a promising approach to account for the sensitivity of the CRNS signal to the upper soil layers.}, language = {en} } @article{ShpritsMeniettiDrozdovetal.2018, author = {Shprits, Yuri and Menietti, J. D. and Drozdov, Alexander and Horne, Richard B. and Woodfield, Emma E. and Groene, J. B. and de Soria-Santacruz, M. and Averkamp, T. F. and Garrett, H. and Paranicas, C. and Gurnett, Don A.}, title = {Strong whistler mode waves observed in the vicinity of Jupiter's moons}, series = {Nature Communications}, volume = {9}, journal = {Nature Communications}, publisher = {Nature Publ. Group}, address = {London}, issn = {2041-1723}, doi = {10.1038/s41467-018-05431-x}, pages = {6}, year = {2018}, abstract = {Understanding of wave environments is critical for the understanding of how particles are accelerated and lost in space. This study shows that in the vicinity of Europa and Ganymede, that respectively have induced and internal magnetic fields, chorus wave power is significantly increased. The observed enhancements are persistent and exceed median values of wave activity by up to 6 orders of magnitude for Ganymede. Produced waves may have a pronounced effect on the acceleration and loss of particles in the Jovian magnetosphere and other astrophysical objects. The generated waves are capable of significantly modifying the energetic particle environment, accelerating particles to very high energies, or producing depletions in phase space density. Observations of Jupiter's magnetosphere provide a unique opportunity to observe how objects with an internal magnetic field can interact with particles trapped in magnetic fields of larger scale objects.}, language = {en} } @article{SchaubWoltran2018, author = {Schaub, Torsten and Woltran, Stefan}, title = {Answer set programming unleashed!}, series = {K{\"u}nstliche Intelligenz}, volume = {32}, journal = {K{\"u}nstliche Intelligenz}, number = {2-3}, publisher = {Springer}, address = {Heidelberg}, issn = {0933-1875}, doi = {10.1007/s13218-018-0550-z}, pages = {105 -- 108}, year = {2018}, abstract = {Answer Set Programming faces an increasing popularity for problem solving in various domains. While its modeling language allows us to express many complex problems in an easy way, its solving technology enables their effective resolution. In what follows, we detail some of the key factors of its success. Answer Set Programming [ASP; Brewka et al. Commun ACM 54(12):92-103, (2011)] is seeing a rapid proliferation in academia and industry due to its easy and flexible way to model and solve knowledge-intense combinatorial (optimization) problems. To this end, ASP offers a high-level modeling language paired with high-performance solving technology. As a result, ASP systems provide out-off-the-box, general-purpose search engines that allow for enumerating (optimal) solutions. They are represented as answer sets, each being a set of atoms representing a solution. The declarative approach of ASP allows a user to concentrate on a problem's specification rather than the computational means to solve it. This makes ASP a prime candidate for rapid prototyping and an attractive tool for teaching key AI techniques since complex problems can be expressed in a succinct and elaboration tolerant way. This is eased by the tuning of ASP's modeling language to knowledge representation and reasoning (KRR). The resulting impact is nicely reflected by a growing range of successful applications of ASP [Erdem et al. AI Mag 37(3):53-68, 2016; Falkner et al. Industrial applications of answer set programming. K++nstliche Intelligenz (2018)]}, language = {en} } @article{CabalarKaminskiSchaubetal.2018, author = {Cabalar, Pedro and Kaminski, Roland and Schaub, Torsten and Schuhmann, Anna}, title = {Temporal answer set programming on finite traces}, series = {Theory and practice of logic programming}, volume = {18}, journal = {Theory and practice of logic programming}, number = {3-4}, publisher = {Cambridge Univ. Press}, address = {New York}, issn = {1471-0684}, doi = {10.1017/S1471068418000297}, pages = {406 -- 420}, year = {2018}, abstract = {In this paper, we introduce an alternative approach to Temporal Answer Set Programming that relies on a variation of Temporal Equilibrium Logic (TEL) for finite traces. This approach allows us to even out the expressiveness of TEL over infinite traces with the computational capacity of (incremental) Answer Set Programming (ASP). Also, we argue that finite traces are more natural when reasoning about action and change. As a result, our approach is readily implementable via multi-shot ASP systems and benefits from an extension of ASP's full-fledged input language with temporal operators. This includes future as well as past operators whose combination