@phdthesis{Voss2007,
  author    = {Voß, Anja},
  title     = {Untersuchung und Modellierung der Stickstoff- und Phosphorumsatz- und Transportprozesse in mesoskaligen Einzugsgebieten des Tieflandes am Beispiel von Nuthe, Hammerfließ und Stepenitz},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-15481},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {Ziel dieser Arbeit war es, die Stickstoff- und Phosphorprozesse im nordostdeutschen Tiefland detailliert zu untersuchen und Handlungsoptionen hinsichtlich der Landnutzung zur nachhaltigen Steuerung der Stickstoff- und Phosphoreintr{\"a}ge in die Fließgew{\"a}sser aufzuzeigen. Als Grundvoraussetzung f{\"u}r die Modellierung des N{\"a}hrstoffhaushaltes mussten zun{\"a}chst die hydrologischen Prozesse und die Abfl{\"u}sse f{\"u}r die Einzugsgebiete validiert werden. Daf{\"u}r wurde in dieser Arbeit das {\"o}kohydrologische Modell SWIM verwendet. Die Abflussmodellierung umfasste den Zeitraum 1991 - 2000. Die Ergebnisse dazu zeigen, dass SWIM in der Lage war, die hydrologischen Prozesse in den Untersuchungsgebieten ad{\"a}quat wiederzugeben. Auf der Grundlage der Modellierung des Wasserhaushaltes wurden mit SWIM die Stoffumsatzprozesse f{\"u}r den Zeitraum 1996 - 2000 simuliert. Um dabei besonders das Prozessgeschehen im Tiefland zu ber{\"u}cksichtigen, war die Erweiterung von SWIM um einen Ammonium-Pool mit dessen Umsatzprozessen erforderlich. Außerdem wurde der Prozess der N{\"a}hrstoffversickerung so erg{\"a}nzt, dass neben Nitrat auch Ammonium und Phosphat durch das gesamte Bodenprofil verlagert und {\"u}ber die Abflusskomponenten zum Gebietsauslass transportiert werden k{\"o}nnen. Mit diesen Modellerweiterungen konnten die Stickstoff und Phosphorprozesse in den Untersuchungsgebieten gut abgebildet werden. Mit dem so validierten Modell wurden weitere Anwendungen erm{\"o}glicht. N{\"a}hrstoffsimulationen f{\"u}r den Zeitraum 1981 bis 2000 dienten der Untersuchung des abnehmenden Trends in den N{\"a}hrstoffkonzentrationen der Nuthe. Die Untersuchungsergebnisse lassen deutlich erkennen, dass sich die Konzentrationen nach 1990 haupts{\"a}chlich auf Grund der Reduzierung der Eintr{\"a}ge aus punktf{\"o}rmigen Quellen und Rieselfeldern verringert haben. Weitere Modellrechnungen zur Herkunft der N{\"a}hrstoffe haben ergeben, dass Nitrat {\"u}berwiegend aus diffusen Quellen, Ammonium und Phosphat dagegen aus punktf{\"o}rmigen Quellen stammen. Als besonders sensitiv auf die Modellergebnisse haben sich die Parameter zu Landnutzung und -management und die Durchwurzelungstiefe der Pflanzen herausgestellt. Abschließend wurden verschiedene Landnutzungsszenarien angewendet. Die Ergebnisse zu den Szenariorechnungen zeigen, dass fast alle vorgegebenen Landnutzungsszenarien zu einer Verringerung der Stickstoff- bzw. Phosphoremissionen f{\"u}hrten. Die Anwendung von Szenarien, die alle relevanten Zielvorgaben und Empfehlungen zum Ressourcenschutz ber{\"u}cksichtigen, zeigen die gr{\"o}ßten Ver{\"a}nderungen.},
  language  = {de}
}
@book{Voss2008,
  author    = {Voß, Anja},
  title     = {Untersuchung und Modellierung der Stickstoff- und Phosphorumsatz- und Transportprozesse in mesoskaligen Einzugsgebieten des Tieflandes am Beispiel von Nuthe, Hammerfließ und Stepenitz},
  number    = {19},
  publisher = {Universit{\"a}tsverlag Potsdam},
  address   = {Potsdam},
  isbn      = {978-3-940793-13-3},
  issn      = {1434-2375},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-16356},
  publisher      = {Universit{\"a}t Potsdam},
  pages     = {XXI, 170},
  year      = {2008},
  abstract  = {Ziel dieser Arbeit war es, die Stickstoff- und Phosphorprozesse im nordostdeutschen Tiefland detailliert zu untersuchen und Handlungsoptionen hinsichtlich der Landnutzung zur nachhaltigen Steuerung der Stickstoff- und Phosphoreintr{\"a}ge in die Fließgew{\"a}sser aufzuzeigen. Als Grundvoraussetzung f{\"u}r die Modellierung des N{\"a}hrstoffhaushaltes mussten zun{\"a}chst die hydrologischen Prozesse und die Abfl{\"u}sse f{\"u}r die Einzugsgebiete validiert werden. Daf{\"u}r wurde in dieser Arbeit das {\"o}kohydrologische Modell SWIM verwendet. Die Abflussmodellierung umfasste den Zeitraum 1991 - 2000. Die Ergebnisse dazu zeigen, dass SWIM in der Lage war, die hydrologischen Prozesse in den Untersuchungsgebieten ad{\"a}quat wiederzugeben. Auf der Grundlage der Modellierung des Wasserhaushaltes wurden mit SWIM die Stoffumsatzprozesse f{\"u}r den Zeitraum 1996 - 2000 simuliert. Um dabei besonders das Prozessgeschehen im Tiefland zu ber{\"u}cksichtigen, war die Erweiterung von SWIM um einen Ammonium-Pool mit dessen Umsatzprozessen erforderlich. Außerdem wurde der Prozess der N{\"a}hrstoffversickerung so erg{\"a}nzt, dass neben Nitrat auch Ammonium und Phosphat durch das gesamte Bodenprofil verlagert und {\"u}ber die Abflusskomponenten zum Gebietsauslass transportiert werden k{\"o}nnen. Mit diesen Modellerweiterungen konnten die Stickstoff und Phosphorprozesse in den Untersuchungsgebieten gut abgebildet werden. Mit dem so validierten Modell wurden weitere Anwendungen erm{\"o}glicht. N{\"a}hrstoffsimulationen f{\"u}r den Zeitraum 1981 bis 2000 dienten der Untersuchung des abnehmenden Trends in den N{\"a}hrstoffkonzentrationen der Nuthe. Die Untersuchungsergebnisse lassen deutlich erkennen, dass sich die Konzentrationen nach 1990 haupts{\"a}chlich auf Grund der Reduzierung der Eintr{\"a}ge aus punktf{\"o}rmigen Quellen und Rieselfeldern verringert haben. Weitere Modellrechnungen zur Herkunft der N{\"a}hrstoffe haben ergeben, dass Nitrat {\"u}berwiegend aus diffusen Quellen, Ammonium und Phosphat dagegen aus punktf{\"o}rmigen Quellen stammen. Als besonders sensitiv auf die Modellergebnisse haben sich die Parameter zu Landnutzung und -management und die Durchwurzelungstiefe der Pflanzen herausgestellt. Abschließend wurden verschiedene Landnutzungsszenarien angewendet. Die Ergebnisse zu den Szenariorechnungen zeigen, dass fast alle vorgegebenen Landnutzungsszenarien zu einer Verringerung der Stickstoff- bzw. Phosphoremissionen f{\"u}hrten. Die Anwendung von Szenarien, die alle relevanten Zielvorgaben und Empfehlungen zum Ressourcenschutz ber{\"u}cksichtigen, zeigen die gr{\"o}ßten Ver{\"a}nderungen.},
  language  = {de}
}
@phdthesis{Grimbs2009,
  author    = {Grimbs, Sergio},
  title     = {Towards structure and dynamics of metabolic networks},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-32397},
  school      = {Universit{\"a}t Potsdam},
  year      = {2009},
  abstract  = {This work presents mathematical and computational approaches to cover various aspects of metabolic network modelling, especially regarding the limited availability of detailed kinetic knowledge on reaction rates. It is shown that precise mathematical formulations of problems are needed i) to find appropriate and, if possible, efficient algorithms to solve them, and ii) to determine the quality of the found approximate solutions. Furthermore, some means are introduced to gain insights on dynamic properties of metabolic networks either directly from the network structure or by additionally incorporating steady-state information. Finally, an approach to identify key reactions in a metabolic networks is introduced, which helps to develop simple yet useful kinetic models. The rise of novel techniques renders genome sequencing increasingly fast and cheap. In the near future, this will allow to analyze biological networks not only for species but also for individuals. Hence, automatic reconstruction of metabolic networks provides itself as a means for evaluating this huge amount of experimental data. A mathematical formulation as an optimization problem is presented, taking into account existing knowledge and experimental data as well as the probabilistic predictions of various bioinformatical methods. The reconstructed networks are optimized for having large connected components of high accuracy, hence avoiding fragmentation into small isolated subnetworks. The usefulness of this formalism is exemplified on the reconstruction of the sucrose biosynthesis pathway in Chlamydomonas reinhardtii. The problem is shown to be computationally demanding and therefore necessitates efficient approximation algorithms. The problem of minimal nutrient requirements for genome-scale metabolic networks is analyzed. Given a metabolic network and a set of target metabolites, the inverse scope problem has as it objective determining a minimal set of metabolites that have to be provided in order to produce the target metabolites. These target metabolites might stem from experimental measurements and therefore are known to be produced by the metabolic network under study, or are given as the desired end-products of a biotechological application. The inverse scope problem is shown to be computationally hard to solve. However, I assume that the complexity strongly depends on the number of directed cycles within the metabolic network. This might guide the development of efficient approximation algorithms. Assuming mass-action kinetics, chemical reaction network theory (CRNT) allows for eliciting conclusions about multistability directly from the structure of metabolic networks. Although CRNT is based on mass-action kinetics originally, it is shown how to incorporate further reaction schemes by emulating molecular enzyme mechanisms. CRNT is used to