@article{Marwan2023, author = {Marwan, Norbert}, title = {Challenges and perspectives in recurrence analyses of event time series}, series = {Frontiers in applied mathematics and statistics}, volume = {9}, journal = {Frontiers in applied mathematics and statistics}, publisher = {Frontiers Media}, address = {Lausanne}, issn = {2297-4687}, doi = {10.3389/fams.2023.1129105}, pages = {7}, year = {2023}, abstract = {The analysis of event time series is in general challenging. Most time series analysis tools are limited for the analysis of this kind of data. Recurrence analysis, a powerful concept from nonlinear time series analysis, provides several opportunities to work with event data and even for the most challenging task of comparing event time series with continuous time series. Here, the basic concept is introduced, the challenges are discussed, and the future perspectives are summarized.}, language = {en} } @article{Pikovskij2021, author = {Pikovskij, Arkadij}, title = {Transition to synchrony in chiral active particles}, series = {Journal of physics. Complexity}, volume = {2}, journal = {Journal of physics. Complexity}, number = {2}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {2632-072X}, doi = {10.1088/2632-072X/abdadb}, pages = {8}, year = {2021}, abstract = {I study deterministic dynamics of chiral active particles in two dimensions. Particles are considered as discs interacting with elastic repulsive forces. An ensemble of particles, started from random initial conditions, demonstrates chaotic collisions resulting in their normal diffusion. This chaos is transient, as rather abruptly a synchronous collisionless state establishes. The life time of chaos grows exponentially with the number of particles. External forcing (periodic or chaotic) is shown to facilitate the synchronization transition.}, language = {en} } @phdthesis{Omelchenko2021, author = {Omelchenko, Oleh}, title = {Synchronit{\"a}t-und-Unordnung-Muster in Netzwerken gekoppelter Oszillatoren}, doi = {10.25932/publishup-53596}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-535961}, school = {Universit{\"a}t Potsdam}, pages = {152}, year = {2021}, abstract = {Synchronization of coupled oscillators manifests itself in many natural and man-made systems, including cyrcadian clocks, central pattern generators, laser arrays, power grids, chemical and electrochemical oscillators, only to name a few. The mathematical description of this phenomenon is often based on the paradigmatic Kuramoto model, which represents each oscillator by one scalar variable, its phase. When coupled, phase oscillators constitute a high-dimensional dynamical system, which exhibits complex behaviour, ranging from synchronized uniform oscillation to quasiperiodicity and chaos. The corresponding collective rhythms can be useful or harmful to the normal operation of various systems, therefore they have been the subject of much research. Initially, synchronization phenomena have been studied in systems with all-to-all (global) and nearest-neighbour (local) coupling, or on random networks. However, in recent decades there has been a lot of interest in more complicated coupling structures, which take into account the spatially distributed nature of real-world oscillator systems and the distance-dependent nature of the interaction between their components. Examples of such systems are abound in biology and neuroscience. They include spatially distributed cell populations, cilia carpets and neural networks relevant to working memory. In many cases, these systems support a rich variety of patterns of synchrony and disorder with remarkable properties that have not been observed in other continuous media. Such patterns are usually referred to as the coherence-incoherence patterns, but in symmetrically coupled oscillator systems they are also known by the name chimera states. The main goal of this work is to give an overview of different types of collective behaviour in large networks of spatially distributed phase oscillators and to develop mathematical methods for their analysis. We focus on the Kuramoto models for one-, two- and three-dimensional oscillator arrays with nonlocal coupling, where the coupling extends over a range wider than nearest neighbour coupling and depends on separation. We use the fact that, for a special (but still quite general) phase interaction function, the long-term coarse-grained dynamics of the above systems can be described by a certain integro-differential equation that follows from the mathematical approach called the Ott-Antonsen theory. We show that this equation adequately represents all relevant patterns of synchrony and disorder, including stationary, periodically breathing and moving coherence-incoherence patterns. Moreover, we show that this equation can be used to completely solve the existence and stability problem for each of these patterns and to reliably predict their main properties in many application relevant situations.