offers a rich temporal modeling language. For computation, we identify the class of temporal logic programs and prove that it constitutes a normal form for our approach. Finally, we outline two implementations, a generic one and an extension of the ASP system clingo. Under consideration for publication in Theory and Practice of Logic Programming (TPLP)}, language = {en} } @article{KimShprits2018, author = {Kim, Kyung-Chan and Shprits, Yuri}, title = {Survey of the Favorable Conditions for Magnetosonic Wave Excitation}, series = {Journal of geophysical research : Space physics}, volume = {123}, journal = {Journal of geophysical research : Space physics}, number = {1}, publisher = {American Geophysical Union}, address = {Washington}, issn = {2169-9380}, doi = {10.1002/2017JA024865}, pages = {400 -- 413}, year = {2018}, abstract = {The ratio of the proton ring velocity (VR) to the local Alfven speed (VA), in addition to proton ring distributions, plays a key factor in the excitation of magnetosonic waves at frequencies between the proton cyclotron frequency fcp and the lower hybrid resonance frequency fLHR in the Earth's magnetosphere. Here we investigate whether there is a statistically significant relationship between occurrences of proton rings and magnetosonic waves both outside and inside the plasmapause using particle and wave data from Van Allen Probe-A during the time period of October 2012 to December 2015. We also perform a statistical survey of the ratio of the ring energy (ER, corresponding to VR) to the Alfven energy (EA, corresponding to VA) to determine the favorable conditions under which magnetosonic waves in each of two frequency bands (fcp < f ≤ 0.5 fLHR and 0.5 fLHR < f < fLHR) can be excited. The results show that the magnetosonic waves in both frequency bands occur around the postnoon (12-18 magnetic local time, MLT) sector outside the plasmapause when ER is comparable to or lower than EA, and those in lower-frequency bands (fcp < f ≤ 0.5 fLHR) occur around the postnoon sector inside the plasmapause when ER/EA > ~9. However, there is one discrepancy between occurrences of proton rings and magnetosonic waves in low-frequency bands around the prenoon sector (6-12 MLT) outside the plasmapause, which suggests either that the waves may have propagated during active time from the postnoon sector after being excited during quiet time, or they may have locally excited in the prenoon sector during active time.}, language = {en} } @article{ZwickelKahlRychliketal.2018, author = {Zwickel, Theresa and Kahl, Sandra and Rychlik, Michael and M{\"u}ller, Marina E. H.}, title = {Chemotaxonomy of Mycotoxigenic Small-Spored Alternaria Fungi}, series = {Frontiers in microbiology}, volume = {9}, journal = {Frontiers in microbiology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-302X}, doi = {10.3389/fmicb.2018.01368}, pages = {20}, year = {2018}, abstract = {Necrotrophic as well as saprophytic small-spored Altemaria (A.) species are annually responsible for major losses of agricultural products, such as cereal crops, associated with the contamination of food and feedstuff with potential health-endangering Altemaria toxins. Knowledge of the metabolic capabilities of different species-groups to form mycotoxins is of importance for a reliable risk assessment. 93 Altemaria strains belonging to the four species groups Alternaria tenuissima, A. arborescens, A. altemata, and A. infectoria were isolated from winter wheat kernels harvested from fields in Germany and Russia and incubated under equal conditions. Chemical analysis by means of an HPLC-MS/MS multi-Alternaria-toxin-method showed that 95\% of all strains were able to form at least one of the targeted 17 non-host specific Altemaria toxins. Simultaneous production of up to 15 (modified) Altemaria toxins by members of the A. tenuissima, A. arborescens, A. altemata species-groups and up to seven toxins by A. infectoria strains was demonstrated. Overall tenuazonic acid was the most extensively formed mycotoxin followed by alternariol and alternariol mono methylether, whereas altertoxin I was the most frequently detected toxin. Sulfoconjugated modifications of alternariol, alternariol mono methylether, altenuisol and altenuene were frequently determined. Unknown perylene quinone derivatives were additionally detected. Strains of the species-group A. infectoria could be segregated from strains of the other three species-groups due to significantly lower toxin levels and the specific production of infectopyrone. Apart from infectopyrone, alterperylenol was also frequently produced by 95\% of the A. infectoria strains. Neither by the concentration nor by the composition of the targeted Altemaria toxins a differentiation between the species-groups A. altemata, A. tenuissima and A. arborescens was possible.