compare several models of the Calvin cycle, which differ in size and level of abstraction. Definite results are obtained for small models, but the available set of theorems and algorithms provided by CRNT can not be applied to larger models due to the computational limitations of the currently available implementations of the provided algorithms. Given the stoichiometry of a metabolic network together with steady-state fluxes and concentrations, structural kinetic modelling allows to analyze the dynamic behavior of the metabolic network, even if the explicit rate equations are not known. In particular, this sampling approach is used to study the stabilizing effects of allosteric regulation in a model of human erythrocytes. Furthermore, the reactions of that model can be ranked according to their impact on stability of the steady state. The most important reactions in that respect are identified as hexokinase, phosphofructokinase and pyruvate kinase, which are known to be highly regulated and almost irreversible. Kinetic modelling approaches using standard rate equations are compared and evaluated against reference models for erythrocytes and hepatocytes. The results from this simplified kinetic models can simulate acceptably the temporal behavior for small changes around a given steady state, but fail to capture important characteristics for larger changes. The aforementioned approach to rank reactions according to their influence on stability is used to identify a small number of key reactions. These reactions are modelled in detail, including knowledge about allosteric regulation, while all other reactions were still described by simplified reaction rates. These so-called hybrid models can capture the characteristics of the reference models significantly better than the simplified models alone. The resulting hybrid models might serve as a good starting point for kinetic modelling of genome-scale metabolic networks, as they provide reasonable results in the absence of experimental data, regarding, for instance, allosteric regulations, for a vast majority of enzymatic reactions.},
  language  = {en}
}
@misc{Jackisch2007,
  type      = {Master Thesis},
  author    = {Jackisch, Conrad},
  title     = {Towards applied modeling of the human-eco-system an approach of hydrology based integrated modeling of a semi-arid sub-catchment in rural north-west India},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-13513},
  school      = {Universit{\"a}t Potsdam},
  year      = {2007},
  abstract  = {The development of rural areas concerning food security, sustainability and social-economic stability is key issue to the globalized community. Regarding the current state of climatic change, especially semi-arid regions in uenced by monsoon or El Ni{\~n}o are prone to extreme weather events. Droughts, ooding, erosion, degradation of soils and water quality and deserti cation are some of the common impacts. State of the art in hydrologic environmental modeling is generally operating under a reductionist paradigm (Sivapalan 2005). Even an enormous quantity of process-oriented models exists, we fail in due reproduction of complexly interacting processes in their effective scale in the space-time-continuum, as they are described through deterministic small-scale process theories (e.g. Beven 2002). Yet large amounts of parameters - with partly doubtful physical expression - and input data are needed. In contradiction to that most soft information about patterns and organizing principles cannot be employed (Seibert and McDonnell 2002). For an analysis of possible strategies on the one hand towards integrated hydrologic modeling as decision support and on the other hand for sustainable land use development the 512 km2 large catchment of the Mod river in Jhabua, Madhya Pradesh, India has been chosen. It is characterized by a setting of common problems of peripheral rural semi-arid human-eco-systems with intensive agriculture, deforestation, droughts and general hardship for the people. Scarce data and missing gauges are adding to the requirements of data acquisition and process description. The study at hand presents a methodical framework to combine eld scale data analysis and remote sensing for the setup of a database focusing plausibility over strict data accuracy. The catena-based hydrologic model WASA (G{\"u}ntner 2002) employes this database. It is expanded by a routine for crop development simulation after the de Wit approach (e.g. in Bouman et al. 1996). For its application as decision support system an agentbased land use algorithm is developed which decides on base of site speci cations and certain constraints (like maximum pro t or best local adaptation) about the cropping. The new model is employed to analyze (some) land use strategies. Not anticipated and a priori de ned scenarios will account for the realization of the model but the interactions within the system. This study points out possible approaches to enhance the situation in the catchment. It also approaches central questions of ways towards due integrated hydrological modeling on catchment scale for ungauged conditions and to overcome current paradigms.},
  language  = {en}
}
@phdthesis{RodriguezPiceda2022,
  author    = {Rodriguez Piceda, Constanza},
  title     = {Thermomechanical state of the southern Central Andes},
  doi       = {10.25932/publishup-54927},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-549275},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xx, 228},
  year      = {2022},
  abstract  = {The Andes are a ~7000 km long N-S trending mountain range developed along the South American western continental margin. Driven by the subduction of the oceanic Nazca plate beneath the continental South American plate, the formation of the northern and central parts of the orogen is a type case for a non-collisional orogeny. In the southern Central Andes (SCA, 29°S-39°S), the oceanic plate changes the subduction angle between 33°S and 35°S from almost horizontal (< 5° dip) in the north to a steeper angle (~30° dip) in the south. This sector of the Andes also displays remarkable along- and across- strike variations of the tectonic deformation patterns. These include a systematic decrease of topographic elevation, of crustal shortening and foreland and orogenic width, as well as an alternation of the foreland deformation style between thick-skinned and thin-skinned recorded along- and across the strike of the subduction zone. Moreover, the SCA are a very seismically active region. The continental plate is characterized by a relatively shallow seismicity (< 30 km depth) which is mainly focussed at the transition from the orogen to the lowland areas of the foreland and the forearc; in contrast, deeper seismicity occurs below the interiors of the northern foreland. Additionally, frequent seismicity is also recorded in the shallow parts of the oceanic plate and in a sector of the flat slab segment between 31°S and 33°S. The observed spatial heterogeneity in tectonic and seismic deformation in the SCA has been attributed to multiple causes, including variations in sediment thickness, the presence of inherited structures and changes in the subduction angle of the oceanic slab. However, there is no study that inquired the relationship between the long-term rheological configuration of the SCA and the spatial deformation patterns. Moreover, the effects of the density and thickness configuration of the continental plate and of variations in the slab dip angle in the rheological state of the lithosphere have been not thoroughly investigated yet. Since rheology depends on composition, pressure and temperature, a detailed characterization of the compositional, structural and thermal fields of the lithosphere is needed. Therefore, by using multiple geophysical approaches and data sources, I constructed the following 3D models of the SCA lithosphere: (i) a seismically-constrained structural and density model that was tested against the gravity field; (ii) a thermal model integrating the conversion of mantle shear-wave velocities to temperature with steady-state conductive calculations in the uppermost lithosphere (< 50 km depth), validated by temperature and heat-flow measurements; and (iii) a rheological model of the long-term lithospheric strength using as input the previously-generated models. The results of this dissertation indicate that the present-day thermal and rheological fields of the SCA are controlled by different mechanisms at different depths. At shallow depths (< 50 km), the thermomechanical field is modulated by the heterogeneous composition of the continental lithosphere. The overprint of the oceanic slab is detectable where the oceanic plate is shallow (< 85 km depth) and the radiogenic crust is thin, resulting in overall lower temperatures and higher strength compared to regions where the slab is steep and the radiogenic crust is thick. At depths > 50 km, largest temperatures variations occur where the descending slab is detected, which implies that the deep thermal field is mainly affected by the slab dip geometry. The outcomes of this thesis suggests that long-term thermomechanical state of the lithosphere influences the spatial distribution of seismic deformation. Most of the seismicity within the continental plate occurs above