}, language = {en} } @article{OcampoEspindolaOmel'chenkoKiss2021, author = {Ocampo-Espindola, Jorge Luis and Omel'chenko, Oleh and Kiss, Istvan Z.}, title = {Non-monotonic transients to synchrony in Kuramoto networks and electrochemical oscillators}, series = {Journal of physics. Complexity}, volume = {2}, journal = {Journal of physics. Complexity}, number = {1}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {2632-072X}, doi = {10.1088/2632-072X/abe109}, pages = {15}, year = {2021}, abstract = {We performed numerical simulations with the Kuramoto model and experiments with oscillatory nickel electrodissolution to explore the dynamical features of the transients from random initial conditions to a fully synchronized (one-cluster) state. The numerical simulations revealed that certain networks (e.g., globally coupled or dense Erdos-Renyi random networks) showed relatively simple behavior with monotonic increase of the Kuramoto order parameter from the random initial condition to the fully synchronized state and that the transient times exhibited a unimodal distribution. However, some modular networks with bridge elements were identified which exhibited non-monotonic variation of the order parameter with local maximum and/or minimum. In these networks, the histogram of the transients times became bimodal and the mean transient time scaled well with inverse of the magnitude of the second largest eigenvalue of the network Laplacian matrix. The non-monotonic transients increase the relative standard deviations from about 0.3 to 0.5, i.e., the transient times became more diverse. The non-monotonic transients are related to generation of phase patterns where the modules are synchronized but approximately anti-phase to each other. The predictions of the numerical simulations were demonstrated in a population of coupled oscillatory electrochemical reactions in global, modular, and irregular tree networks. The findings clarify the role of network structure in generation of complex transients that can, for example, play a role in intermittent desynchronization of the circadian clock due to external cues or in deep brain stimulations where long transients are required after a desynchronization stimulus.}, language = {en} } @article{Pikovskij2021, author = {Pikovskij, Arkadij}, title = {Synchronization of oscillators with hyperbolic chaotic phases}, series = {Izvestija vysšich učebnych zavedenij : naučno-techničeskij žurnal = Izvestiya VUZ. Prikladnaja nelinejnaja dinamika = Applied nonlinear dynamics}, volume = {29}, journal = {Izvestija vysšich učebnych zavedenij : naučno-techničeskij žurnal = Izvestiya VUZ. Prikladnaja nelinejnaja dinamika = Applied nonlinear dynamics}, number = {1}, publisher = {Saratov State University}, address = {Saratov}, issn = {0869-6632}, doi = {10.18500/0869-6632-2021-29-1-78-87}, pages = {78 -- 87}, year = {2021}, abstract = {Topic and aim. Synchronization in populations of coupled oscillators can be characterized with order parameters that describe collective order in ensembles. A dependence of the order parameter on the coupling constants is well-known for coupled periodic oscillators. The goal of the study is to extend this analysis to ensembles of oscillators with chaotic phases, moreover with phases possessing hyperbolic chaos. Models and methods. Two models are studied in the paper. One is an abstract discrete-time map, composed with a hyperbolic Bernoulli transformation and with Kuramoto dynamics. Another model is a system of coupled continuous-time chaotic oscillators, where each individual oscillator has a hyperbolic attractor of Smale-Williams type. Results. The discrete-time model is studied with the Ott-Antonsen ansatz, which is shown to be invariant under the application of the Bernoulli map. The analysis of the resulting map for the order parameter shows, that the asynchronouis state is always stable, but the synchronous one becomes stable above a certain coupling strength. Numerical analysis of the continuous-time model reveals a complex sequence of transitions from an asynchronous state to a completely synchronous hyperbolic chaos, with intermediate stages that include regimes with periodic in time mean field, as well as with weakly and strongly irregular mean field variations. Discussion. Results demonstrate that synchronization of systems with hyperbolic chaos of phases is possible, although a rather strong coupling is required. The approach can be applied to other systems of interacting units with hyperbolic chaotic dynamics.}, language = {en} } @misc{SchaeferBittmann2021, author = {Schaefer, Laura and Bittmann, Frank}, title = {Paired personal interaction reveals objective differences between pushing and holding isometric muscle action}, series = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Humanwissenschaftliche Reihe}, number = {714}, issn = {1866-8364}, doi = {10.25932/publishup-51911}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-519119}, pages = {23}, year = {2021}, abstract = {In sports and movement sciences isometric muscle function is usually measured by pushing against a stable resistance. However, subjectively one can hold or push isometrically. Several investigations suggest a distinction of those forms. The aim of this study was to investigate whether these two forms of isometric muscle action can be distinguished by objective parameters in an interpersonal setting. 