}, language = {en} } @article{SaikinJordanovaZhangetal.2018, author = {Saikin, Anthony and Jordanova, Vania K. and Zhang, J. C. and Smith, C. W. and Spence, H. E. and Larsen, B. A. and Reeves, G. D. and Torbert, R. B. and Kletzing, C. A. and Zhelayskaya, I. S. and Shprits, Yuri}, title = {Comparing simulated and observed EMIC wave amplitudes using in situ Van}, series = {Journal of Atmospheric and Solar-Terrestrial Physics}, volume = {177}, journal = {Journal of Atmospheric and Solar-Terrestrial Physics}, publisher = {Elsevier}, address = {Oxford}, issn = {1364-6826}, doi = {10.1016/j.jastp.2018.01.024}, pages = {190 -- 201}, year = {2018}, abstract = {We perform a statistical study calculating electromagnetic ion cyclotron (EMIC) wave amplitudes based off in situ plasma measurements taken by the Van Allen Probes' (1.1-5.8 Re) Helium, Oxygen, Proton, Electron (HOPE) instrument. Calculated wave amplitudes are compared to EMIC waves observed by the Electric and Magnetic Field Instrument Suite and Integrated Science on board the Van Allen Probes during the same period. The survey covers a 22-month period (1 November 2012 to 31 August 2014), a full Van Allen Probe magnetic local time (MLT) precession. The linear theory proxy was used to identify EMIC wave events with plasma conditions favorable for EMIC wave excitation. Two hundred and thirty-two EMIC wave events (103 H+-band and 129 He+-band) were selected for this comparison. Nearly all events selected are observed beyond L = 4. Results show that calculated wave amplitudes exclusively using the in situ HOPE measurements produce amplitudes too low compared to the observed EMIC wave amplitudes. Hot proton anisotropy (Ahp) distributions are asymmetric in MLT within the inner (L < 7) magnetosphere with peak (minimum) Ahp, ∼0.81 to 1.00 (∼0.62), observed in the dawn (dusk), 0000 < MLT ≤ 1200 (1200 < MLT ≤ 2400), sectors. Measurements of Ahp are found to decrease in the presence of EMIC wave activity. Ahp amplification factors are determined and vary with respect to EMIC wave-band and MLT. He+-band events generally require double (quadruple) the measured Ahp for the dawn (dusk) sector to reproduce the observed EMIC wave amplitudes.}, language = {en} } @article{ShenarHainichTodtetal.2018, author = {Shenar, Tomer and Hainich, Rainer and Todt, Helge Tobias and Moffat, Anthony F. J. and Sander, Andreas Alexander Christoph and Oskinova, Lidia M. and Ramachandran, Varsha and Munoz, M. and Pablo, H. and Sana, Hugues and Hamann, Wolf-Rainer}, title = {The shortest-period Wolf-Rayet binary in the small magellanic cloud}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {616}, journal = {Astronomy and astrophysics : an international weekly journal}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {1432-0746}, doi = {10.1051/0004-6361/201833006}, pages = {15}, year = {2018}, abstract = {Context. SMC AB6 is the shortest-period (P = 6.5 d) Wolf-Rayet (WR) binary in the Small Magellanic Cloud. This binary is therefore a key system in the study of binary interaction and formation of WR stars at low metallicity. The WR component in AB6 was previously found to be very luminous (log L = 6.3 [L-circle dot]) compared to its reported orbital mass (approximate to 8 M-circle dot), placing it significantly above the Eddington limit. Aims. Through spectroscopy and orbital analysis of newly acquired optical data taken with the Ultraviolet and Visual Echelle Spectrograph (UVES), we aim to understand the peculiar results reported for this system and explore its evolutionary history. Methods. We measured radial velocities via cross-correlation and performed a spectral analysis using the Potsdam Wolf-Rayet model atmosphere code. The evolution of the system was analyzed using the Binary Population and Spectral Synthesis evolution code. Results. AB6 contains at least four stars. The 6.5 d period WR binary comprises the WR primary (WN3:h, star A) and a rather rapidly rotating (v(eq) = 265 km s(-1)) early O-type companion (O5.5 V, star B). Static N III and N IV emission lines and absorption signatures in He lines suggest the presence of an early-type emission line star (O5.5 I(f), star C). Finally, narrow absorption lines portraying a long-term radial velocity variation show the existence of a fourth star (O7.5 V, star D). Star D appears to form a second 140 d period binary together with a fifth stellar member, which is a B-type dwarf or a black hole. It is not clear that these additional components are bound to the WR binary. We derive a mass ratio of M-O/M-WR = 2.2 +/- 0.1. The WR star is found to be less luminous than previously thought (log L = 5.9 [L-circle dot]) and, adopting M-O = 41 M-circle dot for star B, more massive (M-WR = 18 M-circle dot). Correspondingly, the WR star does not exceed the Eddington limit. We derive the initial masses of M-i,M-WR = 60 M-circle dot and M-i,M-O = 40 M-circle dot and an age of 3.9 Myr for the system. The WR binary likely experienced nonconservative mass transfer in the past supported by the relatively rapid rotation of star B. Conclusions. Our study shows that AB6 is a multiple - probably quintuple - system. This finding resolves the previously reported puzzle of the WR primary exceeding the Eddington limit and suggests that the WR star exchanged mass with its companion in the past.