the modelled transition from brittle to ductile conditions. Additionally, there is a spatial correlation between the location of these events and the transition from the mechanically strong domains of the forearc and foreland to the weak domain of the orogen. In contrast, seismicity within the oceanic plate is also detected where long-term ductile conditions are expected. I therefore analysed the possible influence of additional mechanisms triggering these earthquakes, including the compaction of sediments in the subduction interface and dehydration reactions in the slab. To that aim, I carried out a qualitative analysis of the state of hydration in the mantle using the ratio between compressional- and shear-wave velocity (vp/vs ratio) from a previous seismic tomography. The results from this analysis indicate that the majority of the seismicity spatially correlates with hydrated areas of the slab and overlying continental mantle, with the exception of the cluster within the flat slab segment. In this region, earthquakes are likely triggered by flexural processes where the slab changes from a flat to a steep subduction angle. First-order variations in the observed tectonic patterns also seem to be influenced by the thermomechanical configuration of the lithosphere. The mechanically strong domains of the forearc and foreland, due to their resistance to deformation, display smaller amounts of shortening than the relatively weak orogenic domain. In addition, the structural and thermomechanical characteristics modelled in this dissertation confirm previous analyses from geodynamic models pointing to the control of the observed heterogeneities in the orogen and foreland deformation style. These characteristics include the lithospheric and crustal thickness, the presence of weak sediments and the variations in gravitational potential energy. Specific conditions occur in the cold and strong northern foreland, which is characterized by active seismicity and thick-skinned structures, although the modelled crustal strength exceeds the typical values of externally-applied tectonic stresses. The additional mechanisms that could explain the strain localization in a region that should resist deformation are: (i) increased tectonic forces coming from the steepening of the slab and (ii) enhanced weakening along inherited structures from pre-Andean deformation events. Finally, the thermomechanical conditions of this sector of the foreland could be a key factor influencing the preservation of the flat subduction angle at these latitudes of the SCA.},
  language  = {en}
}
@phdthesis{Jechow2009,
  author    = {Jechow, Andreas},
  title     = {Tailoring the emission of stripe-array diode lasers with external cavities to enable nonlinear frequency conversion},
  publisher = {Universit{\"a}tsverlag Potsdam},
  address   = {Potsdam},
  isbn      = {978-3-86956-031-1},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-39653},
  school      = {Universit{\"a}t Potsdam},
  pages     = {ii, 139},
  year      = {2009},
  abstract  = {A huge number of applications require coherent radiation in the visible spectral range. Since diode lasers are very compact and efficient light sources, there exists a great interest to cover these applications with diode laser emission. Despite modern band gap engineering not all wavelengths can be accessed with diode laser radiation. Especially in the visible spectral range between 480 nm and 630 nm no emission from diode lasers is available, yet. Nonlinear frequency conversion of near-infrared radiation is a common way to generate coherent emission in the visible spectral range. However, radiation with extraordinary spatial temporal and spectral quality is required to pump frequency conversion. Broad area (BA) diode lasers are reliable high power light sources in the near-infrared spectral range. They belong to the most efficient coherent light sources with electro-optical efficiencies of more than 70\%. Standard BA lasers are not suitable as pump lasers for frequency conversion because of their poor beam quality and spectral properties. For this purpose, tapered lasers and diode lasers with Bragg gratings are utilized. However, these new diode laser structures demand for additional manufacturing and assembling steps that makes their processing challenging and expensive. An alternative to BA diode lasers is the stripe-array architecture. The emitting area of a stripe-array diode laser is comparable to a BA device and the manufacturing of these arrays requires only one additional process step. Such a stripe-array consists of several narrow striped emitters realized with close proximity. Due to the overlap of the fields of neighboring emitters or the presence of leaky waves, a strong coupling between the emitters exists. As a consequence, the emission of such an array is characterized by a so called supermode. However, for the free running stripe-array mode competition between several supermodes occurs because of the lack of wavelength stabilization. This leads to power fluctuations, spectral instabilities and poor beam quality. Thus, it was necessary to study the emission properties of those stripe-arrays to find new concepts to realize an external synchronization of the emitters. The aim was to achieve stable longitudinal and transversal single mode operation with high output powers giving a brightness sufficient for efficient nonlinear frequency conversion. For this purpose a comprehensive analysis of the stripe-array devices was done here. The physical effects that are the origin of the emission characteristics were investigated theoretically and experimentally. In this context numerical models could be verified and extended. A good agreement between simulation and experiment was observed. One way to stabilize a specific supermode of an array is to operate it in an external cavity. Based on mathematical simulations and experimental work, it was possible to design novel external cavities to select a specific supermode and stabilize all emitters of the array at the same wavelength. This resulted in stable emission with 1 W output power, a narrow bandwidth in the range of 2 MHz and a very good beam quality with M²<1.5. This is a new level of brightness and brilliance compared to other BA and stripe-array diode laser systems. The emission from this external cavity diode laser (ECDL) satisfied the requirements for nonlinear frequency conversion. Furthermore, a huge improvement to existing concepts was made. In the next step newly available periodically poled crystals were used for second harmonic generation (SHG) in single pass setups. With the stripe-array ECDL as pump source, more than 140 mW of coherent radiation at 488 nm could be generated with a very high opto-optical conversion efficiency. The generated blue light had very good transversal and longitudinal properties and could be used to generate biphotons by parametric down-conversion. This was feasible because of the improvement made with the infrared stripe-array diode lasers due to the development of new physical concepts.},
  language  = {en}
}
@phdthesis{Polyvyanyy2012,
  author    = {Polyvyanyy, Artem},
  title     = {Structuring process models},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-59024},
  school      = {Universit{\"a}t Potsdam},
  year      = {2012},
  abstract  = {One can fairly adopt the ideas of Donald E. Knuth to conclude that process modeling is both a science and an art. Process modeling does have an aesthetic sense. Similar to composing an opera or writing a novel, process modeling is carried out by humans who undergo creative practices when engineering a process model. Therefore, the very same process can be modeled in a myriad number of ways. Once modeled, processes can be analyzed by employing scientific methods. Usually, process models are formalized as directed graphs, with nodes representing tasks and decisions, and directed arcs describing temporal constraints between the nodes. Common process definition languages, such as Business Process Model and Notation (BPMN) and Event-driven Process Chain (EPC) allow process analysts to define models with arbitrary complex topologies. The absence of structural constraints supports creativity and productivity, as there is no need to force ideas into a limited amount of available structural patterns. Nevertheless, it is often preferable that models follow certain structural rules. A well-known structural property of process models is (well-)structuredness. A process model is (well-)structured if and only if every node with multiple outgoing arcs (a split) has a corresponding node with multiple incoming arcs (a join), and vice versa, such that the set of nodes between the split and the join induces a single-entry-single-exit (SESE) region; otherwise the process model is unstructured. The motivations for well-structured process models are manifold: (i) Well-structured process models are easier to layout for visual representation as their formalizations are planar graphs. (ii) Well-structured process models are easier to comprehend by humans. (iii) Well-structured process models tend to have fewer errors than unstructured ones and it is less probable to introduce new errors when modifying a well-structured process model. (iv) Well-structured process models are better suited for analysis with many existing formal techniques applicable only for well-structured process models. (v) Well-structured process models are better suited for efficient execution and optimization, e.g., when discovering independent regions of a process model that can be executed concurrently. Consequently, there are process modeling languages that encourage well-structured modeling, e.g., Business Process Execution Language (BPEL) and ADEPT. However, the well-structured process modeling implies some limitations: (i) There exist processes that cannot be formalized as well-structured process models. (ii) There exist processes that when formalized as well-structured process models require a considerable duplication of modeling constructs. Rather than expecting well-structured modeling from start, we advocate for the absence of structural constraints when modeling. Afterwards, automated methods can suggest, upon request and whenever possible, alternative formalizations that are "better" structured, preferably well-structured. In this thesis, we study the problem of automatically transforming process models into equivalent well-structured models. The developed transformations are performed under a strong notion of behavioral equivalence which preserves concurrency. The findings are implemented in a tool, which is publicly available.},
