@phdthesis{Batti2023,
  author    = {Batti, Anil Dominic},
  title     = {Schopenhauer's doctrine of salvation in relation to his critique of religion and philosophical teachings},
  publisher = {Logos},
  address   = {Berlin},
  isbn      = {978-3-83255-735-5},
  school      = {Universit{\"a}t Potsdam},
  pages     = {319},
  year      = {2023},
  abstract  = {Arthur Schopenhauer (1788-1860) was perhaps the last polymath among the great Germanic philosophers. Switching with ease and elegance between epistemic positions and fields as diverse as idealism and empiricism, fideism and rationalism, realism and nominalism, art and religion, jurisprudence and politics, psychology and occultism, Schopenhauer erected an imposing edifice bearing testimony to his universal learning. This study is an investigation into the very conclusion of Schopenhauer's philosophy and endeavours to answer the following question: did Schopenhauer's doctrine of salvation issue forth organically from his intellectual output or was it annexed to his philosophy as a result of his critical engagement with religion? The labyrinthine paths through which Schopenhauer arrives at the soteriological culmination of his philosophy are subjected to critical assessment; the picture that emerges is of a philosopher who seemed convinced that he had solved some of the most pressing cosmic riddles to have tormented mankind through the ages.},
  language  = {en}
}
@phdthesis{BastosLima2023,
  author    = {Bastos Lima, Rita},
  title     = {Seed coat-derived brassnosteroids non-cell autonomously regulate endosperm development},
  school      = {Universit{\"a}t Potsdam},
  pages     = {157},
  year      = {2023},
  language  = {en}
}
@phdthesis{Bastian2023,
  author    = {Bastian, Martin},
  title     = {An emergent machine learning approach for seasonal cyclone activity forecasts},
  school      = {Universit{\"a}t Potsdam},
  pages     = {135},
  year      = {2023},
  abstract  = {Seasonal forecasts are of great interest in many areas. Knowing the amount of precipitation for the upcoming season in regions of water scarcity would facilitate a better water management. If farmers knew the weather conditions of the upcoming summer at sowing time, they could select those cereal species that are best adapted to these conditions. This would allow farmers to improve the harvest and potentially even reduce the amount of pesticides used. However, the undoubted advantages of seasonal forecasts are often opposed by their high degree of uncertainty. The great challenge of generating seasonal forecasts with lead times of several months mainly originates from the chaotic nature of the earth system. In a chaotic system, even tiny differences in the initial conditions can lead to strong deviations in the system's state in the long run. In this dissertation we propose an emergent machine learning approach for seasonal forecasting, called the AnlgModel. The AnlgModel combines the analogue method with myopic feature selection and bootstrapping. To benchmark the abilities of the AnlgModel we apply it to seasonal cyclone activity forecasts in the North Atlantic and Northwest Pacific. The AnlgModel demonstrates competitive hindcast skills with two operational forecasts and even outperforms these for long lead times. In the second chapter we comprehend the forecasting strategy of the Anlg-Model. We thereby analyse the analogue selection process for the 2017 North Atlantic and the 2018 Northwest Pacific seasonal cyclone activity. The analysis shows that those climate indices which are known to influence the seasonal cyclone activity, such as the Ni{\~n}o 3.4 SST, are correctly represented among the selected analogues. Furthermore the selected analogues reflect large-scale climate patterns that were identified by expert reports as being determinative for these particular seasons. In the third chapter we analyse the features that are used by the AnlgModel for its predictions. We therefore inspect the feature relevance (FR). The FR patterns learned by the AnlgModel show a high congruence with the predictor regions used by the operational forecasts. However, the AnlgModel also discovered new features, such as the SST anomaly in the Gulf of Guinea during November. This SST pattern exhibits a remarkably high predictive potential for the upcoming Atlantic hurricane activity. In the final chapter we investigate potential mechanisms, that link two of these regions with high feature relevance to the Atlantic hurricane activity. We mainly focus on ocean surface transport. The ocean surface flow paths are calculated using Lagrangian particle analysis. We demonstrate that the FR patterns in the region of the Canary islands do not correspond with ocean surface transport. It is instead likely that these FR patterns fingerprint a wind transport of latent heat. The second region to be studied is situated in the Gulf of Guinea. Our analysis shows that the FR patterns seen there do fingerprint ocean surface transport. However, our simulations also show that at least one other mechanism is involved in linking the Gulf of Guinea SST anomaly in November to the hurricane activity of the upcoming season. In this work the AnlgModel does not only demonstrate its outstanding forecast skills but also shows its capabilities as research tool for detecting oceanic and atmospheric mechanisms.},
  language  = {en}
}
@phdthesis{Baryzewska2023,
  author    = {Baryzewska, Agata W.},