}, language = {en} } @article{RamachandranHamannHainichetal.2018, author = {Ramachandran, Varsha and Hamann, Wolf-Rainer and Hainich, Rainer and Oskinova, Lidia M. and Shenar, Tomer and Sander, Andreas Alexander Christoph and Todt, Helge Tobias and Gallagher, John S.}, title = {Stellar population of the superbubble N206 in the LMC II. Parameters of the OB and WR stars, and the total massive star feedback}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {615}, journal = {Astronomy and astrophysics : an international weekly journal}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {1432-0746}, doi = {10.1051/0004-6361/201832816}, pages = {72}, year = {2018}, abstract = {Context. Clusters or associations of early-type stars are often associated with a "superbubble" of hot gas. The formation of such superbubbles is caused by the feedback from massive stars. The complex N206 in the Large Magellanic Cloud (LMC) exhibits a superbubble and a rich massive star population. Aims. Our goal is to perform quantitative spectral analyses of all massive stars associated with the N206 superbubble in order to determine their stellar and wind parameters. We compare the superbubble energy budget to the stellar energy input and discuss the star formation history of the region. Results. We present the stellar and wind parameters of the OB stars and the two Wolf-Rayet (WR) binaries in the N206 complex. Twelve percent of the sample show Oe/Be type emission lines, although most of them appear to rotate far below critical. We found eight runaway stars based on their radial velocity. The wind-momentum luminosity relation of our OB sample is consistent with the expectations. The Hertzsprung-Russell diagram (HRD) of the OB stars reveals a large age spread (1-30 Myr), suggesting different episodes of star formation in the complex. The youngest stars are concentrated in the inner part of the complex, while the older OB stars are scattered over outer regions. We derived the present day mass function for the entire N206 complex as well as for the cluster NGC2018. The total ionizing photon flux produced by all massive stars in the N206 complex is Q(0) approximate to 5 x 10(50) s(-1), and the mechanical luminosity of their stellar winds amounts to L-mec = 1.7 x 10(38) erg s(-1). Three very massive Of stars are found to dominate the feedback among 164 OB stars in the sample. The two WR winds alone release about as much mechanical luminosity as the whole OB star sample. The cumulative mechanical feedback from all massive stellar winds is comparable to the combined mechanical energy of the supernova explosions that likely occurred in the complex. Accounting also for the WR wind and supernovae, the mechanical input over the last five Myr is approximate to 2.3 x 10(52) erg. Conclusions. The N206 complex in the LMC has undergone star formation episodes since more than 30 Myr ago. From the spectral analyses of its massive star population, we derive a current star formation rate of 2.2 x 10(-3) M-circle dot yr(-1). From the combined input of mechanical energy from all stellar winds, only a minor fraction is emitted in the form of X-rays. The corresponding input accumulated over a long time also exceeds the current energy content of the complex by more than a factor of five. The morphology of the complex suggests a leakage of hot gas from the superbubble.}, language = {en} } @article{SanderFuerstKretschmaretal.2018, author = {Sander, Andreas Alexander Christoph and F{\"u}rst, F. and Kretschmar, P. and Oskinova, Lidia M. and Todt, Helge Tobias and Hainich, Rainer and Shenar, Tomer and Hamann, Wolf-Rainer}, title = {Coupling hydrodynamics with comoving frame radiative transfer}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {610}, journal = {Astronomy and astrophysics : an international weekly journal}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {1432-0746}, doi = {10.1051/0004-6361/201731575}, pages = {19}, year = {2018}, abstract = {Aims. To gain a realistic picture of the donor star in Vela X-1, we constructed a hydrodynamically consistent atmosphere model describing the wind