  language  = {en}
}
@phdthesis{Kooten2023,
  author    = {Kooten, Willemijn Sarah Maria Theresia van},
  title     = {Structural inheritance of the Salta Rift basin and its control on exhumation patterns of the Eastern Cordillera between 23 and 24°S},
  doi       = {10.25932/publishup-61798},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-617983},
  school      = {Universit{\"a}t Potsdam},
  pages     = {XIX, 188},
  year      = {2023},
  abstract  = {The deformation style of mountain belts is greatly influenced by the upper plate architecture created during preceding deformation phases. The Mesozoic Salta Rift extensional phase has created a dominant structural and lithological framework that controls Cenozoic deformation and exhumation patterns in the Central Andes. Studying the nature of these pre-existing anisotropies is a key to understanding the spatiotemporal distribution of exhumation and its controlling factors. The Eastern Cordillera in particular, has a structural grain that is in part controlled by Salta Rift structures and their orientation relative to Andean shortening. As a result, there are areas in which Andean deformation prevails and areas where the influence of the Salta Rift is the main control on deformation patterns. Between 23 and 24°S, lithological and structural heterogeneities imposed by the Lomas de Olmedo sub-basin (Salta Rift basin) affect the development of the Eastern Cordillera fold-and-thrust belt. The inverted northern margin of the sub-basin now forms the southern boundary of the intermontane Cianzo basin. The former western margin of the sub-basin is located at the confluence of the Subandean Zone, the Santa Barbara System and the Eastern Cordillera. Here, the Salta Rift basin architecture is responsible for the distribution of these morphotectonic provinces. In this study we use a multi-method approach consisting of low-temperature (U-Th-Sm)/He and apatite fission track thermochronology, detrital geochronology, structural and sedimentological analyses to investigate the Mesozoic structural inheritance of the Lomas de Olmedo sub-basin and Cenozoic exhumation patterns. Characterization of the extension-related Tacur{\´u} Group as an intermediate succession between Paleozoic basement and the syn-rift infill of the Lomas de Olmedo sub-basin reveals a Jurassic maximum depositional age. Zircon (U-Th-Sm)/He cooling ages record a pre-Cretaceous onset of exhumation for the rift shoulders in the northern part of the sub-basin, whereas the western shoulder shows a more recent onset (140-115 Ma). Variations in the sedimentary thickness of syn- and post-rift strata document the evolution of accommodation space in the sub-basin. While the thickness of syn-rift strata increases rapidly toward the northern basin margin, the post-rift strata thickness decreases toward the margin and forms a condensed section on the rift shoulder. Inversion of Salta Rift structures commenced between the late Oligocene and Miocene (24-15 Ma) in the ranges surrounding the Cianzo basin. The eastern and western limbs of the Cianzo syncline, located in the hanging wall of the basin-bounding Hornocal fault, show diachronous exhumation. At the same time, western fault blocks of Tilcara Range, south of the Cianzo basin, began exhuming in the late Oligocene to early Miocene (26-16 Ma). Eastward propagation to the frontal thrust and to the Paleozoic strata east of the Tilcara Range occurred in the middle Miocene (22-10 Ma) and the late Miocene-early Pliocene (10-4 Ma), respectively.},
  language  = {en}
}
@phdthesis{Raatz2019,
  author    = {Raatz, Michael},
  title     = {Strategies within predator-prey interactions - from individuals to ecosystems},
  doi       = {10.25932/publishup-42658},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-426587},
  school      = {Universit{\"a}t Potsdam},
  pages     = {175},
  year      = {2019},
  abstract  = {Predator-prey interactions provide central links in food webs. These interaction are directly or indirectly impacted by a number of factors. These factors range from physiological characteristics of individual organisms, over specifics of their interaction to impacts of the environment. They may generate the potential for the application of different strategies by predators and prey. Within this thesis, I modelled predator-prey interactions and investigated a broad range of different factors driving the application of certain strategies, that affect the individuals or their populations. In doing so, I focused on phytoplankton-zooplankton systems as established model systems of predator-prey interactions. At the level of predator physiology I proposed, and partly confirmed, adaptations to fluctuating availability of co-limiting nutrients as beneficial strategies. These may allow to store ingested nutrients or to regulate the effort put into nutrient assimilation. We found that these two strategies are beneficial at different fluctuation frequencies of the nutrients, but may positively interact at intermediate frequencies. The corresponding experiments supported our model results. We found that the temporal structure of nutrient fluctuations indeed has strong effects on the juvenile somatic growth rate of {\itshape Daphnia}. Predator colimitation by energy and essential biochemical nutrients gave rise to another physiological strategy. High-quality prey species may render themselves indispensable in a scenario of predator-mediated coexistence by being the only source of essential biochemical nutrients, such as cholesterol. Thereby, the high-quality prey may even compensate for a lacking defense and ensure its persistence in competition with other more defended prey species. We found a similar effect in a model where algae and bacteria compete for nutrients. Now, being the only source of a compound that is required by the competitor (bacteria) prevented the competitive exclusion of the algae. In this case, the essential compounds were the organic carbon provided by the algae. Here again, being indispensable served as a prey strategy that ensured its coexistence. The latter scenario also gave rise to the application of the two metabolic strategies of autotrophy and heterotrophy by algae and bacteria, respectively. We found that their coexistence allowed the recycling of resources in a microbial loop that would otherwise be lost. Instead, these resources were made available to higher trophic levels, increasing the trophic transfer efficiency in food webs. The predation process comprises the next higher level of factors shaping the predator-prey interaction, besides these factors that originated from the functioning or composition of individuals. Here, I focused on defensive mechanisms and investigated multiple scenarios of static or adaptive combinations of prey defense and predator offense. I confirmed and extended earlier reports on the coexistence-promoting effects of partially lower palatability of the prey community. When bacteria and algae are coexisting, a higher palatability of bacteria may increase the average predator biomass, with the side effect of making the population dynamics more regular. This may facilitate experimental investigations and interpretations. If defense and offense are adaptive, this allows organisms to maximize their growth rate. Besides this fitness-enhancing effect, I found that co-adaptation may provide the predator-prey system with the flexibility to buffer external perturbations. On top of these rather internal factors, environmental drivers also affect predator-prey interactions. I showed that environmental nutrient fluctuations may create a spatio-temporal resource heterogeneity that selects for different predator strategies. I hypothesized that this might favour either storage or acclimation specialists, depending on the frequency of the environmental fluctuations. We found that many of these factors promote the coexistence of different strategies and may therefore support and sustain biodiversity. Thus, they might be relevant for the maintenance of crucial ecosystem functions that also affect us humans. Besides this, the richness of factors that impact predator-prey interactions might explain why so many species, especially in the planktonic regime, are able to coexist.},