20 subjects were grouped in 10 same sex pairs, in which one partner should perform the pushing isometric muscle action (PIMA) and the other partner executed the holding isometric muscle action (HIMA). The partners had contact at the distal forearms via an interface, which included a strain gauge and an acceleration sensor. The mechanical oscillations of the triceps brachii (MMGtri) muscle, its tendon (MTGtri) and the abdominal muscle (MMGobl) were recorded by a piezoelectric-sensor-based measurement system. Each partner performed three 15s (80\% MVIC) and two fatiguing trials (90\% MVIC) during PIMA and HIMA, respectively. Parameters to compare PIMA and HIMA were the mean frequency, the normalized mean amplitude, the amplitude variation, the power in the frequency range of 8 to 15 Hz, a special power-frequency ratio and the number of task failures during HIMA or PIMA (partner who quit the task). A "HIMA failure" occurred in 85\% of trials (p < 0.001). No significant differences between PIMA and HIMA were found for the mean frequency and normalized amplitude. The MMGobl showed significantly higher values of amplitude variation (15s: p = 0.013; fatiguing: p = 0.007) and of power-frequency-ratio (15s: p = 0.040; fatiguing: p = 0.002) during HIMA and a higher power in the range of 8 to 15 Hz during PIMA (15s: p = 0.001; fatiguing: p = 0.011). MMGtri and MTGtri showed no significant differences. Based on the findings it is suggested that a holding and a pushing isometric muscle action can be distinguished objectively, whereby a more complex neural control is assumed for HIMA.}, language = {en} } @article{SchaeferBittmann2021, author = {Schaefer, Laura and Bittmann, Frank}, title = {Paired personal interaction reveals objective differences between pushing and holding isometric muscle action}, series = {PLOS One}, volume = {16}, journal = {PLOS One}, number = {5}, publisher = {PLOS}, address = {San Francisco}, issn = {1932-6203}, doi = {10.1371/journal.pone.0238331}, pages = {21}, year = {2021}, abstract = {In sports and movement sciences isometric muscle function is usually measured by pushing against a stable resistance. However, subjectively one can hold or push isometrically. Several investigations suggest a distinction of those forms. The aim of this study was to investigate whether these two forms of isometric muscle action can be distinguished by objective parameters in an interpersonal setting. 20 subjects were grouped in 10 same sex pairs, in which one partner should perform the pushing isometric muscle action (PIMA) and the other partner executed the holding isometric muscle action (HIMA). The partners had contact at the distal forearms via an interface, which included a strain gauge and an acceleration sensor. The mechanical oscillations of the triceps brachii (MMGtri) muscle, its tendon (MTGtri) and the abdominal muscle (MMGobl) were recorded by a piezoelectric-sensor-based measurement system. Each partner performed three 15s (80\% MVIC) and two fatiguing trials (90\% MVIC) during PIMA and HIMA, respectively. Parameters to compare PIMA and HIMA were the mean frequency, the normalized mean amplitude, the amplitude variation, the power in the frequency range of 8 to 15 Hz, a special power-frequency ratio and the number of task failures during HIMA or PIMA (partner who quit the task). A "HIMA failure" occurred in 85\% of trials (p < 0.001). No significant differences between PIMA and HIMA were found for the mean frequency and normalized amplitude. The MMGobl showed significantly higher values of amplitude variation (15s: p = 0.013; fatiguing: p = 0.007) and of power-frequency-ratio (15s: p = 0.040; fatiguing: p = 0.002) during HIMA and a higher power in the range of 8 to 15 Hz during PIMA (15s: p = 0.001; fatiguing: p = 0.011). MMGtri and MTGtri showed no significant differences. Based on the findings it is suggested that a holding and a pushing isometric muscle action can be distinguished objectively, whereby a more complex neural control is assumed for HIMA.}, language = {en} } @article{Omelʹchenko2020, author = {Omelʹchenko, Oleh E.