stratification while properly reproducing the observed donor spectrum. To investigate how X-ray illumination affects the stellar wind, we calculated additional models for different X-ray luminosity regimes. Methods. We used the recently updated version of the Potsdam Wolf-Rayet code to consistently solve the hydrodynamic equation together with the statistical equations and the radiative transfer. Results. The wind flow in Vela X-1 is driven by ions from various elements, with Fe III and S III leading in the outer wind. The model-predicted mass-loss rate is in line with earlier empirical studies. The mass-loss rate is almost unaffected by the presence of the accreting NS in the wind. The terminal wind velocity is confirmed at u(infinity) approximate to 600 km s(-1). On the other hand, the wind velocity in the inner region where the NS is located is only approximate to 100 km s(-1), which is not expected on the basis of a standard beta-velocity law. In models with an enhanced level of X-rays, the velocity field in the outer wind can be altered. If the X-ray flux is too high, the acceleration breaks down because the ionization increases. Conclusions. Accounting for radiation hydrodynamics, our Vela X-1 donor atmosphere model reveals a low wind speed at the NS location, and it provides quantitative information on wind driving in this important HMXB.}, language = {en} } @article{ToalaOskinovaHamannetal.2018, author = {Toala, Jes{\´u}s Alberto and Oskinova, Lidia M. and Hamann, Wolf-Rainer and Ignace, Richard and Sander, Andreas Alexander Christoph and Shenar, Tomer and Todt, Helge Tobias and Chu, Y. -H. and Guerrero, Martin A. and Hainich, Rainer and Torrejon, Jose Miguel}, title = {On the Apparent Absence of Wolf-Rayet plus Neutron Star Systems}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics ; Part 2, Letters}, volume = {869}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics ; Part 2, Letters}, number = {1}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {2041-8205}, doi = {10.3847/2041-8213/aaf39d}, pages = {5}, year = {2018}, abstract = {Among the different types of massive stars in advanced evolutionary stages is the enigmatic WN8h type. There are only a few Wolf-Rayet (WR) stars with this spectral type in our Galaxy. It has long been suggested that WN8h-type stars are the products of binary evolution that may harbor neutron stars (NS). One of the most intriguing WN8h stars is the runaway WR 124 surrounded by its magnificent nebula M1-67. We test the presence of an accreting NS companion in WR 124 using similar to 100 ks long observations by the Chandra X-ray observatory. The hard X-ray emission from WR 124 with a luminosity of L-X similar to 10(31) erg s(-1) is marginally detected. We use the non-local thermodynamic equilibrium stellar atmosphere code PoWR to estimate the WR wind opacity to the X-rays. The wind of a WN8-type star is effectively opaque for X-rays, hence the low X-ray luminosity of WR 124 does not rule out the presence of an embedded compact object. We suggest that, in general, high-opacity WR winds could prevent X-ray detections of embedded NS, and be an explanation for the apparent lack of WR+NS systems.}, language = {en} } @article{Schladebach2018, author = {Schladebach, Marcus}, title = {Grundfragen des Europarechts}, series = {studere : Rechtszeitschrift der Universit{\"a}t Potsdam}, volume = {11}, journal = {studere : Rechtszeitschrift der Universit{\"a}t Potsdam}, number = {20}, publisher = {studere e.v.}, address = {Potsdam}, issn = {1867-6170}, pages = {18 -- 25}, year = {2018}, language = {de} } @article{BobdaYongaGebseretal.2018, author = {Bobda, Christophe and Yonga, Franck and Gebser, Martin and Ishebabi, Harold and Schaub, Torsten}, title = {High-level synthesis of on-chip multiprocessor architectures based on answer set programming}, series = {Journal of Parallel and Distributed Computing}, volume = {117}, journal = {Journal of Parallel and Distributed Computing}, publisher = {Elsevier}, address = {San Diego}, issn = {0743-7315}, doi = {10.1016/j.jpdc.2018.02.010}, pages = {161 -- 179}, year = {2018}, abstract = {We present a system-level synthesis approach for heterogeneous multi-processor on chip, based on Answer Set Programming(ASP). Starting with a high-level description of an application, its timing constraints and the physical constraints of the target device, our goal is to produce the optimal computing infrastructure made of heterogeneous processors, peripherals, memories and communication components. Optimization aims at maximizing speed, while minimizing chip area. Also, a scheduler must be produced that fulfills the real-time requirements of the application. Even though our approach will work for application specific integrated circuits, we have chosen FPGA as target device in this work because of their reconfiguration capabilities which makes it possible to explore several design alternatives. This paper addresses the bottleneck of problem representation size by providing a direct and compact ASP encoding for automatic synthesis that is semantically equivalent to previously established ILP and ASP models. We describe a use-case in which designers specify their applications in C/C++ from which optimum systems can be derived. We demonstrate the superiority of our approach toward existing heuristics and exact methods with synthesis results on a set of realistic case studies. (C) 2018 Elsevier Inc. All rights reserved.