  title     = {Reconfigurable Janus emulsions as signal transducers for biosensing applications},
  school      = {Universit{\"a}t Potsdam},
  pages     = {133},
  year      = {2023},
  language  = {en}
}
@phdthesis{Bano2023,
  author    = {Bano, Dorina},
  title     = {Discovering data models from event logs},
  doi       = {10.25932/publishup-58542},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-585427},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xvii, 137},
  year      = {2023},
  abstract  = {In the last two decades, process mining has developed from a niche discipline to a significant research area with considerable impact on academia and industry. Process mining enables organisations to identify the running business processes from historical execution data. The first requirement of any process mining technique is an event log, an artifact that represents concrete business process executions in the form of sequence of events. These logs can be extracted from the organization's information systems and are used by process experts to retrieve deep insights from the organization's running processes. Considering the events pertaining to such logs, the process models can be automatically discovered and enhanced or annotated with performance-related information. Besides behavioral information, event logs contain domain specific data, albeit implicitly. However, such data are usually overlooked and, thus, not utilized to their full potential. Within the process mining area, we address in this thesis the research gap of discovering, from event logs, the contextual information that cannot be captured by applying existing process mining techniques. Within this research gap, we identify four key problems and tackle them by looking at an event log from different angles. First, we address the problem of deriving an event log in the absence of a proper database access and domain knowledge. The second problem is related to the under-utilization of the implicit domain knowledge present in an event log that can increase the understandability of the discovered process model. Next, there is a lack of a holistic representation of the historical data manipulation at the process model level of abstraction. Last but not least, each process model presumes to be independent of other process models when discovered from an event log, thus, ignoring possible data dependencies between processes within an organization. For each of the problems mentioned above, this thesis proposes a dedicated method. The first method provides a solution to extract an event log only from the transactions performed on the database that are stored in the form of redo logs. The second method deals with discovering the underlying data model that is implicitly embedded in the event log, thus, complementing the discovered process model with important domain knowledge information. The third method captures, on the process model level, how the data affects the running process instances. Lastly, the fourth method is about the discovery of the relations between business processes (i.e., how they exchange data) from a set of event logs and explicitly representing such complex interdependencies in a business process architecture. All the methods introduced in this thesis are implemented as a prototype and their feasibility is proven by being applied on real-life event logs.},
  language  = {en}
}
@phdthesis{Badetko2023,
  author    = {Badetko, Dominik},
  title     = {Untersuchungen zur Totalsynthese von Arylnaphthalen-Lignanen mittels Photo-Dehydro-Diels-Alder-Reaktion als Schl{\"u}sselschritt},
  doi       = {10.25932/publishup-59306},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-593065},
  school      = {Universit{\"a}t Potsdam},
  pages     = {III, 428},
  year      = {2023},
  abstract  = {Im Rahmen dieser Dissertation wurden die erstmaligen Totalsynthesen der Arylnaphthalen-Lignane Alashinol D, Vitexdoin C, Vitrofolal E, Noralashinol C1 und Ternifoliuslignan E vorgestellt. Der Schl{\"u}sselschritt der entwickelten Methode, basiert auf einer regioselektiven intramolekularen Photo-Dehydro-Diels-Alder (PDDA)-Reaktion, die mittels UV-Strahlung im Durchflussreaktor durchgef{\"u}hrt wurde. Bei der Synthese der PDDA-Vorl{\"a}ufer (Diarylsuberate) wurde eine Synthesestrategie nach dem Baukastenprinzip verfolgt. Diese erm{\"o}glicht die Darstellung asymmetrischer komplexer Systeme aus nur wenigen Grundbausteinen und die Totalsynthese einer Vielzahl an Lignanen. In systematischen Voruntersuchungen konnte zudem die klare {\"U}berlegenheit der intra- gegen{\"u}ber der intermolekularen PDDA-Reaktion aufgezeigt werden. Dabei stellte sich eine Verkn{\"u}pfung der beiden Arylpropiolester {\"u}ber einen Korks{\"a}ureb{\"u}gel, in para-Position, als besonders effizient heraus. Werden asymmetrisch substituierte Diarylsuberate, bei denen einer der endst{\"a}ndigen Estersubstituenten durch eine Trimethylsilyl-Gruppe oder ein Wasserstoffatom ersetzt wurde, verwendet, durchlaufen diese Systeme eine regioselektive Cyclisierung und als Hauptprodukt werden Naphthalenophane mit einem Methylester in 3-Position erhalten. Mit Hilfe von umfangreichen Experimenten zur Funktionalisierung der 4-Position, konnte zudem gezeigt werden, dass die Substitution der nucleophilen Cycloallen-Intermediate, w{\"a}hrend der PDDA-Reaktion, generell durch die Zugabe von N-Halogen-Succinimiden m{\"o}glich ist. In Anbetracht der geringen Ausbeuten haben diese intermolekularen Abfangreaktionen, jedoch keinen pr{\"a}parativen Nutzen f{\"u}r die Totalsynthesen von Lignanen. Mit dem Ziel die allgemeinen photochemischen Reaktionsbedingungen zu optimieren, wurde erstmalig die triplettsensibilisierte PDDA-Reaktion vorgestellt. Durch die Verwendung von Xanthon als Sensibilisator wurde der Einsatz von effizienteren UVA-Lichtquellen erm{\"o}glicht, wodurch die Gefahr einer Photozersetzung durch {\"U}berbestrahlung minimiert wurde. Im Vergleich zur direkten Anregung mit UVB-Strahlung, konnten die Ausbeuten mit indirekter Anregung durch einen Photokatalysator signifikant gesteigert werden. Die grundlegenden Erkenntnisse und die entwickelten Synthesestrategien dieser Arbeit, k{\"o}nnen dazu beitragen zuk{\"u}nftig die Erschließung neuer pharmakologisch interessanter Lignane voranzutreiben. 