}, title = {Nonstationary coherence-incoherence patterns in nonlocally coupled heterogeneous phase oscillators}, series = {Chaos : an interdisciplinary journal of nonlinear science}, volume = {30}, journal = {Chaos : an interdisciplinary journal of nonlinear science}, number = {4}, publisher = {American Institute of Physics}, address = {Melville}, issn = {1054-1500}, doi = {10.1063/1.5145259}, pages = {8}, year = {2020}, abstract = {We consider a large ring of nonlocally coupled phase oscillators and show that apart from stationary chimera states, this system also supports nonstationary coherence-incoherence patterns (CIPs). For identical oscillators, these CIPs behave as breathing chimera states and are found in a relatively small parameter region only. It turns out that the stability region of these states enlarges dramatically if a certain amount of spatially uniform heterogeneity (e.g., Lorentzian distribution of natural frequencies) is introduced in the system. In this case, nonstationary CIPs can be studied as stable quasiperiodic solutions of a corresponding mean-field equation, formally describing the infinite system limit. Carrying out direct numerical simulations of the mean-field equation, we find different types of nonstationary CIPs with pulsing and/or alternating chimera-like behavior. Moreover, we reveal a complex bifurcation scenario underlying the transformation of these CIPs into each other. These theoretical predictions are confirmed by numerical simulations of the original coupled oscillator system.}, language = {en} } @article{AgarwalMarwanMaheswaranetal.2020, author = {Agarwal, Ankit and Marwan, Norbert and Maheswaran, Rathinasamy and {\"O}zt{\"u}rk, Ugur and Kurths, J{\"u}rgen and Merz, Bruno}, title = {Optimal design of hydrometric station networks based on complex network analysis}, series = {Hydrology and Earth System Sciences}, volume = {24}, journal = {Hydrology and Earth System Sciences}, number = {5}, publisher = {Copernicus Publ.}, address = {G{\"o}ttingen}, issn = {1027-5606}, doi = {10.5194/hess-24-2235-2020}, pages = {2235 -- 2251}, year = {2020}, abstract = {Hydrometric networks play a vital role in providing information for decision-making in water resource management. They should be set up optimally to provide as much information as possible that is as accurate as possible and, at the same time, be cost-effective. Although the design of hydrometric networks is a well-identified problem in hydrometeorology and has received considerable attention, there is still scope for further advancement. In this study, we use complex network analysis, defined as a collection of nodes interconnected by links, to propose a new measure that identifies critical nodes of station networks. The approach can support the design and redesign of hydrometric station networks. The science of complex networks is a relatively young field and has gained significant momentum over the last few years in different areas such as brain networks, social networks, technological networks, or climate networks. The identification of influential nodes in complex networks is an important field of research. We propose a new node-ranking measure - the weighted degree-betweenness (WDB) measure - to evaluate the importance of nodes in a network. It is compared to previously proposed measures used on synthetic sample networks and then applied to a real-world rain gauge network comprising 1229 stations across Germany to demonstrate its applicability. The proposed measure is evaluated using the decline rate of the network efficiency and the kriging error. The results suggest that WDB effectively quantifies the importance of rain gauges, although the benefits of the method need to be investigated in more detail.}, language = {en} } @misc{AgarwalMarwanMaheswaranetal.2020, author = {Agarwal, Ankit and Marwan, Norbert and Maheswaran, Rathinasamy and {\"O}zt{\"u}rk, Ugur and Kurths, J{\"u}rgen and Merz, Bruno}, title = {Optimal design of hydrometric station networks based on complex network analysis}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch-Naturwissenschaftliche Reihe}, number = {951}, issn = {1866-8372}, doi = {10.25932/publishup-47100}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-471006}, pages = {19}, year = {2020}, abstract = {Hydrometric networks play a vital role in providing information for decision-making in water resource management. They should be set up optimally to provide as much information as possible that is as accurate as possible and, at the same time, be cost-effective. Although the design of hydrometric networks is a well-identified problem in hydrometeorology and has received considerable attention, there is still scope for further advancement. In this study, we use complex network analysis, defined as a collection of nodes interconnected by links, to propose a new measure that identifies critical nodes of station networks. The approach can support the design and redesign of hydrometric station networks. The science of complex networks is a relatively young field and has gained significant momentum over the last few years in different areas such as brain networks, social networks, technological networks, or climate networks. The identification of influential nodes in complex networks is an important field of research. We propose a new node-ranking measure - the weighted degree-betweenness (WDB) measure - to evaluate the importance of nodes in a network. It is compared to previously proposed measures used on synthetic sample networks and then applied to a real-world rain gauge network comprising 1229 stations across Germany to demonstrate its applicability. The proposed measure is evaluated using the decline rate of the network efficiency and the kriging error. The results suggest that WDB effectively quantifies the importance of rain gauges, although the benefits of the method need to be investigated in more detail.