}, language = {en} } @article{GebserObermeierSchaubetal.2018, author = {Gebser, Martin and Obermeier, Philipp and Schaub, Torsten and Ratsch-Heitmann, Michel and Runge, Mario}, title = {Routing driverless transport vehicles in car assembly with answer set programming}, series = {Theory and practice of logic programming}, volume = {18}, journal = {Theory and practice of logic programming}, number = {3-4}, publisher = {Cambridge Univ. Press}, address = {New York}, issn = {1471-0684}, doi = {10.1017/S1471068418000182}, pages = {520 -- 534}, year = {2018}, abstract = {Automated storage and retrieval systems are principal components of modern production and warehouse facilities. In particular, automated guided vehicles nowadays substitute human-operated pallet trucks in transporting production materials between storage locations and assembly stations. While low-level control systems take care of navigating such driverless vehicles along programmed routes and avoid collisions even under unforeseen circumstances, in the common case of multiple vehicles sharing the same operation area, the problem remains how to set up routes such that a collection of transport tasks is accomplished most effectively. We address this prevalent problem in the context of car assembly at Mercedes-Benz Ludwigsfelde GmbH, a large-scale producer of commercial vehicles, where routes for automated guided vehicles used in the production process have traditionally been hand-coded by human engineers. Such adhoc methods may suffice as long as a running production process remains in place, while any change in the factory layout or production targets necessitates tedious manual reconfiguration, not to mention the missing portability between different production plants. Unlike this, we propose a declarative approach based on Answer Set Programming to optimize the routes taken by automated guided vehicles for accomplishing transport tasks. The advantages include a transparent and executable problem formalization, provable optimality of routes relative to objective criteria, as well as elaboration tolerance towards particular factory layouts and production targets. Moreover, we demonstrate that our approach is efficient enough to deal with the transport tasks evolving in realistic production processes at the car factory of Mercedes-Benz Ludwigsfelde GmbH.}, language = {en} } @article{GebserObermeierOttoetal.2018, author = {Gebser, Martin and Obermeier, Philipp and Otto, Thomas and Schaub, Torsten and Sabuncu, Orkunt and Van Nguyen, and Tran Cao Son,}, title = {Experimenting with robotic intra-logistics domains}, series = {Theory and practice of logic programming}, volume = {18}, journal = {Theory and practice of logic programming}, number = {3-4}, publisher = {Cambridge Univ. Press}, address = {New York}, issn = {1471-0684}, doi = {10.1017/S1471068418000200}, pages = {502 -- 519}, year = {2018}, abstract = {We introduce the asprilo1 framework to facilitate experimental studies of approaches addressing complex dynamic applications. For this purpose, we have chosen the domain of robotic intra-logistics. This domain is not only highly relevant in the context of today's fourth industrial revolution but it moreover combines a multitude of challenging issues within a single uniform framework. This includes multi-agent planning, reasoning about action, change, resources, strategies, etc. In return, asprilo allows users to study alternative solutions as regards effectiveness and scalability. Although asprilo relies on Answer Set Programming and Python, it is readily usable by any system complying with its fact-oriented interface format. This makes it attractive for benchmarking and teaching well beyond logic programming. More precisely, asprilo consists of a versatile benchmark generator, solution checker and visualizer as well as a bunch of reference encodings featuring various ASP techniques. Importantly, the visualizer's animation capabilities are indispensable for complex scenarios like intra-logistics in order to inspect valid as well as invalid solution candidates. Also, it allows for graphically editing benchmark layouts that can be used as a basis for generating benchmark suites.