1 Bisher ist nur die semisynthetische Darstellung von Noralashinol C ausgehend von Hydroxymatairesinol literaturbekannt.},
  language  = {de}
}
@phdthesis{Artins2023,
  author    = {Artins, Anthony},
  title     = {Crosstalk between Target Of Rapamycin (TOR) and sugar signaling in Arabidopsis thaliana},
  school      = {Universit{\"a}t Potsdam},
  pages     = {125},
  year      = {2023},
  language  = {en}
}
@phdthesis{Arntz2023,
  author    = {Arntz, Fabian},
  title     = {Intervention and moderation of physical fitness in children with physical fitness deficits - Results of the SMaRTER study},
  doi       = {10.25932/publishup-62260},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-622607},
  school      = {Universit{\"a}t Potsdam},
  pages     = {169},
  year      = {2023},
  abstract  = {Background: Physical fitness is a key aspect of children's ability to perform activities of daily living, engage in leisure activities, and is associated with important health characteristics. As such, it shows multi-directional associations with weight status as well as executive functions, and varies according to a variety of moderating factors, such as the child's gender, age, geographical location, and socioeconomic conditions and context. The assessment and monitoring of children's physical fitness has gained attention in recent decades, as has the question of how to promote physical fitness through the implementation of a variety of programs and interventions. However, these programs and interventions rarely focus on children with deficits in their physical fitness. Due to their deficits, these children are at the highest risk of suffering health impairments compared to their more average fit peers. In efforts to promote physical fitness, schools could offer promising and viable approaches to interventions, as they provide access to large youth populations while providing useful infrastructure. Evidence suggests that school-based physical fitness interventions, particularly those that include supplementary physical education, are useful for promoting and improving physical fitness in children with normal fitness. However, there is little evidence on whether these interventions have similar or even greater effects on children with deficits in their physical fitness. Furthermore, the question arises whether these measures help to sustainably improve the development/trajectories of physical fitness in these children. The present thesis aims to elucidate the following four objectives: (1) to evaluate the effects of a 14 week intervention with 2 x 45 minutes per week additional remedial physical education on physical fitness and executive function in children with deficits in their physical fitness; (2) to assess moderating effects of body height and body mass on physical fitness components in children with physical fitness deficits; (3) to assess moderating effects of age and skeletal growth on physical fitness in children with physical fitness deficits; and (4) to analyse moderating effects of different physical fitness components on executive function in children with physical fitness deficits. Methods: Using physical fitness data from the EMOTIKON study, 76 third graders with physical fitness deficits were identified in 11 schools in Brandenburg state that met the requirements for implementing a remedial physical education intervention (i.e., employing specially trained physical education teachers). The fitness intervention was implemented in a cross-over design and schools were randomly assigned to either an intervention-control or control-intervention group. The remedial physical education intervention consisted of a 14 week, 2 x 45 minutes per week remedial physical education curriculum supplemented by a physical exercise homework program. Assessments were conducted at the beginning and end of each intervention and control period, and further assessments were conducted at the beginning and end of each school year until the end of sixth grade. Physical fitness as the primary outcome was assessed using fitness tests implemented in the EMOTIKON study (i.e., lower body muscular strength (standing long jump), speed (20 m sprint), cardiorespiratory fitness (6 min run), agility (star run), upper body muscular strength (ball push test), and balance (one leg balance)). Executive functions as a secondary outcome were assessed using attention and psychomotor processing speed (digit symbol substitution test), mental flexibility and fine motor skills (trail making test), and inhibitory control (Simon task). Anthropometric measures such as body height, body mass, maturity offset, and body composition parameters, as well as socioeconomic information were recorded as