}, language = {en} } @phdthesis{Peter2019, author = {Peter, Franziska}, title = {Transition to synchrony in finite Kuramoto ensembles}, doi = {10.25932/publishup-42916}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-429168}, school = {Universit{\"a}t Potsdam}, pages = {vi, 93}, year = {2019}, abstract = {Synchronisation - die Ann{\"a}herung der Rhythmen gekoppelter selbst oszillierender Systeme - ist ein faszinierendes dynamisches Ph{\"a}nomen, das in vielen biologischen, sozialen und technischen Systemen auftritt. Die vorliegende Arbeit befasst sich mit Synchronisation in endlichen Ensembles schwach gekoppelter selbst-erhaltender Oszillatoren mit unterschiedlichen nat{\"u}rlichen Frequenzen. Das Standardmodell f{\"u}r dieses kollektive Ph{\"a}nomen ist das Kuramoto-Modell - unter anderem aufgrund seiner L{\"o}sbarkeit im thermodynamischen Limes unendlich vieler Oszillatoren. {\"A}hnlich einem thermodynamischen Phasen{\"u}bergang zeigt im Fall unendlich vieler Oszillatoren ein Ordnungsparameter den {\"U}bergang von Inkoh{\"a}renz zu einem partiell synchronen Zustand an, in dem ein Teil der Oszillatoren mit einer gemeinsamen Frequenz rotiert. Im endlichen Fall treten Fluktuationen auf. In dieser Arbeit betrachten wir den bisher wenig beachteten Fall von bis zu wenigen hundert Oszillatoren, unter denen vergleichbar starke Fluktuationen auftreten, bei denen aber ein Vergleich zu Frequenzverteilungen im unendlichen Fall m{\"o}glich ist. Zun{\"a}chst definieren wir einen alternativen Ordnungsparameter zur Feststellung einer kollektiven Mode im endlichen Kuramoto-Modell. Dann pr{\"u}fen wir die Abh{\"a}ngigkeit des Synchronisationsgrades und der mittleren Rotationsfrequenz der kollektiven Mode von Eigenschaften der nat{\"u}rlichen Frequenzverteilung f{\"u}r verschiedene Kopplungsst{\"a}rken. Wir stellen dabei zun{\"a}chst numerisch fest, dass der Synchronisationsgrad stark von der Form der Verteilung (gemessen durch die Kurtosis) und die Rotationsfrequenz der kollektiven Mode stark von der Asymmetrie der Verteilung (gemessen durch die Schiefe) der nat{\"u}rlichen Frequenzen abh{\"a}ngt. Beides k{\"o}nnen wir im thermodynamischen Limes analytisch verifizieren. Mit diesen Ergebnissen k{\"o}nnen wir Erkenntnisse anderer Autoren besser verstehen und verallgemeinern. Etwas abseits des roten Fadens dieser Arbeit finden wir außerdem einen analytischen Ausdruck f{\"u}r die Volumenkontraktion im Phasenraum. Der zweite Teil der Arbeit konzentriert sich auf den ordnenden Effekt von Fluktuationen, die durch die Endlichkeit des Systems zustande kommen. Im unendlichen Modell sind die Oszillatoren eindeutig in koh{\"a}rent und inkoh{\"a}rent und damit in geordnet und ungeordnet getrennt. Im endlichen Fall k{\"o}nnen die auftretenden Fluktuationen zus{\"a}tzliche Ordnung unter den asynchronen Oszillatoren erzeugen. Das grundlegende Prinzip, die rauschinduzierte Synchronisation, ist aus einer Reihe von Publikationen bekannt. Unter den gekoppelten Oszillatoren n{\"a}hern sich die Phasen aufgrund der Fluktuationen des Ordnungsparameters an, wie wir einerseits direkt numerisch zeigen und andererseits mit einem Synchronisationsmaß aus der gerichteten Statistik zwischen Paaren passiver Oszillatoren nachweisen. Wir bestimmen die Abh{\"a}ngigkeit dieses Synchronisationsmaßes vom Verh{\"a}ltnis von paarweiser nat{\"u}rlicher Frequenzdifferenz zur Varianz der Fluktuationen. Dabei finden wir eine gute {\"U}bereinstimmung mit einem einfachen analytischen Modell, in welchem wir die deterministischen Fluktuationen des Ordnungsparameters durch weißes Rauschen ersetzen.}, language = {en} } @article{vanVelzenThieserBerendonketal.2018, author = {van Velzen, Ellen and Thieser, Tamara and Berendonk, Thomas U. and Weitere, Markus and Gaedke, Ursula}, title = {Inducible defense destabilizes predator-prey dynamics}, series = {Oikos}, volume = {127}, journal = {Oikos}, number = {11}, publisher = {Wiley}, address = {Hoboken}, issn = {0030-1299}, doi = {10.1111/oik.04868}, pages = {1551 -- 1562}, year = {2018}, abstract = {Phenotypic plasticity in prey can have a dramatic impact on predator-prey dynamics, e.g. by inducible defense against temporally varying levels of predation. Previous work has overwhelmingly shown that this effect is stabilizing: inducible defenses dampen the amplitudes of population oscillations or eliminate them altogether. However, such studies have neglected scenarios where being protected against one predator increases vulnerability to another (incompatible defense). Here we develop a model for such a scenario, using