}, language = {en} } @article{GrunerHainichSanderetal.2018, author = {Gruner, David and Hainich, Rainer and Sander, Andreas Alexander Christoph and Shenar, Tomer and Todt, Helge Tobias and Oskinova, Lidia M. and Ramachandran, Varsha and Ayres, T. and Hamann, Wolf-Rainer}, title = {The extreme O-type spectroscopic binary HD 93129A A quantitative, multiwavelength analysis}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {621}, journal = {Astronomy and astrophysics : an international weekly journal}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {1432-0746}, doi = {10.1051/0004-6361/201833178}, pages = {16}, year = {2018}, abstract = {Context. HD 93129A was classified as the earliest O-type star in the Galaxy (O2 If*) and is considered as the prototype of its spectral class. However, interferometry shows that this object is a binary system, while recent observations even suggest a triple configuration. None of the previous spectral analyses of this object accounted for its multiplicity. With new high-resolution UV and optical spectra, we have the possibility to reanalyze this key object, taking its binary nature into account for the first time. Aims. We aim to derive the fundamental parameters and the evolutionary status of HD 93129A, identifying the contributions of both components to the composite spectrum Results. Despite the similar spectral types of the two components, we are able to find signatures from each of the components in the combined spectrum, which allows us to estimate the parameters of both stars. We derive log(L/L-circle dot) = 6.15, T-eff = 52 kK, and log (M)over dot = -4.7[M-circle dot yr(-1)] for the primary Aa, and log(L/L-circle dot) = 5.58, T-eff = 45 kK, and log (M)over dot = -5.8 [M(circle dot)yr(-1)] for the secondary Ab. Conclusions. Even when accounting for the binary nature, the primary of HD 93129A is found to be one of the hottest and most luminous O stars in our Galaxy. Based on the theoretical decomposition of the spectra, we assign spectral types O2 If* and O3 III(f*) to components Aa and Ab, respectively. While we achieve a good fit for a wide spectral range, specific spectral features are not fully reproduced. The data are not sufficient to identify contributions from a hypothetical third component in the system.}, language = {en} } @article{RobradeOskinovaSchmittetal.2018, author = {Robrade, Jan and Oskinova, Lidia M. and Schmitt, J. H. M. M. and Leto, Paolo and Trigilio, C.}, title = {Outstanding X-ray emission from the stellar radio pulsar CU Virginis}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {619}, journal = {Astronomy and astrophysics : an international weekly journal}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {1432-0746}, doi = {10.1051/0004-6361/201833492}, pages = {6}, year = {2018}, abstract = {Context. Among the intermediate-mass magnetic chemically peculiar (MCP) stars, CU Vir is one of the most intriguing objects. Its 100\% circularly polarized beams of radio emission sweep the Earth as the star rotates, thereby making this strongly magnetic star the prototype of a class of nondegenerate stellar radio pulsars. While CU Vir is well studied in radio, its high-energy properties are not known. Yet, X-ray emission is expected from stellar magnetospheres and confined stellar winds. Aims. Using X-ray data we aim to test CU Vir for intrinsic X-ray emission and investigate mechanisms responsible for its generation. Methods. We present X-ray observations performed with XMM-Newton and Chandra and study obtained X-ray images, light curves, and spectra. Basic X-ray properties are derived from spectral modelling and are compared with model predictions. In this context we investigate potential thermal and nonthermal X-ray emission scenarios. Results. We detect an X-ray source at the position of CU Vir. With LX approximate to 3 x 10(28) erg s(-1) it is moderately X-ray bright, but the spectrum is extremely hard compared to other Ap stars. Spectral modelling requires multi-component models with predominant hot plasma at temperatures of about T-X = 25MK or, alternatively, a nonthermal spectral component. Both types of model provide a virtually equivalent description of the X-ray spectra. The Chandra observation was performed six years later than those by XMM-Newton, yet the source has similar X-ray flux and spectrum, suggesting a steady and persistent X-ray emission. This is further confirmed by the X-ray light curves that show only mild X-ray variability. Conclusions. CU Vir is also an exceptional star at X-ray energies. To explain its full X-ray properties, a generating mechanism beyond standard explanations, like the presence of a low-mass companion or magnetically confined wind-shocks, is required. Magnetospheric activity might be present or, as proposed for fast-rotating strongly magnetic Bp stars, the X-ray emission of CU Vir is predominantly auroral in nature.