potential moderators. Results: (1) The evaluation of possible effects of the remedial physical education intervention on physical fitness and executive functions of children with deficits in their physical fitness did not reveal any detectable intervention-related improvements in physical fitness or executive functions. The implemented analysis strategies also showed moderating effects of body mass index (BMI) on performance in 6 min run, star run, and standing long jump, with children with a lower BMI performing better, moderating effects of proximity to Berlin on performance in the 6 min run and standing long jump, better performances being found in children living closer to Berlin, and overall gendered differences in executive function test performance, with boys performing better compared to girls. (2) Analysing moderating effects of body height and body mass on physical fitness performance, better overall physical fitness performance was found for taller children. For body mass, a negative effect was found on performance in the 6 min run (linear), standing long jump (linear), and 20 m sprint (quadratic), with better performance associated with lighter children, and a positive effect of body mass on performance in the ball push test, with heavier children performing better. In addition, the analysis revealed significant interactions between body height and body mass on performance in 6 min run and 20 m sprint, with higher body mass being associated with performance improvements in larger children, while higher body mass was associated with performance declines in smaller children. In addition, the analysis revealed overall age-related improvements in physical fitness and was able to show that children with better overall physical fitness also elicit greater age-related improvements. (3) In the analysis of moderating effects of age and maturity offset on physical fitness performances, two unrotated principal components of z-transformed age and maturity offset values were calculated (i.e., relative growth = (age + maturity offset)/2; growth delay = (age - maturity offset)) to avoid colinearity. Analysing these constructs revealed positive effects of relative growth on performances in star run, 20 m sprint, and standing long jump, with children of higher relative growth performing better. For growth delay, positive effects were found on performances in 6 min run and 20 m sprint, with children having larger growth delays showing better performances. Further, the model revealed gendered differences in 6 min run and 20 m sprint performances with girls performing better than boys. (4) Analysing the effects of physical fitness tests on executive function revealed a positive effect of star run and one leg balance performance and a negative effect of 6 min run performance on reaction speed in the Simon task. However, these effects were not detectable when individual differences were accounted for. Then these effects showed overall positive effects, with better performances being associated with faster reaction speeds. In addition, the analysis revealed a positive correlation between overall reaction speed and effects of the 6 min run, suggesting that children with greater effects of 6 min run had faster overall reaction speeds. Negative correlations were found between star run effects and age effects on Simon task reaction speed, meaning that children with larger star run effects had smaller age effects, and between 6 min run effects and star run effects on Simon task reaction speed, meaning that children with larger 6 min run effects tended to have smaller star run effects on Simon task reaction speed and vice versa. Conclusions: (1) The lack of detectable intervention-related effects could have been caused by an insufficient intervention period, by the implementation of comprehensive and thus non- specific exercises, or by both. Accordingly, longer intervention periods and/or more specific exercises may have been more beneficial and could have led to detectable improvements in physical fitness and/or executive function. However, it remains unclear whether these interventions can benefit children with deficits in physical fitness, as it is possible that their deficits are not caused by a mere lack of exercise, but rather depend on the socioeconomic conditions of the children and their families and areas. Therefore, further research is needed to assess the moderation of physical fitness in children with physical fitness deficits and, in particular, the links between children's environment and their physical fitness trajectories. (2) Findings from this work suggest that using BMI as a composite of body height and body mass may not be able to capture the variation associated with these parameters and their interactions. In particular, because of their multidirectional associations, further research would help elucidate how BMI and its subcomponents influence physical fitness and how they vary between children with and without physical fitness deficits. (3) The assessment of growth- related changes indicated negative effects associated with the growth spurt approaching age of peak height velocity, and furthermore showed significant differences in these effects between children. Thus, these effects and possible interindividual differences should be considered in the assessment of the development of physical fitness in children. (4) Furthermore, this work has shown that the associations between physical fitness and executive functions vary between children and may be moderated by children's socioeconomic conditions and the structure of their daily activities. Further research is needed to explore these associations using approaches that account for individual variance.},