two distinct prey phenotypes and two predator species. Each prey phenotype is defended against one of the predators, and vulnerable to the other. In strong contrast with previous studies on the dynamic effects of plasticity involving a single predator, we find that increasing the level of plasticity consistently destabilizes the system, as measured by the amplitude of oscillations and the coefficients of variation of both total prey and total predator biomasses. We explain this unexpected and seemingly counterintuitive result by showing that plasticity causes synchronization between the two prey phenotypes (and, through this, between the predators), thus increasing the temporal variability in biomass dynamics. These results challenge the common view that plasticity should always have a stabilizing effect on biomass dynamics: adding a single predator-prey interaction to an established model structure gives rise to a system where different mechanisms may be at play, leading to dramatically different outcomes.}, language = {en} } @misc{BolotovSmirnovOsipovetal.2018, author = {Bolotov, Maxim and Smirnov, Lev A. and Osipov, Grigory V. and Pikovskij, Arkadij}, title = {Complex chimera states in a nonlinearly coupled oscillatory medium}, series = {2018 2nd School on Dynamics of Complex Networks and their Application in Intellectual Robotics (DCNAIR)}, journal = {2018 2nd School on Dynamics of Complex Networks and their Application in Intellectual Robotics (DCNAIR)}, publisher = {IEEE}, address = {New York}, isbn = {978-1-5386-5818-5}, doi = {10.1109/DCNAIR.2018.8589210}, pages = {17 -- 20}, year = {2018}, abstract = {We consider chimera states in a one-dimensional medium of nonlinear nonlocally coupled phase oscillators. Stationary inhomogeneous solutions of the Ott-Antonsen equation for a complex order parameter that correspond to fundamental chimeras have been constructed. Stability calculations reveal that only some of these states are stable. The direct numerical simulation has shown that these structures under certain conditions are transformed to breathing chimera regimes because of the development of instability. Further development of instability leads to turbulent chimeras.}, language = {en} } @article{ChristgauSchnor2017, author = {Christgau, Steffen and Schnor, Bettina}, title = {Exploring one-sided communication and synchronization on a non-cache-coherent many-core architecture}, series = {Concurrency and computation : practice \& experience}, volume = {29}, journal = {Concurrency and computation : practice \& experience}, publisher = {Wiley}, address = {Hoboken}, issn = {1532-0626}, doi = {10.1002/cpe.4113}, pages = {15}, year = {2017}, abstract = {The ongoing many-core design aims at core counts where cache coherence becomes a serious challenge. Therefore, this paper discusses how one-sided communication and the required process synchronization can be realized on a non-cache-coherent many-core CPU. The Intel Single-chip Cloud Computer serves as an exemplary hardware architecture. The presented approach is based on software-managed cache coherence for MPI one-sided communication. The prototype implementation delivers a PUT performance of up to 5 times faster than the default message-based approach and reveals a reduction of the communication costs for the NAS Parallel Benchmarks 3-D fast Fourier Transform by a factor of 5. Further, the paper derives conclusions for future non-cache-coherent architectures.}, language = {en} } @misc{ClusellaPolitiRosenblum2016, author = {Clusella, Pau and Politi, Antonio and Rosenblum, Michael}, title = {A minimal model of self-consistent partial synchrony}, series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, journal = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe}, number = {890}, issn = {1866-8372}, doi = {10.25932/publishup-43626}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-436266}, pages = {19}, year = {2016}, abstract = {We show that self-consistent partial synchrony in globally coupled oscillatory ensembles is a general phenomenon. We analyze in detail appearance and stability properties of this state in possibly the simplest setup of a biharmonic Kuramoto-Daido phase model as well as demonstrate the effect in limit-cycle relaxational Rayleigh oscillators. Such a regime extends the notion of splay state from a uniform distribution of phases to an oscillating one. Suitable collective observables such as the Kuramoto order parameter allow detecting the presence of an inhomogeneous distribution. The characteristic and most peculiar property of self-consistent partial synchrony is the difference between the frequency of single units and that of the macroscopic field.