}, language = {en} } @article{LetoTrigilioOskinovaetal.2018, author = {Leto, Paolo and Trigilio, C. and Oskinova, Lidia M. and Ignace, R. and Buemi, C. S. and Umana, G. and Ingallinera, A. and Leone, Francesco and Phillips, N. M. and Agliozzo, Claudia and Todt, Helge Tobias and Cerrigone, L.}, title = {A combined multiwavelength VLA/ALMA/Chandra study unveils the complex magnetosphere of the B-type star HR5907}, series = {Monthly notices of the Royal Astronomical Society}, volume = {476}, journal = {Monthly notices of the Royal Astronomical Society}, number = {1}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {0035-8711}, doi = {10.1093/mnras/sty244}, pages = {562 -- 579}, year = {2018}, abstract = {We present new radio/millimeter measurements of the hot magnetic star HR5907 obtained with the VLA and ALMA interferometers. We find that HR5907 is the most radio luminous early type star in the cm-mm band among those presently known. Its multi-wavelength radio light curves are strongly variable with an amplitude that increases with radio frequency. The radio emission can be explained by the populations of the non-thermal electrons accelerated in the current sheets on the outer border of the magnetosphere of this fast-rotating magnetic star. We classify HR5907 as another member of the growing class of strongly magnetic fast-rotating hot stars where the gyro-synchrotron emission mechanism efficiently operates in their magnetospheres. The new radio observations of HR5907 are combined with archival X-ray data to study the physical condition of its magnetosphere. The X-ray spectra of HR5907 show tentative evidence for the presence of non-thermal spectral component. We suggest that non-thermal X-rays originate a stellar X-ray aurora due to streams of non-thermal electrons impacting on the stellar surface. Taking advantage of the relation between the spectral indices of the X-ray power-law spectrum and the non-thermal electron energy distributions, we perform 3-D modelling of the radio emission for HR5907. The wavelength-dependent radio light curves probe magnetospheric layers at different heights above the stellar surface. A detailed comparison between simulated and observed radio light curves leads us to conclude that the stellar magnetic field of HR 5907 is likely non-dipolar, providing further indirect evidence of the complex magnetic field topology of HR5907.}, language = {en} } @article{OskinovaBulikGomezMoran2018, author = {Oskinova, Lidia M. and Bulik, Tomasz and Gomez-Moran, Ada Nebot}, title = {Infrared outbursts as potential tracers of common-envelope events in high-mass X-ray binary formation}, series = {Astronomy and astrophysics : an international weekly journal}, volume = {613}, journal = {Astronomy and astrophysics : an international weekly journal}, publisher = {EDP Sciences}, address = {Les Ulis}, issn = {0004-6361}, doi = {10.1051/0004-6361/201832925}, pages = {7}, year = {2018}, abstract = {Context. Classic massive binary evolutionary scenarios predict that a transitional common-envelope (CE) phase could be preceded as well as succeeded by the evolutionary stage when a binary consists of a compact object and a massive star, that is, a high-mass X-ray binary (HMXB). The observational manifestations of common envelope are poorly constrained. We speculate that its ejection might be observed in some cases as a transient event at mid-infrared (IR) wavelengths. Aims. We estimate the expected numbers of CE ejection events and HMXBs per star formation unit rate, and compare these theoretical estimates with observations. Methods. We compiled a list of 85 mid-IR transients of uncertain nature detected by the Spitzer Infrared Intensive Transients Survey and searched for their associations with X-ray, optical, and UV sources. Results. Confirming our theoretical estimates, we find that only one potential HMXB may be plausibly associated with an IR-transient and tentatively propose that X-ray source NGC4490-X40 could be a precursor to the SPIRITS 16az event. Among other interesting sources, we suggest that the supernova remnant candidate [BWL2012] 063 might be associated with SPIRITS 16ajc. We also find that two SPIRITS events are likely associated with novae, and seven have potential optical counterparts. Conclusions. The massive binary evolutionary scenarios that involve CE events do not contradict currently available observations of IR transients and HMXBs in star-forming galaxies.}, language = {en} }