  language  = {en}
}
@phdthesis{ArboledaZapata2023,
  author    = {Arboleda Zapata, Mauricio},
  title     = {Adapted inversion strategies for electrical resistivity data to explore layered near-surface environments},
  doi       = {10.25932/publishup-58135},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-581357},
  school      = {Universit{\"a}t Potsdam},
  pages     = {115},
  year      = {2023},
  abstract  = {The electrical resistivity tomography (ERT) method is widely used to investigate geological, geotechnical, and hydrogeological problems in inland and aquatic environments (i.e., lakes, rivers, and seas). The objective of the ERT method is to obtain reliable resistivity models of the subsurface that can be interpreted in terms of the subsurface structure and petrophysical properties. The reliability of the resulting resistivity models depends not only on the quality of the acquired data, but also on the employed inversion strategy. Inversion of ERT data results in multiple solutions that explain the measured data equally well. Typical inversion approaches rely on different deterministic (local) strategies that consider different smoothing and damping strategies to stabilize the inversion. However, such strategies suffer from the trade-off of smearing possible sharp subsurface interfaces separating layers with resistivity contrasts of up to several orders of magnitude. When prior information (e.g., from outcrops, boreholes, or other geophysical surveys) suggests sharp resistivity variations, it might be advantageous to adapt the parameterization and inversion strategies to obtain more stable and geologically reliable model solutions. Adaptations to traditional local inversions, for example, by using different structural and/or geostatistical constraints, may help to retrieve sharper model solutions. In addition, layer-based model parameterization in combination with local or global inversion approaches can be used to obtain models with sharp boundaries. In this thesis, I study three typical layered near-surface environments in which prior information is used to adapt 2D inversion strategies to favor layered model solutions. In cooperation with the coauthors of Chapters 2-4, I consider two general strategies. Our first approach uses a layer-based model parameterization and a well-established global inversion strategy to generate ensembles of model solutions and assess uncertainties related to the non-uniqueness of the inverse problem. We apply this method to invert ERT data sets collected in an inland coastal area of northern France (Chapter~2) and offshore of two Arctic regions (Chapter~3). Our second approach consists of using geostatistical regularizations with different correlation lengths. We apply this strategy to a more complex subsurface scenario on a local intermountain alluvial fan in southwestern Germany (Chapter~4). Overall, our inversion approaches allow us to obtain resistivity models that agree with the general geological understanding of the studied field sites. These strategies are rather general and can be applied to various geological environments where a layered subsurface structure is expected. The flexibility of our strategies allows adaptations to invert other kinds of geophysical data sets such as seismic refraction or electromagnetic induction methods, and could be considered for joint inversion approaches.},
  language  = {en}
}
@phdthesis{Apriyanto2023,
  author    = {Apriyanto, Ardha},
  title     = {Analysis of starch metabolism in source and sink tissue of plants},
  school      = {Universit{\"a}t Potsdam},
  pages     = {166},
  year      = {2023},
  abstract  = {Starch is an essential biopolymer produced by plants. Starch can be made inside source tissue (such as leaves) and sink tissue (such as fruits and tubers). Nevertheless, understanding how starch metabolism is regulated in source and sink tissues is fundamental for improving crop production. Despite recent advances in the understanding of starch and its metabolism, there is still a knowledge gap in the source and sink metabolism. Therefore, this study aimed to summarize the state of the art regarding starch structure and metabolism inside plants. In addition, this study aimed to elucidate the regulation of starch metabolism in the source tissue using the leaves of a model organism, Arabidopsis thaliana, and the sink tissue of oil palm (Elaeis guineensis) fruit as a commercial crop. The research regarding the source tissue will focus on the effect of the blockage of starch degradation on the starch parameter in leaves, especially in those of A. thaliana, which lack both disproportionating enzyme 2 (DPE2) and plastidial glucan phosphorylase 1 (PHS1) (dpe2/phs1). The additional elimination of phosphoglucan water dikinase (PWD), starch excess 4 (SEX4), isoamylase 3 (ISA3), and disproportionating enzyme 1 (DPE1) in the dpe2/phs1 mutant background demonstrates the alteration of starch granule number per chloroplast. This study provides insights into the control mechanism of granule number regulation in the chloroplast. The research regarding the sink tissue will emphasize the relationship between starch metabolism and the lipid metabolism pathway in oil palm fruits. This study was conducted to observe the alteration of starch parameters, metabolite abundance, and gene expression during oil palm fruit development with different oil yields. This study shows that starch and sucrose can be used as biomarkers for oil yield in oil palms. In addition, it is revealed that the enzyme isoforms related to starch metabolism influence the oil production in oil palm fruit. Overall, this thesis presents novel information regarding starch metabolism in the source tissue of A.thaliana and the sink tissue of E.guineensis. The results shown in this thesis can be applied to many applications, such as modifying the starch parameter in other plants for specific needs.},