}, language = {en} } @article{ClusellaPolitiRosenblum2016, author = {Clusella, Pau and Politi, Antonio and Rosenblum, Michael}, title = {A minimal model of self-consistent partial synchrony}, series = {NEW JOURNAL OF PHYSICS}, volume = {18}, journal = {NEW JOURNAL OF PHYSICS}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {1367-2630}, doi = {10.1088/1367-2630/18/9/093037}, pages = {15}, year = {2016}, abstract = {We show that self-consistent partial synchrony in globally coupled oscillatory ensembles is a general phenomenon. We analyze in detail appearance and stability properties of this state in possibly the simplest setup of a biharmonic Kuramoto-Daido phase model as well as demonstrate the effect in limit-cycle relaxational Rayleigh oscillators. Such a regime extends the notion of splay state from a uniform distribution of phases to an oscillating one. Suitable collective observables such as the Kuramoto order parameter allow detecting the presence of an inhomogeneous distribution. The characteristic and most peculiar property of self-consistent partial synchrony is the difference between the frequency of single units and that of the macroscopic field.}, language = {en} } @book{SchreiberKrahnIngallsetal.2016, author = {Schreiber, Robin and Krahn, Robert and Ingalls, Daniel H. H. and Hirschfeld, Robert}, title = {Transmorphic}, number = {110}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-387-9}, issn = {1613-5652}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-98300}, publisher = {Universit{\"a}t Potsdam}, pages = {100}, year = {2016}, abstract = {Defining Graphical User Interfaces (GUIs) through functional abstractions can reduce the complexity that arises from mutable abstractions. Recent examples, such as Facebook's React GUI framework have shown, how modelling the view as a functional projection from the application state to a visual representation can reduce the number of interacting objects and thus help to improve the reliabiliy of the system. This however comes at the price of a more rigid, functional framework where programmers are forced to express visual entities with functional abstractions, detached from the way one intuitively thinks about the physical world. In contrast to that, the GUI Framework Morphic allows interactions in the graphical domain, such as grabbing, dragging or resizing of elements to evolve an application at runtime, providing liveness and directness in the development workflow. Modelling each visual entity through mutable abstractions however makes it difficult to ensure correctness when GUIs start to grow more complex. Furthermore, by evolving morphs at runtime through direct manipulation we diverge more and more from the symbolic description that corresponds to the morph. Given that both of these approaches have their merits and problems, is there a way to combine them in a meaningful way that preserves their respective benefits? As a solution for this problem, we propose to lift Morphic's concept of direct manipulation from the mutation of state to the transformation of source code. In particular, we will explore the design, implementation and integration of a bidirectional mapping between the graphical representation and a functional and declarative symbolic description of a graphical user interface within a self hosted development environment. We will present Transmorphic, a functional take on the Morphic GUI Framework, where the visual and structural properties of morphs are defined in a purely functional, declarative fashion. In Transmorphic, the developer is able to assemble different morphs at runtime through direct manipulation which is automatically translated into changes in the code of the application. In this way, the comprehensiveness and predictability of direct manipulation can be used in the context of a purely functional GUI, while the effects of the manipulation are reflected in a medium that is always in reach for the programmer and can even be used to incorporate the source transformations into the source files of the application.}, language = {en} } @phdthesis{Vlasov2015, author = {Vlasov, Vladimir}, title = {Synchronization of oscillatory networks in terms of global variables}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-78182}, school = {Universit{\"a}t Potsdam}, pages = {82}, year = {2015}, abstract = {Synchronization of large ensembles of oscillators is an omnipresent phenomenon observed in different fields of science like physics, engineering, life sciences, etc. The most simple setup is that of globally coupled phase oscillators, where all the oscillators contribute to a global field which acts on all oscillators. This formulation of the problem was pioneered by Winfree and Kuramoto. Such a setup gives a possibility for the analysis of these systems in terms of global variables. In this work we describe nontrivial collective dynamics in oscillator populations coupled via mean fields in terms of global variables. We consider problems which cannot be directly reduced to standard Kuramoto and Winfree models. In the first part of the thesis we adopt a method introduced by Watanabe and Strogatz. The main idea is that the system of identical oscillators of particular type can be described by a low-dimensional system of global