  language  = {en}
}
@phdthesis{Zaehle2005,
  author    = {Zaehle, S{\"o}nke},
  title     = {Process-based simulation of the terrestrial biosphere : an evaluation of present-day and future terrestrial carbon balance estimates and their uncertainty},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-5263},
  school      = {Universit{\"a}t Potsdam},
  year      = {2005},
  abstract  = {At present, carbon sequestration in terrestrial ecosystems slows the growth rate of atmospheric CO2 concentrations, and thereby reduces the impact of anthropogenic fossil fuel emissions on the climate system. Changes in climate and land use affect terrestrial biosphere structure and functioning at present, and will likely impact on the terrestrial carbon balance during the coming decades - potentially providing a positive feedback to the climate system due to soil carbon releases under a warmer climate. Quantifying changes, and the associated uncertainties, in regional terrestrial carbon budgets resulting from these effects is relevant for the scientific understanding of the Earth system and for long-term climate mitigation strategies. A model describing the relevant processes that govern the terrestrial carbon cycle is a necessary tool to project regional carbon budgets into the future. This study (1) provides an extensive evaluation of the parameter-based uncertainty in model results of a leading terrestrial biosphere model, the Lund-Potsdam-Jena Dynamic Global Vegetation Model (LPJ-DGVM), against a range of observations and under climate change, thereby complementing existing studies on other aspects of model uncertainty; (2) evaluates different hypotheses to explain the age-related decline in forest growth, both from theoretical and experimental evidence, and introduces the most promising hypothesis into the model; (3) demonstrates how forest statistics can be successfully integrated with process-based modelling to provide long-term constraints on regional-scale forest carbon budget estimates for a European forest case-study; and (4) elucidates the combined effects of land-use and climate changes on the present-day and future terrestrial carbon balance over Europe for four illustrative scenarios - implemented by four general circulation models - using a comprehensive description of different land-use types within the framework of LPJ-DGVM. This study presents a way to assess and reduce uncertainty in process-based terrestrial carbon estimates on a regional scale. The results of this study demonstrate that simulated present-day land-atmosphere carbon fluxes are relatively well constrained, despite considerable uncertainty in modelled net primary production. Process-based terrestrial modelling and forest statistics are successfully combined to improve model-based estimates of vegetation carbon stocks and their change over time. Application of the advanced model for 77 European provinces shows that model-based estimates of biomass development with stand age compare favourably with forest inventory-based estimates for different tree species. Driven by historic changes in climate, atmospheric CO2 concentration, forest area and wood demand between 1948 and 2000, the model predicts European-scale, present-day age structure of forests, ratio of biomass removals to increment, and vegetation carbon sequestration rates that are consistent with inventory-based estimates. Alternative scenarios of climate and land-use change in the 21<sup>st century suggest carbon sequestration in the European terrestrial biosphere during the coming decades will likely be on magnitudes relevant to climate mitigation strategies. However, the uptake rates are small in comparison to the European emissions from fossil fuel combustion, and will likely decline towards the end of the century. Uncertainty in climate change projections is a key driver for uncertainty in simulated land-atmosphere carbon fluxes and needs to be accounted for in mitigation studies of the terrestrial biosphere.},
  subject      = {Terrestrische {\"O}kologie},
  language  = {en}
}
@phdthesis{Fuhrmann2018,
  author    = {Fuhrmann, Saskia},
  title     = {Physiologically-based pharmacokinetic and mechanism-based pharmacodynamic modelling of monoclonal antibodies with a focus on tumour targeting},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-418861},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xvii, 171},
  year      = {2018},
  abstract  = {Monoclonal antibodies (mAbs) are an innovative group of drugs with increasing clinical importance in oncology, combining high specificity with generally low toxicity. There are, however, numerous challenges associated with the development of mAbs as therapeutics. Mechanistic understanding of factors that govern the pharmacokinetics (PK) of mAbs is critical for drug development and the optimisation of effective therapies; in particular, adequate dosing strategies can improve patient quality life and lower drug cost. Physiologically-based PK (PBPK) models offer a physiological and mechanistic framework, which is of advantage in the context of animal to human extrapolation. Unlike for small molecule drugs, however, there is no consensus on how to model mAb disposition in a PBPK context. Current PBPK models for mAb PK hugely vary in their representation of physiology and parameterisation. Their complexity poses a challenge for their applications, e.g., translating knowledge from animal species to humans. In this thesis, we developed and validated a consensus PBPK model for mAb disposition taking into account recent insights into mAb distribution (antibody biodistribution coefficients and interstitial immunoglobulin G (IgG) pharmacokinetics) to predict tissue PK across several pre-clinical species and humans based on plasma data only. The model allows to a priori predict target-independent (unspecific) mAb disposition processes as well as mAb disposition in concentration ranges, for which the unspecific clearance (CL) dominates target-mediated CL processes. This is often the case for mAb therapies at steady state dosing. The consensus PBPK model was then used and refined to address two important problems: 1) Immunodeficient mice are crucial models to evaluate mAb efficacy in cancer therapy. Protection from elimination by binding to the neonatal Fc receptor is known to be a major pathway influencing the unspecific CL of both, endogenous and therapeutic IgG. The concentration of endogenous IgG, however, is reduced in immunodeficient mouse models, and this effect on unspecific mAb CL is unknown, yet of great importance for the extrapolation to human in the context of mAb cancer therapy. 2) The distribution of mAbs into solid tumours is of great interest. To comprehensively investigate mAb distribution within tumour tissue and its implications for therapeutic efficacy, we extended the consensus PBPK model by a detailed tumour distribution model incorporating a cell-level model for mAb-target interaction. We studied the impact of variations in tumour microenvironment on therapeutic efficacy and explored the plausibility of different mechanisms of action in mAb cancer therapy. The mathematical findings and observed phenomena shed new light on therapeutic utility and dosing regimens in mAb cancer treatment.},
  language  = {en}
}
@phdthesis{Sempf2005,
  author    = {Sempf, Mario},
  title     = {Nichtlineare Dynamik atmosph{\"a}rischer Zirkulationsregime in einem idealisierten Modell},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-5989},
  school      = {Universit{\"a}t Potsdam},
  year      = {2005},
  abstract  = {Unter atmosph{\"a}rischen Zirkulationsregimen versteht man bevorzugte quasi-station{\"a}re Zust{\"a}nde der atmosph{\"a}rischen Zirkulation auf der planetaren Skala, die f{\"u}r eine bis mehrere Wochen persistieren k{\"o}nnen. Klima{\"a}nderungen, ob nat{\"u}rlich entstanden oder anthropogen verursacht, {\"a}ußern sich in erster Linie durch {\"A}nderungen der Auftrittswahrscheinlichkeiten der nat{\"u}rlichen Regime. In der vorliegenden Arbeit wurden dynamische Mechanismen des Regimeverhaltens und der dekadischen Klimavariabilit{\"a}t der Atmosph{\"a}re bei Abwesenheit zeitlich ver{\"a}nderlicher externer Einflussfaktoren untersucht. Das Hauptwerkzeug daf{\"u}r war ein quasi-geostrophisches Dreischichtenmodell der winterlichen atmosph{\"a}rischen Zirkulation auf der Nordhemisph{\"a}re, das eine spektrale T21-Aufl{\"o}sung, einen orographischen und einen zeitlich konstanten thermischen Antrieb mit nicht-zonalen Anteilen besitzt. Ein solches Modell vermag großskalige atmosph{\"a}rische Str{\"o}mungsvorg{\"a}nge außerhalb der Tropen mit einiger Genauigkeit zu simulieren. Nicht ber{\"u}cksichtigt werden Feuchteprozesse, die Wechselwirkung der Atmosph{\"a}re mit anderen Teilen des Klimasystems sowie anthropogene Einfl{\"u}sse. F{\"u}r das Dreischichtenmodell wurde ein automatisiertes, iteratives Verfahren zur Anpassung des thermischen Modellantriebs neu entwickelt. Jede Iteration des Verfahrens besteht aus einer Testintegration des Modells, ihrer