  language  = {en}
}
@phdthesis{Amen2023,
  author    = {Amen, Rahma},
  title     = {Adaptive radiation in African weakly electric fish genus Campylomormyrus},
  school      = {Universit{\"a}t Potsdam},
  pages     = {XIV, 155},
  year      = {2023},
  abstract  = {The African weakly electric fish genus Campylomormyrus includes 15 described species mostly native to the Congo River and its tributaries. They are considered sympatric species, because their distribution area overlaps. These species generate species-specific electric organ discharges (EODs) varying in waveform characteristics, including duration, polarity, and phase number. They exhibit also pronounced divergence in their snout, i.e. the length, thickness, and curvature. The diversifications in these two phenotypical traits (EOD and snout) have been proposed as key factors promoting adaptive radiation in Campylomormyrus. The role of EODs as a pre-zygotic isolation mechanism driving sympatric speciation by promoting assortative mating has been examined using behavioral, genetical, and histological approaches. However, the evolutionary effects of the snout morphology and its link to species divergence have not been closely examined. Hence, the main objective of this study is to investigate the effect of snout morphology diversification and its correlated EOD to better understand their sympatric speciation and evolutionary drivers. Moreover, I aim to utilize the intragenus and intergenus hybrids of Campylomormyrus to better understand trait divergence as well as underlying molecular/genetic mechanisms involved in the radiation scenario. To this end, I utilized three different approaches: feeding behavior analysis, diet assessment, and geometric morphometrics analysis. I performed feeding behavior experiments to evaluate the concept of the phenotype-environment correlation by testing whether Campylomormyrus species show substrate preferences. The behavioral experiments showed that the short snout species exhibits preference to sandy substrate, the long snout species prefers a stone substrate, and the species with intermediate snout size does not exhibit any substrate preference. The experiments suggest that the diverse feeding apparatus in the genus Campylomormyrus may have evolved in adaptation to their microhabitats. I also performed diet assessments of sympatric Campylomormyrus species and a sister genus species (Gnathonemus petersii) with markedly different snout morphologies and EOD using NGS-based DNA metabarcoding of their stomach contents. The diet of each species was documented showing that aquatic insects such as dipterans, coleopterans and trichopterans represent the major diet component. The results showed also that all species are able to exploit diverse food niches in their habitats. However, comparing the diet overlap indices showed that different snout morphologies and the associated divergence in the EOD translated into different prey spectra. These results further support the idea that the EOD could be a 'magic trait' triggering both adaptation and reproductive isolation. Geometric morphometrics method was also used to compare the phenotypical shape traits of the F1 intragenus (Campylomormyrus) and intergenus (Campylomormyrus species and Gnathonemus petersii) hybrids relative to their parents. The hybrids of these species were well separated based on the morphological traits, however the hybrid phenotypic traits were closer to the short-snouted species. In addition, the likelihood that the short snout expressed in the hybrids increases with increasing the genetic distance of the parental species. The results confirmed that additive effects produce intermediate phenotypes in F1-hybrids. It seems, therefore, that morphological shape traits in hybrids, unlike the physiological traits, were not expressed straightforward.},
  language  = {en}
}
@phdthesis{Alexoudi2023,
  author    = {Alexoudi, Xanthippi},
  title     = {Clarifying the discrepant results in the characterization of exoplanetary atmospheres},
  doi       = {10.25932/publishup-60565},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-605659},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xvi, 125},
  year      = {2023},