equations. This approach enables us to perform a complete analytical analysis for a special but vast set of initial conditions. Furthermore, we show how the approach can be expanded for some nonidentical systems. We apply the Watanabe-Strogatz approach to arrays of Josephson junctions and systems of identical phase oscillators with leader-type coupling. In the next parts of the thesis we consider the self-consistent mean-field theory method that can be applied to general nonidentical globally coupled systems of oscillators both with or without noise. For considered systems a regime, where the global field rotates uniformly, is the most important one. With the help of this approach such solutions of the self-consistency equation for an arbitrary distribution of frequencies and coupling parameters can be found analytically in the parametric form, both for noise-free and noisy cases. We apply this method to deterministic Kuramoto-type model with generic coupling and an ensemble of spatially distributed oscillators with leader-type coupling. Furthermore, with the proposed self-consistent approach we fully characterize rotating wave solutions of noisy Kuramoto-type model with generic coupling and an ensemble of noisy oscillators with bi-harmonic coupling. Whenever possible, a complete analysis of global dynamics is performed and compared with direct numerical simulations of large populations.}, language = {en} } @article{VlasovKomarovPikovskij2015, author = {Vlasov, Vladimir and Komarov, Maxim and Pikovskij, Arkadij}, title = {Synchronization transitions in ensembles of noisy oscillators with bi-harmonic coupling}, series = {Journal of physics : A, Mathematical and theoretical}, volume = {48}, journal = {Journal of physics : A, Mathematical and theoretical}, number = {10}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {1751-8113}, doi = {10.1088/1751-8113/48/10/105101}, pages = {16}, year = {2015}, abstract = {We describe synchronization transitions in an ensemble of globally coupled phase oscillators with a bi-harmonic coupling function, and two sources of disorder-diversity of the intrinsic oscillators' frequencies, and external independent noise forces. Based on the self-consistent formulation, we derive analytic solutions for different synchronous states. We report on various non-trivial transitions from incoherence to synchrony, with the following possible scenarios: simple supercritical transition (similar to classical Kuramoto model); subcritical transition with large area of bistability of incoherent and synchronous solutions; appearance of a symmetric two-cluster solution which can coexist with the regular synchronous state. We show that the interplay between relatively small white noise and finite-size fluctuations can lead to metastability of the asynchronous solution.}, language = {en} } @misc{LaubrockKliegl2015, author = {Laubrock, Jochen and Kliegl, Reinhold}, title = {The eye-voice span during reading aloud}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-86904}, year = {2015}, abstract = {Although eye movements during reading are modulated by cognitive processing demands, they also reflect visual sampling of the input, and possibly preparation of output for speech or the inner voice. By simultaneously recording eye movements and the voice during reading aloud, we obtained an output measure that constrains the length of time spent on cognitive processing. Here we investigate the dynamics of the eye-voice span (EVS), the distance between eye and voice. We show that the EVS is regulated immediately during fixation of a word by either increasing fixation duration or programming a regressive eye movement against the reading direction. EVS size at the beginning of a fixation was positively correlated with the likelihood of regressions and refixations. Regression probability was further increased if the EVS was still large at the end of a fixation: if adjustment of fixation duration did not sufficiently reduce the EVS during a fixation, then a regression rather than a refixation followed with high probability. We further show that the EVS can help understand cognitive influences on fixation duration during reading: in mixed model analyses, the EVS was a stronger predictor of fixation durations than either word frequency or word length. The EVS modulated the influence of several other predictors on single fixation durations (SFDs). For example, word-N frequency effects were larger with a large EVS, especially when word N-1 frequency was low. Finally, a comparison of SFDs during oral and silent reading showed that reading is governed by similar principles in both reading modes, although EVS maintenance and articulatory processing also cause some differences. In summary, the EVS is regulated by adjusting fixation duration and/or by programming a regressive eye movement when the EVS gets too large. Overall, the EVS appears to be directly related to updating of the working memory buffer during reading.}, language = {en} }