Auswertung, dem Vergleich der Ergebnisse mit den NCEP-NCAR-Reanalysedaten aus den Wintermonaten Dezember, Januar und Februar sowie einer auf diesem Vergleich basierenden Antriebskorrektur. Nach Konvergenz des Verfahrens stimmt das Modell sowohl bez{\"u}glich des zonal gemittelten Klimazustandes als auch bez{\"u}glich der zeitgemittelten nicht-zonalen außertropischen diabatischen Erw{\"a}rmung nahezu perfekt mit den wintergemittelten Reanalysedaten {\"u}berein. In einer 1000-j{\"a}hrigen Simulation wurden die beobachtete mittlere Zirkulation im Winter sowie ihre Variabilit{\"a}t realit{\"a}tsnah reproduziert, insbesondere die Arktische Oszillation (AO) und ihre vertikale Ausdehnung. Der AO-Index des Modells weist deutliche dekadische Schwankungen auf, die allein durch die interne Modelldynamik bedingt sind. Dar{\"u}ber hinaus zeigt das Modell ein Regimeverhalten, das gut mit den Beobachtungsdaten {\"u}bereintimmt. Es besitzt ein Regime, das in etwa der negativen Phase der Nordatlantischen Oszillation (NAO) entspricht und eines, das der positiven Phase der AO {\"a}hnelt. Eine weit verbreitete Hypothese ist die n{\"a}herungsweise {\"U}bereinstimmung zwischen Regimen und station{\"a}ren L{\"o}sungen der Bewegungsgleichungen. In der vorliegenden Arbeit wurde diese Hypothese f{\"u}r das Dreischichtenmodell {\"u}berpr{\"u}ft, mit negativem Resultat. Es wurden mittels eines Funktionalminimierungsverfahrens sechs verschiedene station{\"a}re Zust{\"a}nde gefunden. Diese sind allesamt durch eine {\"a}ußerst unrealistische Zirkulation gekennzeichnet und sind daher weit vom Modellattraktor entfernt. F{\"u}nf der sechs Zust{\"a}nde zeichnen sich durch einen extrem starken subtropischen Jet in der mittleren und obereren Modellschicht aus. Da die Ursache des Regimeverhaltens des Dreischichtenmodells nach wie vor unklar war, wurde auf ein einfacheres Modell, n{\"a}mlich ein barotropes Modell mit T21-Aufl{\"o}sung zur{\"u}ckgegriffen. F{\"u}r die Anpassung des Oberfl{\"a}chenantriebs wurde eine modifizierte Form der iterativen Prozedur verwendet. Die zeitgemittelte Zirkulation des barotropen Modells stimmt sehr gut mit der zeitlich und vertikal gemittelten Zirkulation des Dreischichtenmodells {\"u}berein. Das dominierende r{\"a}umliche Muster der Variabilit{\"a}t besitzt eine AO-{\"a}hnliche Struktur. Zudem besitzt das barotrope Modell zwei Regime, die n{\"a}herungsweise der positiven und negativen Phase der AO entsprechen und somit auch den Regimen des Dreischichtenmodells {\"a}hneln. Im Verlauf der Justierung des Oberfl{\"a}chenantriebs konnte beobachtet werden, dass die zwei Regime des barotropen Modells durch die Vereinigung zweier koexistierender Attraktoren entstanden. Der wahrscheinliche Mechanismus der Attraktorvereinigung ist eine Randkrise eines der beiden Attraktoren, gefolgt von einer explosiven Bifurkation des anderen Attraktors. Es wird die Hypothese aufgestellt, dass der beim barotropen Modell vorgefundene Mechanismus der Regimeentstehung f{\"u}r atmosph{\"a}rische Zirkulationsmodelle mit realit{\"a}tsnahem Regimeverhalten Allgemeing{\"u}ltigkeit besitzt. Gest{\"u}tzt wird die Hypothese durch vier Experimente mit dem Dreischichtenmodell, bei denen jeweils der Parameter der Bodenreibung verringert und die Antriebsanpassung wiederholt wurde. Bei diesen Experimenten erh{\"o}hte sich die Persistenz und die Separiertheit der Regime bei abnehmender Reibung drastisch und damit auch der Anteil dekadischer Zeitskalen an der Variabilit{\"a}t. Die Zunahme der Persistenz der Regime ist charakteristisch f{\"u}r die Ann{\"a}herung an eine inverse innere Krise, deren Existenz aber nicht nachgewiesen werden konnte.},
  subject      = {Nichtlineare Dynamik},
  language  = {de}
}
@phdthesis{Dehne2021,
  author    = {Dehne, Julian},
  title     = {M{\"o}glichkeiten und Limitationen der medialen Unterst{\"u}tzung forschenden Lernens},
  doi       = {10.25932/publishup-49789},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-497894},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xvii, 404},
  year      = {2021},
  abstract  = {Forschendes Lernen und die digitale Transformation sind zwei der wichtigsten Einfl{\"u}sse auf die Entwicklung der Hochschuldidaktik im deutschprachigen Raum. W{\"a}hrend das forschende Lernen als normative Theorie das sollen beschreibt, geben die digitalen Werkzeuge, alte wie neue, das k{\"o}nnen in vielen Bereichen vor. In der vorliegenden Arbeit wird ein Prozessmodell aufgestellt, was den Versuch unternimmt, das forschende Lernen hinsichtlich interaktiver, gruppenbasierter Prozesse zu systematisieren. Basierend auf dem entwickelten Modell wurde ein Softwareprototyp implementiert, der den gesamten Forschungsprozess begleiten kann. Dabei werden Gruppenformation, Feedback- und Reflexionsprozesse und das Peer Assessment mit Bildungstechnologien unterst{\"u}tzt. Die Entwicklungen wurden in einem qualitativen Experiment eingesetzt, um Systemwissen {\"u}ber die M{\"o}glichkeiten und Grenzen der digitalen Unterst{\"u}tzung von forschendem Lernen zu gewinnen.},
  language  = {de}
}
@phdthesis{Schroeder2015,
  author    = {Schr{\"o}der, Sarah},
  title     = {Modelling surface evolution coupled with tectonics},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-90385},
  school      = {Universit{\"a}t Potsdam},
  pages     = {viii, 129},
  year      = {2015},
  abstract  = {This study presents the development of 1D and 2D Surface Evolution Codes (SECs) and their coupling to any lithospheric-scale (thermo-)mechanical code with a quadrilateral structured surface mesh. Both SECs involve diffusion as approach for hillslope processes and the stream power law to reflect riverbed incision. The 1D SEC settles sediment that was produced by fluvial incision in the appropriate minimum, while the supply-limited 2D SEC DANSER uses a fast filling algorithm to model sedimantation. It is based on a cellular automaton. A slope-dependent factor in the sediment flux extends the diffusion equation to nonlinear diffusion. The discharge accumulation is achieved with the D8-algorithm and an improved drainage accumulation routine. Lateral incision enhances the incision's modelling. Following empirical laws, it incises channels of several cells width. The coupling method enables different temporal and spatial resolutions of the SEC and the thermo-mechanical code. It transfers vertical as well as horizontal displacements to the surface model. A weighted smoothing of the 3D surface displacements is implemented. The smoothed displacement vectors transmit the deformation by bilinear interpolation to the surface model. These interpolation methods ensure mass conservation in both directions and prevent the two surfaces from drifting apart. The presented applications refer to the evolution of the Pamir orogen. A calibration of DANSER's parameters with geomorphological data and a DEM as initial topography highlights the advantage of lateral incision. Preserving the channel width and reflecting incision peaks in narrow channels, this closes the huge gap between current orogen-scale incision models and observed topographies. River capturing models in a system of fault-bounded block rotations reaffirm the importance of the lateral incision routine for capturing events with channel initiation. The models show a low probability of river capturings with large deflection angles. While the probability of river capturing is directly depending on the uplift rate, the erodibility inside of a dip-slip fault speeds up headward erosion along the fault: The model's capturing speed increases within a fault. Coupling DANSER with the thermo-mechanical code SLIM 3D emphasizes the versatility of the SEC. While DANSER has minor influence on the lithospheric evolution of an indenter model, the brittle surface deformation is strongly affected by its sedimentation, widening a basin in between two forming orogens and also the southern part of the southern orogen to south, east and west.},
  language  = {en}
}
@phdthesis{Wriedt2004,
  author    = {Wriedt, Gunter},
  title     = {Modelling of nitrogen transport and turnover during soil and groundwater passage in a small lowland catchment of Northern Germany},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0001307},
  school      = {Universit{\"a}t Potsdam},
  year      = {2004},