  abstract  = {Planets outside our solar system, so-called "exoplanets", can be detected with different methods, and currently more than 5000 exoplanets have been confirmed, according to NASA Exoplanet Archive. One major highlight of the studies on exoplanets in the past twenty years is the characterization of their atmospheres usingtransmission spectroscopy as the exoplanet transits. However, this characterization is a challenging process and sometimes there are reported discrepancies in the literature regarding the atmosphere of the same exoplanet. One potential reason for the observed atmospheric inconsistencies is called impact parameter degeneracy, and it is highly driven by the limb darkening effect of the host star. A brief introductionto those topics in presented in chapter 1, while the motivation and objectives of thiswork are described in chapter 2.The first goal is to clarify the origin of the transmission spectrum, which is anindicator of an exoplanet's atmosphere; whether it is real or influenced by the impactparameter degeneracy. A second goal is to determine whether photometry from space using the Transiting Exoplanet Survey Satellite (TESS), could improve on the major parameters, which are responsible for the aforementioned degeneracy, of known exoplanetary systems. Three individual projects were conducted in order toaddress those goals. The three manuscripts are presented, in short, in the manuscriptoverview in chapter 3.More specifically, in chapter 4, the first manuscript is presented, which is an ex-tended investigation on the impact parameter degeneracy and its application onsynthetic transmission spectra. Evidently, the limb darkening of the host star isan important driver for this effect. It keeps the degeneracy persisting through different groups of exoplanets, based on the uncertainty of their impact parameter and on the type of their host star. The second goal, was addressed in the second and third manuscripts (chapter 5 and chapter 6 respectively). Using observationsfrom the TESS mission, two samples of exoplanets were studied; 10 transiting inflated hot-Jupiters and 43 transiting grazing systems. Potentially, the refinement or confirmation of their major system parameters' measurements can assist in solving current or future discrepancies regarding their atmospheric characterization.In chapter 7 the conclusions of this work are discussed, while in chapter 8 itis proposed how TESS's measurements can be able to discern between erroneousinterpretations of transmission spectra, especially on systems where the impact parameter degeneracy is likely not applicable.},
  language  = {en}
}
@phdthesis{Albrecht2023,
  author    = {Albrecht, Kim Frederic},
  title     = {Insight by de—sign},
  doi       = {10.25932/publishup-57509},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-575092},
  school      = {Universit{\"a}t Potsdam},
  pages     = {412},
  year      = {2023},
  abstract  = {The calculus of design is a diagrammatic approach towards the relationship between design and insight. The thesis I am evolving is that insights are not discovered, gained, explored, revealed, or mined, but are operatively de—signed. The de in design neglects the contingency of the space towards the sign. The — is the drawing of a distinction within the operation. Space collapses through the negativity of the sign; the command draws a distinction that neglects the space for the form's sake. The operation to de—sign is counterintuitively not the creation of signs, but their removal, the exclusion of possible sign propositions of space. De—sign is thus an act of exclusion; the possibilities of space are crossed into form.},
  language  = {en}
}
@phdthesis{Aktas2023,
  author    = {Aktas, Berfin},
  title     = {Variation in coreference patterns},
  doi       = {10.25932/publishup-59608},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-596086},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xviii, 195},
  year      = {2023},
  abstract  = {This thesis explores the variation in coreference patterns across language modes (i.e., spoken and written) and text genres. The significance of research on variation in language use has been emphasized in a number of linguistic studies. For instance, Biber and Conrad [2009] state that "register/genre variation is a fundamental aspect of human language" and "Given the ubiquity of register/genre variation, an understanding of how linguistic features are used in patterned ways across text varieties is of central importance for both the description of particular languages and the development of cross-linguistic theories of language use."[p.23] We examine the variation across genres with the primary goal of contributing to the body of knowledge on the description of language use in English. On the computational side, we believe that incorporating linguistic knowledge into learning-based systems can boost the performance of automatic natural language processing systems, particularly for non-standard texts. Therefore, in addition to their descriptive value, the linguistic findings we provide in this study may prove to be helpful for improving the performance of automatic coreference resolution, which is essential for a good text understanding and beneficial for several downstream NLP applications, including machine translation and text summarization. In particular, we study a genre of texts that is formed of conversational interactions on the well-known social media platform Twitter. Two factors motivate us: First, Twitter conversations are realized in written form but resemble spoken communication [Scheffler, 2017], and therefore they form an atypical genre for the written mode. Second, while Twitter texts are a complicated genre for automatic coreference resolution, due to their widespread use in the digital sphere, at the same time they are highly relevant for applications that seek to extract information or sentiments from users' messages. Thus, we are interested in discovering more about the linguistic and computational aspects of coreference in Twitter conversations. We first created a corpus of such conversations for this purpose and annotated it for coreference. We are interested in not only the coreference patterns but the overall discourse behavior of Twitter conversations. To address this, in addition to the coreference relations, we also annotated the coherence relations on the corpus we compiled. The corpus is available online in a newly developed form that allows for separating the tweets from their annotations. This study consists of three empirical analyses where we independently apply corpus-based, psycholinguistic and computational approaches for the investigation of variation in coreference patterns in a complementary manner. (1) We first make a descriptive analysis of variation across genres through a corpus-based study. We investigate the linguistic aspects of nominal coreference in Twitter conversations and we determine how this genre relates to other text genres in spoken and written modes. In addition to the variation across genres, studying the differences in spoken-written modes is also in focus of linguistic research since from Woolbert [1922]. (2) In order to investigate whether the language mode alone has any effect on coreference patterns, we carry out a crowdsourced experiment and analyze the patterns in the same genre for both spoken and written modes. (3) Finally, we explore the potentials of domain adaptation of automatic coreference resolution (ACR) for the conversational Twitter data. In order to answer the question of how the genre of Twitter conversations relates to other genres in spoken and written modes with respect to coreference patterns, we employ a state-of-the-art neural ACR model [Lee et al., 2018] to examine whether ACR on Twitter conversations will benefit from mode-based separation in out-of-domain training data.},
  language  = {en}
}
@phdthesis{Akbal2023,
  author    = {Akbal, Zeynep},
  title     = {Lived-Body Experiences in Virtual Reality},
  series = {Digitale Gesellschaft},
  volume    = {61},
  journal   = {Digitale Gesellschaft},
  publisher = {transcript},
  address   = {Bielefeld},
  isbn      = {978-3-8376-6676-2},
  school      = {Universit{\"a}t Potsdam},
  pages     = {210},
  year      = {2023},
  language  = {en}
}
@phdthesis{Agarwal2023,
  author    = {Agarwal, Pallavi},
  title     = {Functional characterization of ROS-responsive genes, ANAC085 and ATR7, in Arabidopsis thaliana},
  school      = {Universit{\"a}t Potsdam},
  pages     = {XVII, 169},
  year      = {2023},
  language  = {en}
}
@phdthesis{Afifi2023,
  author    = {Afifi, Haitham},
  title     = {Wireless In-Network Processing for Multimedia Applications},
  doi       = {10.25932/publishup-60437},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-604371},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xiii, 233},
  year      = {2023},
  abstract  = {With the recent growth of sensors, cloud computing handles the data processing of many applications. Processing some of this data on the cloud raises, however, many concerns regarding, e.g., privacy, latency, or single points of failure. Alternatively, thanks to the development of embedded systems, smart wireless devices can share their computation capacity, creating a local wireless cloud for in-network processing. In this context, the processing of an application is divided into smaller jobs so that a device can run one or more jobs. The contribution of this thesis to this scenario is divided into three parts. In part one, I focus on wireless aspects, such as power control and interference management, for deciding which jobs to run on which node and how to route data between nodes. Hence, I formulate optimization problems and develop heuristic and meta-heuristic algorithms to allocate wireless and computation resources. Additionally, to deal with multiple applications competing for these resources, I develop a reinforcement learning (RL) admission controller to decide which application should be admitted. Next, I look into acoustic applications to improve wireless throughput by using microphone clock synchronization to synchronize wireless transmissions. In the second part, I jointly work with colleagues from the acoustic processing field to optimize both network and application (i.e., acoustic) qualities. My contribution focuses on the network part, where I study the relation between acoustic and network qualities when selecting a subset of microphones for collecting audio data or selecting a subset of optional jobs for processing these data; too many microphones or too many jobs can lessen quality by unnecessary delays. Hence, I develop RL solutions to select the subset of microphones under network constraints when the speaker is moving while still providing good acoustic quality. Furthermore, I show that autonomous vehicles carrying microphones improve the acoustic qualities of different applications. Accordingly, I develop RL solutions (single and multi-agent ones) for controlling these vehicles. In the third part, I close the gap between theory and practice. I describe the features of my open-source framework used as a proof of concept for wireless in-network processing. Next, I demonstrate how to run some algorithms developed by colleagues from acoustic processing using my framework. I also use the framework for studying in-network delays (wireless and processing) using different distributions of jobs and network topologies.},
  language  = {en}
}