  abstract  = {Stoffumsatzreaktionen und hydraulische Prozesse im Boden und Grundwasser k{\"o}nnen in Tieflandeinzugsgebieten zu einer Nitratretention f{\"u}hren. Die Untersuchung dieser Prozesse in Raum und Zeit kann mit Hilfe geeigneter Modelle erfolgen. Ziele dieser Arbeit sind: i) die Entwicklung eines geeigneten Modellansatzes durch Kombination von Teilmodellen zur Simulation des N-Transportes im Boden und Grundwasser von Tieflandeinzugsgebieten und ii) die Untersuchung von Wechselwirkungen zwischen Gebietseigenschaften und N-Transport unter besonderer Ber{\"u}cksichtigung der potentiellen N-Zufuhr in die Oberfl{\"a}chengew{\"a}sser. Der Modellansatz basiert auf der Kombination verschiedener Teilmodelle: das Bodenwasser- und -stickstoffmodell mRISK-N, das Grundwassermodell MODFLOW und das Stofftransportmodell RT3D. Zur Untersuchung der Wechselwirkungen mit den Gebietseigenschaften muss die Verteilung und Verf{\"u}gbarkeit von Reaktionspartnern ber{\"u}cksichtigt werden. Dazu wurde ein Reaktionsmodul entwickelt, welches chemische Prozesse im Grundwasser simuliert. Hierzu geh{\"o}ren die Mineralisation organischer Substanz durch Sauerstoff, Nitrat und Sulfat sowie die Pyritoxidation durch Sauerstoff und Nitrat. Der Modellansatz wurde in verschiedenen Einzelstudien angewandt, wobei jeweils bestimmte Teilmodelle im Vordergrund stehen. Alle Modellstudien basieren auf Daten aus dem Schaugrabeneinzugsgebiet (ca. 25 km\&\#178;), in der N{\"a}he von Osterburg(Altmark) im Norden Sachsen-Anhalts. Die folgenden Einzelstudien wurden durchgef{\"u}hrt: i) Evaluation des Bodenmodells anhand von Lysimeterdaten, ii) Modellierung eines Tracerexperimentes im Feldmaßstab als eine erste Anwendung des Reaktionsmoduls, iii) Untersuchung hydraulisch-chemischer Wechselwirkungen an einem 2D-Grundwassertransekt, iv) Fl{\"a}chenverteilte Modellierung von Grundwasserneubildung und Bodenstickstoffaustrag im Untersuchungsgebiet als Eingangsdaten f{\"u}r nachfolgende Grundwassersimulationen, und v) Untersuchung der Ausbreitung von Nitrat im Grundwasser und des Durchbruchs in die Oberfl{\"a}chengew{\"a}sser im Untersuchungsgebiet auf Basis einer 3D-Modellierung von Grundwasserstr{\"o}mung und reaktivem Stofftransport. Die Modellstudien zeigen, dass der Modellansatz geeignet ist, die Wechselwirkungen zwischen Stofftransport und \&ndash;umsatz und den hydraulisch-chemischen Gebietseigenschaften zu modellieren. Die Ausbreitung von Nitrat im Sediment wird wesentlich von der Verf{\"u}gbarkeit reaktiver Substanzen sowie der Verweilzeit im Grundwasserleiter bestimmt. Bei der Simulation des Untersuchungsgebietes wurde erst nach 70 Jahren eine der gegebenen Eintragssitutation entsprechende Nitratkonzentration im Grundwasserzustrom zum Grabensystem erreicht (konservativer Transport). Die Ber{\"u}cksichtigung von reaktivem Stofftransport f{\"u}hrt zu einer deutlichen Reduktion der Nitratkonzentrationen. Die Modellergebnisse zeigen, dass der Grundwasserzustrom die beobachtete Nitratbelastung im Grabensystem nicht erkl{\"a}ren kann, da der Großteil des Nitrates durch Denitrifikation verloren geht. Andere Quellen, wie direkte Eintr{\"a}ge oder Dr{\"a}nagenzufl{\"u}sse m{\"u}ssen ebenfalls in Betracht gezogen werden. Die Prognosef{\"a}higkeit des Modells f{\"u}r das Untersuchungsgebiet wird durch die Datenunsicherheiten und die Sch{\"a}tzung der Modellparameter eingeschr{\"a}nkt. Dennoch ist der Modellansatz eine wertvolle Hilfe bei der Identifizierung von belastungsrelevanten Teilfl{\"a}chen (Stoffquellen und -senken) sowie bei der Modellierung der Auswirkungen von Managementmaßnahmen oder Landnutzungsver{\"a}nderungen auf Grundlage von Szenario-Simulationen. Der Modellansatz unterst{\"u}tzt auch die Interpretation von Beobachtungsdaten, da so die lokalen Informationen in einen r{\"a}umlichen und zeitlichen Zusammenhang gestellt werden k{\"o}nnen.},
  language  = {en}
}
@phdthesis{Brune2018,
  author    = {Brune, Sascha},
  title     = {Modelling continental rift dynamics},
  doi       = {10.25932/publishup-43236},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-432364},
  school      = {Universit{\"a}t Potsdam},
  pages     = {192},
  year      = {2018},
  abstract  = {Continental rift systems open up unique possibilities to study the geodynamic system of our planet: geodynamic localization processes are imprinted in the morphology of the rift by governing the time-dependent activity of faults, the topographic evolution of the rift or by controlling whether a rift is symmetric or asymmetric. Since lithospheric necking localizes strain towards the rift centre, deformation structures of previous rift phases are often well preserved and passive margins, the end product of continental rifting, retain key information about the tectonic history from rift inception to continental rupture. Current understanding of continental rift evolution is based on combining observations from active rifts with data collected at rifted margins. Connecting these isolated data sets is often accomplished in a conceptual way and leaves room for subjective interpretation. Geodynamic forward models, however, have the potential to link individual data sets in a quantitative manner, using additional constraints from rock mechanics and rheology, which allows to transcend previous conceptual models of rift evolution. By quantifying geodynamic processes within continental rifts, numerical modelling allows key insight to tectonic processes that operate also in other plate boundary settings, such as mid ocean ridges, collisional mountain chains or subduction zones. In this thesis, I combine numerical, plate-tectonic, analytical, and analogue modelling approaches, whereas numerical thermomechanical modelling constitutes the primary tool. This method advanced rapidly during the last two decades owing to dedicated software development and the availability of massively parallel computer facilities. Nevertheless, only recently the geodynamical modelling community was able to capture 3D lithospheric-scale rift dynamics from onset of extension to final continental rupture. The first chapter of this thesis provides a broad introduction to continental rifting, a summary of the applied rift modelling methods and a short overview of previews studies. The following chapters, which constitute the main part of this thesis feature studies on plate boundary dynamics in two and three dimension followed by global scale analyses (Fig. 1). Chapter II focuses on 2D geodynamic modelling of rifted margin formation. It highlights the formation of wide areas of hyperextended crustal slivers via rift migration as a key process that affected many rifted margins worldwide. This chapter also contains a study of rift velocity evolution, showing that rift strength loss and extension velocity are linked through a dynamic feed-back. This process results in abrupt accelerations of the involved plates during rifting illustrating for the first time that rift dynamics plays a role in changing global-scale plate motions. Since rift velocity affects key processes like faulting, melting and lower crustal flow, this study also implies that the slow-fast velocity evolution should be imprinted in rifted margin structures. Chapter III relies on 3D Cartesian rift models in order to investigate various aspects of rift obliquity. Oblique rifting occurs if the extension direction is not orthogonal to the rift trend. Using 3D lithospheric-scale models from rift initialisation to breakup I could isolate a characteristic evolution of dominant fault orientations. Further work in Chapter III addresses the impact of rift obliquity on the strength of the rift system. We illustrate that oblique rifting is mechanically preferred over orthogonal rifting, because the brittle yielding requires a lower tectonic force. This mechanism elucidates rift competition during South Atlantic rifting, where the more oblique Equatorial Atlantic Rift proceeded to breakup while the simultaneously active but less oblique West African rift system became a failed rift. Finally this Chapter also investigates the impact of a previous rift phase on current tectonic activity in the linkage area of the Kenyan with Ethiopian rift. We show that the along strike changes in rift style are not caused by changes in crustal rheology. Instead the rift linkage pattern in this area can be explained when accounting for the thinned crust and lithosphere of a Mesozoic rift event. Chapter IV investigates rifting from the global perspective. A first study extends the oblique rift topic of the previous chapter to global scale by investigating the frequency of oblique rifting during the last 230 million years. We find that approximately 70\% of all ocean-forming rift segments involved an oblique component of extension where obliquities exceed 20°. This highlights the relevance of 3D approaches in modelling, surveying, and interpretation of many rifted margins. In a final study, we propose a link between continental rift activity, diffuse CO2 degassing and Mesozoic/Cenozoic climate changes. We used recent CO2 flux measurements in continental rifts to estimate worldwide rift-related CO2 release, which we based on the global extent of rifts through time. The first-order correlation to paleo-atmospheric CO2 proxy data suggests that rifts constitute a major element of the global carbon cycle.},
  language  = {en}
}
@book{Jankowski2004,
  author    = {Jankowski, \poundsukasz},
  title     = {Modelling and simulation of light propagation in non-aged and aged step-index polymer optical fibres. - [{\"u}berarb. Diss.]},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0001659},
  publisher      = {Universit{\"a}t Potsdam},
  year      = {2004},
  abstract  = {Kunststofflichtwellenleiter (POFs) stellen ein verh{\"a}ltnism{\"a}ßig neues Medium zur optische Datenkommunikation {\"u}ber kurzen Strecken dar. W{\"a}hrend ihrer Einsatzdauer unterliegen POFs unterschiedlichen Arten von Umweltbeanspruchungen, haupts{\"a}chlich durch hohe Temperatur, hohe Feuchtigkeit und mechanischen Belastungen. Zahlreiche experimentelle Forschungen besch{\"a}ftigten sich mit der standardisierten Pr{\"u}fung der Zuverl{\"a}ssigkeit von im Handel erh{\"a}ltlichen Fasern. Jedoch gab es bisher wenig Erfolg bei der Bem{\"u}hung, zwei grundlegende optische Erscheinungen, Absorption und Streuung, die die Lichtausbreitung in Fasern stark beeinflussen, zu verstehen und praktisch zu modellieren: Diese beiden Effekte beschreiben nicht nur die Qualit{\"a}t neuer Fasern, sondern sie werden auch stark durch die Alterungsprozess beeinflusst. Der Hauptzweck dieser Doktorarbeit war es, ein praktisch verwendbares und theoretisch gut fundiertes Modell der Lichtausbreitung in nicht gealterten und gealterten POFs zu entwickeln und es durch optische Experimente zu verifizieren. Dabei wurden anwendungsorientierte Aspekte mit theoretischer POF-Modellierung kombiniert. Die Arbeit enth{\"a}lt die erste bekannte Anwendung der Wellenanalyse zur Untersuchung der winkelabh{\"a}ngigen Eigenschaften der Streuung in Lichtwellenleitern. F{\"u}r die praktischen Experimente wurden mehrere POF-Proben unterschiedlicher Hersteller k{\"u}nstlich gealtert, indem sie bis 4500 Stunden bei 100 °C gelagert wurden (ohne Feuchtekontrolle). Die Parameter der jeweiligen Simulationen wurden mittels einer systematischen Optimierung an die gemessen optischen Eigenschaften der gealterten Proben angeglichen. Die Resultate deuten an, dass der {\"U}bertragungsverlust der gealterten Fasern in den ersten Tagen und Wochen der Alterung am st{\"a}rksten durch eine wesentliche physikalische Verschlechterung der Kern-Mantel-Grenzfl{\"a}che verursacht wird. Chemische Effekte des Alterungsprozesses scheinen im Faserkernmaterial zuerst nach einigen Monaten aufzutreten.},
  language  = {en}
}
@phdthesis{Jankowski2004,
  author    = {Jankowski, \poundsukasz},
  title     = {Modelling and simulation of light propagation in non-aged and aged step-index polymer optical fibres},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-0001649},
  school      = {Universit{\"a}t Potsdam},
  year      = {2004},
  abstract  = {Kunststofflichtwellenleiter (POFs) stellen ein verh{\"a}ltnism{\"a}ßig neues Medium zur optische Datenkommunikation {\"u}ber kurzen Strecken dar. W{\"a}hrend ihrer Einsatzdauer unterliegen POFs unterschiedlichen Arten von Umweltbeanspruchungen, haupts{\"a}chlich durch hohe Temperatur, hohe Feuchtigkeit und mechanischen Belastungen. Zahlreiche experimentelle Forschungen besch{\"a}ftigten sich mit der standardisierten Pr{\"u}fung der Zuverl{\"a}ssigkeit von im Handel erh{\"a}ltlichen Fasern. Jedoch gab es bisher wenig Erfolg bei der Bem{\"u}hung, zwei grundlegende optische Erscheinungen, Absorption und Streuung, die die Lichtausbreitung in Fasern stark beeinflussen, zu verstehen und praktisch zu modellieren: Diese beiden Effekte beschreiben nicht nur die Qualit{\"a}t neuer Fasern, sondern sie werden auch stark durch die Alterungsprozess beeinflusst. Der Hauptzweck dieser Doktorarbeit war es, ein praktisch verwendbares und theoretisch gut fundiertes Modell der Lichtausbreitung in nicht gealterten und gealterten POFs zu entwickeln und es durch optische Experimente zu verifizieren. Dabei wurden anwendungsorientierte Aspekte mit theoretischer POF-Modellierung kombiniert. Die Arbeit enth{\"a}lt die erste bekannte Anwendung der Wellenanalyse zur Untersuchung der winkelabh{\"a}ngigen Eigenschaften der Streuung in Lichtwellenleitern. F{\"u}r die praktischen Experimente wurden mehrere POF-Proben unterschiedlicher Hersteller k{\"u}nstlich gealtert, indem sie bis 4500 Stunden bei 100 °C gelagert wurden (ohne Feuchtekontrolle). Die Parameter der jeweiligen Simulationen wurden mittels einer systematischen Optimierung an die gemessen optischen Eigenschaften der gealterten Proben angeglichen. Die Resultate deuten an, dass der {\"U}bertragungsverlust der gealterten Fasern in den ersten Tagen und Wochen der Alterung am st{\"a}rksten durch eine wesentliche physikalische Verschlechterung der Kern-Mantel-Grenzfl{\"a}che verursacht wird. Chemische Effekte des Alterungsprozesses scheinen im Faserkernmaterial zuerst nach einigen Monaten aufzutreten.},
  language  = {en}
}
@phdthesis{Hoellerer2016,
  author    = {H{\"o}llerer, Reinhard},
  title     = {Modellierung und Optimierung von B{\"u}rgerdiensten am Beispiel der Stadt Landshut},
  doi       = {10.25932/publishup-42598},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-425986},
  school      = {Universit{\"a}t Potsdam},
  pages     = {xii, 244},
  year      = {2016},
  abstract  = {Die Projektierung und Abwicklung sowie die statische und dynamische Analyse von Gesch{\"a}ftsprozessen im Bereich des Verwaltens und Regierens auf kommunaler, L{\"a}nder- wie auch Bundesebene mit Hilfe von Informations- und Kommunikationstechniken besch{\"a}ftigen Politiker und Strategen f{\"u}r Informationstechnologie ebenso wie die {\"O}ffentlichkeit seit Langem. Der hieraus entstandene Begriff E-Government wurde in der Folge aus den unterschiedlichsten technischen, politischen und semantischen Blickrichtungen beleuchtet. Die vorliegende Arbeit konzentriert sich dabei auf zwei Schwerpunktthemen: • Das erste Schwerpunktthema behandelt den Entwurf eines hierarchischen Architekturmodells, f{\"u}r welches sieben hierarchische Schichten identifiziert werden k{\"o}nnen. Diese erscheinen notwendig, aber auch hinreichend, um den allgemeinen Fall zu beschreiben. Den Hintergrund hierf{\"u}r liefert die langj{\"a}hrige Prozess- und Verwaltungserfahrung als Leiter der EDV-Abteilung der Stadtverwaltung Landshut, eine kreisfreie Stadt mit rund 69.000 Einwohnern im Nordosten von M{\"u}nchen. Sie steht als Repr{\"a}sentant f{\"u}r viele Verwaltungsvorg{\"a}nge in der Bundesrepublik Deutschland und ist dennoch als Analyseobjekt in der Gesamtkomplexit{\"a}t und Prozessquantit{\"a}t {\"u}berschaubar. Somit k{\"o}nnen aus der Analyse s{\"a}mtlicher Kernabl{\"a}ufe statische und dynamische Strukturen extrahiert und abstrakt modelliert werden. Die Schwerpunkte liegen in der Darstellung der vorhandenen Bedienabl{\"a}ufe in einer Kommune. Die Transformation der Bedienanforderung in einem hierarchischen System, die Darstellung der Kontroll- und der Operationszust{\"a}nde in allen Schichten wie auch die Strategie der Fehlererkennung und Fehlerbehebung schaffen eine transparente Basis f{\"u}r umfassende Restrukturierungen und Optimierungen. F{\"u}r die Modellierung wurde FMC-eCS eingesetzt, eine am Hasso-Plattner-Institut f{\"u}r Softwaresystemtechnik GmbH (HPI) im Fachgebiet Kommunikationssysteme entwickelte Methodik zur Modellierung zustandsdiskreter Systeme unter Ber{\"u}cksichtigung m{\"o}glicher Inkonsistenzen (Betreuer: Prof. Dr.-Ing. Werner Zorn [ZW07a, ZW07b]). • Das zweite Schwerpunktthema widmet sich der quantitativen Modellierung und Optimierung von E-Government-Bediensystemen, welche am Beispiel des B{\"u}rgerb{\"u}ros der Stadt Landshut im Zeitraum 2008 bis 2015 durchgef{\"u}hrt wurden. Dies erfolgt auf Basis einer kontinuierlichen Betriebsdatenerfassung mit aufwendiger Vorverarbeitung zur Extrahierung mathematisch beschreibbarer Wahrscheinlichkeitsverteilungen. Der hieraus entwickelte Dienstplan wurde hinsichtlich der erzielbaren Optimierungen im dauerhaften Echteinsatz verifiziert. [ZW07a] Zorn, Werner: «FMC-QE A New Approach in Quantitative Modeling», Vortrag anl{\"a}sslich: MSV'07- The 2007 International Conference on Modeling, Simulation and Visualization Methods WorldComp2007, Las Vegas, 28.6.2007. [ZW07b] Zorn, Werner: «FMC-QE, A New Approach in Quantitative Modeling», Ver{\"o}ffentlichung, Hasso-Plattner-Institut f{\"u}r Softwaresystemtechnik an der Universit{\"a}t Potsdam, 28.6.2007.},
  language  = {de}
}
@book{WaetzoldtGiese2015,
  author    = {W{\"a}tzoldt, Sebastian and Giese, Holger},
  title     = {Modeling collaborations in self-adaptive systems of systems},
  number    = {96},
  publisher = {Universit{\"a}tsverlag Potsdam},
  address   = {Potsdam},
  isbn      = {978-3-86956-324-4},
  issn      = {1613-5652},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-73036},
  publisher      = {Universit{\"a}t Potsdam},
  pages     = {72},
  year      = {2015},
  abstract  = {An increasing demand on functionality and flexibility leads to an integration of beforehand isolated system solutions building a so-called System of Systems (SoS). Furthermore, the overall SoS should be adaptive to react on changing requirements and environmental conditions. Due SoS are composed of different independent systems that may join or leave the overall SoS at arbitrary point in times, the SoS structure varies during the systems lifetime and the overall SoS behavior emerges from the capabilities of the contained subsystems. In such complex system ensembles new demands of understanding the interaction among subsystems, the coupling of shared system knowledge and the influence of local adaptation strategies to the overall resulting system behavior arise. In this report, we formulate research questions with the focus of modeling interactions between system parts inside a SoS. Furthermore, we define our notion of important system types and terms by retrieving the current state of the art from literature. Having a common understanding of SoS, we discuss a set of typical SoS characteristics and derive general requirements for a collaboration modeling language. Additionally, we retrieve a broad spectrum of real scenarios and frameworks from literature and discuss how these scenarios cope with different characteristics of SoS. Finally, we discuss the state of the art for existing modeling languages that cope with collaborations for different system types such as SoS.},
  language  = {en}
}